BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] (215 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] gi|254040568|gb|ACT57364.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 215/215 (100%), Positives = 215/215 (100%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA Sbjct: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL Sbjct: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD Sbjct: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK Sbjct: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 >gi|315122692|ref|YP_004063181.1| hypothetical protein CKC_04720 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496094|gb|ADR52693.1| hypothetical protein CKC_04720 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 215 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/215 (66%), Positives = 174/215 (80%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M N+ F+LSSMDL ALLCSRICHDIISPIGAIHNSLELLDE GIEDE +QLIRLSSM+A Sbjct: 1 MVNNLSFSLSSMDLSALLCSRICHDIISPIGAIHNSLELLDEEGIEDEAIQLIRLSSMNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 I RLKF+RLAF YTGSV SL+GL +I+Q+I DFIA+D R+ V W E+ DL R+++K+LL Sbjct: 61 IARLKFIRLAFCYTGSVHSLVGLDEIKQIIRDFIAIDNRITVFWVSEETDLFRKKSKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLFM+A+ASL +GG++ IS++DS +NIFSLKINGN R PEKF QI+ +V+ IDSH Sbjct: 121 NLFMIAYASLLKGGEIIISIKDSTADNIFSLKINGNRVRLPEKFIQIMAQDVDLEIDSHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +Q YY LLA EN ++L EIIDD NVVLS L +K Sbjct: 181 VQLYYTALLADENDVKLSYEIIDDQNVVLSVLTKK 215 >gi|222086835|ref|YP_002545369.1| hypothetical protein Arad_3506 [Agrobacterium radiobacter K84] gi|221724283|gb|ACM27439.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 215 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 94/197 (47%), Positives = 136/197 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN L+ DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLTGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +VSWTG + + + R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAAAEKKAEVSWTGPRAIIPKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA+ S+PRGG + + +++ + F++ G L R P KF +I G +E +D+H Sbjct: 121 NLFLVAYGSIPRGGNIDVVLENPDLDAKFTITTKGRLMRVPPKFAEICSGTLEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E+ + L Sbjct: 181 IQPYYTVLLADESGMEL 197 >gi|307300490|ref|ZP_07580270.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C] gi|307318355|ref|ZP_07597790.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83] gi|306896037|gb|EFN26788.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83] gi|306904656|gb|EFN35240.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C] Length = 220 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 92/192 (47%), Positives = 135/192 (70%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ S+PRGG + I++++ + + IF+L G + R P K +++ G E +D+H Sbjct: 121 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 180 Query: 181 IQFYYVILLAHE 192 IQ YY +LLA E Sbjct: 181 IQPYYTVLLAEE 192 >gi|15966473|ref|NP_386826.1| hypothetical protein SMc00652 [Sinorhizobium meliloti 1021] gi|15075744|emb|CAC47299.1| ChpT histidine phosphotransferase [Sinorhizobium meliloti 1021] Length = 221 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 92/192 (47%), Positives = 135/192 (70%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 2 MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 62 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 121 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ S+PRGG + I++++ + + IF+L G + R P K +++ G E +D+H Sbjct: 122 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 181 Query: 181 IQFYYVILLAHE 192 IQ YY +LLA E Sbjct: 182 IQPYYTVLLAEE 193 >gi|150397806|ref|YP_001328273.1| hypothetical protein Smed_2608 [Sinorhizobium medicae WSM419] gi|150029321|gb|ABR61438.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 220 Score = 207 bits (527), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 135/192 (70%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVTWNGPRAIIAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ S+PRGG + I++++ + + +F+L G + R P K +++ G E +D+H Sbjct: 121 NLFLIAYGSIPRGGIIDITLENPEFDALFTLSAKGRMMRVPPKLVELISGTPEEAVDAHS 180 Query: 181 IQFYYVILLAHE 192 IQ YY +LLA E Sbjct: 181 IQPYYTVLLAEE 192 >gi|227823289|ref|YP_002827261.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234] gi|227342290|gb|ACP26508.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234] Length = 215 Score = 207 bits (527), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 135/192 (70%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 2 MAKNPNLTLTGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W+G + + + R K+LL Sbjct: 62 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAAAEKKTEVNWSGPRAIIGKNRVKLLL 121 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ ++PRGG + I++++ + + +F+L G + R P K +++ G E +D+H Sbjct: 122 NLFLIAYGAIPRGGSIDITLENPEFDAVFTLVAKGRMMRVPPKLMELLSGTPEEAVDAHS 181 Query: 181 IQFYYVILLAHE 192 IQ YY +LLA E Sbjct: 182 IQPYYTVLLAEE 193 >gi|15889709|ref|NP_355390.1| hypothetical protein Atu2438 [Agrobacterium tumefaciens str. C58] gi|15157619|gb|AAK88175.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 215 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 90/205 (43%), Positives = 139/205 (67%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A Sbjct: 1 MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GS + I G+ E+ +DF A +K+ +VSW+G + + + R K+LL Sbjct: 61 SVRLKFARLAFGASGSAGASIDTGEAEKAAQDFAAAEKKAEVSWSGPRAIVPKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA+ ++PRGG V + +++ + + F + + G + R P KF +I +G +E +D+H Sbjct: 121 NLFLVAYGAIPRGGNVDVLLENPEGDARFEIAVKGRMMRVPAKFVEIYEGRLEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDH 205 +Q YY +LLA E + + ++ DD Sbjct: 181 VQPYYTLLLAEEANMTVEYKVHDDR 205 >gi|222149590|ref|YP_002550547.1| hypothetical protein Avi_3529 [Agrobacterium vitis S4] gi|221736572|gb|ACM37535.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 216 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 139/197 (70%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M KN+ L+ DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MLKNVNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ ++DF A +K+ +++W G + +++ R K+L+ Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAVKDFAAAEKKTEITWNGPRAIIAKNRVKLLM 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL +VA+ ++PRGG + +++++ + + F++ G + R P KF +I +G +E +D+H Sbjct: 121 NLMLVAYGAIPRGGSLDVTLENPEYDAKFTIVAKGRMLRVPPKFAEICNGQMEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E+ + L Sbjct: 181 IQPYYTVLLADESSMEL 197 >gi|325293788|ref|YP_004279652.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3] gi|325061641|gb|ADY65332.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3] Length = 215 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 134/192 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A Sbjct: 1 MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GS + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSAGASIDTGEAEKAAKDFAAAEKKAEVTWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+V+++++PRGG V + ++D + + F + + G + R P KF +I +G +E +D+H Sbjct: 121 NLFLVSYSAIPRGGNVDVVLEDPEGDAKFEITVKGKMMRIPAKFAEIYEGRLEEAVDAHS 180 Query: 181 IQFYYVILLAHE 192 +Q YY +LLA E Sbjct: 181 VQPYYTLLLAEE 192 >gi|190893162|ref|YP_001979704.1| hypothetical protein RHECIAT_CH0003580 [Rhizobium etli CIAT 652] gi|218516916|ref|ZP_03513756.1| hypothetical protein Retl8_26701 [Rhizobium etli 8C-3] gi|190698441|gb|ACE92526.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 215 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 136/197 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++S+PRGG + +++++ + + F+L G + R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 181 IQPYYTVLLAEECGMTL 197 >gi|86358934|ref|YP_470826.1| hypothetical protein RHE_CH03336 [Rhizobium etli CFN 42] gi|86283036|gb|ABC92099.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 215 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 136/197 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAIAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F+L G L R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFTLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 181 IQPYYAVLLAEECGMTL 197 >gi|218675161|ref|ZP_03524830.1| hypothetical protein RetlG_28959 [Rhizobium etli GR56] Length = 232 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 136/197 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 18 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 77 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 78 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 137 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++S+PRGG + +++++ + + F+L G + R P KF +I G +E ID+H Sbjct: 138 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGAIEEAIDAHS 197 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 198 IQPYYAVLLAEECGMTL 214 >gi|209550657|ref|YP_002282574.1| hypothetical protein Rleg2_3081 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536413|gb|ACI56348.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 216 Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 92/197 (46%), Positives = 136/197 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN+ L+ DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNLNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 181 IQPYYTVLLAQECGMTL 197 >gi|218682347|ref|ZP_03529948.1| hypothetical protein RetlC8_26202 [Rhizobium etli CIAT 894] Length = 243 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 135/197 (68%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 29 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 88 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 89 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 148 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 149 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGAIEEAIDAHS 208 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 209 IQPYYTVLLAQECGMTL 225 >gi|241206028|ref|YP_002977124.1| hypothetical protein Rleg_3338 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859918|gb|ACS57585.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 215 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 135/197 (68%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 181 IQPYYTVLLAQECGMTL 197 >gi|116253501|ref|YP_769339.1| hypothetical protein RL3760 [Rhizobium leguminosarum bv. viciae 3841] gi|115258149|emb|CAK09250.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 216 Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 135/197 (68%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 2 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 62 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 121 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 122 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 181 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E + L Sbjct: 182 IQPYYTVLLAQECGMTL 198 >gi|163758755|ref|ZP_02165842.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43] gi|162284045|gb|EDQ34329.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43] Length = 218 Score = 200 bits (509), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 91/197 (46%), Positives = 136/197 (69%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M LIR S+++A Sbjct: 1 MAKNKNLTLAGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ + D+++ DK+ +V W+G + + + + K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAVLDYVSADKKTEVKWSGPRAIIPKNQVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA+ ++PRGG++ + ++ + F L G + R P KF +I G ++ ID+H Sbjct: 121 NLFLVAYGAIPRGGEIDVILETLDTDPKFRLVSRGRMVRVPPKFLEIHSGELDEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRL 197 IQ YY +LLA E+ + L Sbjct: 181 IQPYYTVLLADESGMAL 197 >gi|319781796|ref|YP_004141272.1| hypothetical protein Mesci_2070 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167684|gb|ADV11222.1| Protein of unknown function DUF2328 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 209 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 130/187 (69%), Gaps = 2/187 (1%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMKLIRQSARNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS LI GD E V F+ +++ +++W G + L + + K+LLNL +VA Sbjct: 65 ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGPRALLPKNKVKLLLNLILVA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYY 185 +A++PRGGK+++++++ + E F+L G + R P KF ++ G+ E ID+H +Q YY Sbjct: 124 NAAIPRGGKLSVTLENLETEPRFALTSAGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183 Query: 186 VILLAHE 192 +LLA E Sbjct: 184 TLLLARE 190 >gi|13472495|ref|NP_104062.1| hypothetical protein mlr2813 [Mesorhizobium loti MAFF303099] gi|14023241|dbj|BAB49848.1| mlr2813 [Mesorhizobium loti MAFF303099] Length = 209 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 129/187 (68%), Gaps = 2/187 (1%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS LI GD E V F+ +++ +++W G + L + + K+LLNL +VA Sbjct: 65 ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGARALLPKNKVKLLLNLILVA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYY 185 +A++PRGGK+ +++++ + E SL +G + R P KF ++ G+ E ID+H +Q YY Sbjct: 124 NAAIPRGGKLVVTLENLETEPRISLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183 Query: 186 VILLAHE 192 +LLA E Sbjct: 184 TLLLARE 190 >gi|153008901|ref|YP_001370116.1| hypothetical protein Oant_1571 [Ochrobactrum anthropi ATCC 49188] gi|239832475|ref|ZP_04680804.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|151560789|gb|ABS14287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] gi|239824742|gb|EEQ96310.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 209 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 77/191 (40%), Positives = 124/191 (64%), Gaps = 2/191 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A RL+F Sbjct: 6 TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFA 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ ++ + Sbjct: 66 RIAFGAAGSAGVQIDTGDAQNVATEYFK-NEKPEFTWEGTRVLLPKNKVKLLLNMLLIGN 124 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 A++PRGG + + ++ E F + + G + R P KF ++ G E ID+H +Q YY Sbjct: 125 AAIPRGGSLAVRLEGGDTEPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQPYYT 184 Query: 187 ILLAHENKIRL 197 +LLA E +++ Sbjct: 185 LLLAEEAGMKI 195 >gi|62290478|ref|YP_222271.1| hypothetical protein BruAb1_1585 [Brucella abortus bv. 1 str. 9-941] gi|82700401|ref|YP_414975.1| hypothetical protein BAB1_1613 [Brucella melitensis biovar Abortus 2308] gi|189024705|ref|YP_001935473.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19] gi|237815986|ref|ZP_04594983.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254689778|ref|ZP_05153032.1| hypothetical protein Babob68_06304 [Brucella abortus bv. 6 str. 870] gi|254694267|ref|ZP_05156095.1| hypothetical protein Babob3T_06314 [Brucella abortus bv. 3 str. Tulya] gi|254697922|ref|ZP_05159750.1| hypothetical protein Babob28_09475 [Brucella abortus bv. 2 str. 86/8/59] gi|254730812|ref|ZP_05189390.1| hypothetical protein Babob42_06334 [Brucella abortus bv. 4 str. 292] gi|256258030|ref|ZP_05463566.1| hypothetical protein Babob9C_11918 [Brucella abortus bv. 9 str. C68] gi|260547009|ref|ZP_05822748.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260755310|ref|ZP_05867658.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758531|ref|ZP_05870879.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260762355|ref|ZP_05874698.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884327|ref|ZP_05895941.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261214574|ref|ZP_05928855.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|297248861|ref|ZP_06932579.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196] gi|62196610|gb|AAX74910.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616502|emb|CAJ11569.1| conserved hypothetical protein [Brucella melitensis biovar Abortus 2308] gi|189020277|gb|ACD72999.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19] gi|237789284|gb|EEP63495.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|260096059|gb|EEW79936.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668849|gb|EEX55789.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260672787|gb|EEX59608.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675418|gb|EEX62239.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260873855|gb|EEX80924.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916181|gb|EEX83042.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|297176030|gb|EFH35377.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196] Length = 209 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 126/195 (64%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++ + ++PRGG + + ++ S + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGSDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRL 197 YY +LLA E +++ Sbjct: 181 PYYTLLLAEEAGMKI 195 >gi|306843048|ref|ZP_07475673.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2] gi|306286778|gb|EFM58324.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2] Length = 207 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 123/191 (64%), Gaps = 2/191 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A RL+F Sbjct: 4 TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFA 63 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ ++ + Sbjct: 64 RIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNMLLIGN 122 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H IQ YY Sbjct: 123 GAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSIQPYYT 182 Query: 187 ILLAHENKIRL 197 +LLA E +++ Sbjct: 183 LLLAEEAGMKI 193 >gi|110634560|ref|YP_674768.1| hypothetical protein Meso_2211 [Mesorhizobium sp. BNC1] gi|110285544|gb|ABG63603.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 209 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 127/188 (67%), Gaps = 2/188 (1%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ MQLIR S+++A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGTDEDAMQLIRASAVNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS I GD E V FI +++ + W G + L + R K+LLNL ++A Sbjct: 65 ARIAFGAAGSAGMQIDTGDAEAVATAFIR-NEKPDLEWIGGRAFLPKNRVKLLLNLLLIA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185 +A++PRGGK+T+ +++ +F++ +G + R P KF + G ++ ID+H +QFYY Sbjct: 124 NAAIPRGGKLTVRLENLDASPLFTITAHGPMVRVPAKFLDLHAGRQLDEAIDAHSVQFYY 183 Query: 186 VILLAHEN 193 +LLA E Sbjct: 184 TLLLARET 191 >gi|254710629|ref|ZP_05172440.1| hypothetical protein BpinB_10236 [Brucella pinnipedialis B2/94] gi|261318201|ref|ZP_05957398.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261297424|gb|EEY00921.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] Length = 209 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 126/195 (64%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRL 197 YY++LLA E +++ Sbjct: 181 PYYMLLLAEEAGMKI 195 >gi|294852910|ref|ZP_06793583.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026] gi|294821499|gb|EFG38498.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026] Length = 209 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRL 197 YY +LLA E +++ Sbjct: 181 PYYTLLLAEEAGMKI 195 >gi|148560434|ref|YP_001259465.1| hypothetical protein BOV_1541 [Brucella ovis ATCC 25840] gi|163843847|ref|YP_001628251.1| hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445] gi|225628032|ref|ZP_03786068.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|254702315|ref|ZP_05164143.1| hypothetical protein Bsuib55_15846 [Brucella suis bv. 5 str. 513] gi|254714813|ref|ZP_05176624.1| hypothetical protein BcetM6_16034 [Brucella ceti M644/93/1] gi|254717873|ref|ZP_05179684.1| hypothetical protein BcetM_16001 [Brucella ceti M13/05/1] gi|254719623|ref|ZP_05181434.1| hypothetical protein Bru83_08780 [Brucella sp. 83/13] gi|256032122|ref|ZP_05445736.1| hypothetical protein BpinM2_16003 [Brucella pinnipedialis M292/94/1] gi|256061644|ref|ZP_05451783.1| hypothetical protein Bneo5_14955 [Brucella neotomae 5K33] gi|256160318|ref|ZP_05458012.1| hypothetical protein BcetM4_15031 [Brucella ceti M490/95/1] gi|256255523|ref|ZP_05461059.1| hypothetical protein BcetB_14808 [Brucella ceti B1/94] gi|256370011|ref|YP_003107522.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915] gi|260169257|ref|ZP_05756068.1| hypothetical protein BruF5_13023 [Brucella sp. F5/99] gi|261219719|ref|ZP_05934000.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261222733|ref|ZP_05937014.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261322608|ref|ZP_05961805.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325654|ref|ZP_05964851.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752881|ref|ZP_05996590.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261758770|ref|ZP_06002479.1| conserved hypothetical protein [Brucella sp. F5/99] gi|265984634|ref|ZP_06097369.1| conserved hypothetical protein [Brucella sp. 83/13] gi|265989234|ref|ZP_06101791.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265998695|ref|ZP_06111252.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|306837742|ref|ZP_07470610.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653] gi|306844598|ref|ZP_07477185.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1] gi|148371691|gb|ABQ61670.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|163674570|gb|ABY38681.1| Hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445] gi|225617195|gb|EEH14241.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|256000174|gb|ACU48573.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915] gi|260921317|gb|EEX87970.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260924808|gb|EEX91376.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295298|gb|EEX98794.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261301634|gb|EEY05131.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261738754|gb|EEY26750.1| conserved hypothetical protein [Brucella sp. F5/99] gi|261742634|gb|EEY30560.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|262553319|gb|EEZ09153.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264661431|gb|EEZ31692.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|264663226|gb|EEZ33487.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306275042|gb|EFM56805.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1] gi|306407198|gb|EFM63409.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653] Length = 209 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRL 197 YY +LLA E +++ Sbjct: 181 PYYTLLLAEEAGMKI 195 >gi|23502461|ref|NP_698588.1| hypothetical protein BR1598 [Brucella suis 1330] gi|161619538|ref|YP_001593425.1| hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365] gi|254704843|ref|ZP_05166671.1| hypothetical protein Bsuib36_13174 [Brucella suis bv. 3 str. 686] gi|260565915|ref|ZP_05836385.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261755539|ref|ZP_05999248.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|23348452|gb|AAN30503.1| conserved hypothetical protein [Brucella suis 1330] gi|161336349|gb|ABX62654.1| Hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365] gi|260155433|gb|EEW90513.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261745292|gb|EEY33218.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 209 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 125/195 (64%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ ++ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSNARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRL 197 YY +LLA E +++ Sbjct: 181 PYYTLLLAEEAGMKI 195 >gi|225853071|ref|YP_002733304.1| hypothetical protein BMEA_A1650 [Brucella melitensis ATCC 23457] gi|256045214|ref|ZP_05448112.1| hypothetical protein Bmelb1R_12036 [Brucella melitensis bv. 1 str. Rev.1] gi|256114166|ref|ZP_05454920.1| hypothetical protein Bmelb3E_15252 [Brucella melitensis bv. 3 str. Ether] gi|256263446|ref|ZP_05465978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260565188|ref|ZP_05835672.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991647|ref|ZP_06104204.