HHSEARCH alignment of GI: 254780891 and SCOP domain: d2hkja3

Alignment
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.52  E-value=6.7e-14  Score=105.29  Aligned_cols=99  Identities=11%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC---CCCCC--C-CCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-------CCC
Q ss_conf             001234445676646876532001---11112--3-5577204799987898440245887405454578-------998
Q gi|254780891|r  112 SRERAKILLNLFMVAHASLPRGGK---VTISV--Q-DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-------IDS  178 (215)
Q Consensus       112 ~~~~~qvl~NLi~NA~~a~~~gg~---I~i~~--~-~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~-------~~g  178 (215)
                      ...+.|++.||+.||++|+..+|.   |.+.+  . ...+.+.|.|+|+|+||+ ++.+..+|.++++.+       .++
T Consensus        20 ~~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~~~~~~i~V~DnG~Gi~-~~~~~~~f~~~~~s~~~~~~~~~G~   98 (219)
T d2hkja3          20 ARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQTRGM   98 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEEECSCCCC-GGGHHHHHHCCCSSCCCCCSCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC-HHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf             789999999999999998871898523999999863899899999985898888-7898741032176023465326676


Q ss_pred             CCHHHHHHHHHHHHCCCE-EEEEEECCCCEEEEE
Q ss_conf             720499999999970987-999987799269999
Q gi|254780891|r  179 HDIQFYYVILLAHENKIR-LLPEIIDDHNVVLSA  211 (215)
Q Consensus       179 ~GlGl~~~~~i~~~~gG~-i~v~~~~~~g~~f~~  211 (215)
                      +|+||++++.+++.|+|+ +.|++..++|.++..
T Consensus        99 ~GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~~~  132 (219)
T d2hkja3          99 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYT  132 (219)
T ss_dssp             CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEE
T ss_conf             1889999999999839927999988148984999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: Topoisomerase VI-B subunit
species: Archaeon Sulfolobus shibatae [TaxId: 2286]