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995485|ref|ZP_06108042.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|225641436|gb|ACO01350.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260151256|gb|EEW86350.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262766598|gb|EEZ12387.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263002431|gb|EEZ15006.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093454|gb|EEZ17504.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|326409614|gb|ADZ66679.1| conserved hypothetical protein [Brucella melitensis M28] gi|326539317|gb|ADZ87532.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 209 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 124/195 (63%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRL 197 YY +LLA E +++ Sbjct: 181 PYYTLLLAEEAGMKI 195 >gi|17986707|ref|NP_539341.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M] gi|17982330|gb|AAL51605.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M] Length = 207 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/191 (38%), Positives = 122/191 (63%), Gaps = 2/191 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 LS++DL ALLCSRICHDIISP+GAI+N LELL+E +++ M LI+ S+ +A RL+F Sbjct: 4 TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASARLQFA 63 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ ++ + Sbjct: 64 RIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNMLLIGN 122 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q YY Sbjct: 123 GAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQPYYT 182 Query: 187 ILLAHENKIRL 197 +LLA E +++ Sbjct: 183 LLLAEEAGMKI 193 >gi|260462504|ref|ZP_05810711.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259031700|gb|EEW32969.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 209 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 129/187 (68%), Gaps = 2/187 (1%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS +I GD E V F+ +++ ++ W G + L + + K+LLNL +VA Sbjct: 65 ARIAFGAAGSAGMMIDTGDAEAVAIAFLK-NEKPELVWNGIRALLPKNKVKLLLNLLLVA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYY 185 +A++PRGGK+ +++++ + E FSL +G + R P KF ++ G+ E ID+H +Q YY Sbjct: 124 NAAIPRGGKLVVTLENLETEPRFSLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183 Query: 186 VILLAHE 192 +LLA E Sbjct: 184 TLLLARE 190 >gi|163868752|ref|YP_001609969.1| hypothetical protein Btr_1642 [Bartonella tribocorum CIP 105476] gi|161018416|emb|CAK01974.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 212 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 129/208 (62%), Gaps = 7/208 (3%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 +L MDL ALLCSRICHD+ISP+GAI N++EL D+ G E+E +QL+RLS +SA RL+F Sbjct: 6 SLKPMDLAALLCSRICHDLISPVGAIQNAMELYDDGGAEEEALQLVRLSVVSASARLQFA 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG+ G+ I EQV + ++ +K + W L ++ K+LLNL ++A+ Sbjct: 66 RLAFGFAGASGGQIDTRAAEQVAQQYMQQEK-ATLKWQAPSFLLQKDEVKLLLNLLLIAN 124 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 A++ RGG++ + +N+ F +I G R P F + G V E ID+H IQFYY Sbjct: 125 ATVSRGGEIVFMIVQQENKRSFRFEIFGKTLRIPPHFLALYHGEVKEELIDAHVIQFYYT 184 Query: 187 ILLAHENKIRLLPEIID--DHNVVLSAL 212 +LL+ ++++ ID DH +VL ++ Sbjct: 185 MLLSQRTEMKI---NIDEKDHCIVLESV 209 >gi|319408929|emb|CBI82586.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 212 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 2/199 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 +L DL ALLCSRICHD+ISPIGAI N++EL DE G+E++ +QL+R S A L+F Sbjct: 6 SLKFADLTALLCSRICHDLISPIGAIQNAMELYDEGGVEEDALQLVRSSVSKASACLQFF 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG +GSVDS I EQV + ++A ++R + W + L + K+LLNL ++A+ Sbjct: 66 RLAFGASGSVDSQIDTRFAEQVAQQYMA-EERAILKWQAPTLLLPKNEVKLLLNLLLIAN 124 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186 ++ RGG++ +++ N F +I G + R P +F ++ + +E TID+H IQFYY Sbjct: 125 TTISRGGEIVVTIAQDINTRSFRFEICGQILRIPPRFVELYNKKALEETIDAHAIQFYYT 184 Query: 187 ILLAHENKIRLLPEIIDDH 205 ILLA + L D H Sbjct: 185 ILLAELTGMTLNIYETDSH 203 >gi|121602758|ref|YP_989298.1| hypothetical protein BARBAKC583_1020 [Bartonella bacilliformis KC583] gi|120614935|gb|ABM45536.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 212 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 122/199 (61%), Gaps = 2/199 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 +L S DL ALLCSR+CHD+ISPIGAI N++EL DE +++ +QL+R+S A RL+F Sbjct: 6 SLKSTDLAALLCSRLCHDLISPIGAIQNAMELYDEGCADEDALQLVRISVAKASARLQFA 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GSV I +EQV + ++A +++ + W + L ++ K LLNL +A+ Sbjct: 66 RLAFGNAGSVGCQIDTSFVEQVAQQYMA-EEKATLKWQAPSLLLPKDEVKFLLNLLFIAN 124 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 A++PRGG++ + + + F +I G + + F ++ +G + E +D+H IQ YY Sbjct: 125 ATVPRGGEIAMMILQDADTRSFRFEIYGKILKISPYFIELNNGKLPEEPVDAHTIQLYYT 184 Query: 187 ILLAHENKIRLLPEIIDDH 205 LLA + +++ +DH Sbjct: 185 ALLAEISAMKVSIHETNDH 203 >gi|240850929|ref|YP_002972329.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup] gi|240268052|gb|ACS51640.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup] Length = 212 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 132/207 (63%), Gaps = 5/207 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 +L+ DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+RLS SA RL+F Sbjct: 6 SLNPTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRLSVASAAARLQFA 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG+ G+ I EQV + ++ +++ + W + L ++ K+LLNL ++A+ Sbjct: 66 RLAFGFAGASGGQIDTRAAEQVAQQYMK-EEKATLKWQASSLLLPKDEVKLLLNLLLIAN 124 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 A++ RGG++ + + +N+ F ++ G R P F + G V E ID+H IQFYY Sbjct: 125 ATVSRGGEIVVMILQEENKRSFRFEVFGKTLRIPPHFLALFRGEVQEELIDAHVIQFYYT 184 Query: 187 ILLAHENKIRL-LPEIIDDHNVVLSAL 212 +LL+ ++++ + E +DH +VL ++ Sbjct: 185 MLLSQMTEMKINIDE--NDHCIVLESV 209 >gi|49475925|ref|YP_033966.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1] gi|49238733|emb|CAF27989.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1] Length = 212 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/195 (40%), Positives = 123/195 (63%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+R S SA R Sbjct: 2 TLAVSLESTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRWSVASASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG+ G+ I +EQV + ++ +++ + W + L + K+LLNL Sbjct: 62 LQFARLAFGFAGTSRGQIDTRSVEQVAQQYMK-EEKATLKWQIPALLLPKNEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ RGG++ + + +N++ F +I G R P F + +G + E ID+H IQ Sbjct: 121 LIANATVSRGGEIVVMIVQGENQHSFRFEICGKTLRIPSHFIALYNGEIQEEFIDAHVIQ 180 Query: 183 FYYVILLAHENKIRL 197 FYY +LLA +++ Sbjct: 181 FYYTMLLAQMTGMKI 195 >gi|49474505|ref|YP_032547.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse] gi|49240009|emb|CAF26424.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse] Length = 212 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 2/189 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISP+GAI N++EL DE G +++ +QL+R + SA R Sbjct: 2 TLAVSLKSTDLAALLCSRICHDLISPVGAIQNAMELYDEGGTDEDTLQLVRWAVASASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F+RLAFG++G+ S + EQV + ++ +++ + W + L + K+LLNL Sbjct: 62 LQFLRLAFGFSGAAGSQVDTRSAEQVAQQYMK-EEKATLKWQAPALLLPKNEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+ + RGG++ + + + + F +I G R P F + +G + E ID+ IQ Sbjct: 121 LIANTTASRGGEIVVMILQDEYKRSFRFEICGKTLRIPAHFVALYNGRIQEELIDAQVIQ 180 Query: 183 FYYVILLAH 191 FYY +LLA Sbjct: 181 FYYTMLLAE 189 >gi|319403799|emb|CBI77383.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 212 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/189 (40%), Positives = 120/189 (63%), Gaps = 2/189 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE +++V+QL+RLS +A R Sbjct: 2 TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G V+ + EQV + ++ +K + + W L ++ K+LLNL Sbjct: 62 LQFARLAFGAVGGVEDKVDTIFAEQVSQQYMKEEKAI-LKWQAASFLLPKDEIKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ +GG++ + + + ++ +F +I G + R P F ++ +G + E ID+ Q Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFEIRGKILRIPSHFIELYNGKMPEELIDARIAQ 180 Query: 183 FYYVILLAH 191 FYY ILLA Sbjct: 181 FYYTILLAE 189 >gi|319406805|emb|CBI80438.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 212 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 2/196 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE +++V+QL+RLS +A R Sbjct: 2 TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G V+ I EQV + ++ +K + + W L ++ K+LLNL Sbjct: 62 LQFARLAFGAIGGVEDKIDTIFAEQVSQQYMKEEKAI-LKWQAASFLLPKDEIKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ +GG++ + + + ++ +F I G + R P F ++ +G + E ID+ Q Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFDIRGKILRVPSHFIELYNGKMPEELIDARIAQ 180 Query: 183 FYYVILLAHENKIRLL 198 FYY ILLA ++++ Sbjct: 181 FYYTILLAEITAMKII 196 >gi|319898470|ref|YP_004158563.1| hypothetical protein BARCL_0294 [Bartonella clarridgeiae 73] gi|319402434|emb|CBI75975.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 212 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 2/189 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE G +++ +QL+RLS +A R Sbjct: 2 TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGGADEDALQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G V+ I +Q+ + ++ +++ + W + L ++ K+LLNL Sbjct: 62 LQFARLAFGSAGGVEDKIDTDFAKQISQQYMK-EEKATLKWQASSLLLQKDEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+ + G++++ + N+ +F +I G + R P +F ++ +G + E ID+H +Q Sbjct: 121 LIANTIVSHNGEISVIILQDTNKRVFRFEICGKILRTPSRFIELYNGQMSEELIDAHVVQ 180 Query: 183 FYYVILLAH 191 YY ILLA Sbjct: 181 LYYTILLAE 189 >gi|296444665|ref|ZP_06886629.1| Protein of unknown function DUF2328 [Methylosinus trichosporium OB3b] gi|296257933|gb|EFH04996.1| Protein of unknown function DUF2328 [Methylosinus trichosporium OB3b] Length = 228 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 9/202 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 F L MDL ALL SR+CHD+ISP+GAI N LE+L+E + + LI+ S+ A R Sbjct: 4 FALDPMDLAALLSSRVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSAAEASSR 63 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG GS + I GD E V +A D+R ++ W+ ++ +S+ + K+LLNL Sbjct: 64 LQFCRLAFGAAGSKGAAIDTGDAEHVTRQLLA-DERTRLEWSVPRVLMSKNKVKLLLNLC 122 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182 ++A A++PRGG +++S +++ F++ G AR ++ G E +D+ IQ Sbjct: 123 LIADATIPRGGVISVSSAGGEDDLSFTIVAKGTNARVAAAIPALLAGTPEDGAVDARAIQ 182 Query: 183 FYYVILLAH----ENKIRLLPE 200 YY L+A E +I +PE Sbjct: 183 AYYAGLVAEASGLEVEISTIPE 204 >gi|27377302|ref|NP_768831.1| hypothetical protein blr2191 [Bradyrhizobium japonicum USDA 110] gi|27350445|dbj|BAC47456.1| blr2191 [Bradyrhizobium japonicum USDA 110] Length = 237 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 6/194 (3%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDE--VMQLIRLSSMSAIIRLKFMR 68 ++L ALLCSR+CHD+ISP+GAI N LE+LD+ ED + LIR S+ +A RL+F R Sbjct: 36 LELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPEDREFALDLIRKSAKTASARLQFCR 95 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 LAFG GS + I LGD + + I D + ++W ++ L + R K+LLN+ +VA Sbjct: 96 LAFGAAGSSGAQIDLGDAQTMARGHIE-DGKCTITWNLPRLLLPKNRVKLLLNMLVVAQH 154 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++PRGG +TI F + G+ AR P+ +++ G D+H IQ YY L Sbjct: 155 TIPRGGTLTIDPVGEGETMSFRITATGHNARLPQNIAELLSGERGPAADAHAIQPYYTRL 214 Query: 189 LAHEN--KIRLLPE 200 LA + L PE Sbjct: 215 LAQACGLTVTLAPE 228 >gi|170742948|ref|YP_001771603.1| hypothetical protein M446_4839 [Methylobacterium sp. 4-46] gi|168197222|gb|ACA19169.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 215 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 5/177 (2%) Query: 19 CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L D+ G+ D + LIR S+ A RL+F R+AFG G Sbjct: 16 CSRVCHDVISPVGAIVNGLEVLEDEDDPGMRDFAIDLIRKSAKQASARLQFARIAFGAAG 75 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 SV + I L D E V + D++ +++W+ + + + K+LLNL ++A ++PRGG Sbjct: 76 SVGATIDLADAESVARGLFS-DEKTKLAWSAPRALFPKNKVKLLLNLVVIAVTTIPRGGL 134 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAH 191 + ++V +F L G+ AR P ++ G+ ES T+D+H +Q YY L+A Sbjct: 135 IDVAVTGEAEAPVFVLTCRGSHARIPAHVEALIAGSPESGTVDAHGVQPYYAGLVAR 191 >gi|220921682|ref|YP_002496983.1| hypothetical protein Mnod_1690 [Methylobacterium nodulans ORS 2060] gi|219946288|gb|ACL56680.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 215 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 5/183 (2%) Query: 19 CSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L+ + G+ D + LIR S+ A RL+F R+AFG G Sbjct: 16 CSRVCHDVISPVGAIVNGLEVLEDENDAGMRDFAIDLIRKSARQASARLQFARIAFGAAG 75 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 SV + I L D E V D++ +++W+ + + + K+LLNL ++A ++PRGG Sbjct: 76 SVGATIDLADAEGVARGLFG-DEKTKLTWSAPRALFPKNKVKLLLNLVIIAVTAIPRGGV 134 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENK 194 + ++V +F L G+ AR P ++ G ES T+D+H +Q YY L+A Sbjct: 135 IDVAVTGEAEAPVFVLTCKGSHARIPAHVEALMAGTPESGTVDAHGVQPYYAGLVARAAG 194 Query: 195 IRL 197 +++ Sbjct: 195 MQV 197 >gi|319405235|emb|CBI78840.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 212 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 72/195 (36%), Positives = 120/195 (61%), Gaps = 2/195 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE +++ +QL+RLS +A R Sbjct: 2 TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDALQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG G ++ I EQV + ++ +K V + W L ++ K+LLNL Sbjct: 62 LQFARMAFGSIGGIEDKIDTSFAEQVSQQYMKEEKAV-LKWQAASFLLPKDEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ +GG++ + + ++ +F KI G + R P F ++ +G + + +D+ Q Sbjct: 121 LIANATVVQGGEIGVVILQDTDQRLFRFKICGKMLRVPSHFIELYNGTMPKELVDARVAQ 180 Query: 183 FYYVILLAHENKIRL 197 YY +LLA +++ Sbjct: 181 LYYTVLLAEITAMKI 195 >gi|85713641|ref|ZP_01044631.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A] gi|85699545|gb|EAQ37412.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A] Length = 215 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 4/183 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ D+ + LIR S+ +A RL+F Sbjct: 13 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDNPKPDDREFALDLIRKSAKTASARLQFC 72 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GSV + I LGD + + D ++ ++W ++ L + R K+LLNL ++A Sbjct: 73 RLAFGAAGSVGAQIDLGDAQNMARGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIAQ 131 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +T+ F + G AR P+ + +D+H +Q YY Sbjct: 132 QTIPRGGVLTVDPLGEGEAMGFRITAAGQNARVPQPIADRLATGSSGVVDAHAVQPYYTR 191 Query: 188 LLA 190 LLA Sbjct: 192 LLA 194 >gi|158422707|ref|YP_001523999.1| hypothetical protein AZC_1083 [Azorhizobium caulinodans ORS 571] gi|158329596|dbj|BAF87081.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 221 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 121/215 (56%), Gaps = 6/215 (2%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58 + +S +DL ALLCSR+CHD+ISP+GAI N LE+L D + + + LI S+ Sbjct: 7 GSTVTLKVSPLDLAALLCSRVCHDVISPVGAIVNGLEVLEDEDAPDMREVALDLISKSAR 66 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 A RL+F RLAFG GS + I LGD E V+ + D R ++ W + L + R K+ Sbjct: 67 QASARLQFTRLAFGAAGSARATIDLGDAENVVRGMME-DARTKIDWMLPRELLPKNRVKL 125 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTID 177 LLNL ++A ++PRGG + ++ + + FS+ G AR P+ ++DG E +D Sbjct: 126 LLNLMLLAGMTVPRGGVIQVAAVGAAPDMGFSIASTGVSARIPQAILPLLDGVPPEGGLD 185 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +H +Q +Y LLA + + +L D V LSAL Sbjct: 186 AHAVQPFYAGLLAQDCGL-VLGFSQDGETVTLSAL 219 >gi|75674717|ref|YP_317138.1| hypothetical protein Nwi_0519 [Nitrobacter winogradskyi Nb-255] gi|74419587|gb|ABA03786.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 215 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 4/188 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ D+ + LIR S+ +A RL+F Sbjct: 13 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSARTASARLQFC 72 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GSV + I LGD + + + D ++ ++W ++ L + R K+LLNL ++A Sbjct: 73 RLAFGAAGSVSAQIDLGDAQNIAKGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIAQ 131 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +TI F + G AR + +++ + +H +Q YY Sbjct: 132 QTIPRGGVLTIDPLGEGEAMGFQITAAGLNARVSQPVAELLASGSTGAVYAHAVQPYYTR 191 Query: 188 LLAHENKI 195 LLA I Sbjct: 192 LLAEACGI 199 >gi|304394503|ref|ZP_07376424.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303293413|gb|EFL87792.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 211 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 5/207 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL 64 LS +DL AL+ SR+CHDIISP+GA+ N LE+L+E ++ M+LI S+ +A +L Sbjct: 6 KLSPLDLAALIASRVCHDIISPVGALANGLEVLEEEDSEEMKAFAMELIHKSAKTASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 KF R+AFG +GS S I G+ E+++ ++ +K + +W G + + + R K+LLNL + Sbjct: 66 KFCRIAFGASGSAGSSIDTGEAEEMVGLYMNSEK-AEYTWEGSRSFVPKNRVKLLLNLLL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 ++ ++PRGG V + + F+L+ G AR P F +++G VE I +H +Q Y Sbjct: 125 ISLGAIPRGGNVGVQIHGEGETATFTLRCVGPKARVPADFVDMMNGTVEGDITAHAVQPY 184 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211 Y ++LA + + L +++ +VV +A Sbjct: 185 YTVMLAQDCGLE-LGAVLEGEDVVFTA 210 >gi|254473075|ref|ZP_05086473.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211957796|gb|EEA92998.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 218 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/187 (42%), Positives = 120/187 (64%), Gaps = 4/187 (2%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK 65 LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED M LIR S+ A +L+ Sbjct: 7 LSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGNEDMADFAMDLIRKSARQASAKLQ 66 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F RLAFG GS + I LGD ++V +++ +++ + WT ++ L + + K++LNL ++ Sbjct: 67 FARLAFGAAGSAGASIDLGDAQEVAVGYMS-NEKANLEWTMPRLLLPKNQVKLILNLLLL 125 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 + +PRGG +TIS++ ++ F LK G AR P+ ++I+ G +D+H +Q Y Sbjct: 126 MNQCVPRGGTITISMEGDESAPNFLLKAEGTNARIPQVVSEILSGQEPERVDAHTVQPIY 185 Query: 186 VILLAHE 192 +LLA E Sbjct: 186 AVLLAGE 192 >gi|146338552|ref|YP_001203600.1| putative Signal transduction histidine kinase [Bradyrhizobium sp. ORS278] gi|146191358|emb|CAL75363.1| Conserved hypothetical protein; putative Signal transduction histidine kinase [Bradyrhizobium sp. ORS278] Length = 220 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDE--VMQLIRLSSMSAIIRLKFM 67 +++L ALLCS++CHD+ISP+GAI N LE+LD+ ED ++LIR S+ +A RL+F Sbjct: 18 TLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQFC 77 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + I D + ++W ++ L + R K+LLN+ +VA Sbjct: 78 RLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVAQ 136 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +TI F + G AR P+ ++ G ++STID+H +Q YY Sbjct: 137 QTIPRGGVLTIDPIGEGESMSFRVSATGLNARLPQNIVNLLGGELQSTIDAHAVQPYYTR 196 Query: 188 LLA 190 LLA Sbjct: 197 LLA 199 >gi|254708257|ref|ZP_05170085.1| hypothetical protein BpinM_15194 [Brucella pinnipedialis M163/99/10] gi|261315758|ref|ZP_05954955.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261304784|gb|EEY08281.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 192 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 57/136 (41%), Positives = 94/136 (69%), Gaps = 1/136 (0%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A RL+F Sbjct: 6 TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFA 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ ++ + Sbjct: 66 RIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNMLLIGN 124 Query: 128 ASLPRGGKVTISVQDS 143 ++PRGG + + ++ + Sbjct: 125 GAIPRGGSLAVRLEGA 140 >gi|148257789|ref|YP_001242374.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1] gi|146409962|gb|ABQ38468.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1] Length = 220 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 111/183 (60%), Gaps = 4/183 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDE--VMQLIRLSSMSAIIRLKFM 67 +++L ALLCS++CHD+ISP+GAI N LE+LD+ ED ++LIR S+ +A RL+F Sbjct: 18 TLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQFC 77 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + I D + ++W ++ L + R K+LLN+ +VA Sbjct: 78 RLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVAQ 136 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +T+ F + G AR P+ ++ G +STID+H +Q YY Sbjct: 137 QTIPRGGVLTVDPIGEGETMSFRVAATGLNARLPQNIVNLLAGAQQSTIDAHAVQPYYTR 196 Query: 188 LLA 190 LLA Sbjct: 197 LLA 199 >gi|209886231|ref|YP_002290088.1| hypothetical protein OCAR_7117 [Oligotropha carboxidovorans OM5] gi|209874427|gb|ACI94223.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 212 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 116/204 (56%), Gaps = 4/204 (1%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDE--VMQLIRLSSMSAIIRLKFM 67 ++DL ALL SR+CHD+I+P+GAI N LE++D ED+ + LIR S++S RL+F Sbjct: 10 ALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQFC 69 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+A+G GS + I LGD ++V + D + +++W + L + R K+LLN+ ++A Sbjct: 70 RIAYGAAGSAGTQIDLGDAQKVARGHLE-DAKTKITWNLPHMLLPKNRVKLLLNMMVIAQ 128 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG++ I F ++ G AR P + ++ +++ +H +Q YY Sbjct: 129 QAIPRGGELVIDPLGEGETMGFRIRAVGQNAREPHGIAEQLNPENAASVTAHAVQPYYTA 188 Query: 188 LLAHENKIRLLPEIIDDHNVVLSA 211 LLA ++ DD V+ +A Sbjct: 189 LLAQACGFKVSMTKEDDAVVIATA 212 >gi|154252620|ref|YP_001413444.1| hypothetical protein Plav_2173 [Parvibaculum lavamentivorans DS-1] gi|154156570|gb|ABS63787.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 222 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 111/188 (59%), Gaps = 5/188 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64 ++S+++L AL+CSR+CHD+ISP+GAI N LE+L D+ ++ M+LI S+ A +L Sbjct: 8 DVSALELAALMCSRVCHDVISPVGAIINGLEVLADDDDPEMKAHAMELITKSAAQASAKL 67 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RL FG GS + + L D + V E + + +R ++W + ++ K+LLN+ + Sbjct: 68 QFARLCFGAAGSASAELDLQDAKAVAEGLM-MGERAALTWNAPAATIGKDYVKLLLNMIL 126 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183 + A++PRGG+V +SV + ++ G AR PE+ + + G + + +D+ Q Sbjct: 127 IGMAAIPRGGEVAVSVDGELAKPTLRIRSTGQAARIPEETAKFLGGRSPDRFLDARAAQP 186 Query: 184 YYVILLAH 191 Y+ L+A Sbjct: 187 YFTGLVAR 194 >gi|115526278|ref|YP_783189.1| hypothetical protein RPE_4285 [Rhodopseudomonas palustris BisA53] gi|115520225|gb|ABJ08209.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 6/195 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 S++L ALLCSR+CHD+ISP+GAI N LE+LD+ ++ + LIR S+ +A RL+F Sbjct: 22 SLELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKPEDREFALDLIRKSAKTASARLQFC 81 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + DK ++ W ++ + + RAK+LLN+ ++A Sbjct: 82 RLAFGAAGSAGAQIDLGDALNMARGHLEDDK-TKIEWNLPRVLMPKNRAKLLLNMLVIAQ 140 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +T+ F + NG AR P +++ +S ID+H +Q YY Sbjct: 141 QTIPRGGVLTVDPIGEGEAMAFRVAANGLNARTPHNVVEMLSTGPKSAIDAHAVQPYYTR 200 Query: 188 LLAHENKIR--LLPE 200 LLA +R L PE Sbjct: 201 LLAEACGLRVSLAPE 215 >gi|91978143|ref|YP_570802.1| hypothetical protein RPD_3679 [Rhodopseudomonas palustris BisB5] gi|91684599|gb|ABE40901.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 217 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 118/195 (60%), Gaps = 6/195 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 15 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQFC 74 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + + D++ +++W ++ L++ R K+LLN+ ++A Sbjct: 75 RLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKIAWNLPRLLLAKNRVKLLLNMLIIAQ 133 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +TI + F + G AR P+ +++ G+ I+SH +Q YY Sbjct: 134 QTIPRGGTLTIDPVGEGDNLSFRVIAAGLNARMPQNIAEMLSGSHAGPIESHGVQPYYTR 193 Query: 188 LLAHEN--KIRLLPE 200 LLA + L PE Sbjct: 194 LLAQACGLAVTLAPE 208 >gi|328542567|ref|YP_004302676.1| hypothetical protein SL003B_0947 [polymorphum gilvum SL003B-26A1] gi|326412313|gb|ADZ69376.1| hypothetical protein SL003B_0947 [Polymorphum gilvum SL003B-26A1] Length = 214 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 4/188 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64 +LSS+DL AL+ SRICHDIISP+GAI N LE+LDE G ED M LIR S+ A +L Sbjct: 6 DLSSLDLSALVSSRICHDIISPVGAIINGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RLAFG GS + I LGD + V F+ +++ + W ++ + + K+LLNL + Sbjct: 66 QFARLAFGAAGSAGAEIDLGDAQVVASGFME-NEKSNLIWQVDRHLMPKNFVKLLLNLVL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 +A+ +PRGG +T+S+ +F+L+ G R P + + G +D+H +Q Sbjct: 125 IANQCVPRGGDITVSMTGEPAAPVFTLEAKGLNPRIPLGMQETLGGQEPERVDAHSVQPI 184 Query: 185 YVILLAHE 192 Y LLA E Sbjct: 185 YTFLLARE 192 >gi|154247415|ref|YP_001418373.1| hypothetical protein Xaut_3487 [Xanthobacter autotrophicus Py2] gi|154161500|gb|ABS68716.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 226 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 114/195 (58%), Gaps = 5/195 (2%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI 61 + +S++DL ALLCSR+CHD+ISP+GAI N LE+L D + D + LI S+ A Sbjct: 16 VTLAVSALDLGALLCSRVCHDVISPVGAIVNGLEVLEDEDAADMRDVALDLIAKSARQAS 75 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 RL+F RLAFG GS + + LGD EQV+ I D R +V W+ + L + R K+LLN Sbjct: 76 ARLQFTRLAFGAAGSAGARLDLGDAEQVVRPVIE-DGRTRVEWSLPRELLPKNRVKLLLN 134 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHD 180 L ++A ++PRGG + IS + F L G AR PE +VDG E +D+H Sbjct: 135 LVLLAGTTIPRGGVIRISAVGEGDATGFVLASTGEKARIPEGLQALVDGVAPEGGLDAHS 194 Query: 181 IQFYYVILLAHENKI 195 +Q +Y +LA + I Sbjct: 195 VQPFYAGMLARDCAI 209 >gi|39934696|ref|NP_946972.1| hypothetical protein RPA1626 [Rhodopseudomonas palustris CGA009] gi|192290212|ref|YP_001990817.1| hypothetical protein Rpal_1816 [Rhodopseudomonas palustris TIE-1] gi|39648546|emb|CAE27067.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] gi|192283961|gb|ACF00342.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 218 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 116/195 (59%), Gaps = 6/195 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ ++LIR S+ +A RL+F Sbjct: 16 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALELIRKSAKTASARLQFC 75 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + + DK +++W ++ L++ R K+LLN+ ++A Sbjct: 76 RLAFGAAGSAGAQIDLGDAQNMARGHLEDDK-TKLTWNLPRLLLAKNRVKLLLNMLVIAQ 134 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +TI + F + G AR P +++G I+SH +Q YY Sbjct: 135 QTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYTR 194 Query: 188 LLAHEN--KIRLLPE 200 LLA + L PE Sbjct: 195 LLAQACGLTVSLAPE 209 >gi|86751029|ref|YP_487525.1| hypothetical protein RPB_3921 [Rhodopseudomonas palustris HaA2] gi|86574057|gb|ABD08614.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 217 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 118/195 (60%), Gaps = 6/195 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 15 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQFC 74 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + + D++ +++W ++ L++ R K+LLN+ ++A Sbjct: 75 RLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKLAWNLPRVLLAKNRVKLLLNMLIIAQ 133 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +T+ + F + G AR P+ + ++G+ ++SH +Q YY Sbjct: 134 QTIPRGGTLTVDPVGEGDNLSFRVVAAGLNARMPQNIVEKLNGSHAGPVESHGVQPYYTR 193 Query: 188 LLAHEN--KIRLLPE 200 LLA + L PE Sbjct: 194 LLAESCGLAVTLAPE 208 >gi|316935206|ref|YP_004110188.1| hypothetical protein Rpdx1_3895 [Rhodopseudomonas palustris DX-1] gi|315602920|gb|ADU45455.1| Protein of unknown function DUF2328 [Rhodopseudomonas palustris DX-1] Length = 218 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 115/195 (58%), Gaps = 6/195 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 16 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSAKTASARLQFC 75 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + + DK +++W ++ L++ R K+LLN+ ++A Sbjct: 76 RLAFGAAGSAGAQIDLGDAQNMARGHLEDDK-TKLTWNLPRLLLAKNRVKLLLNMLIIAQ 134 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +TI + F + G AR P +++G I+SH +Q YY Sbjct: 135 QTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYTR 194 Query: 188 LLAHEN--KIRLLPE 200 LLA + L PE Sbjct: 195 LLAQACGLTVSLAPE 209 >gi|299134357|ref|ZP_07027550.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2] gi|298591104|gb|EFI51306.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2] Length = 213 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 4/184 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDE--VMQLIRLSSMSAIIRLKFM 67 ++DL ALL SR+CHD+I+P+GAI N LE++D ED+ + LIR S++S RL+F Sbjct: 10 ALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQFC 69 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+A+G GS + I LGD ++V + D + +++W + L++ R K+LLN+ ++A Sbjct: 70 RIAYGAAGSAGTQIDLGDAQKVARGHLE-DGKTKLTWNLPHMLLAKNRVKLLLNMLVIAQ 128 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG++ I + F ++ G AR P ++ ++I +H +Q YY Sbjct: 129 QAIPRGGELVIDPIGEGDTMGFRIRAVGANAREPHSIADQLNLENAASITAHAVQPYYTA 188 Query: 188 LLAH 191 LLA Sbjct: 189 LLAQ 192 >gi|182678005|ref|YP_001832151.1| hypothetical protein Bind_1019 [Beijerinckia indica subsp. indica ATCC 9039] gi|182633888|gb|ACB94662.1| conserved hypothetical protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 222 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 128/206 (62%), Gaps = 7/206 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIR 63 F+L MDL ALLCSR+CHD+ISP+GAI N LE+L+E E + + LI+ S+ +A R Sbjct: 4 FSLDPMDLAALLCSRVCHDVISPVGAIVNGLEILEEEKEESQRELALDLIKKSAETASAR 63 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG GS +LI GD E+V+ A + R + W ++ +++++ K++LNL Sbjct: 64 LQFCRLAFGAAGSAGALIDTGDAERVMRGLFA-EGRSTLEWHAPRVLMAKDKVKLILNLC 122 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182 ++A A+LPRGG V+++++ + + + G AR + ++ G ++ ++D+H IQ Sbjct: 123 LIAMAALPRGGVVSVTIEGGETPSHIKIDAQGTNARLAQHVPSLLAGAPDTGSVDAHGIQ 182 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVV 208 +Y L+A + L +II + N+V Sbjct: 183 AFYTGLVAKSAGMTL--DIIAEPNLV 206 >gi|217978669|ref|YP_002362816.1| hypothetical protein Msil_2530 [Methylocella silvestris BL2] gi|217504045|gb|ACK51454.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 227 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 11/196 (5%) Query: 19 CSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L+ + + E +QLIR S+ +A RL+F RLAFG G Sbjct: 16 CSRVCHDVISPVGAIVNGLEILEDEKDADMRAEALQLIRASAENASARLQFCRLAFGAAG 75 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I GD E+V + D ++++ W ++ L + + K++LNL ++A A++PRGG Sbjct: 76 SAGASIDTGDAEKVARGLFS-DAKIKLDWRAPRVLLPKNKVKLILNLCLIASAAIPRGGV 134 Query: 136 VTIS--VQDSKN---ENIFSLKI--NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 +T+ D+K E +L++ G A+ I+ G ID+H IQ YY L Sbjct: 135 ITVETITADAKEGALEPTIALRVIAQGTNAKLAPLTAAILAGAPAEAIDAHAIQPYYAAL 194 Query: 189 LAHENKIRLLPEIIDD 204 +A + L E D Sbjct: 195 VAQAAGMSLKAETGAD 210 >gi|218529783|ref|YP_002420599.1| hypothetical protein Mchl_1808 [Methylobacterium chloromethanicum CM4] gi|218522086|gb|ACK82671.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 246 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 119/195 (61%), Gaps = 5/195 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+ N L ++DL ALLCSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ Sbjct: 1 MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V + A D++ Q++W+ + + + K Sbjct: 61 RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176 +LLNL ++A +++PRGG + ++V + F L+ G+ AR P ++ G E T+ Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179 Query: 177 DSHDIQFYYVILLAH 191 D+H I +Y L+A Sbjct: 180 DAHGILPFYAGLVAR 194 >gi|163850955|ref|YP_001638998.1| hypothetical protein Mext_1528 [Methylobacterium extorquens PA1] gi|254560648|ref|YP_003067743.1| hypothetical protein METDI2193 [Methylobacterium extorquens DM4] gi|163662560|gb|ABY29927.1| conserved hypothetical protein [Methylobacterium extorquens PA1] gi|254267926|emb|CAX23794.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 246 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 119/195 (61%), Gaps = 5/195 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+ N L ++DL ALLCSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ Sbjct: 1 MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V + A D++ Q++W+ + + + K Sbjct: 61 RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176 +LLNL ++A +++PRGG + ++V + F L+ G+ AR P ++ G E T+ Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179 Query: 177 DSHDIQFYYVILLAH 191 D+H I +Y L+A Sbjct: 180 DAHGILPFYAGLVAR 194 >gi|240138087|ref|YP_002962559.1| hypothetical protein MexAM1_META1p1420 [Methylobacterium extorquens AM1] gi|240008056|gb|ACS39282.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 246 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 108/177 (61%), Gaps = 5/177 (2%) Query: 19 CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ +A R++F R+AFG G Sbjct: 19 CSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSARTASARIQFARIAFGAAG 78 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I L D E+V + A D++ Q++W+ + + + K+LLNL ++A +++PRGG Sbjct: 79 SAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVKLLLNLVVIASSAIPRGGL 137 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAH 191 + ++V + F L+ G+ AR P ++ G E T+D+H I +Y L+A Sbjct: 138 IDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTVDAHGILPFYAGLVAR 194 >gi|90425721|ref|YP_534091.1| hypothetical protein RPC_4248 [Rhodopseudomonas palustris BisB18] gi|90107735|gb|ABD89772.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 219 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 4/184 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 17 ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKQEDREFALDLIRKSARTASARLQFC 76 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + + DK ++ W +I L + + K+LLN+ ++A Sbjct: 77 RLAFGAAGSAGAQIDLGDAQNMARGHLEDDK-TKIEWNLPRILLPKNKVKLLLNMLVIAQ 135 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +T+ + F + +G AR ++ G +ID+H +Q YY Sbjct: 136 QTIPRGGVLTVEAVGEGDAMGFRVAASGLNARTQTNIVDMLSGAHAGSIDAHAVQPYYTR 195 Query: 188 LLAH 191 LLA Sbjct: 196 LLAQ 199 >gi|92118838|ref|YP_578567.1| hypothetical protein Nham_3377 [Nitrobacter hamburgensis X14] gi|91801732|gb|ABE64107.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 215 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 107/188 (56%), Gaps = 4/188 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ D+ + LIR S+ +A RL+F Sbjct: 13 TLELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSAKTASARLQFC 72 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG GS + I LGD + + + D ++ ++W ++ L + R K+LLNL ++A Sbjct: 73 RLAFGAAGSAGAQIDLGDAQNMAKGHFE-DGKITIAWNLPRLLLPKNRVKLLLNLLVIAQ 131 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++PRGG +T+ F + G AR + ++ +D+H +Q YY Sbjct: 132 QTIPRGGVLTVDPLGEGEAMGFQITAAGLNARLSQTTADLLASGPAGAVDAHAVQPYYTR 191 Query: 188 LLAHENKI 195 LLA I Sbjct: 192 LLAEACGI 199 >gi|298292567|ref|YP_003694506.1| hypothetical protein Snov_2592 [Starkeya novella DSM 506] gi|296929078|gb|ADH89887.1| Protein of unknown function DUF2328 [Starkeya novella DSM 506] Length = 215 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 103/187 (55%), Gaps = 12/187 (6%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRLAFG 72 CSR+CHD+ISP+GAI N LE+LD+ ED+ + LI S+ A RL+F RLAFG Sbjct: 17 CSRVCHDVISPVGAIVNGLEVLDD---EDDPSMKAFALDLIAKSAKQASARLQFARLAFG 73 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 GS + I GD E+V FI D R V W ++ + + K+LLNL +VA +++PR Sbjct: 74 AAGSAGAQIDTGDAEKVARGFIE-DDRTSVEWHVPRVLSPKNKVKLLLNLMVVATSTIPR 132 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYVILLA 190 GGK+ + +E F L G+ +R P ++ G +D+H IQ +Y LLA Sbjct: 133 GGKILVIATGEGDEGGFRLTTEGSHSRIPPHLIALLAGEAPEGGALDAHAIQPHYTGLLA 192 Query: 191 HENKIRL 197 RL Sbjct: 193 RAAGYRL 199 >gi|188580968|ref|YP_001924413.1| hypothetical protein Mpop_1715 [Methylobacterium populi BJ001] gi|179344466|gb|ACB79878.1| conserved hypothetical protein [Methylobacterium populi BJ001] Length = 250 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 5/177 (2%) Query: 19 CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ +A R++F R+AFG G Sbjct: 23 CSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSARTASARVQFARIAFGAAG 82 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I L D E+V A D++ Q++W+ + + + K+LLNL ++A +++PRGG Sbjct: 83 SAGASIDLADAEKVSRAMFA-DEKTQITWSAPQALFPKNKVKLLLNLVVIASSAIPRGGV 141 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAH 191 + ++V + L+ G+ AR P ++ G E ++D+H I +Y L+A Sbjct: 142 IDVAVTGGGDAPRLVLRAKGSHARIPPHVEALIAGTPEGGSVDAHGILPFYAGLVAR 198 >gi|46203314|ref|ZP_00051697.2| hypothetical protein Magn03005939 [Magnetospirillum magnetotacticum MS-1] Length = 246 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 5/177 (2%) Query: 19 CSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISPIGAI N LE+L+ + + + ++LIR S+ +A R++F R+AFG G Sbjct: 19 CSRVCHDVISPIGAIVNGLEVLEDDNDPSMREFALELIRKSARTASARVQFARIAFGAAG 78 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I L D E+V A D++ Q++W+ + + + K+LLNL ++A ++PRGG Sbjct: 79 SAGASIDLADAEKVSRAMFA-DEKTQIAWSAPQALFPKNKVKLLLNLVVIASGAIPRGGL 137 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAH 191 + ++V F L+ G+ AR P ++ G E T+D+H I +Y L++ Sbjct: 138 IDVAVTGGGEAPRFVLRAKGSHARIPPHVEALIAGTPEGGTVDAHGILPFYAGLVSR 194 >gi|170750431|ref|YP_001756691.1| hypothetical protein Mrad2831_4036 [Methylobacterium radiotolerans JCM 2831] gi|170656953|gb|ACB26008.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 236 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 9/179 (5%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKFMRLAFGY 73 CSR+CHD+ISP+GAI N LE+L++ +DE M +LI S+ A RLKF R+AFG Sbjct: 21 CSRVCHDVISPVGAIVNGLEVLED--DQDESMRTFALELIGKSARQASARLKFARIAFGA 78 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 GS + I L D E V + A D + +++W+ + + + K+LLNL M+A +++PRG Sbjct: 79 AGSAGASIDLADAESVAKGMFA-DDKTKLTWSAPQALFPKNKVKLLLNLVMIATSAIPRG 137 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAH 191 G + + V LK G+ AR P +++ G ES T+D+H I +Y L+A Sbjct: 138 GVIDVVVSGDGEAPTLVLKAKGSHARIPPHVEELMAGRPESGTVDAHGILPFYAGLVAR 196 >gi|90419034|ref|ZP_01226945.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337114|gb|EAS50819.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 208 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 110/181 (60%), Gaps = 3/181 (1%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 ++CHDIISP+ I + LELLD++ + E M+L+R S SA+ +L+F R+AFG GS + Sbjct: 19 KLCHDIISPVFGIQSGLELLDDMPNDPESMELVRHSLKSAVAKLQFARIAFGAAGSQTAT 78 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140 I L D + V ++ +K + W GE +++ KI+LNL ++A+AS+ RGG++ + V Sbjct: 79 IDLNDAKTVANGYMNHEK-AAIVWEGEPGYVAKNFVKIILNLIVLANASISRGGEIKV-V 136 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLP 199 +S + +++ G+ R + +++G+V + +D+ IQ YY + LA E+ + + Sbjct: 137 IESIDPPRATVRATGDRIRIQPRLMALLNGDVAQEAMDAQTIQPYYTLFLAQESGLTVAH 196 Query: 200 E 200 E Sbjct: 197 E 197 >gi|118588302|ref|ZP_01545711.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614] gi|118439008|gb|EAV45640.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614] Length = 214 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64 LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED M LIR S+ A +L Sbjct: 6 ELSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RLAFG GS + I LGD + V F+ +++ ++W + + + K+LLNL + Sbjct: 66 QFARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLNWQLSRHLMPKNYVKLLLNLIL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 +A+ +PRGG++ + ++ F+L+ +G R P + + G +D+H +Q Sbjct: 125 IANQCVPRGGEIKVEMEGDPQSPAFTLQASGLNPRIPLGMKETLGGEEPERVDAHSVQPI 184 Query: 185 YVILLAHE 192 Y +LLA E Sbjct: 185 YTLLLARE 192 >gi|323137584|ref|ZP_08072661.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242] gi|322397210|gb|EFX99734.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242] Length = 231 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 5/175 (2%) Query: 21 RICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 R+CHD+ISP+GAI N LE+L+E + + LI+ S+ A RL+F RLAFG GS Sbjct: 18 RVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSANEASARLQFCRLAFGAAGSK 77 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 + I GD E V +A D+R Q++W+ ++ +S+ + K+LLNL ++A A++PRGG ++ Sbjct: 78 GASIDTGDAELVTRQLLA-DERTQLNWSVPRVLMSKNKVKLLLNLCLLADAAIPRGGVIS 136 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAH 191 +S + F ++ G AR ++ G E ID+ IQ YY L+A Sbjct: 137 VSSTGEDDRIAFRIEAKGTNARVAANIPALLAGEAEEGAIDARAIQPYYAGLVAK 191 >gi|300022395|ref|YP_003755006.1| hypothetical protein Hden_0868 [Hyphomicrobium denitrificans ATCC 51888] gi|299524216|gb|ADJ22685.1| Protein of unknown function DUF2328 [Hyphomicrobium denitrificans ATCC 51888] Length = 216 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 7/213 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 M++ + ++L AL+ SRICHDII+P+GAI N LE+LDE + + +IR + Sbjct: 1 MSQRAPVPPTDLELAALISSRICHDIINPVGAIFNGLEILDEDDDAQAKSYALNVIRNVT 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERA 116 A RL+F R AFG GS ++I L E++ F+ + + + ++ W G +++++ Sbjct: 61 EQASARLEFARFAFGAAGSAGAMIDLTTAEKISRGFVKITQGKHKLIWRGAPGFVAKDKV 120 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 K+LLNL + +LPRGG++ +++ S + F ++ G AR P+ T V GN + Sbjct: 121 KLLLNLIASSVTALPRGGEIDVAIAGSFEQPSFLIRCKGTSARPPQYLTDFVAGN-PLAL 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 D+ IQ YY +A +RL EI+ D +L Sbjct: 180 DAMSIQAYYTWRIAPTAGMRL--EILKDGADIL 210 >gi|307944607|ref|ZP_07659947.1| putative Signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307772356|gb|EFO31577.1| putative Signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 214 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 109/187 (58%), Gaps = 4/187 (2%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLK 65 L S+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED M LIR S+ A +L+ Sbjct: 7 LPSLDLSALVASRVCHDIISPVGAITNGLEVLDEDGAEDMRDFAMDLIRKSARQASAKLQ 66 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F RLAFG GS + I LGD + V F+ +++ + W + + + K+LLNL ++ Sbjct: 67 FARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLDWQVTRHLMPKNYVKLLLNLILI 125 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A+ +PRGG + ++++ + F L +G R P + ++G +D+H +Q Y Sbjct: 126 ANQCVPRGGTIKVTMEGEPSSPSFELVASGQNPRIPIGMKETLEGTEPERVDAHSVQPIY 185 Query: 186 VILLAHE 192 LLA E Sbjct: 186 TFLLAKE 192 >gi|254500736|ref|ZP_05112887.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11] gi|222436807|gb|EEE43486.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11] Length = 205 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 4/189 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFMR 68 MDL AL+ SR+CHDIISP+GAI N LE+LDE G ED M LIR S+ A +L+F R Sbjct: 1 MDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKLQFAR 60 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 LAFG GS + I LGD + V F+ +++ ++W E+ + + K+LLNL ++A+ Sbjct: 61 LAFGAAGSAGAEIDLGDAQVVATGFME-NEKSNLNWQLERHLMPKNFVKLLLNLILIANQ 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 +PRGG++ + + + F+L G R P + + G +D+H +Q Y +L Sbjct: 120 CVPRGGEIKVEMSGTPQSPSFTLNAAGLNPRIPLGMKETLSGEEPERVDAHSVQPIYSLL 179 Query: 189 LAHENKIRL 197 LA E + L Sbjct: 180 LARECGMEL 188 >gi|85707642|ref|ZP_01038708.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1] gi|85689176|gb|EAQ29179.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1] Length = 217 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 5/210 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKF 66 S DL ALLCSR+CHD++SP+GA+ N LELL DE E + ++L+ S+ + +LKF Sbjct: 3 SQTDLAALLCSRLCHDMLSPVGALSNGLELLADETDAEMRERCIELLEQSAKISTDKLKF 62 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG G + + + ++VI A KRV+V+W L + K++LNL +A Sbjct: 63 FRLAFGAAGGFGENVPVEEAQEVIGALAADAKRVEVNWALADSTLPKPAVKVMLNLAQIA 122 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYY 185 +L RGG + I + + + G F E Q + G + +S I S + Sbjct: 123 LDALVRGGTLDIGAEKREGNIEIVARAAGQRIAFDETIGQALQGELADSDISSRTAAAHM 182 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + L+A E L + DD +VL A+L + Sbjct: 183 IALVAGEMGGGLQYAVSDDA-LVLGAVLPE 211 >gi|114705528|ref|ZP_01438431.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506] gi|114538374|gb|EAU41495.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506] Length = 230 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 3/174 (1%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S+ICHDIISP+ + + LELLD++ + E M L+R S +A+ +L+F R+A+G +GS + Sbjct: 40 SKICHDIISPVFGVQSGLELLDDMPDDAESMGLVRNSCKAAVGKLQFARMAYGASGSQTA 99 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 I L D + E ++A +K V WTGE + AK +LNL ++A +S+ RGG+VT++ Sbjct: 100 AIDLNDAKTTAEGYMAHEKPDLV-WTGEPGYAPKNFAKAVLNLIVLATSSISRGGEVTVA 158 Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHE 192 ++ + + ++ R +++G I++ IQ YY++ A+E Sbjct: 159 IE-ATDPGRATVTAKAQRIRIQPDTIALIEGTYNGEAINAQTIQPYYMLFCANE 211 >gi|114569208|ref|YP_755888.1| hypothetical protein Mmar10_0657 [Maricaulis maris MCS10] gi|114339670|gb|ABI64950.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 227 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 5/201 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 M ++ L + L ALLC+R+CHD++SP+ A+ +L + D+ + ++ M+L+R SS Sbjct: 5 MQDDLPAELPADQLAALLCARLCHDLVSPVSALGAALSVFDDPDSADMHEDAMELVRESS 64 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 A +L+F RLAFG GS ++ +++++ E + K ++ W E L ++ A+ Sbjct: 65 RQAQAKLEFCRLAFGAGGSAPGIMDSRELQRLTEAMFSSVK-PEIVWKVESAGLEKQAAR 123 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTI 176 +LLN+ ++ + PRGG VTI ++ + G AR + ++ E+ Sbjct: 124 LLLNMCLLGVDAAPRGGTVTIEGAETGGGARLRVISEGPRARLEPGTARALEALAPENGY 183 Query: 177 DSHDIQFYYVILLAHENKIRL 197 D IQ YY L+A N R+ Sbjct: 184 DGRSIQPYYTGLIARSNGGRV 204 >gi|149187048|ref|ZP_01865355.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21] gi|148829337|gb|EDL47781.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21] Length = 219 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM 67 S+DL A+LCSR+CHD++SP+GA++N LELL D+ + V+ L+ S+ ++ +LKF Sbjct: 6 SIDLAAMLCSRLCHDMLSPVGALNNGLELLAMEDDPEMRKNVIALLEQSATTSTNKLKFF 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G + + + +I+ +A ++++ W E +L++ K+LLN +A Sbjct: 66 RLAFGAAGGFGDRVDVQEPRALIDALVADKDKIEIHWAIEAANLAKPAVKVLLNFAQIAI 125 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 +L RGG + I + ++ G F + + +DG++ + S ++I Sbjct: 126 DALVRGGTLDIGAEVRDGNCEIVVRATGTKVAFDDNIGKAIDGSLPHSELSSRTAAAHMI 185 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 L E L D +VL A+L + Sbjct: 186 HLLAEGSGGGLQYARTDETLVLGAVLPE 213 >gi|218662514|ref|ZP_03518444.1| hypothetical protein RetlI_25280 [Rhizobium etli IE4771] Length = 100 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 49/81 (60%), Positives = 62/81 (76%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 18 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 77 Query: 61 IIRLKFMRLAFGYTGSVDSLI 81 +RLKF RLAFG +GSV + I Sbjct: 78 SVRLKFARLAFGASGSVGASI 98 >gi|332185707|ref|ZP_08387454.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17] gi|332014065|gb|EGI56123.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17] Length = 214 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 4/191 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEV--GIEDEVMQLIRLSSMSAIIR 63 +S +D +LLCSR+CHD++SP+GA++N LELL DE + M+L+ S+ ++ + Sbjct: 1 MTVSPVDFASLLCSRLCHDLLSPVGALNNGLELLADETDPAMRARCMELLADSARASANK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G + + + + +E + ++R + W E L + +IL+NL Sbjct: 61 LKFFRLAFGAGGGFSDRVDMAEAKAAVEGLLVDNRRTTLGWLVEAPSLPKPAVRILVNLA 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQ 182 ++A +L RGG + I + + ++++ G PE +++G + S Sbjct: 121 LIAVEALARGGTIDIGAEAGREAIEIAIRLEGPRILLDPEIRRTLMEGQGTEPLGSRTAP 180 Query: 183 FYYVILLAHEN 193 + + L E+ Sbjct: 181 AFLIHTLTVEH 191 >gi|83859260|ref|ZP_00952781.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii HTCC2633] gi|83852707|gb|EAP90560.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii HTCC2633] Length = 225 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 7/209 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 ++ +L ALL SR+CHDI P A+ +L +LD+ + + D+ + L+R + +L++ Sbjct: 8 TAAELAALLSSRVCHDIAGPTSAMGAALSVLDDESALDMRDDAIALLRTGAKQIRAKLEY 67 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+ FG GS + L +I+ + E D R + W + +S+ A++LLNL + Sbjct: 68 ARVCFGAAGSRGGEVSLSEIKSLAEPMFE-DSRPDLVWPSDGGAISKTAARVLLNLIWIG 126 Query: 127 HASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFY 184 SLPRGG+V I S + + G R E + + + G E D +Q Y Sbjct: 127 VDSLPRGGEVIIEASASSDGGARLRVAAKGMRLRLDEAYQKAIRGERPEDGYDGRSVQPY 186 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213 Y L+A E+ R +D V L+AL+ Sbjct: 187 YAGLIARESGGRAEAR-LDGDRVELAALI 214 >gi|296284605|ref|ZP_06862603.1| hypothetical protein CbatJ_13301 [Citromicrobium bathyomarinum JL354] Length = 226 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 11/149 (7%) Query: 9 LSSMD------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59 +S MD L + LCSR+CHD++SP+GA+ N LELL + + +L+ S+ + Sbjct: 1 MSGMDETDPLLLASQLCSRLCHDMLSPVGALTNGLELLADEKDPQMRQRCFELLEQSART 60 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 + +LKF RLAFG G + + + + VIE A KRV+++W E +S+ AK++ Sbjct: 61 SAAKLKFFRLAFGAAGGFGEQVSIDEPKAVIETLAADAKRVELNWAIEAASVSKSAAKVM 120 Query: 120 LNLFMVAHASLPRGGK--VTISVQDSKNE 146 LNL + +L RGG V I V+D E Sbjct: 121 LNLANIGLDALVRGGTLDVGIEVRDDATE 149 >gi|83309426|ref|YP_419690.1| hypothetical protein amb0327 [Magnetospirillum magneticum AMB-1] gi|82944267|dbj|BAE49131.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 205 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 10/189 (5%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LLC+R+CHD+ SP+GA LELL++ G + E ++L+ S +A RLKF+R G Sbjct: 12 LLCARLCHDLASPLGAAAAGLELLED-GNDPETLELVSASMGAATARLKFLRATLGPAND 70 Query: 77 VD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + + LGD+ + AV + + W+ E+ ++ E ++ LNL ++A +LPRGGK Sbjct: 71 MPHTQKSLGDLMRAYLSG-AVTGGITLDWSSERPEIDGETGRLRLNLVLIARDALPRGGK 129 Query: 136 VTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 + S ++ L++ + E ++DG S Q + + LAH Sbjct: 130 ILARCAGSGSDGEAGLRVTASGEGMGLTAEARLVLLDGAPPS--GPRGAQAGFALHLAHR 187 Query: 193 N--KIRLLP 199 N KIRL P Sbjct: 188 NGLKIRLTP 196 >gi|294678519|ref|YP_003579134.1| hypothetical protein RCAP_rcc03000 [Rhodobacter capsulatus SB 1003] gi|294477339|gb|ADE86727.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003] Length = 210 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMR 68 S DLVAL+ SR+CHD+ISP+GAI N +ELL+ G+ D +QLI S +A R+KF R Sbjct: 17 SEADLVALVGSRLCHDLISPLGAIGNGVELLNMSGLADSPEVQLISQSVAAANARIKFFR 76 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG SVD IG +I V+E+ I+ RV+ W G D SR K++ + Sbjct: 77 IAFGQA-SVDQRIGTPEILGVLEE-ISRGGRVKYHWLGAG-DQSRRVVKLIFLGLLCLEP 133 Query: 129 SLPRGGKVTISVQDSK 144 +LP GG+V I+ +D + Sbjct: 134 ALPWGGEVVITEEDGE 149 >gi|87201062|ref|YP_498319.1| hypothetical protein Saro_3050 [Novosphingobium aromaticivorans DSM 12444] gi|87136743|gb|ABD27485.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 213 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIR 63 +S++DL +LLCSR+CHD++SP+GA+ N LELL DE E +L+ S+ ++ + Sbjct: 1 MTVSALDLASLLCSRLCHDMLSPVGALSNGLELLADEKDPEMRQRCFELLEQSAKASADK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G + + + +++ + + RV V+W L + K LLNL Sbjct: 61 LKFFRLAFGAAGGFGEQVPVNEARPLVDALVGANGRVAVNWMFGVDSLPKPAVKTLLNLA 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +L RGG + + + ++ G F Q ++G + ++ Sbjct: 121 LIGLDALVRGGTLDVGAEVRDGVTEIVVRAAGQRIAFDPAIGQALEGALPTS 172 >gi|94497524|ref|ZP_01304093.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58] gi|94422941|gb|EAT07973.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58] Length = 221 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-DEV--GIEDEVMQLIRLSSMSAIIRLKFM 67 S++ +LLCSR+CHD++SP+GA++N LEL+ DE + + + L+ S+ ++ +LKF Sbjct: 13 SIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPAMRERCLDLLGDSARTSANKLKFF 72 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G + + + IE A RV+V W ++ L + AKILLNL ++A Sbjct: 73 RLAFGSAGGFGEAVPPHEAKVAIEGMFAGAGRVKVGWMVDEQMLGKLAAKILLNLALIAG 132 Query: 128 ASLPRGGKVTISVQ 141 +L RGG++ I + Sbjct: 133 DALVRGGQLDIGAE 146 >gi|294011925|ref|YP_003545385.1| hypothetical protein SJA_C1-19390 [Sphingobium japonicum UT26S] gi|292675255|dbj|BAI96773.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 217 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFM 67 S+D +LLCSR+CHD++SP+GA++N LEL+ DE E + L+ S+ ++ +LKF Sbjct: 7 SIDFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSARTSANKLKFF 66 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G + + IE A RV++ W E L + K+LLNL ++A Sbjct: 67 RLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLEKLPVKVLLNLALIAG 126 Query: 128 ASLPRGGKVTISVQ 141 +L RGG++ I + Sbjct: 127 DALVRGGQLDIGAE 140 >gi|85373065|ref|YP_457127.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594] gi|84786148|gb|ABC62330.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594] Length = 214 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 5/209 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM 67 ++ L + LCSR+CHD++SP+GA+ N LELL E + ++L+ S+ ++ +LKF Sbjct: 6 AVTLASQLCSRLCHDLLSPVGALSNGLELLAEEEDPEMRQRCLELLEASARTSANKLKFF 65 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G +G+ + + VI+ KRV+V+W L + K++LN + Sbjct: 66 RLAFGAAGGFGDRVGVDEPKAVIDALAQDAKRVEVNWALAVDALPKPAVKVMLNFAQMGL 125 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186 +L RGG + I + + ++ G F + + ++G++ E + + + Sbjct: 126 DALVRGGTLDIGAERRDGASEIVVRATGAKVAFDDSIGRALEGSLPEDGLSGRTAAAHML 185 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L+A ++ L + +D +VL A+L + Sbjct: 186 ALIAEQSGGNLQYQKSEDA-LVLGAMLPE 213 >gi|307293089|ref|ZP_07572935.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum L-1] gi|306881155|gb|EFN12371.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum L-1] Length = 217 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 3/134 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFM 67 S++ +LLCSR+CHD++SP+GA++N LEL+ DE E + L+ S+ ++ +LKF Sbjct: 7 SIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSAKTSANKLKFF 66 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G + + IE A RV++ W E L + K+LLNL ++A Sbjct: 67 RLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLDKLPVKVLLNLALIAG 126 Query: 128 ASLPRGGKVTISVQ 141 +L RGG++ I + Sbjct: 127 DALVRGGQLDIGAE 140 >gi|148552992|ref|YP_001260574.1| hypothetical protein Swit_0063 [Sphingomonas wittichii RW1] gi|148498182|gb|ABQ66436.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 208 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFM 67 S D +LLCSR+CHD++SP+GA++N +ELL DE E + M+L+ S+ + RLKF Sbjct: 5 SADFASLLCSRLCHDLLSPVGALNNGIELLADETDPEMRERCMELLAESAQTTANRLKFY 64 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G + + + IE + +V++ W + L + K LLNL ++A Sbjct: 65 RLAFGAAGGFGERVDTREAREAIEGLHG-NGKVRLGWMVDAPTLPKPAIKTLLNLALIAG 123 Query: 128 ASLPRGGKVTISVQDSK 144 +L RGG++ I+ + + Sbjct: 124 DALVRGGQLDIAAEGGE 140 >gi|197103762|ref|YP_002129139.1| hypothetical protein PHZ_c0296 [Phenylobacterium zucineum HLK1] gi|196477182|gb|ACG76710.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 219 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKFMRL 69 +L A L +R+CHD ISP AI + L+LL++ +D E M LI S+ L F R+ Sbjct: 16 ELAAFLAARMCHDFISPASAIVSGLDLLEDPSAQDMREEAMGLIESSARKLADLLAFCRV 75 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG + S ++ D+E++ A R ++ WT E +++ A+ LLNL +A A+ Sbjct: 76 AFGASASAETFDPR-DLEKLARGVFA-HMRAELDWTLETPAVNKPTARTLLNLAQMAGAA 133 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVIL 188 LP GG + + +++ G AR PE + + + H +Q YYV L Sbjct: 134 LPTGGTARVRAVQEGAQVALAVEATGPRARLRPEVLRGLQGEPLGEGLHGHWVQAYYVHL 193 Query: 189 LAHENKIRLLPEIIDDHNVVLSALL 213 + R+ + +++ +V +A L Sbjct: 194 FVADAGGRVFAD-VNEERIVFAATL 217 >gi|312113704|ref|YP_004011300.1| hypothetical protein Rvan_0925 [Rhodomicrobium vannielii ATCC 17100] gi|311218833|gb|ADP70201.1| Protein of unknown function DUF2328 [Rhodomicrobium vannielii ATCC 17100] Length = 217 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 108/198 (54%), Gaps = 9/198 (4%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64 L L AL+ S+ICHD+ IGAI+N LELL+E ED ++LI+ S+ +A +L Sbjct: 5 RLDDTALAALISSKICHDLAGQIGAINNGLELLEEENDEDTRFYALELIQNSAKAAWAQL 64 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 F RLAFG + S+ +L+ + IEQV ++ KR ++ W ++ +E A++L+ L Sbjct: 65 DFNRLAFGVSSSLGALVPVQHIEQVARRYLENGKR-RLHWQANVPEIEKEHARLLMALLG 123 Query: 125 VAHASLPRGGKVTISVQDSK---NENIFSLKI--NGNLARFPEKFTQIVDGNVESTIDSH 179 V+ +LP GG + + SK + F L I G AR PE ++ G++ TID Sbjct: 124 VSINALPAGGDYYLGLSASKTRAGRSRFKLIILCRGRAARVPEGVAEVFAGDMTRTIDGR 183 Query: 180 DIQFYYVILLAHENKIRL 197 + YY LA E ++L Sbjct: 184 LVIAYYATRLATEASLKL 201 >gi|46200921|ref|ZP_00056203.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 205 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 7/143 (4%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 L LLC+R+CHD+ SP+GA +ELL++ G + E + L+ S +A RLKF+R A G Sbjct: 9 LSELLCARLCHDLASPLGAASAGMELLED-GDDPETLALVSASMAAATARLKFLRAALGP 67 Query: 74 TGSVD-SLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 + + LGD+ I ++ AV + + W+ ++ ++ E A++LLNL ++A +L Sbjct: 68 ANDMPHTPKSLGDL---IRAYLNGAVTGGITLDWSSDRPEMDGETARLLLNLVLIARDAL 124 Query: 131 PRGGKVTISVQDSKNENIFSLKI 153 PRGG+++ + S+ L++ Sbjct: 125 PRGGRISARCESSQGGGDAGLRV 147 >gi|56551648|ref|YP_162487.1| hypothetical protein ZMO0752 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761225|ref|ZP_04759313.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752764|ref|YP_003225657.1| hypothetical protein Za10_0524 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543222|gb|AAV89376.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374132|gb|EER63629.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552127|gb|ACV75073.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 208 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 82/141 (58%), Gaps = 3/141 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---R 63 +++++L +LLCSR+CHD++SP+ A++N +ELL + + + I L S SA + + Sbjct: 1 MTMTAINLASLLCSRLCHDLLSPVSAMNNGIELLADEHDPEMRARCIDLLSESAKVSASK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G + +I + I D R+Q+ W + + ++ +ILLNL Sbjct: 61 LKFFRLAFGQGGGFSESVDTEEIREAIAGLFGFDHRIQLGWMVDDPVMEKQAVRILLNLS 120 Query: 124 MVAHASLPRGGKVTISVQDSK 144 ++A +L RGG + I + ++ Sbjct: 121 LIASDALVRGGNLDIGAEGNE 141 >gi|326386902|ref|ZP_08208516.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM 19370] gi|326208582|gb|EGD59385.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM 19370] Length = 217 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 80/138 (57%), Gaps = 3/138 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 ++S++L +LL SR+CHD++SP+GA+ N LELL E + +L+ S+ ++ + Sbjct: 1 MTIASLELASLLASRLCHDMLSPVGAMSNGLELLTEEKDPEMRQRCFELLEQSAKASADK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G + L + V++ + + R+ ++W+ + + K+LLNL Sbjct: 61 LRFFRLAFGAAGGFGDTVPLSEPRAVVDALVGGNGRISLNWSLSGDAMPKSAVKVLLNLA 120 Query: 124 MVAHASLPRGGKVTISVQ 141 ++ +L RGG + I+ + Sbjct: 121 LIGIEALVRGGTLEIAAE 138 >gi|163746346|ref|ZP_02153704.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45] gi|161380231|gb|EDQ04642.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 16/187 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFM 67 ++DL AL+ SRICHD+ISPIGAI+N LELL+ G ++LI S SA R++F Sbjct: 5 NLDLPALIGSRICHDLISPIGAINNGLELLNMAGTGAAPGPELELIGQSVESASARIRFF 64 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMV 125 R+AFG +G D +G G++ ++ D D R+++ W T + SR+ ++ M Sbjct: 65 RIAFGASG--DQAMGQGEVTSILRDLY-TDTRIEIDWQITAPQ---SRDCVRMAFLSLMC 118 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQIVDGNVESTIDSHDIQFY 184 +L GG +TI+ Q K + L+ + +A PE + + + + + +QF Sbjct: 119 METALHHGGLITIAEQAGK----WRLQAEADKIAVEPELWALLSKVDQDLQLQPAQVQFA 174 Query: 185 YVILLAH 191 + +LA Sbjct: 175 LLPILAR 181 >gi|146279809|ref|YP_001169967.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC 17025] gi|145558050|gb|ABP72662.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC 17025] Length = 198 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 4/133 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL ALL SRICHD+ISPIGAI N +ELL G I M LI S +A R++F R+AF Sbjct: 6 DLAALLGSRICHDLISPIGAIGNGVELLMMDGSIRGPEMTLISESVANANARIRFFRVAF 65 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G TG+ + IG +I +++D + R+Q+ W G DL R K+ L + ++ Sbjct: 66 GATGA-EQRIGRPEILSILQD-LTRGGRLQIDWQG-PTDLQRREVKLAFLLILCLETAMA 122 Query: 132 RGGKVTISVQDSK 144 GG++ + D++ Sbjct: 123 YGGRIRVERNDAR 135 >gi|254512237|ref|ZP_05124304.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221535948|gb|EEE38936.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 204 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 5/143 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59 M + + S ++L L+ SRICHD+ISPIGAI N LELL+ VG ++ M+LI S S Sbjct: 1 MQQEVRMGASDVNLAELIGSRICHDLISPIGAITNGLELLEMVGAVKGPEMELISGSVGS 60 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 A R++F R+AFG + D +G ++ ++++D + RV++ WT + + R + K+ Sbjct: 61 AGARIRFFRVAFG--AASDQPLGRAEVVELLKD-VERAGRVRIVWTLTE-PVPRNQVKLA 116 Query: 120 LNLFMVAHASLPRGGKVTISVQD 142 M +++P GG+V I+V+ Sbjct: 117 FLALMCCESAMPFGGEVEITVRS 139 >gi|260426410|ref|ZP_05780389.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260420902|gb|EEX14153.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 201 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 12/196 (6%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLK 65 ++++ + L+ SR+CHD++SPIGAI N LEL+ G E M LI S+ A R+ Sbjct: 1 MSVATARIATLVGSRLCHDLVSPIGAISNGLELIALAGTPGPEEMALIEQSAALATARIN 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG+ S +G + ++++D+ R+ + W + D +R ++ + Sbjct: 61 FFRVAFGHA-STQQDVGAREARKLLQDYCK-GSRLSIDWLPDG-DAARTEVQLAFLATLC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQ 182 ++LP GG+V I+ + +I+G R P+ + Q+ +E+ + +Q Sbjct: 118 CESALPLGGRVHITHIEGGG-----WRISGTGQRLSIEPDLWAQLTSTTLEAEVTPARVQ 172 Query: 183 FYYVILLAHENKIRLL 198 F + LLA E +++ Sbjct: 173 FALLALLAPERGRKMV 188 >gi|260433681|ref|ZP_05787652.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417509|gb|EEX10768.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMR 68 ++++L L+ SRICHD+ISPIGAI N LELL+ V G + M+LI S SA R++F R Sbjct: 4 TNVNLAELIGSRICHDLISPIGAITNGLELLEMVGGTQGPEMELITGSVGSAGARIRFFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG + D +G ++ ++ D + RV+V W + + R + K+ M + Sbjct: 64 VAFGA--ASDQPLGRSEVTDLLRD-VERAGRVRVHWNVTEA-MPRNQIKLAFLALMCCES 119 Query: 129 SLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 ++P GG+V I SV D + ++N + P+ + + G + + +QF + Sbjct: 120 AMPMGGEVKIDSVGDKWTVTGTADRMNVD----PDLWKGLPTGTFANKVTPAQVQFALLP 175 Query: 188 LLAHENKIRLLPE 200 A R+L E Sbjct: 176 QTAAAQGRRVLAE 188 >gi|77465006|ref|YP_354509.1| hypothetical protein RSP_3825 [Rhodobacter sphaeroides 2.4.1] gi|77389424|gb|ABA80608.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 198 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL ALL SRICHD+ISPIGAI N +ELL G I M LI S A R++F R+AF Sbjct: 6 DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 65 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G T ++D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 66 GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 122 Query: 132 RGGKVTISVQDSK 144 GG++ + D++ Sbjct: 123 YGGRIRVERSDAR 135 >gi|126464268|ref|YP_001045381.1| hypothetical protein Rsph17029_3517 [Rhodobacter sphaeroides ATCC 17029] gi|126106079|gb|ABN78609.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029] Length = 198 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL ALL SRICHD+ISPIGAI N +ELL G I M LI S A R++F R+AF Sbjct: 6 DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 65 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G T ++D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 66 GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 122 Query: 132 RGGKVTISVQDSK 144 GG++ + D++ Sbjct: 123 YGGRIRVERSDAR 135 >gi|221368988|ref|YP_002520084.1| hypothetical protein RSKD131_3151 [Rhodobacter sphaeroides KD131] gi|221162040|gb|ACM03011.1| Hypothetical Protein RSKD131_3151 [Rhodobacter sphaeroides KD131] Length = 276 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL ALL SRICHD+ISPIGAI N +ELL G I M LI S A R++F R+AF Sbjct: 84 DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 143 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G T ++D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 144 GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 200 Query: 132 RGGKVTISVQDSK 144 GG++ + D++ Sbjct: 201 YGGRIRVERNDAR 213 >gi|332560608|ref|ZP_08414926.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N] gi|332274406|gb|EGJ19722.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N] Length = 198 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL ALL SRICHD+ISPIGAI N +ELL G I M LI S A R++F R+AF Sbjct: 6 DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 65 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G T ++D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 66 GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 122 Query: 132 RGGKVTISVQDSK 144 GG++ + D++ Sbjct: 123 YGGRIRVERSDAR 135 >gi|163731846|ref|ZP_02139293.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149] gi|161395300|gb|EDQ19622.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149] Length = 198 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 5/136 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 S+++L AL+ SRICHD+ISPIGAI+N LELLD G M LI+ S +A R+++ R Sbjct: 4 SNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIRYFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG G + ++G +I +I+D + R+ V+W G R ++ + Sbjct: 64 VAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRLAFLALLCVET 119 Query: 129 SLPRGGKVTISVQDSK 144 ++P GG++ IS D + Sbjct: 120 AMPYGGRIEISQDDGQ 135 >gi|260574020|ref|ZP_05842025.1| conserved hypothetical protein [Rhodobacter sp. SW2] gi|259023486|gb|EEW26777.1| conserved hypothetical protein [Rhodobacter sp. SW2] Length = 197 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 14/191 (7%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFM 67 +++ DL+ALL SRICHD+ISPIGAI N +ELL G + + LI S +A R++F Sbjct: 1 MANPDLIALLGSRICHDLISPIGAIGNGVELLMMDGSLRGPEIALISESVANANARIRFF 60 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG +G D IG ++ ++ D I R+ + W DL R K++ L Sbjct: 61 RVAFGASGR-DQRIGRPEVMAILTD-ITRGGRLSIDWQSAG-DLPRAEVKLVFLLIQCLE 117 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFY 184 ++ GG++T+ + ++ G+ A+ PE + + D + +++ + F Sbjct: 118 TAMAYGGRITV------EQTGDGWRLTGSAAKLKVSPELWDILTDPDATVEVNAAQVHFA 171 Query: 185 YVIL-LAHENK 194 V L LA + + Sbjct: 172 LVPLELAQQGR 182 >gi|110679883|ref|YP_682890.1| hypothetical protein RD1_2657 [Roseobacter denitrificans OCh 114] gi|109455999|gb|ABG32204.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 198 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 6/135 (4%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 S+++L AL+ SRICHD+ISPIGAI+N LELLD G M LI+ S +A R+++ R Sbjct: 4 SNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIRYFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG G + ++G +I +I+D + R+ V+W G R ++ + Sbjct: 64 VAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRMAFLALLCVET 119 Query: 129 SLPRGGKVTISVQDS 143 ++P GG++ IS QD Sbjct: 120 AMPYGGRIEIS-QDG 133 >gi|86138882|ref|ZP_01057454.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193] gi|85824529|gb|EAQ44732.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193] Length = 198 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 12/185 (6%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRL 69 + +L AL+ SRICHD+ISP+GAI+N LELL G + ++LI S ++A R++F R+ Sbjct: 5 TANLAALIGSRICHDLISPVGAINNGLELLAMSGAMAGPELELISDSVLNANARIRFFRI 64 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128 AFG G D +G +I V++D I R++ W E S R L L + Sbjct: 65 AFGAAG--DQQMGRAEIVSVLDD-IGKAGRLKYQWNLAEGCSRSEVRMAFLAALCL--ET 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFYYVI 187 +LP GG +++S D K +++ G VD + +T+ +QF + Sbjct: 120 ALPYGGLISVSCTDGK----WTVVGEGRKISIEAPLWGHVDTSDTSATLTPAQVQFAMLA 175 Query: 188 LLAHE 192 + A E Sbjct: 176 VAAQE 180 >gi|254464507|ref|ZP_05077918.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I] gi|206685415|gb|EDZ45897.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I] Length = 198 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 28/209 (13%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71 +L AL+ SRICHD+ISP+GAI+N LELL G + ++LI S +A R++F R+AF Sbjct: 7 NLAALVGSRICHDLISPVGAINNGLELLGMAGSMSGPELELISDSVANANARIRFFRVAF 66 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G G D + +I ++ED I+ R++ W+ + +R A++ L + +LP Sbjct: 67 GAAG--DQQMARAEIVSLLED-ISKGGRIKYQWSPLE-GCTRSEARLSLLAALCLETALP 122 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVIL 188 GG V + D K + G ++ E + ++ G + I +QF Sbjct: 123 YGGTVKVFCADGK------WTVMGEGSKLNVDDELWARVSGGTSNAEITPALVQFA---- 172 Query: 189 LAHENKIRLLPEIIDDHN--VVLSALLEK 215 LLPE + N V L LEK Sbjct: 173 --------LLPEAAKEANRTVRLEQNLEK 193 >gi|114766184|ref|ZP_01445184.1| hypothetical protein 1100011001298_R2601_22457 [Pelagibaca bermudensis HTCC2601] gi|114541555|gb|EAU44598.1| hypothetical protein R2601_22457 [Roseovarius sp. HTCC2601] Length = 200 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRL 69 S + L+ SRICHD++SP+GAI N LEL+ G E M LI S SA R+ R+ Sbjct: 5 SARIAGLVGSRICHDLVSPVGAISNGLELIALAGQPGPEEMALISQSCSSATARINLFRM 64 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG S D IG + +++ + A R+ + W D R+ ++ + + ++ Sbjct: 65 AFGAA-SADQQIGGAEARKLLAGYCA-GGRLSIDWL-PSGDAERQDMQLAMLAALCCESA 121 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYV 186 LP GGKV ++ E+ ++ G R + + G + + + F + Sbjct: 122 LPLGGKVAVA------EDGGGWRVTGTGPRLNIEAAAWAMLSGGALPDDLPPARVHFALL 175 Query: 187 ILLAHENKIRL 197 LA E +L Sbjct: 176 GALAPERGRKL 186 >gi|254477150|ref|ZP_05090536.1| conserved hypothetical protein [Ruegeria sp. R11] gi|214031393|gb|EEB72228.1| conserved hypothetical protein [Ruegeria sp. R11] Length = 198 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 ++ + +L AL+ SRICHD+ISPIGAI+N LELL G + ++LI S +A R++ Sbjct: 1 MSVDNANLAALVGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG + + I ++ V+ED I+ R++ WT ++ +R ++ L + Sbjct: 61 FFRIAFG--AASEQQISRAEVVSVLED-ISKGGRLKYQWTPQE-PATRAEVRLALLAGLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 LP GG V I D K I K+N + E + ++ G+ +T+ +QF Sbjct: 117 LETGLPYGGNVNILCADGKWTVIGEGSKLNID----DELWARVSGGSSSATVTPALVQF 171 >gi|163736427|ref|ZP_02143846.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis BS107] gi|161390297|gb|EDQ14647.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis BS107] Length = 198 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 14/181 (7%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 ++ + +L AL+ SRICHD+ISPIGAI+N LELL G + ++LI S +A R++ Sbjct: 1 MSVDNANLAALIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG + D I ++ V+ED I R++ W ++ SR ++ + Sbjct: 61 FFRIAFG--AASDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIF---SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 LP GG V I D K I L I+ +L + ++ G +T+ +Q Sbjct: 117 LETGLPYGGTVKILCADGKWTVIGEGSKLNIDDDL------WARVSGGTSSTTVTPALVQ 170 Query: 183 F 183 F Sbjct: 171 F 171 >gi|56696855|ref|YP_167218.1| hypothetical protein SPO1983 [Ruegeria pomeroyi DSS-3] gi|56678592|gb|AAV95258.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 198 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 8/200 (4%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMR 68 S ++L +L+ SRICHD+ISPIGAI N LELLD G +E M+LI S +A R++F R Sbjct: 4 SGVNLASLIGSRICHDLISPIGAITNGLELLDMTGSVEGPEMELIADSVGNAGARIRFFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +A+G S D ++G ++ +++D + R + W + ++R ++ Sbjct: 64 IAYG--ASSDQMLGRAELVGLLDD-LNRSARAKADWAPTE-PVTRAEVRMAFLALQCCET 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 +LP GG V + D + + L+ P + + + + +QF + Sbjct: 120 ALPFGGSVRM---DQQGDRWIVTAEAEKLSVDPALWEGLSNPAALKQVTPAQVQFALLPA 176 Query: 189 LAHENKIRLLPEIIDDHNVV 208 +A + R+ E D V+ Sbjct: 177 VAEDAGRRVTVETSDRQLVI 196 >gi|302382297|ref|YP_003818120.1| hypothetical protein Bresu_1185 [Brevundimonas subvibrioides ATCC 15264] gi|302192925|gb|ADL00497.1| Protein of unknown function DUF2328 [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 6/180 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRL 69 +L +L+ +++CHD ISP GAI + L+LL++ + D+ + LI S+ + ++F R+ Sbjct: 19 ELASLIAAKLCHDFISPSGAIVSGLDLLNDPTAQDMRDDAISLITDSAKKMVALVQFCRV 78 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG + + G+ + + D + R + W E D S+ +A+ ++NL + A+ Sbjct: 79 AFGAATTAERFT--GEELRALVDGVTHGGRATLDWRLEVADFSKPQARAMVNLAYLTVAA 136 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVIL 188 LP GG+ ++ + + G AR PE T + + + +Q Y++ L Sbjct: 137 LPMGGQAVVTARTQGAGIVLEGLAEGARARLKPEAATGLAGQRLTEGLAGQWVQPYWLWL 196 >gi|84516141|ref|ZP_01003501.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53] gi|84509837|gb|EAQ06294.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53] Length = 196 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 13/200 (6%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL L+ SRICHD+ISPIGAI N LELL G M LI S +A R++F R+A+ Sbjct: 4 DLATLVGSRICHDLISPIGAIGNGLELLALTDGNPGAEMNLIADSVQNANARIRFYRIAY 63 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G S + ++G D+ I +A R W + D R + L L A++P Sbjct: 64 G-AASTEQMLGSADVLSFIS-VLARGGRFTYFWQVAE-DRPRREVRCALLLLQCFEAAMP 120 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVIL 188 GG + +SV D + ++ RF P + ++ G+ T + +QF + Sbjct: 121 VGGDIHVSVIDGR------WVLSAECLRFNIDPCLWDRLATGDTAFTYSAAQVQFALLPC 174 Query: 189 LAHENKIRLLPEIIDDHNVV 208 + E L ++ D VV Sbjct: 175 MLQEAGRALKVKMSSDRIVV 194 >gi|329891303|ref|ZP_08269646.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568] gi|328846604|gb|EGF96168.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568] Length = 252 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 6/189 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRL 69 +L A + +++CHD ISP GA+ + L+LLD+ + D+ + LIR S+ + + F R+ Sbjct: 36 ELAAFIAAKLCHDFISPAGAVMSGLDLLDDPTAQDMRDDALGLIRQSAAKMVALVHFARV 95 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG S + G ++ ++ + R + W + ++ +A+ L+NL + ++ Sbjct: 96 AFGAATSSEQFSG-AELHGLVAG-LTDGGRATLDWRVGEETFTKIQARALINLAYLTVSA 153 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVIL 188 LP GG ++V+ ++ G AR PE + + + IQ Y++ L Sbjct: 154 LPMGGAAVVTVRREGDQLFLVGSAEGARARLKPEAVVGLKGERLTEGLAGQWIQPYWLWL 213 Query: 189 LAHENKIRL 197 A E RL Sbjct: 214 TAREAGGRL 222 >gi|126729826|ref|ZP_01745639.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37] gi|126709945|gb|EBA08998.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37] Length = 201 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 16/200 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMR 68 S L AL+ SR+CHD+ISPIGAI N LEL+ G + M LI+ S SA R++F R Sbjct: 5 SATLAALVGSRLCHDLISPIGAIQNGLELIALSGADQSSPEMALIQESCDSAAARIRFFR 64 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILLNLFMVAH 127 +AFG G ++ ++ ++ + R++ W GE D SR ++ F Sbjct: 65 VAFGAPGETQ-MMSRREVSAILSG-VTKGGRLKAEWVAGE--DQSRPEVQLCFLAFQCCE 120 Query: 128 ASLPRGGKVTISVQDSKNENIFS--LKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFY 184 ++LP GG V I D+ + + +ING+ + ++G T + + F Sbjct: 121 SALPMGGTVRIE-NDAAGWTVRASGTRINGD-----RVYWDHINGAAPLETPPADKVHFA 174 Query: 185 YVILLAHENKIRLLPEIIDD 204 + +LA +LL + D Sbjct: 175 LLPILAAARGRQLLATLTGD 194 >gi|255261517|ref|ZP_05340859.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255103852|gb|EET46526.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 204 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMRL 69 S L AL+ SRICHD+ISP+GAI N +ELL+ + D +QLI S +A R+ F R+ Sbjct: 9 SAQLSALVGSRICHDLISPLGAISNGIELLEMSNLADTPEVQLIAESIANANARILFFRV 68 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG + I +I Q + IA RVQ W D SR +IL L + ++ Sbjct: 69 AFGSSTETQR-INQSEINQTL-GAIAAGARVQYRWQAAG-DHSRPDVRILFLLILCIESA 125 Query: 130 LPRGGKVTISVQDSK 144 + GG++T+ D+K Sbjct: 126 MAFGGEITVQSVDAK 140 >gi|310815613|ref|YP_003963577.1| hypothetical protein EIO_1132 [Ketogulonicigenium vulgare Y25] gi|308754348|gb|ADO42277.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25] Length = 194 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 19/180 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 DL AL+ SRI HD+ +P+GAI N +ELL V E ++LI S SA RL+ +RLAFG Sbjct: 4 DLTALVTSRISHDLFNPLGAISNGVELLGLVAPSPE-LELIGDSVKSATARLQMLRLAFG 62 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILLNLFMVAH 127 GS G + D+ A V G+ + R AK+L L + Sbjct: 63 AAGS-------GAV--TARDWAATLAGVSAGGRGKYKHNSPTPVPRNEAKVLALLGLCCD 113 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYV 186 ASLP GG++ S + +S++ +G RF V G ++ +QF V Sbjct: 114 ASLPYGGEIVFSPHGNGG---WSVQASGREVRFNAHLWGCVTGLAPREPVEPSHVQFLLV 170 >gi|288962381|ref|YP_003452676.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510] gi|288914647|dbj|BAI76132.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510] Length = 226 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 19/155 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLSSMSAIIRLKF 66 LL S++CHD++SP+GAI N LEL++E+ G E ++LI SS A RL+ Sbjct: 18 LLASKLCHDLVSPVGAIRNGLELIEEMQEDEDGGAIGGFLGEAVKLIDHSSGQADRRLRV 77 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--DLSRER---AKILLN 121 RLA+G G G GD ++ R ++ W E++ D++ +R K+LLN Sbjct: 78 FRLAYGQAGRDQK--GFGDARAAAAGYVE-GGRTRLDWP-ERVPHDMTAQRRGVVKLLLN 133 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 L M+A +L GG V+++ + ++ G Sbjct: 134 LVMLADEALTHGGVVSVAADGDETAGGVTVTAAGR 168 >gi|329849905|ref|ZP_08264751.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19] gi|328841816|gb|EGF91386.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19] Length = 254 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 6/167 (3%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRL 64 + +S DL + +++CHD ISP GAI + L+LLD+ +D E + LI S+ + + Sbjct: 44 DFTSHDLATQMVAKLCHDFISPAGAIMSGLDLLDDPSAQDMRQEALNLIAASAKKMVTLV 103 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 F R+AFG + S ++ G G + +++ D F + ++ + G I + A+ LLNL Sbjct: 104 HFARVAFGASNSAEAFSG-GQLNKILGDVFSTMRAQLDFAIDGNLI-FPKAAARALLNLG 161 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++A SLP GG + + S + + G AR + T+ + G Sbjct: 162 LIAGNSLPTGGTARLEARFSDDGIRLIAESRGPRARLKAEATEGLKG 208 >gi|254461651|ref|ZP_05075067.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206678240|gb|EDZ42727.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLA 70 + AL+ +RICHD+ISPIGAI+N +ELL G + ++LI S +A R++F R+A Sbjct: 6 LQFSALVGARICHDLISPIGAINNGMELLSMSGAPQSPEIELIAQSVDAANARIRFFRIA 65 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 +G T S + +G +I ++ DF R+ ++W + D++R +++ A +L Sbjct: 66 YGAT-STEQFLGRSEITSILRDFTK-GSRLVLNWHPLE-DVTRSEVQLVFLAIQCAEQAL 122 Query: 131 PRGGKVTI 138 P GG V I Sbjct: 123 PYGGHVEI 130 >gi|99081047|ref|YP_613201.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040] gi|99037327|gb|ABF63939.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040] Length = 198 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 7/128 (5%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 +L AL+ SRICHD+ISP+GAI+N LELL +E ++LI S +A R++F R+AF Sbjct: 7 NLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAF 66 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFMVAHASL 130 G G + +G +I V+ D ++ R++ +W+ + R+ R L L + ++L Sbjct: 67 GAAGEQE--LGRMEIMSVLSD-VSKGGRIKYNWSSQDSAARRDVRMAFLAGLCL--ESAL 121 Query: 131 PRGGKVTI 138 P GG V I Sbjct: 122 PYGGTVQI 129 >gi|259418910|ref|ZP_05742827.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259345132|gb|EEW56986.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 198 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 7/128 (5%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 +L AL+ SRICHD+ISP+GAI+N LELL +E ++LI S +A R++F R+AF Sbjct: 7 NLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAF 66 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFMVAHASL 130 G G + +G +I V+ D ++ R++ +W+ ++ R+ R L L + ++L Sbjct: 67 GSAGEQE--LGRMEIMSVLGD-VSKGGRIKYNWSSQEAAARRDVRMAFLAGLCL--ESAL 121 Query: 131 PRGGKVTI 138 P GG + I Sbjct: 122 PYGGTIQI 129 >gi|163741038|ref|ZP_02148430.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10] gi|161385391|gb|EDQ09768.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10] Length = 188 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ SRICHD+ISPIGAI+N LELL G + ++LI S +A R++F R+AFG Sbjct: 1 MIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIRFFRIAFG--A 58 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + D I ++ V+ED I R++ W ++ SR ++ + LP GG Sbjct: 59 ASDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALCLETGLPYGGT 116 Query: 136 VTISVQDSKNENIF---SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 V I D K I L I+ +L + ++ G +T+ +QF Sbjct: 117 VKILCADGKWTVIGEGSKLNIDDDL------WARVSGGTSSATVTPALVQF 161 >gi|114797307|ref|YP_759367.1| hypothetical protein HNE_0638 [Hyphomonas neptunium ATCC 15444] gi|114737481|gb|ABI75606.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 215 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSMSAIIRL 64 NL A + +R+CHDI+SP + SLE+LD G +E Q +R + L Sbjct: 2 NLDHARFAAFISARLCHDIVSPAATMSLSLEMLDSPGSAEEKEQSERTLREGAHGVTATL 61 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F+R AFG G + +++ +D++ K + W L+ A++++NL M Sbjct: 62 QFLRYAFGSMGLQPGTADVHQFKKLTDDYLRFQK-PSIDWDLSTPVLTFAEARLIMNLVM 120 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 V + RGG + ++V++ +L G+ + E + + G Sbjct: 121 VCLTATVRGGIIHVNVREDNGAKTLTLTCKGDRLKLKEDVVKALKG 166 >gi|254488919|ref|ZP_05102124.1| conserved hypothetical protein [Roseobacter sp. GAI101] gi|214045788|gb|EEB86426.1| conserved hypothetical protein [Roseobacter sp. GAI101] Length = 198 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 9/138 (6%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMR 68 S ++ L+ SRICHD+ISPIGAI+N LEL+ G M+LI S SA R++F R Sbjct: 4 SDLEFATLIGSRICHDLISPIGAINNGLELVSMSGGGSGPEMELIGDSVGSASARIRFFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL--FMVA 126 +AFG G D +G ++ ++ D + R V+W I ++ R+ + L + Sbjct: 64 IAFGAAG--DQSLGSAEVTSILRDLYR-ESRSSVAW---NIPDAQPRSDVRLAFLALLCL 117 Query: 127 HASLPRGGKVTISVQDSK 144 +P GG V + +K Sbjct: 118 ETGMPYGGAVVVERDGAK 135 >gi|295691366|ref|YP_003595059.1| hypothetical protein Cseg_4029 [Caulobacter segnis ATCC 21756] gi|295433269|gb|ADG12441.1| Protein of unknown function DUF2328 [Caulobacter segnis ATCC 21756] Length = 229 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 6/207 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRL 64 ++ D A+L +R+CHD ISP AI + L+LL++ +D + M LI S+ L Sbjct: 21 DVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPAAQDMREDAMSLIASSARKLADLL 80 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F R+AFG + S ++ ++E++ + A R ++W E +++ A+ +LN+ Sbjct: 81 QFTRVAFGASASAENFDSR-ELEKLAQGVFA-HVRPTLNWAIEPQAMNKPSARAVLNIAQ 138 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQF 183 +A ++LP GG T+ ++ + G AR PE + + + +Q Sbjct: 139 IAASALPAGGVATVKGVNADGRFSIIAEAIGPRARLRPEVLAGLKGEPLAEGLGGPWVQA 198 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLS 210 Y+ L ++ E+ +D V + Sbjct: 199 AYLNALVRAAGGQIAAEVGEDRASVAA 225 >gi|126726414|ref|ZP_01742255.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium HTCC2150] gi|126704277|gb|EBA03369.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium HTCC2150] Length = 200 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 21/196 (10%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L AL+ SRICHD+I+P+GAI N LELL G + + LI S +A R+KF+R AFG Sbjct: 8 LCALVSSRICHDVINPLGAIGNGLELLSLGGDLSGPEIDLIDASHKNAEARVKFLRHAFG 67 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 TG + + I D+E+ +++ A + R++++ + L R K M + Sbjct: 68 ETG-IGATINGQDVEKTAQNYCATSNIKARLKLANS-----LPRPEVKRTYLAIMCMMQT 121 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVES-TIDSHDIQFYY 185 L GG + +S +S KI GN R + +T ++ + + I++ +IQF Sbjct: 122 LSFGGDIHVSQSNS------GWKIVGNAERRRNIKDLWTALLINDFSTLEIEASNIQFVL 175 Query: 186 VIL-LAHENKIRLLPE 200 + L L+ +KI +L E Sbjct: 176 LSLELSKAHKIPMLQE 191 >gi|83953645|ref|ZP_00962366.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1] gi|83841590|gb|EAP80759.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1] Length = 200 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAF 71 DL AL+ SRICHD+ISP+GAI+N LELL G+ + LI S +A RL+F R+AF Sbjct: 7 DLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFRVAF 66 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G G + + ++ D A K QVSW + + R +++ + +P Sbjct: 67 G-AGDAQP-VPAQETSGILRDLYAQSK-WQVSWP-DGVAAPRNALRMVFLSLLCLETGMP 122 Query: 132 RGGKVTISVQDS 143 GG++TI +D+ Sbjct: 123 YGGQITIDHRDA 134 >gi|119387209|ref|YP_918264.1| hypothetical protein Pden_4504 [Paracoccus denitrificans PD1222] gi|119377804|gb|ABL72568.1| conserved hypothetical protein [Paracoccus denitrificans PD1222] Length = 218 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 8/130 (6%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMR 68 L AL+ SR+CHDI+SP+GAI N LELL G + MQLI S +A R+++ R Sbjct: 21 LAALVGSRLCHDIVSPLGAIGNGLELLQLSGAWPGIDASPEMQLIAESVEAARARVRWFR 80 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG+ + D + + ++ + D + R+++ E DL R A+++L M Sbjct: 81 VAFGHA-APDQRLSMAELAALFAD-VEKGGRIRLRLEAEG-DLPRPEARMILLALMCLET 137 Query: 129 SLPRGGKVTI 138 ++P GG V + Sbjct: 138 AMPWGGSVLV 147 >gi|103487226|ref|YP_616787.1| hypothetical protein Sala_1741 [Sphingopyxis alaskensis RB2256] gi|98977303|gb|ABF53454.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 214 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFMR 68 +D ++L SR+CHD++SP+GA N LELL DE E ++L+ S+ ++ +LKF R Sbjct: 6 VDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANKLKFFR 65 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 LAFG G L+ + + IE I D+ + ++W L + KI+LNL ++ Sbjct: 66 LAFGSAGGFGELVPPEEAKSAIEGIIG-DRAITLNWMIGADPLPKPAVKIILNLALLLVD 124 Query: 129 SLPRGGKVTISVQDSKN 145 +L RGG++ + + + Sbjct: 125 ALVRGGRLDVGCEKQAD 141 >gi|167644070|ref|YP_001681733.1| hypothetical protein Caul_0097 [Caulobacter sp. K31] gi|167346500|gb|ABZ69235.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 230 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIR 63 +++ D AL+ +R+CHD ISP AI + L+LL++ +D + M LI S+ Sbjct: 21 LDVNGPDFAALVAARLCHDFISPASAIVSGLDLLEDPSAQDMREDAMSLISSSARKLADL 80 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG + S ++ ++E++ + A R + W +++ A+ +LN+ Sbjct: 81 LQFTRVAFGASASAENFDSR-ELEKLAQGVFA-HVRPTMDWAIPPSTMNKASARAILNIA 138 Query: 124 MVAHASLPRGGKVTI 138 +A ++LP GGK T+ Sbjct: 139 QIAASALPAGGKATL 153 >gi|84687193|ref|ZP_01015074.1| hypothetical protein 1099457000248_RB2654_04526 [Maritimibacter alkaliphilus HTCC2654] gi|84664781|gb|EAQ11264.1| hypothetical protein RB2654_04526 [Rhodobacterales bacterium HTCC2654] Length = 198 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 16/154 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMR 68 + DLVAL+ SRICHD++SP+GAI N +EL+ G E+ M L+ S ++A R++F R Sbjct: 8 PAPDLVALVGSRICHDLVSPLGAIGNGIELMTLTGGEETPEMALVNESLVNARGRIRFFR 67 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--DLSRERAKILLNLFMVA 126 +AFG S +++ GD+ + + ++ + V W +I D++R AK+ L Sbjct: 68 IAFGAANS-GAVVRAGDLAEAV---AGIETKAVVEW---RIPGDMARTDAKLALLALNCL 120 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +++P GG++++ + L + G RF Sbjct: 121 ASAMPYGGRISV------ERDAGGLVVTGRAERF 148 >gi|83942425|ref|ZP_00954886.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36] gi|83846518|gb|EAP84394.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36] Length = 200 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAF 71 DL AL+ SRICHD+ISP+GAI+N LELL G+ + LI S +A RL+F R+AF Sbjct: 7 DLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFRVAF 66 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G +G + + ++ D A K QVSW + + R +++ + +P Sbjct: 67 G-SGDAQP-VPAQETSGILRDLYAQSK-WQVSWP-DGVAAPRNALRMVFLSLLCLETGMP 122 Query: 132 RGGKVTISVQDS 143 GG++ I +D+ Sbjct: 123 YGGQINIDHRDA 134 >gi|254292520|ref|YP_003058543.1| hypothetical protein Hbal_0144 [Hirschia baltica ATCC 49814] gi|254041051|gb|ACT57846.1| conserved hypothetical protein [Hirschia baltica ATCC 49814] Length = 206 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 2/185 (1%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 + + L ALL S ICH+++SP+ + + L++ + + V LIR SS + +L F+R Sbjct: 1 MEASKLAALLASHICHELVSPVSSFKLVQDSLNDPDMREYVEDLIRSSSETLEYKLTFLR 60 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 A G G D L + + ++++ R + W + + ++++N+ M+A + Sbjct: 61 YALGSVGMQDGYADLHEARSLCQNYMK-GFRADLEWNDTPEITNFAQVRLVMNMMMIATS 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYVI 187 ++PRGG ++++ + ++ I ++ G E+ ++G E + +IQ Y+ Sbjct: 120 AMPRGGMISVTSEKVGDKVILKVEGKGPRVVLNEERRDSLNGVEPEGGWIAKNIQPYFAR 179 Query: 188 LLAHE 192 A E Sbjct: 180 ECARE 184 >gi|84501044|ref|ZP_00999279.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597] gi|84391111|gb|EAQ03529.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597] Length = 201 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 9/130 (6%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L AL+ SRICHD+ISP+GAI N +ELL + G E + LI S +A R++F+R+A Sbjct: 8 LAALIGSRICHDLISPVGAIQNGVELLAMERQAGPE---LALIEDSVNNASARIRFLRIA 64 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 FG G+ + +I + D I R++ W + RE ++ L + M +++ Sbjct: 65 FGLAGAGQPM-SPQEICGTLSD-IGRAGRIRHDWIPVETCTRRETQEVFLAM-MCLESAM 121 Query: 131 PRGGKVTISV 140 PRGG ++++ Sbjct: 122 PRGGTISVAT 131 >gi|126736805|ref|ZP_01752542.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2] gi|126713706|gb|EBA10580.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2] Length = 196 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 29/203 (14%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 DL AL+ SRICHD+ISPIGAI N +ELL + G E M+LI S +A R+++ R Sbjct: 4 DLAALVGSRICHDLISPIGAIGNGVELLALTDGDTGAE---MELINESVQNASARIRYFR 60 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA-- 126 +A+G S + ++ +I ++ A R+ W KID + R + L + Sbjct: 61 IAYG-AASEEQMVSRSEILSILAA-TARGGRINYIW---KIDGDQPRRLVRCALLTLQAI 115 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ASLP GG + I ++ E ++ ++ G + T +D + + + S + F+Y Sbjct: 116 EASLPLGGDIHI----TQEEEMWVMRGEG------PRLT--LDKELWNNLLSPQVGFHYT 163 Query: 187 ILLAHENKIRLLPEIIDDHNVVL 209 A + LLP ++ + VL Sbjct: 164 ---AAHVQFALLPGVLAEAGRVL 183 >gi|209965054|ref|YP_002297969.1| hypothetical protein RC1_1759 [Rhodospirillum centenum SW] gi|209958520|gb|ACI99156.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 212 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 10/95 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIRLKFMRLAFG 72 V LL SRICHD++SP+GAI+N +EL+DE+G+ E + LI S+ +A RL+ R AFG Sbjct: 13 VELLVSRICHDLVSPVGAINNGVELIDEMGLGAGAEALTLIADSAEAAARRLRLFRFAFG 72 Query: 73 YTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104 G D L D Q +E + RV++ W Sbjct: 73 AAGGQDGL----DPAQARLTLEGWF-RGGRVRIDW 102 >gi|85702935|ref|ZP_01034039.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217] gi|85671863|gb|EAQ26720.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217] Length = 199 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 12/134 (8%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRL 69 S L AL+ SRICHD++SP+GAI N LELL G+ + + LI S+ +A R++F RL Sbjct: 5 SQPLAALIASRICHDLVSPLGAISNGLELLHLSGVPQSPELTLITSSATNATARIRFFRL 64 Query: 70 AFGYTGSVDSLIG--LGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 AFG S+ L DI +E I +D R+ D+ A+ LL + Sbjct: 65 AFGQADKGQSIHAKDLCDILTAVHVEGRITLDLRL-------SDDIPHPMAQALLLTILC 117 Query: 126 AHASLPRGGKVTIS 139 ++P GG + +S Sbjct: 118 VEQAMPYGGLLHVS 131 >gi|315497651|ref|YP_004086455.1| hypothetical protein Astex_0617 [Asticcacaulis excentricus CB 48] gi|315415663|gb|ADU12304.1| Protein of unknown function DUF2328 [Asticcacaulis excentricus CB 48] Length = 234 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRL 69 +L L +++CHD ISP GAI + L+LL + + D+ + LI+ S+ + + F R+ Sbjct: 29 ELATQLVAKLCHDFISPTGAIISGLDLLSDPSAQDMRDDAVNLIQASATKLVTLVHFARV 88 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG S ++ ++ +++ D + + +++ + A+ L+NL +A + Sbjct: 89 AFGAATSAEAF-SAKELNKILSDVFSTMRATLDFDVADEVVFEKPAARALMNLGYIAGNA 147 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYV 186 LP GG T+ +++ + + NG AR PE + + + IQ +++ Sbjct: 148 LPTGGTATLRREETDEAITLTAQSNGPRARLKPEAVEGLNGQPLSDGLSGQWIQPFWL 205 >gi|16127700|ref|NP_422264.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15] gi|221236520|ref|YP_002518957.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000] gi|13425192|gb|AAK25432.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15] gi|148839268|tpg|DAA06031.1| TPA_exp: ChpT [Caulobacter vibrioides] gi|220965693|gb|ACL97049.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000] Length = 253 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRL 64 ++ D A+L +R+CHD ISP AI + L+LL++ + D+ M LI S+ L Sbjct: 45 DVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLL 104 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F R+AFG + S ++ ++E++ + A R + W E +++ ++ +LN+ Sbjct: 105 QFTRVAFGASASAENFDSR-ELEKLAQGVFA-HVRPTLDWQIEPQAMNKPSSRAVLNIAQ 162 Query: 125 VAHASLPRGGKVTI 138 +A ++LP GG T+ Sbjct: 163 IAASALPAGGVATV 176 >gi|159044019|ref|YP_001532813.1| hypothetical protein Dshi_1470 [Dinoroseobacter shibae DFL 12] gi|157911779|gb|ABV93212.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 204 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 5/125 (4%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL AL+ SRICHD+ISP+GAI N LELL G E M LI S SA R++F R+A+ Sbjct: 12 DLSALIGSRICHDLISPLGAIGNGLELLQMSGASESPEMTLIADSVTSANARIRFFRIAY 71 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G + +I ++ + R+Q+ W E D+ R AK ++P Sbjct: 72 G-DAVQNQMIKGAELRGALHGSYQ-GSRLQIDWQPE--DMLRSTAKRGFLALQCLETAMP 127 Query: 132 RGGKV 136 GG++ Sbjct: 128 YGGRI 132 >gi|89069452|ref|ZP_01156802.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516] gi|89044933|gb|EAR51020.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516] Length = 198 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L+ SRICHD+ISP+GAI N LELL + + + LI S +A RL+F R AFG Sbjct: 11 LVASRICHDVISPLGAIGNGLELLTLANPDLPEAELALIGESVAAAQARLQFFRFAFGS- 69 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 + D+ + ++ +V+ D +A + W + D R + + +L RG Sbjct: 70 -AADTPVAGREVVRVL-DAMAASGFARCRWEVAE-DPPRGLVRCAFLALLCVETALGRGA 126 Query: 135 KVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQF 183 + +SV+D + +S+ G + R PE + + G+ + + +QF Sbjct: 127 ALRVSVRDGR----WSVVGEGPVRHRDPEVWAALAGGD-PGALTAAQVQF 171 >gi|149915194|ref|ZP_01903722.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b] gi|149810915|gb|EDM70754.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b] Length = 199 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 4/129 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRL 69 S ++ AL SRICHD+ISPIGA+ N +EL+ G D M L+ S+ A R++F RL Sbjct: 5 SHNIAALTASRICHDLISPIGAVANGMELMQFAGASDGPEMALVSESAAHAKARIRFFRL 64 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 FG S ++ ++ +++ + I R+++ T ++ L R A+ +L + A Sbjct: 65 TFGIA-SDSQMVAAEEVNEIL-NAIYGGTRIEIETTLDR-SLPRAMAQAVLLAVLCAEHG 121 Query: 130 LPRGGKVTI 138 L GG++ + Sbjct: 122 LGVGGQLRV 130 >gi|83952102|ref|ZP_00960834.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM] gi|83837108|gb|EAP76405.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM] Length = 179 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Query: 26 IISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG 84 +ISP+GAI+N LELLD + LIR S+ A R++F RLAFG D + Sbjct: 1 MISPVGAINNGLELLDLAHSAQGAEFTLIRDSAAQATSRIRFFRLAFG-AAHKDQAVSAP 59 Query: 85 DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK 144 ++ ++ R V+W E+ L R RAK + LP GG++ ++ + Sbjct: 60 EMASLLRHCFPGPLR--VTWEVEET-LIRPRAKAACLAILCLDRCLPYGGEIRVAPHGAA 116 Query: 145 NENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 ++ R + + ++DG + + ++QF + A N + L + D Sbjct: 117 ----LAITTQSEGLRAHDPYWSLLDGRPIPEDLPPAEVQFALLPHTAQRNDLNLSAQHTD 172 Query: 204 DH 205 DH Sbjct: 173 DH 174 >gi|254418211|ref|ZP_05031935.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3] gi|196184388|gb|EDX79364.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3] Length = 236 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 13/208 (6%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKFM 67 ++L + +++CHD ISP GAI + L+L+ + +D + + LI S+ + + F Sbjct: 31 GIELATYVAAKLCHDFISPSGAIVSGLDLMRDPSAQDMREDALSLIEQSARKMVALVHFA 90 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG + + +++ ++ R + W + + S+ +A+ L NL + Sbjct: 91 RVAFGAATTSERFTAR-ELQSLVTGLTE-GGRASLDWRIHEGEFSKPQARALTNLAYLTV 148 Query: 128 ASLPRGGKVTISVQDSKNENIFSL---KINGNLARF-PEKFTQIVDGNVESTIDSHDIQF 183 +LP GG I S+ EN F G AR PE T + + + IQ Sbjct: 149 GALPMGGDAVI---QSRVENGFLFIEGFAEGARARLKPEAVTGLAGERLIEGLAGQWIQP 205 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSA 211 Y++ L E L ++D VVL A Sbjct: 206 YWLWLTVVEAGGSLH-VTVEDGRVVLVA 232 >gi|149202794|ref|ZP_01879766.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035] gi|149144076|gb|EDM32110.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035] Length = 199 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 8/129 (6%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L AL+ SRICHD++SP+GAI N LEL+ G +E M LI S+ A+ R++ RLAFG Sbjct: 8 LGALIASRICHDLVSPLGAIGNGLELMGLSGTMEGPEMALIAASAAQALARVRLFRLAFG 67 Query: 73 YT--GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 V L DI + + +Q++ L R A+ILL + +L Sbjct: 68 QAEDDHVTRAEELRDILGTLHAGGRITLTLQIT-----APLPRPMAQILLLGLLCVEQAL 122 Query: 131 PRGGKVTIS 139 P+GG++ +S Sbjct: 123 PQGGQLAVS 131 >gi|304321420|ref|YP_003855063.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis HTCC2503] gi|303300322|gb|ADM09921.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis HTCC2503] Length = 208 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/197 (20%), Positives = 88/197 (44%), Gaps = 7/197 (3%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGY 73 +L+ SR+CHD+ +GAI LE+ ++ E Q++ S+ A+ +K RLA+G Sbjct: 13 SLMSSRLCHDLAGVVGAISAGLEMSEDEDPEMASHAKQVVTESTDKALAIVKLARLAYGS 72 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 +G + + + + + + F A ++ W E+ + + + + +LN+ +V ++PR Sbjct: 73 SGGFEGDLDMNEAREAAKGFFA-HAEAELVWDLEEYAVPKWQGRAMLNVLIVMERAVPRS 131 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193 +V+ S+ + G + + G + ++ ++ Y LLA Sbjct: 132 ---PSTVRLSRVNGHLTASATGKKVKAKDPLLGAFSGQSDD-LEPKEMPAYLAYLLAQSG 187 Query: 194 KIRLLPEIIDDHNVVLS 210 R + D + ++ Sbjct: 188 GARFDTHFVLDEELTVT 204 >gi|89054929|ref|YP_510380.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1] gi|88864478|gb|ABD55355.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1] Length = 180 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 30 IGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 +GAI N +ELL+ G D + LIR + +A R++ RLAFG S + L + + Sbjct: 1 MGAIGNGVELLEMTGKADGPEVDLIRDAVRAAEARIRLFRLAFGGASS-GQVTSLREAKT 59 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 V+E + RV V W D SR+ K+ L + + A +LP GG V I Sbjct: 60 VVEGYFH-QSRVAVVWMANS-DRSRQETKMALLMLLCAETALPMGGTVRIG 108 >gi|218461320|ref|ZP_03501411.1| hypothetical protein RetlK5_18197 [Rhizobium etli Kim 5] Length = 73 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197 F+L G + R P KF +I G +E ID+H IQ YY +LLA E + L Sbjct: 7 FTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTL 55 >gi|218660684|ref|ZP_03516614.1| hypothetical protein RetlI_14387 [Rhizobium etli IE4771] Length = 76 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197 F+L G + R P KF +I G +E ID+H IQ YY +LLA E + L Sbjct: 10 FTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTL 58 >gi|83591859|ref|YP_425611.1| hypothetical protein Rru_A0520 [Rhodospirillum rubrum ATCC 11170] gi|83574773|gb|ABC21324.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 +DL +LC+R+CHD+ IGA++ L + + E + L+ S+ A +RLK +R+ Sbjct: 29 LDLALMLCTRLCHDLAGSIGAVNTGAELLEEEGEAFDPETLALLADSARGAALRLKVLRM 88 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 A G L + + + +A R D ++L+NL MVA Sbjct: 89 AMGLVRGRQPT--LAEAAEGLGGLLAASGRRFALGDPAMGDPGAPTVQLLVNLAMVAADV 146 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 P+ ++T+ E+ + + G + Q + G + D +Q + L Sbjct: 147 WPKAAEITLGA----TEDGYGVWARGAAGPPSASWDQALAGG-DDVPDPRTVQAWLTKRL 201 Query: 190 A 190 A Sbjct: 202 A 202 >gi|144897198|emb|CAM74062.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKF 66 N ++ L LLC+R+CHD+ P+GA EL ++G D E + ++ S+ A RL+ Sbjct: 8 NTDTLMLAELLCARVCHDLAGPVGATAAGAELFQDLGGGDPETLAMVSTSAAGAAARLRL 67 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLN 121 +R A G S+ GL + + E + + WT + RA++LLN Sbjct: 68 LRAALGPAASMPQ--GLSALRTMTEAHLNSLASTAAPTIACRWTDCPDQIDGPRARLLLN 125 Query: 122 LFMVAHASLPRGGKVTISVQDS 143 L ++ +LPRGG + ++ D Sbjct: 126 LMLLGRDALPRGGALDFALTDG 147 >gi|254449745|ref|ZP_05063182.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198264151|gb|EDY88421.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Query: 30 IGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 +GAI N +ELL G+ M L+ S +A ++KF+R+AFG + D + G+I Sbjct: 1 MGAIGNGIELLGLAGVAAGPKMALVSESVENATAKIKFLRMAFGEA-AQDQTVSRGEILS 59 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 +E +A R+ SW D R + L M +LP GG + I++ +N Sbjct: 60 TLE-AMARGGRLSYSWNVAG-DPQRLEVRTALISVMCLETALPMGGDIEITLD--QNRWT 115 Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 S K + L P+ + + G ++ + + + F LLPE+ + Sbjct: 116 ISAKHD-RLTLDPDLWVPLSKGAYQNDLSASKVHF------------GLLPEMAIEAGRT 162 Query: 209 LS 210 LS Sbjct: 163 LS 164 >gi|254440242|ref|ZP_05053736.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307] gi|198255688|gb|EDY80002.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307] Length = 55 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 26/33 (78%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGI 45 +L AL+ SRICHD+I+P+GAI N +ELL G+ Sbjct: 3 NLNALIGSRICHDLINPLGAIGNGIELLGLAGV 35 >gi|126737744|ref|ZP_01753474.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6] gi|126721137|gb|EBA17841.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6] Length = 163 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 45 IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104 ++ ++LI S ++A R++F R+AFG G + +G +I ++ D ++ R+ SW Sbjct: 5 VDGPELELISDSVLNANARIRFFRVAFGAAG--EQQMGRAEIISILAD-MSKAGRMSYSW 61 Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 T + SRE +++ + ++LP GG+VT+ +S+ G E Sbjct: 62 TPLE-GCSREEVRMVFLALLCLESALPYGGQVTMLCSGQS----WSITGEGTKLNLDESL 116 Query: 165 TQIVDGNVE-STIDSHDIQFYYVILLAHENKIRL 197 +DG+ + + I +QF + + A + R+ Sbjct: 117 WGHLDGSDDAAAITPALVQFAMLPVAAKQAGRRI 150 >gi|73667278|ref|YP_303294.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake] gi|72394419|gb|AAZ68696.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake] Length = 210 Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 9/136 (6%) Query: 15 VALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 V L+ +R+ HD+ +GAI N +E L D+ G+ +++M L+ ++ + + K ++ A+ Sbjct: 10 VELVSARLLHDLAGSVGAIVNYIECLSDDEGLCEDMMSLLSDAANDVMNKFKLLKQAYSI 69 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLFMVAHAS 129 + D G + I++++ K++ + W + ++L + K+L N+ M+ Sbjct: 70 S---DDNGDFGVTKHNIKNYLK-RKKILLEWDVDVQLFDVELVEKVNKLLTNMVMILMYF 125 Query: 130 LPRGGKVTISVQDSKN 145 + G KV +++ S + Sbjct: 126 MINGSKVKVTLSKSSD 141 >gi|196233248|ref|ZP_03132094.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222719|gb|EDY17243.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 720 Score = 41.2 bits (95), Expect = 0.096, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK-- 65 ++ V L + HD + + AI ELL+ G E + IR++ A K Sbjct: 337 LEAVGRLAGGVAHDFNNLLTAIMGYSELLEAKLERDGASQEFARQIRITGEKAAALTKQL 396 Query: 66 --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117 F R +D + +GD+E++++ I R+Q+ T + +R RA + Sbjct: 397 LAFSRRQLLSPKVLDLNVVVGDLEKLLQRIIGEHIRIQLQTTTVE---ARVRADPGQLEQ 453 Query: 118 ILLNLFMVAHASLPRGGKVTISVQ 141 ++LNL + A ++PRGG +TIS + Sbjct: 454 VILNLGVNARDAMPRGGTLTISTE 477 >gi|68171194|ref|ZP_00544600.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str. Sapulpa] gi|88658030|ref|YP_507163.1| hypothetical protein ECH_0343 [Ehrlichia chaffeensis str. Arkansas] gi|67999388|gb|EAM86031.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str. Sapulpa] gi|88599487|gb|ABD44956.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 210 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/201 (20%), Positives = 95/201 (47%), Gaps = 21/201 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + L+ +R+ HD+ +GAI N +E L E + ++++ L+ ++ + + K ++ A+ Sbjct: 10 IELVSARLLHDLAGSVGAIVNYIECLSEDESVSEDMVPLLSDAANDVMNKFKLLKQAYSI 69 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHAS 129 + D E I++++ K++ + W ++L + K+L+N+ M+ Sbjct: 70 S---DDNGDFNTTEHNIKNYLK-RKKIVLEWDINAQIFDVELVEKINKLLINVTMILMFF 125 Query: 130 LPRGGKVTISVQDSKNENI------FSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 + G KV + + S N + F+ KI E I+DG++ +++ ++Q Sbjct: 126 MINGTKVKVVLSKSNNNDFLIEIIAFAQKI-----EIHESIQSILDGDMFNQELNTKNVQ 180 Query: 183 FYYVILLAHENKIRLLPEIID 203 ++++L ++ EI D Sbjct: 181 VNFLMMLLKSYNAKMTYEIQD 201 >gi|57239385|ref|YP_180521.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str. Welgevonden] gi|58579353|ref|YP_197565.1| hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str. Welgevonden] gi|58617407|ref|YP_196606.1| hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str. Gardel] gi|57161464|emb|CAH58389.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str. Welgevonden] gi|58417019|emb|CAI28132.1| Hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str. Gardel] gi|58417979|emb|CAI27183.1| Hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str. Welgevonden] Length = 212 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 17/197 (8%) Query: 15 VALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 + L+ +R+ HD+ +GAI N +E L D+ + +M L LS S + KF L Y Sbjct: 10 IELISARLLHDLAGSVGAIVNYIECLGDDESLSGSMMPL--LSDASNDVMNKFKLLKQAY 67 Query: 74 TGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLFMVA 126 + S D+ GD IE+++ K+V + W +L + K+L N+ MV Sbjct: 68 SISDDN----GDFNSTKCNIENYLT-RKKVILEWNVNVQIFDAELIEKINKLLTNMVMVL 122 Query: 127 HASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVEST-IDSHDIQFY 184 + G +V I + S + + N + E I++G++ S + + ++Q Sbjct: 123 MLFVINGNRVKIMLSSMSDGHLLIEVIANAQIIEMHESIKSILNGDITSVELTTRNVQVS 182 Query: 185 YVILLAHENKIRLLPEI 201 +++LL R+ ++ Sbjct: 183 FLMLLISNYNARIAYDV 199 >gi|91775537|ref|YP_545293.1| histidine kinase [Methylobacillus flagellatus KT] gi|91709524|gb|ABE49452.1| histidine kinase [Methylobacillus flagellatus KT] Length = 730 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 36/180 (20%) Query: 21 RICHDIISPIGAIHNSLELLDEV----GIEDEVMQLI-----RLSSMSAIIRLKFMRLAF 71 R H+ +P+ I N L +L++ GI + + ++ R+ S+ + Sbjct: 511 RFVHETSTPLSTIKNYLAILEQKMLLNGIPNRDIAIVNEEIDRVGSLIGNL--------- 561 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------------RERAKIL 119 Y+G + + DI Q+I+D +A+ ++ + G K+ L+ + ++L Sbjct: 562 -YSGEQEHIAASTDINQLIQDLLALHRQTYLQPAGIKVTLNLYPNLPKITTIPYQVRQVL 620 Query: 120 LNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +NL A ++P GG+++IS Q + I ++I+ PE + VEST Sbjct: 621 VNLIRNAAEAMPEGGELSISTFLENQSGSGQGIL-IQISDTGPGIPESVLSKLFTPVEST 679 >gi|307543661|ref|YP_003896140.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307215685|emb|CBV40955.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 697 Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 87/178 (48%), Gaps = 29/178 (16%) Query: 15 VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVM--QLIRLSSMSAIIRL 64 V + + + H+I +P+ I +L++ +DEV E +++ Q+ R+S++ + + L Sbjct: 477 VGEITAGVAHEINNPVAVIQGNLDVARQSLGSRVDEVATEFDLIDDQVHRISAIISKL-L 535 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLS--------RE 114 +F R ++GS + L+ +VI+D + + + + + T E+ D S E Sbjct: 536 QFARPG-EFSGSANRLVP----AEVIDDCLVLTRHLSSKAGVTVERDDRSMASILVERTE 590 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI---NGNLARFPEKFTQIVD 169 ++++NL + A ++P GG +T+ +D E + + I + PE +I D Sbjct: 591 LQQVIINLVVNAIHAMPEGGTLTLETEDRDVEGVPGVAIIVTDTGRGMMPEVLKRIFD 648 >gi|119896364|ref|YP_931577.1| putative sensor histidine kinase [Azoarcus sp. BH72] gi|119668777|emb|CAL92690.1| putative sensor histidine kinase [Azoarcus sp. BH72] Length = 728 Score = 38.5 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 28/143 (19%) Query: 18 LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL-IRLSSMSAIIR--LKFMR 68 L + + H+I +P+ I +LEL+ D + DE+ Q+ ++ + I+ L+F R Sbjct: 461 LTAGVAHEINNPVAVIQGNLELVRELLGGDSAPVADELAQIDAQVGRIHGIVTKLLQFAR 520 Query: 69 LA--FGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVSWTGEKIDLSR-ERA 116 GYT VD+ +GD + IE A+D R V +++R E Sbjct: 521 PGDFAGYTEQVDASGLVGDCLLLTRHNLSRGRIEVTTALDARGTV-------EINRGELQ 573 Query: 117 KILLNLFMVAHASLPRGGKVTIS 139 ++L+NL + A ++P GG++ +S Sbjct: 574 QVLINLIVNAMQAMPDGGRLRLS 596 >gi|94494936|ref|ZP_01301517.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] gi|94425202|gb|EAT10222.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] Length = 996 Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 17/147 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA--IIRLKF 66 M+ V L I HD + + + SL+LL G +D + + I + SA L Sbjct: 619 MEAVGQLTGGIAHDFNNMLTGVIGSLDLLQRHLAAGRQDRIDRYIDTAMTSAQRAASLTQ 678 Query: 67 MRLAFGYTGSVD-SLIGLGDIEQVIEDFI--AVDKRVQV-------SWTGEKIDLSRERA 116 LAF S+D + + +GD+ +ED + +D+ +++ +W + E A Sbjct: 679 RLLAFSRRQSLDVTAVNVGDLVTGMEDMLRRTMDENIRLEVHLPEATWLAKTDHNQLESA 738 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDS 143 LLNL + A ++P GG +TI+ +++ Sbjct: 739 --LLNLAINARDAMPHGGTLTIAARNT 763 >gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 760 Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 24/146 (16%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSM--SAIIR--LKFM 67 + LL + HDI + + I S ELL+ + E Q IR S+ +A++R L F Sbjct: 387 IGLLAGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAALVRQLLAFA 446 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT-GEKIDLSRERA----K 117 R A G V + ++EDF+ + + VS GE R A + Sbjct: 447 RGAVGQHTDVM-------LRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLKQ 499 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDS 143 +L+NL + A ++P GG++T+ V ++ Sbjct: 500 VLMNLCINARDAMPEGGRITLHVTNT 525 >gi|295704436|ref|YP_003597511.1| sporulation kinase KinA [Bacillus megaterium DSM 319] gi|294802095|gb|ADF39161.1| sporulation kinase KinA [Bacillus megaterium DSM 319] Length = 574 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 22/154 (14%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-SMSAIIRLKFMR 68 + + LV L + I H+I +P+ A+ ++LL E + +++I +I +F+ Sbjct: 359 AQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIELITDEFLS 418 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------------- 114 LA + I+ ++E+ + K +V EKI + +E Sbjct: 419 LAKPQAKTYKD----KHIQDILENTL---KLAEVQGITEKIHVKKEIDLHLPLVICEENQ 471 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 ++ N+F A S+P GG VTI ++ EN+ Sbjct: 472 LKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENL 505 >gi|229590484|ref|YP_002872603.1| putative two-component sensor histidine kinase [Pseudomonas fluorescens SBW25] gi|229362350|emb|CAY49252.1| putative two-component sensor histidine kinase [Pseudomonas fluorescens SBW25] Length = 556 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRLKF 66 M+ V L I HD + + I SLELL ++ L ++S + L Sbjct: 183 MEAVGQLTGGIAHDFNNMLTGIIGSLELLRRRVSRGKLDDLDSLIDLGVTSANRAAGLTH 242 Query: 67 MRLAFGYTGSVDS--------LIGLGDI-EQVIEDFIAVDKRVQVS-WTGEKIDLSRERA 116 LAF S+DS + +G++ ++ I + I +D R+ WT E E A Sbjct: 243 RLLAFSRRQSLDSKPVGINQLVFSMGELLQRSINESITLDMRLDDQLWTAEADPNQLESA 302 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 LLNL + A ++P GGK+T+ + +N+F+ Sbjct: 303 --LLNLVINARDAMPGGGKLTVETANRHLDNVFT 334 >gi|27383096|ref|NP_774625.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27356270|dbj|BAC53250.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 764 Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 12/150 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--VMQLIRLSSMSAIIRLKFMRL 69 M+ + L + HD + + A+ SLELL + D+ +++L+ + A+ + Sbjct: 389 METIGQLTGGVAHDFNNLLAAVLGSLELLKKRLPTDDPKILRLVENAMQGAVRGASLTQR 448 Query: 70 AFGYTGSVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + D + D+ +++ E I V+ R + K+D ++ IL Sbjct: 449 MLAFARKQDLRPAVVDVRELVRGMASLLKFEAGIDVETRFPMHLPKVKVDANQLELAIL- 507 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFS 150 NL + A ++P GG++TI+ ++ + E S Sbjct: 508 NLAVNARDAMPDGGQITIAAREEQGEGGLS 537 >gi|288905304|ref|YP_003430526.1| lantibiotic biosynthesis sensor histidine kinase [Streptococcus gallolyticus UCN34] gi|306831385|ref|ZP_07464544.1| sensor histidine kinase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978289|ref|YP_004288005.1| lantibiotic biosynthesis sensor protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732030|emb|CBI13595.1| putative lantibiotic biosynthesis sensor histidine kinase [Streptococcus gallolyticus UCN34] gi|304426445|gb|EFM29558.1| sensor histidine kinase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178217|emb|CBZ48261.1| lantibiotic biosynthesis sensor protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 455 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 25/160 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT------- 74 + HD+ +P+ I +LELL+ + + + + + S I+ + Y+ Sbjct: 240 LAHDVKTPLTVIKGNLELLEMTSLTENQLSFLTSINNSIIVFENYFNAMLTYSRLLSDEN 299 Query: 75 ---GSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSW-TGEKIDLSRERAKILLNLF 123 ++ I L ++ + I+D + ++ + Q S+ G +++L+R I +N Sbjct: 300 NDKETIHLEIFLTELSREIQDILKPTTIQFTLNNQAQCSYFLGNQLNLNRALVNIFVN-- 357 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 V HA GK+ +SV++S N + KI N A F K Sbjct: 358 AVQHAP---NGKIRLSVEESDNH--LNFKIWNNGAPFSAK 392 >gi|262199743|ref|YP_003270952.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262083090|gb|ACY19059.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 906 Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 16/148 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR--LKFMRLAFGYTG 75 H++ +P+ +I ++ELL+ D +Q I + S M+ ++ L RL G Sbjct: 551 HELRNPLSSIRAAVELLELGPTSDVDLQRIHKSLMRQTSHMAKLVDGLLDVSRLELGRIT 610 Query: 76 SVDSLIGL-GDIEQVIEDF-IAVDKRVQV---SWTGEKIDLSRERAK---ILLNLFMVAH 127 ++ + G + V++D+ +++ +R Q S E + +S + A+ IL NL A Sbjct: 611 LERQVLDIRGLVSDVLQDYLVSIKERGQTLHSSIATEALPVSCDPARLSQILDNLLANAM 670 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING 155 PR G +T+++Q K E + +++ G Sbjct: 671 QFTPRDGIITVNLQRGKGEAVLTIRDTG 698 >gi|294499108|ref|YP_003562808.1| sporulation kinase KinA [Bacillus megaterium QM B1551] gi|294349045|gb|ADE69374.1| sporulation kinase KinA [Bacillus megaterium QM B1551] Length = 574 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 22/154 (14%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-SMSAIIRLKFMR 68 + + LV L + I H+I +P+ A+ ++LL E + +++I +I +F+ Sbjct: 359 AQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIELITDEFLS 418 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------------- 114 LA + ++ ++E+ + K +V EKI + +E Sbjct: 419 LAKPQAKTYRD----KHVQDILENTL---KLAEVQGITEKIHVKKEIDLHLPLVLCEENQ 471 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 ++ N+F A S+P GG VTI ++ EN+ Sbjct: 472 LKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENL 505 >gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 970 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 37/211 (17%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR------ 68 + LL + + H++ +P+ I + ++L + DE R S++ I + R Sbjct: 746 IGLLAAGVAHEVNTPLAVISSYAQMLSKQLQGDE-----RRSALLEKITTQTFRASEIVN 800 Query: 69 --LAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQV----SWTGEKIDLSRER- 115 L F TGS S DI +V+ D +A+ RV+V + T KI + + Sbjct: 801 NLLNFSRTGS--SEFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAPTLPKIYGNTGKL 858 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG---NV 172 ++ LNLF+ A ++P GG ++I+ ++ + + +A PE +I D Sbjct: 859 QQVFLNLFLNAKDAMPSGGTLSITTRNGRAVEVEVCDTGSGIA--PEHIQRIYDPFFTTK 916 Query: 173 ESTIDSHD------IQFYYVILLAHENKIRL 197 +S H + Y I+ H KIR+ Sbjct: 917 KSPRQGHSGGTGLGLAVTYGIIQEHAGKIRV 947 >gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 641 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 41/205 (20%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + HD+ SP+ AI +EL++ VG +++ + IR +S T VD L Sbjct: 426 VSHDLRSPLTAILGYVELIERVGTVNDLQRDFIRRIQVS----------VHNITSLVDDL 475 Query: 81 IGLGDIE---QVIEDFIAVDKRVQVSWTGEK-----------IDLSRERAKILLNLFMV- 125 + LG IE ++ +A+D ++ S G K +DL + +L N + Sbjct: 476 LDLGRIEAGFDTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMR 535 Query: 126 ---------AHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDG 170 A P+GGK+ +S++ N+ +F + NG +L +KF + + Sbjct: 536 QMVDNLLDNAIKYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNA 595 Query: 171 NVESTIDSHDIQFYYVILLAHENKI 195 + + + I+ AHE +I Sbjct: 596 APDVSGTGLGLAIVKSIVEAHEGRI 620 >gi|302340427|ref|YP_003805633.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637612|gb|ADK83039.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 390 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 31/183 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELL--DEVG-IEDEVMQLI--------RLSSMSAIIRLKF 66 + S + H+I +P+ I ++++LL + +G +E+ Q + RL ++S I Sbjct: 162 ILSTLAHEIRTPLTVIQSTVDLLIEERIGPLEERQHQFLSSVGSNVQRLVTLSDTILASI 221 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA---- 116 + +T V + DI +VI++ I K +++ ++ K+ LSR A Sbjct: 222 KVESAWFTIKVKPI----DIRKVIKNVALHMRPILEAKGIELRYSFPKL-LSRPPADEGW 276 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171 ++L+NL A + RGG V ISV +++ + S+ NG+ R P+ FT+ G Sbjct: 277 IHQVLVNLVHNAVKHMRRGGSVIISVNENEQAVVVSVNDNGSGIRTGEQPQVFTEFFQGG 336 Query: 172 VES 174 + S Sbjct: 337 ILS 339 >gi|312891708|ref|ZP_07751217.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295791|gb|EFQ72951.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 447 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 24/37 (64%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54 L S I HD+ SP+G I N LELLDE ++ E ++I Sbjct: 226 LMSIIAHDLRSPLGNIQNYLELLDEYSLDAEERKIIE 262 >gi|193212432|ref|YP_001998385.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085909|gb|ACF11185.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 798 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 24/181 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRLS 56 ++I + M+L+ L I HD + +G I + EL LD +E+ + ++ R + Sbjct: 417 QSILLQIQKMELIGQLAGGIAHDFNNMLGVIMGNTELAMCNDGLDP-SVEENLAEIYRAA 475 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSW----TGE 107 SA + + + A T +V S+ +++Q I D +A V K++ W G Sbjct: 476 ERSAEMTSQLLAFARKQT-AVPSVF---EVDQAIGDSLAILQRVVGKKIGFDWHPSGAGC 531 Query: 108 KIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 K+ + + +IL+NL + +AS GG+ TI ++ + + +L+ G + R P ++ Q Sbjct: 532 KVRVDPSQFDQILMNLCL--NASDAMGGEGTIVIKAKRLKVDHTLEHPGGI-REPGEYVQ 588 Query: 167 I 167 I Sbjct: 589 I 589 >gi|254465485|ref|ZP_05078896.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] gi|206686393|gb|EDZ46875.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] Length = 654 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 28/152 (18%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVM----QLIRLSSMSAIIRL 64 V + + + H+I +P+ I +L+L V +E+E Q+ R+S + + + L Sbjct: 436 VGEITASVAHEINNPVAVIQGNLDLARTVLGRHAEPVEEEFRLIDDQVYRISVIVSKL-L 494 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSR- 113 +F R Y+G+ GL +V+ D + + R Q+ TG ++ +SR Sbjct: 495 QFARPE-EYSGAA----GLISPAEVVADCLVL-TRHQIEATGIEAEAHLASTGQVRISRT 548 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 E ++++NL + A ++P GG++T++ +D+ + Sbjct: 549 ELQQVIVNLILNAVQAMPGGGRLTLTAEDTPD 580 >gi|329766324|ref|ZP_08257871.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137226|gb|EGG41515.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 307 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 13/154 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68 M +V + SRI HDI +P+ I S+E L +E Q AI R+ Sbjct: 92 MAIVGEMASRIGHDIRNPLSVIQMSIENLKRTYEINEQQQKQFDKIQRAIFRISHQMDDV 151 Query: 69 LAFGYTGSVD----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLN 121 + F T ++ SLI + +E+ I+ I + + +++ + ++ + KI +N Sbjct: 152 MDFVKTPTISKKQCSLISM--LEESIKR-IKIPENIKIIFPKNDTEILCDEEKITIVFVN 208 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + A SL GG +TIS + +K E + ++ NG Sbjct: 209 MMLNAIQSLDSGGTITISAKSNKKEVMIKIEDNG 242 >gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp. AzwK-3b] gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp. AzwK-3b] Length = 851 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 33/197 (16%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 LS+ A RI H++ +P+ I +L+L+D + E + + S + L + Sbjct: 355 LSNEKAKAHFLGRISHEMRTPLHGILGTLDLMDSTPLSPEQTRYSDIMKSSGQVLLNQIN 414 Query: 69 LAFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDL------------S 112 A T S + L D+EQ+IED IA + G IDL Sbjct: 415 DALDITRSSAEPLPLVETVFDVEQLIED-IATSQGAVAEAHGNTIDLHVQNAPVGAVLGD 473 Query: 113 RER-AKILLNLFMVAHA-SLPRGGKVTISVQ----DSKNENIFSLKIN--------GNLA 158 R+R ++LLNL V++A R G+++I K++NIF ++++ ++ Sbjct: 474 RDRVQQVLLNL--VSNAIKFTRNGRISIEAARVGLHGKHDNIFEIQVSDTGIGIAEDDVE 531 Query: 159 RFPEKFTQIVDGNVEST 175 R + F +++ + E T Sbjct: 532 RIFDDFVRVISSDGERT 548 >gi|212639786|ref|YP_002316306.1| signal transduction histidine kinase, nitrogen specific, contains PAS/PAC domain [Anoxybacillus flavithermus WK1] gi|212561266|gb|ACJ34321.1| Signal transduction histidine kinase, nitrogen specific, contains PAS/PAC domain [Anoxybacillus flavithermus WK1] Length = 418 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + ++ L + I H+I +P+ +I L+++ E DE I L + Sbjct: 191 VAEQLLLKKEKLSVIGELAAGIAHEIRNPLTSIKGFLQMMKETKEVDERFVQIMLDEIER 250 Query: 61 IIRL--KFMRLAFGYTGSVDSL---------IGLGDIEQVIEDF-IAVDKRVQVSWTGEK 108 + ++ + LA S L IGL E ++++ + + R G+K Sbjct: 251 VNQIVSHLLVLAKPQMKSYKPLALHDVLEYVIGLFTYEAILQNVQLKYEPRTSAVVYGDK 310 Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 +L ++ +N+ A ++PRGG +TIS +D + Sbjct: 311 NEL----IQVFVNVVKNALEAMPRGGVLTISAKDEAD 343 >gi|313679063|ref|YP_004056802.1| histidine kinase [Oceanithermus profundus DSM 14977] gi|313151778|gb|ADR35629.1| histidine kinase [Oceanithermus profundus DSM 14977] Length = 779 Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 29/45 (64%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 A + S + H+I +P+ A+ SLELL + G+E EV +LI + SA Sbjct: 110 ARMLSVLAHEIKNPLFAVLGSLELLTQRGLEAEVHKLIETAHTSA 154 >gi|300788032|ref|YP_003768323.1| hypothetical protein AMED_6186 [Amycolatopsis mediterranei U32] gi|299797546|gb|ADJ47921.1| hypothetical protein AMED_6186 [Amycolatopsis mediterranei U32] Length = 429 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRG 133 GS IG D ++ D AV ++ +WTGE D +RER K +L A +L G Sbjct: 70 GSKSGTIGA-DHHELAGDLAAVLNNLEPAWTGEGADRARERIKAFSDLVSAAATTLSSNG 128 Query: 134 GKVT 137 G VT Sbjct: 129 GNVT 132 >gi|269958531|ref|YP_003328318.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel] gi|269848360|gb|ACZ49004.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel] Length = 217 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 11/143 (7%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 +L +R+ HD+ +GA+ + +E L E + +++ + +S I R + +R A+ + Sbjct: 17 VLSARLLHDLAGSVGAMVSHVECLVEDPGSESMLRSLEEASEEIIARFRLLRQAYSASEE 76 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----- 131 S IE ++ Q+ W E E + + L +AHA+L Sbjct: 77 NSS---FDKTRNNIEQYLQKKGVAQLFWEVEAQFADAELVERINRL--LAHAALLSVMLM 131 Query: 132 -RGGKVTISVQDSKNENIFSLKI 153 RG ++ +SV D+ E LK+ Sbjct: 132 IRGSEIAVSVVDAAEEGSVQLKV 154 >gi|253576783|ref|ZP_04854109.1| ATP-binding region ATPase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843814|gb|EES71836.1| ATP-binding region ATPase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 639 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 44/177 (24%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEV---MQLIRLSSMSAIIRLKFM 67 M++++ L + + H++ +P+ L+LL E D+V M L L SAII F+ Sbjct: 419 MEIISELAASVAHEVRNPLQVTRGFLQLLVEKQQNSDKVYLSMALEELDRASAIIT-DFL 477 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 A G V +L V+E+FI ++ IL+ L Sbjct: 478 TFAKPEGGKVTTL-------NVLEEFIHIEG-------------------ILIPL----- 506 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A+L +GGK+T+ + KN L + GN ++F + F I+ ++E+ DIQ + Sbjct: 507 ANL-QGGKITVHI--PKN-----LYVRGNSSKFKQAFINIIKNSIEALRGEGDIQIW 555 >gi|302343682|ref|YP_003808211.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640295|gb|ADK85617.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 934 Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 19/145 (13%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL-LDEV---GIEDEVMQLIRLSSMSAIIRLK-F 66 M+ + +L I HD + +GAI S+EL +D+ G++ ++ I ++++ R K Sbjct: 557 MEAIGVLAGGIAHDFNNILGAILGSVELAMDQAHDHGLDAADLRQI----IASVDRAKEL 612 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----------ERA 116 +R ++ V D+ + +E IAV KR + L+R + Sbjct: 613 VRQILTFSRKVAPQFKAMDLSEEVERTIAVLKRTLPKMIEIETSLARGLPPILADANQIG 672 Query: 117 KILLNLFMVAHASLPRGGKVTISVQ 141 ++LLNL A ++P GGK+ I + Sbjct: 673 QVLLNLASNAAHAMPDGGKINIVTE 697 >gi|258405276|ref|YP_003198018.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797503|gb|ACV68440.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 758 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 13/142 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--KFMRL 69 M+ V +L + HD + + AI +L+LL E Q RL+++ + IR + ++ Sbjct: 375 MESVGILAGGLAHDFNNLLHAIRGNLDLLGHNKPEAHPDQQ-RLATIRSSIRRAERLVQQ 433 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWT-GEKIDLSR----ERAKIL 119 ++ DS DI QV+++ ++ K +++ T G+ + L + +++ Sbjct: 434 LLLFSRKADSRKQNQDINQVVQESARMLESSIPKMIEIELTLGQGLPLVYADIVQVEQVV 493 Query: 120 LNLFMVAHASLPRGGKVTISVQ 141 LNL A +++P+GG++TI Sbjct: 494 LNLGRNAESAMPQGGRLTIETH 515 >gi|295706163|ref|YP_003599238.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294803822|gb|ADF40888.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 401 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 22/158 (13%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIR--LSSMSAII 62 N + ++ L + I H++ +P+ I ++L E M LI+ LS + II Sbjct: 172 NSEKLSVIGHLAASIAHEVRNPLTTIKGFIQLFSETQQPKNTMIYRDLIQHELSQIEHII 231 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSWTGEKID 110 +FM LA +SL+ +++V++ F V K + +G+K Sbjct: 232 -AEFMSLAKREYAYTESLVMTDLLDEVLKQFEPVTGVKNIHIIRHYPKEHPLLISGQKTQ 290 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 L++ I+ N A S+ GGK+T+S++ S E + Sbjct: 291 LTQAFIHIIQN----AIDSMESGGKLTVSIKKSARETL 324 >gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 430 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 11/90 (12%) Query: 92 DFIAVDKRVQVSW----TGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNE 146 D A K + V++ T KID + +R +++LNL A P GGKVTI+++D + Sbjct: 285 DSSAKTKNIDVTFYDQATDMKIDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIKDEGED 344 Query: 147 NIFSLKING------NLARFPEKFTQIVDG 170 S+K G ++ R E+F ++ G Sbjct: 345 AFISVKDTGIGIAKEHMPRLFERFYRVDKG 374 >gi|149278397|ref|ZP_01884534.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39] gi|149230767|gb|EDM36149.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39] Length = 444 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S + HD+ P+ +I LE+L+ +G+E+E QLI + I R L + S Sbjct: 225 LFSIVAHDVRMPLSSIQGYLEILNGIGLEEEEKQLIE-GQLLQITRDTSEMLMNLLSWSK 283 Query: 78 DSLIGLG------DIEQVIEDFIAVDKRVQVS-------WTGEKIDLSRERAKILL---N 121 L G+ D+ + D++ V+K + T ++++ + + L N Sbjct: 284 AQLNGMSIKLKPMDVNATLRDWLKVEKSIAAKKGIRLAILTAGQLNIMADHDMLHLVVRN 343 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 L A P GG+V IS + ++ + + NG Sbjct: 344 LVSNALKFTPEGGEVVISTRYRESNGVIVISDNG 377 >gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 808 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 30/181 (16%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57 +++ + M+LV L I HD + +G I + EL E +E+ + ++ R + Sbjct: 428 QSVLLQIQKMELVGQLAGGIAHDFNNMLGVILGNAELALSSDDLEASVEENLQEIYRAAE 487 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116 SA + + + A T ++ L I +V++D + + +RV GEKI++ Sbjct: 488 RSAEMISQLLAFARKQT----AMPKLVHINEVVQDSLPILQRV----AGEKIEIELRPCG 539 Query: 117 -------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +IL+NL + A ++ GK+ I V K NI + + R P Sbjct: 540 DDCRLHIDPSQIDQILMNLCLNARDAMNGTGKIVIEV---KRINIAPSQYSSGDFRLPGD 596 Query: 164 F 164 F Sbjct: 597 F 597 >gi|194292456|ref|YP_002008363.1| histidine kinase of the two-component signal transduction system [Cupriavidus taiwanensis LMG 19424] gi|193226360|emb|CAQ72309.1| Histidine kinase of the two-component signal transduction system [Cupriavidus taiwanensis LMG 19424] Length = 684 Score = 36.2 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 14/145 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRL--SSMSAIIRLKFM 67 + L L + + H+I +PI I +L++ ++ D V +RL + I L Sbjct: 452 LALAGQLTAGVAHEINNPIAVIQGNLDVARDILGPAADPVRHELRLIDEQVRRIYLLTNR 511 Query: 68 RLAF----GYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSR-ERAK 117 L F Y G+ + L + G ++ V RV++++T ++ +SR E + Sbjct: 512 LLQFVRPEAYAGNTERLDVGEVAGGCVDLVRHMLKDAAIRVELAFTATRRVRISRSELQQ 571 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142 +++NL A ++P GG +T++ QD Sbjct: 572 VIVNLLTNAIHAMPDGGTLTLATQD 596 >gi|118580923|ref|YP_902173.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503633|gb|ABL00116.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 543 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 11/141 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF-GYTGS 76 L +R+ H+I +P+ A+ S++LL + G E Q + + RL + +F Y Sbjct: 328 LAARMAHEIRNPLAAMSGSVQLLADHGTVAENDQRLLAIILRETDRLNALITSFLTYARP 387 Query: 77 VDS---LIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRER---AKILLNLFMVA 126 V I LG + + ++ D+R + E++ +S ++ ++L+NL A Sbjct: 388 VSPHKERISLGGLIDEVRLLVSSDRRFGGITLTAQVPERMTISADQNQLRQVLINLLNNA 447 Query: 127 HASLPRGGKVTISVQDSKNEN 147 ++P GG+V IS + E+ Sbjct: 448 AEAMPEGGRVEISAHLASPED 468 >gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 891 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 79/153 (51%), Gaps = 18/153 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-----IIR--L 64 M+ + L I HD+ + +G I +++L + + ++L+ S+SA +++ L Sbjct: 519 MESIGTLAGGIAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETVSVSARRGADMVKQVL 578 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVD-KRVQVSWT--GEKIDLSRERAK 117 F R G V + L +++++ D FI+VD + +W+ G+ L + Sbjct: 579 SFARGLEGQRTLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGDPTQLH----Q 634 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 +LLNL + A ++P+GG++T++ + + ++ F+ Sbjct: 635 VLLNLCVNARDAMPQGGRLTLNACNQRIDDHFA 667 >gi|319649833|ref|ZP_08003984.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317398413|gb|EFV79100.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 614 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 20/146 (13%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIRLKF 66 ++ ++ L + I H+I +P+ A+ ++LL++ ED M LS + +II +F Sbjct: 393 TLHVIGELAAGIAHEIRNPMTALKGFIQLLEDSVKEDHTMYFNVITTELSRIDSIIN-EF 451 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEK-----IDLSRER 115 + LA DI Q++++ + AV VQ EK S + Sbjct: 452 LILAKPQAVKFVE----KDISQIMKETVDLLSAQAVLHNVQFRTYYEKNLPNVFCESNQM 507 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQ 141 K+ +N+ A +P+GG +T+S+Q Sbjct: 508 KKVFINIIKNAIEVMPKGGYITVSIQ 533 >gi|182417821|ref|ZP_02949135.1| two-component sensor histidine kinase [Clostridium butyricum 5521] gi|237667299|ref|ZP_04527283.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378284|gb|EDT75816.1| two-component sensor histidine kinase [Clostridium butyricum 5521] gi|237655647|gb|EEP53203.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 453 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 26/148 (17%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFG---- 72 S I HD+ +PI I+++++ L+++ IE D++ L + +S+S+ + +R A Sbjct: 228 FLSSISHDLKTPINVIYSAIQ-LEQIYIEKDDIDSLKKYNSISSENCISLIRFANNLIDN 286 Query: 73 ---YTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKI--DLSRER---------- 115 Y+ + + + +I +++ED++ VD VSW G ++ D + E Sbjct: 287 SKIYSQFLTANLKNVNIVEIVEDYVMSYVD---YVSWNGIELIFDTNTEECMIEVDIEFI 343 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS 143 +I+LNL +GGK+ + +++ Sbjct: 344 GRIILNLISNGVKYTAKGGKIYVIIEEK 371 >gi|226941819|ref|YP_002796893.1| CarB [Laribacter hongkongensis HLHK9] gi|226716746|gb|ACO75884.1| CarB [Laribacter hongkongensis HLHK9] Length = 1068 Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 15/85 (17%) Query: 79 SLIGLGDIEQVIEDFIAVDKRV---------------QVSWTGEKIDLSRERAKILLNLF 123 SL G G +VI ++AV + V ++ TGE + + R A+ + Sbjct: 867 SLAGQGVTAEVIPPYVAVKEAVFPFIKFPGVDTILGPEMKSTGEVMGVGRNFAEAFVKAQ 926 Query: 124 MVAHASLPRGGKVTISVQDSKNENI 148 + A LP+GGKV ISV+D+ I Sbjct: 927 LGAGDRLPQGGKVFISVRDADKSGI 951 >gi|295680798|ref|YP_003609372.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295440693|gb|ADG19861.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 794 Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 13/149 (8%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 F M+ V L + HD + + + +LELLD DE + +++A+ R Sbjct: 283 FQSQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHYRDEWTRERVAKAITAVERGSK 342 Query: 64 LKFMRLAFGYTGSVDSLI--------GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L LAFG + ++ G+ D + + +++ I V+ V +D+ + Sbjct: 343 LASQLLAFGRRQPLQPVVINLASALRGMDDLLRRALDETIDVETVVAGGLWNTLVDI-HQ 401 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDS 143 ++LNL + A ++ GGK+T+ + ++ Sbjct: 402 LENVILNLAINARDAMAEGGKLTMELSNA 430 >gi|302342075|ref|YP_003806604.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638688|gb|ADK84010.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 868 Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 13/143 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--KFMRL 69 M+ + L + HD + + A+H ++++ EV + RLS M + +R Sbjct: 491 MEAIGTLAGGVAHDFNNILQALHGYVQIMTASAGLGEVDRQ-RLSQMDQALERASSLVRQ 549 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----------AKIL 119 ++ VD+ +G D+ + +A+ +R ++DL E +I+ Sbjct: 550 LLTFSRKVDAELGPVDLNFEVRQSVALLERTIPKMIAIRLDLEPEPRTISANPIQLEQII 609 Query: 120 LNLFMVAHASLPRGGKVTISVQD 142 LNL + S+P GG +TI ++ Sbjct: 610 LNLAANSRDSMPEGGTLTIRTRN 632 >gi|186685040|ref|YP_001868236.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467492|gb|ACC83293.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1298 Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 52/217 (23%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRL----SSMSA 60 F ++ + L I HD+ + + I + +LL ++DE QL+ L + A Sbjct: 917 FRAQRLESIGTLAGGIAHDLNNILTPILAAAQLLQGTFLQDEERSGQLLALVESNAQRGA 976 Query: 61 IIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS-------W--TG 106 + + + A G+ G V LI +I Q++++ K +++S W TG Sbjct: 977 ALVKQILSFARGFKGERILIQVKYLIA--EIIQIVKE--TFPKSIELSAIIPEDTWPITG 1032 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 L ++L+NL + A +LP GGK+ ISV EN F E +T+ Sbjct: 1033 NTTQLH----QVLMNLVVNARDALPDGGKIAISV-----ENKF----------IDEAYTK 1073 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 + N+++ + +Y+++ ++ + + PEI+D Sbjct: 1074 M---NLDAQVG------HYIMITVADDGVGIPPEILD 1101 >gi|239933106|ref|ZP_04690059.1| cobalamin B12-binding domain-containing protein [Streptomyces ghanaensis ATCC 14672] Length = 199 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 33/153 (21%) Query: 75 GSVDSL-IGLG---DIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERAKILLN---LFMVA 126 G+VD L GL D E ++ D +A V ++V W ++I +++E A +N + ++A Sbjct: 26 GAVDVLRAGLDAGRDKESLLLDVVARVQEKVGTEWAADRISVAQEHAATAINERVIAVLA 85 Query: 127 HAS------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 H S LPR G+VT+S ++G FP + V +D Sbjct: 86 HRSPAERSVLPRRGRVTVSC------------VDGEWHAFPARLVAEVLRLRGWDVDFLG 133 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 Q L+AH+++ D V+LSA L Sbjct: 134 AQTPTAHLVAHQHR-------TDSDAVLLSASL 159 >gi|148284384|ref|YP_001248474.1| hypothetical protein OTBS_0664 [Orientia tsutsugamushi str. Boryong] gi|146739823|emb|CAM79730.1| conserved hypothetical [Orientia tsutsugamushi str. Boryong] Length = 225 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 26/164 (15%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQL----IRLSSMSAII 62 ++++ L + +I HD +GAI N ++ ++ + +++ L I++ S + ++ Sbjct: 1 MNNIKLAQFISVKIFHDFAGGLGAISNGIKYCIDNQYQLNNKLYGLAFDTIKIGSTNLLV 60 Query: 63 RLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIA--VDKRVQVSWT-------GE 107 +L+ R +G S +I V++D+ ++ ++ + + G Sbjct: 61 KLQLYRQMYGSASKSYSDNKLYHEANFDEIRAVLDDYFKALINTKINLVFKDEFFHVKGT 120 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENI 148 ID+S K+L+ L + A +L GG +T+ + QD NI Sbjct: 121 NIDIST--GKLLMCLVISAQDALLHGGDITVKIYRKQDKTQINI 162 >gi|171060406|ref|YP_001792755.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170777851|gb|ACB35990.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 675 Score = 35.0 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 21/152 (13%) Query: 15 VALLCSRICHDIISPIGAIHNSLELL-------------DEVGIEDEVMQLIRLSSMSAI 61 V L + I H++ +PI I +L++L E+ + DE ++ +RL Sbjct: 451 VGQLTASIAHEVNNPIAVIQGNLDVLRSQLPAATAATVHTELRLIDEQIERMRLIVTQL- 509 Query: 62 IRLKFMRLA--FGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK-IDLSR-ERA 116 L+F + A GY VD+ L D ++ +A + VQ +T + ++R E Sbjct: 510 --LQFAKPAEYAGYIAPVDTARVLDDCLVLVGHLLARTRITVQRDFTATRQPGINRNELQ 567 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 ++L+NL + A ++P GG + ++ +D + +++ Sbjct: 568 QVLVNLLVNAIHAMPEGGALGLATRDVEPDSV 599 >gi|327481616|gb|AEA84926.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 528 Score = 35.0 bits (79), Expect = 7.2, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM--SAIIR--L 64 ++ + L I HD + + I L++LD + + +M +R ++ +++ R L Sbjct: 160 IEAIGQLTGGIAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQLL 219 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILL 120 F R SVD ++ +G + ++++ ++ D VQV + + ++D E ++L Sbjct: 220 AFSRRQSLAPESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVDPG-ELELVIL 278 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 NL + A ++P GG + I +++ +E + L+ G+ R Sbjct: 279 NLAVNARDAMPDGGSILIEARNAPDEPVMGLR--GDFVRL 316 >gi|322419241|ref|YP_004198464.1| carbamoyl-phosphate synthase large subunit [Geobacter sp. M18] gi|320125628|gb|ADW13188.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M18] Length = 1082 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%) Query: 79 SLIGLGDIEQVIEDFIAVDKRV---------------QVSWTGEKIDLSRERAKILLNLF 123 +L LG E++I + I+V + V ++ TGE + + AK Sbjct: 883 TLAELGVTEEIIPEHISVKESVFPFAKFPGVDTILGPEMKSTGEVMGIGETFAKAYAKAQ 942 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFS 150 M A+ LP GKV ISV+DS ++I S Sbjct: 943 MGANVKLPATGKVFISVKDSDKKHIVS 969 >gi|146283221|ref|YP_001173374.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145571426|gb|ABP80532.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 561 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM--SAIIR--L 64 ++ + L I HD + + I L++LD + + +M +R ++ +++ R L Sbjct: 193 IEAIGQLTGGIAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQLL 252 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILL 120 F R SVD ++ +G + ++++ ++ D VQV + + ++D E ++L Sbjct: 253 AFSRRQSLAPESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVDPG-ELELVIL 311 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 NL + A ++P GG + I +++ +E + L+ G+ R Sbjct: 312 NLAVNARDAMPDGGSILIEARNAPDEPVMGLR--GDFVRL 349 >gi|116251644|ref|YP_767482.1| nitrogen fixation two component sensor/regulator fusion transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115256292|emb|CAK07373.1| putative nitrogen fixation two component sensor/regulator fusion transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 639 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 10/139 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--IIRLKFMRL 69 M+ V L + HD + + I +LE+L+ E + L+R + +A RL L Sbjct: 263 MEAVGQLTGGLAHDFNNLLAVIIGNLEMLEARLAEPGQLSLLREAQSAADDGARLTSQLL 322 Query: 70 AFGYTGSVDSLI---G--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLN 121 AFG ++ + G LG+ +++ + ++ G ++ ++A++ LLN Sbjct: 323 AFGRRQALAPTVLDVGALLGEFSDLVQRTLGDSVELRTIIPGRRLSAMADKAQLQSALLN 382 Query: 122 LFMVAHASLPRGGKVTISV 140 L + A ++P GG++TI + Sbjct: 383 LSINARDAMPAGGRLTIEI 401 >gi|71907457|ref|YP_285044.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71847078|gb|AAZ46574.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 674 Score = 34.7 bits (78), Expect = 8.4, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 34/152 (22%) Query: 15 VALLCSRICHDIISPIGAIHNSLELL-DEVGIEDE-VMQLIRL----SSMSAIIRLKFMR 68 + L + + H+I +PI I +L++L D +G + E V Q I+L +I K ++ Sbjct: 450 IGQLTAGVAHEINNPIAVIQGNLDVLRDVLGPQAEPVAQEIKLIHDQVQRVRLIVAKLLQ 509 Query: 69 LA-----FGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 A GY V++ L+ GDI IE I +++ + Sbjct: 510 FARPQDYVGYLEPVETGQLIQDCLLLVRHLLNKGDI--AIEQHIDSTRQILCN------- 560 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 E ++++NLF+ A ++P GG + I+V+D Sbjct: 561 -KNELQQVIINLFVNAIQAMPEGGVLKIAVED 591 >gi|322421490|ref|YP_004200713.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127877|gb|ADW15437.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 879 Score = 34.7 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 11/141 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDE----VMQLIRLSSMSAIIR--- 63 M+ V L + HD + + AI EL L +VG ++E V +++ S +A + Sbjct: 507 MEAVGQLAGGVAHDFNNILSAIIGYSELTLRKVGADEEARHYVDEILAASHRAATLTRSL 566 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120 L F R +D +G + + I D ++V+ E++ + +R ++ L+ Sbjct: 567 LAFSRKQPVSLAVIDLNEVVGGFQSFLSRLIKEDIELKVACGTERLPVLADRGQVEQVLM 626 Query: 121 NLFMVAHASLPRGGKVTISVQ 141 NL A ++PRGG + ++ + Sbjct: 627 NLVANARDAMPRGGSLVVTTR 647 >gi|255600751|ref|XP_002537525.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223516032|gb|EEF24858.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 429 Score = 34.7 bits (78), Expect = 9.1, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 LL + HD+ +P+ + S+E+LD E ++ ++Q I M AIIR +F+ G G Sbjct: 221 LLLGGVSHDLRTPLARLRLSVEMLDQETDLKSGMVQDI--DDMDAIIR-QFLAYVRGAEG 277 Query: 76 SVDSLIGLGDIEQVIED 92 V+ GD+ Q+I D Sbjct: 278 EVEV---TGDVNQLIRD 291 >gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1151 Score = 34.7 bits (78), Expect = 9.5, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-----IIR--L 64 M+ + L I HD+ + +G I SL++L + + +L+ L SA ++R L Sbjct: 780 MESIGTLAGGIAHDLNNSLGPILMSLDVLRMKFPDPDSRELLDLIQSSAQRSADMVRQVL 839 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT--GEKIDLSRERAK 117 F R G +V L +IE+++ D + +++ WT G+ L + Sbjct: 840 SFGRGIEGRKMAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGDPTQLH----Q 895 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142 +LLNL + A ++P+GG ++I+ ++ Sbjct: 896 VLLNLCVNARDAMPQGGLLSITAEN 920 Searching..................................................done Results from round 2 >gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] gi|254040568|gb|ACT57364.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 215/215 (100%), Positives = 215/215 (100%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA Sbjct: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL Sbjct: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD Sbjct: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK Sbjct: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 >gi|15889709|ref|NP_355390.1| hypothetical protein Atu2438 [Agrobacterium tumefaciens str. C58] gi|15157619|gb|AAK88175.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 215 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 91/215 (42%), Positives = 143/215 (66%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A Sbjct: 1 MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GS + I G+ E+ +DF A +K+ +VSW+G + + + R K+LL Sbjct: 61 SVRLKFARLAFGASGSAGASIDTGEAEKAAQDFAAAEKKAEVSWSGPRAIVPKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA+ ++PRGG V + +++ + + F + + G + R P KF +I +G +E +D+H Sbjct: 121 NLFLVAYGAIPRGGNVDVLLENPEGDARFEIAVKGRMMRVPAKFVEIYEGRLEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +Q YY +LLA E + + ++ DD V + + + Sbjct: 181 VQPYYTLLLAEEANMTVEYKVHDDRIVFTAKTVAE 215 >gi|190893162|ref|YP_001979704.1| hypothetical protein RHECIAT_CH0003580 [Rhizobium etli CIAT 652] gi|218516916|ref|ZP_03513756.1| hypothetical protein Retl8_26701 [Rhizobium etli 8C-3] gi|190698441|gb|ACE92526.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 215 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 96/213 (45%), Positives = 142/213 (66%), Gaps = 1/213 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++S+PRGG + +++++ + + F+L G + R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 IQ YY +LLA E + L D +V A++ Sbjct: 181 IQPYYTVLLAEECGMTLDHSASPDE-LVFKAVV 212 >gi|325293788|ref|YP_004279652.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3] gi|325061641|gb|ADY65332.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3] Length = 215 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 141/207 (68%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A Sbjct: 1 MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GS + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSAGASIDTGEAEKAAKDFAAAEKKAEVTWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+V+++++PRGG V + ++D + + F + + G + R P KF +I +G +E +D+H Sbjct: 121 NLFLVSYSAIPRGGNVDVVLEDPEGDAKFEITVKGKMMRIPAKFAEIYEGRLEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNV 207 +Q YY +LLA E + + ++ +D V Sbjct: 181 VQPYYTLLLAEEADMAVEYKVHEDRIV 207 >gi|315122692|ref|YP_004063181.1| hypothetical protein CKC_04720 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496094|gb|ADR52693.1| hypothetical protein CKC_04720 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 215 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 143/215 (66%), Positives = 174/215 (80%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M N+ F+LSSMDL ALLCSRICHDIISPIGAIHNSLELLDE GIEDE +QLIRLSSM+A Sbjct: 1 MVNNLSFSLSSMDLSALLCSRICHDIISPIGAIHNSLELLDEEGIEDEAIQLIRLSSMNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 I RLKF+RLAF YTGSV SL+GL +I+Q+I DFIA+D R+ V W E+ DL R+++K+LL Sbjct: 61 IARLKFIRLAFCYTGSVHSLVGLDEIKQIIRDFIAIDNRITVFWVSEETDLFRKKSKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLFM+A+ASL +GG++ IS++DS +NIFSLKINGN R PEKF QI+ +V+ IDSH Sbjct: 121 NLFMIAYASLLKGGEIIISIKDSTADNIFSLKINGNRVRLPEKFIQIMAQDVDLEIDSHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +Q YY LLA EN ++L EIIDD NVVLS L +K Sbjct: 181 VQLYYTALLADENDVKLSYEIIDDQNVVLSVLTKK 215 >gi|307300490|ref|ZP_07580270.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C] gi|307318355|ref|ZP_07597790.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83] gi|306896037|gb|EFN26788.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83] gi|306904656|gb|EFN35240.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C] Length = 220 Score = 267 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 94/211 (44%), Positives = 142/211 (67%), Gaps = 1/211 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ S+PRGG + I++++ + + IF+L G + R P K +++ G E +D+H Sbjct: 121 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 IQ YY +LLA E + + + +V +A Sbjct: 181 IQPYYTVLLAEEAGMAIDV-VSTGEAIVFTA 210 >gi|15966473|ref|NP_386826.1| hypothetical protein SMc00652 [Sinorhizobium meliloti 1021] gi|15075744|emb|CAC47299.1| ChpT histidine phosphotransferase [Sinorhizobium meliloti 1021] Length = 221 Score = 267 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 94/211 (44%), Positives = 142/211 (67%), Gaps = 1/211 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 2 MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 62 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 121 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ S+PRGG + I++++ + + IF+L G + R P K +++ G E +D+H Sbjct: 122 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 181 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 IQ YY +LLA E + + + +V +A Sbjct: 182 IQPYYTVLLAEEAGMAIDV-VSTGEAIVFTA 211 >gi|222086835|ref|YP_002545369.1| hypothetical protein Arad_3506 [Agrobacterium radiobacter K84] gi|221724283|gb|ACM27439.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 215 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 94/212 (44%), Positives = 141/212 (66%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN L+ DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLTGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +VSWTG + + + R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAAAEKKAEVSWTGPRAIIPKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA+ S+PRGG + + +++ + F++ G L R P KF +I G +E +D+H Sbjct: 121 NLFLVAYGSIPRGGNIDVVLENPDLDAKFTITTKGRLMRVPPKFAEICSGTLEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 IQ YY +LLA E+ + L + + ++ + Sbjct: 181 IQPYYTVLLADESGMELSYKATPEELTFIATM 212 >gi|163758755|ref|ZP_02165842.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43] gi|162284045|gb|EDQ34329.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43] Length = 218 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 96/215 (44%), Positives = 143/215 (66%), Gaps = 1/215 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M LIR S+++A Sbjct: 1 MAKNKNLTLAGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ + D+++ DK+ +V W+G + + + + K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAVLDYVSADKKTEVKWSGPRAIIPKNQVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA+ ++PRGG++ + ++ + F L G + R P KF +I G ++ ID+H Sbjct: 121 NLFLVAYGAIPRGGEIDVILETLDTDPKFRLVSRGRMVRVPPKFLEIHSGELDEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 IQ YY +LLA E+ + L D VV +A L + Sbjct: 181 IQPYYTVLLADESGMALSCSANADE-VVFTAQLAE 214 >gi|86358934|ref|YP_470826.1| hypothetical protein RHE_CH03336 [Rhizobium etli CFN 42] gi|86283036|gb|ABC92099.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 215 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 96/213 (45%), Positives = 142/213 (66%), Gaps = 1/213 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAIAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F+L G L R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFTLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 IQ YY +LLA E + L D +V +A + Sbjct: 181 IQPYYAVLLAEECGMTLDHSASPDE-LVFTATV 212 >gi|241206028|ref|YP_002977124.1| hypothetical protein Rleg_3338 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859918|gb|ACS57585.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 215 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 96/212 (45%), Positives = 141/212 (66%), Gaps = 1/212 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 IQ YY +LLA E + L D +V +A+ Sbjct: 181 IQPYYTVLLAQECGMTLDHSASADE-LVFTAV 211 >gi|209550657|ref|YP_002282574.1| hypothetical protein Rleg2_3081 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536413|gb|ACI56348.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 216 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 93/207 (44%), Positives = 138/207 (66%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN+ L+ DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MSKNLNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNV 207 IQ YY +LLA E + L + V Sbjct: 181 IQPYYTVLLAQECGMTLDHSASAEELV 207 >gi|116253501|ref|YP_769339.1| hypothetical protein RL3760 [Rhizobium leguminosarum bv. viciae 3841] gi|115258149|emb|CAK09250.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 216 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 96/212 (45%), Positives = 141/212 (66%), Gaps = 1/212 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 2 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 62 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 121 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 122 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 181 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 IQ YY +LLA E + L D +V +A+ Sbjct: 182 IQPYYTVLLAQECGMTLDHSASADE-LVFTAV 212 >gi|227823289|ref|YP_002827261.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234] gi|227342290|gb|ACP26508.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234] Length = 215 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 93/214 (43%), Positives = 143/214 (66%), Gaps = 1/214 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 2 MAKNPNLTLTGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W+G + + + R K+LL Sbjct: 62 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAAAEKKTEVNWSGPRAIIGKNRVKLLL 121 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ ++PRGG + I++++ + + +F+L G + R P K +++ G E +D+H Sbjct: 122 NLFLIAYGAIPRGGSIDITLENPEFDAVFTLVAKGRMMRVPPKLMELLSGTPEEAVDAHS 181 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 IQ YY +LLA E + + +V +A +E Sbjct: 182 IQPYYTVLLAEEAGMAIDV-TSTGEAIVFTARIE 214 >gi|218682347|ref|ZP_03529948.1| hypothetical protein RetlC8_26202 [Rhizobium etli CIAT 894] Length = 243 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 95/212 (44%), Positives = 141/212 (66%), Gaps = 1/212 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 29 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 88 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 89 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 148 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++++PRGG + +++++ + + F L G L R P KF +I G +E ID+H Sbjct: 149 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGAIEEAIDAHS 208 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 IQ YY +LLA E + L + +V +A+ Sbjct: 209 IQPYYTVLLAQECGMTLDHSASAEE-LVFTAV 239 >gi|218675161|ref|ZP_03524830.1| hypothetical protein RetlG_28959 [Rhizobium etli GR56] Length = 232 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 96/213 (45%), Positives = 143/213 (67%), Gaps = 1/213 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 18 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 77 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF +K+ +V W G + +++ R K+LL Sbjct: 78 SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 137 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF+VA++S+PRGG + +++++ + + F+L G + R P KF +I G +E ID+H Sbjct: 138 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGAIEEAIDAHS 197 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 IQ YY +LLA E + L D +V +A++ Sbjct: 198 IQPYYAVLLAEECGMTLDHSASADE-LVFTAVV 229 >gi|150397806|ref|YP_001328273.1| hypothetical protein Smed_2608 [Sinorhizobium medicae WSM419] gi|150029321|gb|ABR61438.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 220 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 93/211 (44%), Positives = 142/211 (67%), Gaps = 1/211 (0%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 MAKN L+ DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ +DF A +K+ +V+W G + +++ R K+LL Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVTWNGPRAIIAKNRVKLLL 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NLF++A+ S+PRGG + I++++ + + +F+L G + R P K +++ G E +D+H Sbjct: 121 NLFLIAYGSIPRGGIIDITLENPEFDALFTLSAKGRMMRVPPKLVELISGTPEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 IQ YY +LLA E + + + +V +A Sbjct: 181 IQPYYTVLLAEEAGMAIDV-VSTGEEIVFTA 210 >gi|222149590|ref|YP_002550547.1| hypothetical protein Avi_3529 [Agrobacterium vitis S4] gi|221736572|gb|ACM37535.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 216 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 88/205 (42%), Positives = 141/205 (68%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M KN+ L+ DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 1 MLKNVNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 +RLKF RLAFG +GSV + I G+ E+ ++DF A +K+ +++W G + +++ R K+L+ Sbjct: 61 SVRLKFARLAFGASGSVGASIDTGEAEKAVKDFAAAEKKTEITWNGPRAIIAKNRVKLLM 120 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL +VA+ ++PRGG + +++++ + + F++ G + R P KF +I +G +E +D+H Sbjct: 121 NLMLVAYGAIPRGGSLDVTLENPEYDAKFTIVAKGRMLRVPPKFAEICNGQMEEAVDAHS 180 Query: 181 IQFYYVILLAHENKIRLLPEIIDDH 205 IQ YY +LLA E+ + L I + Sbjct: 181 IQPYYTVLLADESSMELKYSIGEGE 205 >gi|153008901|ref|YP_001370116.1| hypothetical protein Oant_1571 [Ochrobactrum anthropi ATCC 49188] gi|239832475|ref|ZP_04680804.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|151560789|gb|ABS14287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] gi|239824742|gb|EEQ96310.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 209 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 78/204 (38%), Positives = 127/204 (62%), Gaps = 2/204 (0%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A RL Sbjct: 3 MPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARL 62 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ + Sbjct: 63 QFARIAFGAAGSAGVQIDTGDAQNVATEYFK-NEKPEFTWEGTRVLLPKNKVKLLLNMLL 121 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183 + +A++PRGG + + ++ E F + + G + R P KF ++ G E ID+H +Q Sbjct: 122 IGNAAIPRGGSLAVRLEGGDTEPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQP 181 Query: 184 YYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 182 YYTLLLAEEAGMKISIHATAEDIV 205 >gi|294852910|ref|ZP_06793583.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026] gi|294821499|gb|EFG38498.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026] Length = 209 Score = 257 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205 >gi|62290478|ref|YP_222271.1| hypothetical protein BruAb1_1585 [Brucella abortus bv. 1 str. 9-941] gi|82700401|ref|YP_414975.1| hypothetical protein BAB1_1613 [Brucella melitensis biovar Abortus 2308] gi|189024705|ref|YP_001935473.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19] gi|237815986|ref|ZP_04594983.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254689778|ref|ZP_05153032.1| hypothetical protein Babob68_06304 [Brucella abortus bv. 6 str. 870] gi|254694267|ref|ZP_05156095.1| hypothetical protein Babob3T_06314 [Brucella abortus bv. 3 str. Tulya] gi|254697922|ref|ZP_05159750.1| hypothetical protein Babob28_09475 [Brucella abortus bv. 2 str. 86/8/59] gi|254730812|ref|ZP_05189390.1| hypothetical protein Babob42_06334 [Brucella abortus bv. 4 str. 292] gi|256258030|ref|ZP_05463566.1| hypothetical protein Babob9C_11918 [Brucella abortus bv. 9 str. C68] gi|260547009|ref|ZP_05822748.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260755310|ref|ZP_05867658.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758531|ref|ZP_05870879.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260762355|ref|ZP_05874698.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884327|ref|ZP_05895941.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261214574|ref|ZP_05928855.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|297248861|ref|ZP_06932579.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196] gi|62196610|gb|AAX74910.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616502|emb|CAJ11569.1| conserved hypothetical protein [Brucella melitensis biovar Abortus 2308] gi|189020277|gb|ACD72999.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19] gi|237789284|gb|EEP63495.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|260096059|gb|EEW79936.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668849|gb|EEX55789.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260672787|gb|EEX59608.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675418|gb|EEX62239.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260873855|gb|EEX80924.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916181|gb|EEX83042.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|297176030|gb|EFH35377.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196] Length = 209 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 77/205 (37%), Positives = 128/205 (62%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182 ++ + ++PRGG + + ++ S + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGSDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205 >gi|148560434|ref|YP_001259465.1| hypothetical protein BOV_1541 [Brucella ovis ATCC 25840] gi|163843847|ref|YP_001628251.1| hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445] gi|225628032|ref|ZP_03786068.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|254702315|ref|ZP_05164143.1| hypothetical protein Bsuib55_15846 [Brucella suis bv. 5 str. 513] gi|254714813|ref|ZP_05176624.1| hypothetical protein BcetM6_16034 [Brucella ceti M644/93/1] gi|254717873|ref|ZP_05179684.1| hypothetical protein BcetM_16001 [Brucella ceti M13/05/1] gi|254719623|ref|ZP_05181434.1| hypothetical protein Bru83_08780 [Brucella sp. 83/13] gi|256032122|ref|ZP_05445736.1| hypothetical protein BpinM2_16003 [Brucella pinnipedialis M292/94/1] gi|256061644|ref|ZP_05451783.1| hypothetical protein Bneo5_14955 [Brucella neotomae 5K33] gi|256160318|ref|ZP_05458012.1| hypothetical protein BcetM4_15031 [Brucella ceti M490/95/1] gi|256255523|ref|ZP_05461059.1| hypothetical protein BcetB_14808 [Brucella ceti B1/94] gi|256370011|ref|YP_003107522.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915] gi|260169257|ref|ZP_05756068.1| hypothetical protein BruF5_13023 [Brucella sp. F5/99] gi|261219719|ref|ZP_05934000.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261222733|ref|ZP_05937014.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261322608|ref|ZP_05961805.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325654|ref|ZP_05964851.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752881|ref|ZP_05996590.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261758770|ref|ZP_06002479.1| conserved hypothetical protein [Brucella sp. F5/99] gi|265984634|ref|ZP_06097369.1| conserved hypothetical protein [Brucella sp. 83/13] gi|265989234|ref|ZP_06101791.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265998695|ref|ZP_06111252.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|306837742|ref|ZP_07470610.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653] gi|306844598|ref|ZP_07477185.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1] gi|148371691|gb|ABQ61670.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|163674570|gb|ABY38681.1| Hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445] gi|225617195|gb|EEH14241.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|256000174|gb|ACU48573.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915] gi|260921317|gb|EEX87970.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260924808|gb|EEX91376.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295298|gb|EEX98794.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261301634|gb|EEY05131.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261738754|gb|EEY26750.1| conserved hypothetical protein [Brucella sp. F5/99] gi|261742634|gb|EEY30560.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|262553319|gb|EEZ09153.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264661431|gb|EEZ31692.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|264663226|gb|EEZ33487.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306275042|gb|EFM56805.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1] gi|306407198|gb|EFM63409.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653] Length = 209 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205 >gi|306843048|ref|ZP_07475673.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2] gi|306286778|gb|EFM58324.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2] Length = 207 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 77/204 (37%), Positives = 126/204 (61%), Gaps = 2/204 (0%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A RL Sbjct: 1 MPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARL 60 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ + Sbjct: 61 QFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNMLL 119 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183 + + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H IQ Sbjct: 120 IGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSIQP 179 Query: 184 YYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 180 YYTLLLAEEAGMKISIHATAEDIV 203 >gi|225853071|ref|YP_002733304.1| hypothetical protein BMEA_A1650 [Brucella melitensis ATCC 23457] gi|256045214|ref|ZP_05448112.1| hypothetical protein Bmelb1R_12036 [Brucella melitensis bv. 1 str. Rev.1] gi|256114166|ref|ZP_05454920.1| hypothetical protein Bmelb3E_15252 [Brucella melitensis bv. 3 str. Ether] gi|256263446|ref|ZP_05465978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260565188|ref|ZP_05835672.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991647|ref|ZP_06104204.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995485|ref|ZP_06108042.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|225641436|gb|ACO01350.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260151256|gb|EEW86350.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262766598|gb|EEZ12387.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263002431|gb|EEZ15006.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093454|gb|EEZ17504.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|326409614|gb|ADZ66679.1| conserved hypothetical protein [Brucella melitensis M28] gi|326539317|gb|ADZ87532.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 209 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 126/205 (61%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205 >gi|254710629|ref|ZP_05172440.1| hypothetical protein BpinB_10236 [Brucella pinnipedialis B2/94] gi|261318201|ref|ZP_05957398.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261297424|gb|EEY00921.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] Length = 209 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 128/205 (62%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY++LLA E +++ + V Sbjct: 181 PYYMLLLAEEAGMKISIHATAEDIV 205 >gi|17986707|ref|NP_539341.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M] gi|17982330|gb|AAL51605.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M] Length = 207 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 125/204 (61%), Gaps = 2/204 (0%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 + LS++DL ALLCSRICHDIISP+GAI+N LELL+E +++ M LI+ S+ +A RL Sbjct: 1 MPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASARL 60 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ + Sbjct: 61 QFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNMLL 119 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183 + + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 120 IGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQP 179 Query: 184 YYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 180 YYTLLLAEEAGMKISIHATAEDIV 203 >gi|23502461|ref|NP_698588.1| hypothetical protein BR1598 [Brucella suis 1330] gi|161619538|ref|YP_001593425.1| hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365] gi|254704843|ref|ZP_05166671.1| hypothetical protein Bsuib36_13174 [Brucella suis bv. 3 str. 686] gi|260565915|ref|ZP_05836385.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261755539|ref|ZP_05999248.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|23348452|gb|AAN30503.1| conserved hypothetical protein [Brucella suis 1330] gi|161336349|gb|ABX62654.1| Hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365] gi|260155433|gb|EEW90513.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261745292|gb|EEY33218.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 209 Score = 254 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ ++ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSNARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182 ++ + ++PRGG + + ++ + F + + G + R P KF ++ G E ID+H +Q Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY +LLA E +++ + V Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205 >gi|319781796|ref|YP_004141272.1| hypothetical protein Mesci_2070 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167684|gb|ADV11222.1| Protein of unknown function DUF2328 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 209 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMKLIRQSARNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS LI GD E V F+ +++ +++W G + L + + K+LLNL +VA Sbjct: 65 ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGPRALLPKNKVKLLLNLILVA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185 +A++PRGGK+++++++ + E F+L G + R P KF ++ G E ID+H +Q YY Sbjct: 124 NAAIPRGGKLSVTLENLETEPRFALTSAGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211 +LLA E + + + V+ +A Sbjct: 184 TLLLAREAGMTIAIHATPEEIVLSAA 209 >gi|13472495|ref|NP_104062.1| hypothetical protein mlr2813 [Mesorhizobium loti MAFF303099] gi|14023241|dbj|BAB49848.1| mlr2813 [Mesorhizobium loti MAFF303099] Length = 209 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS LI GD E V F+ +++ +++W G + L + + K+LLNL +VA Sbjct: 65 ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGARALLPKNKVKLLLNLILVA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185 +A++PRGGK+ +++++ + E SL +G + R P KF ++ G E ID+H +Q YY Sbjct: 124 NAAIPRGGKLVVTLENLETEPRISLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211 +LLA E + + + V+ +A Sbjct: 184 TLLLAREAGMTISIHATAEEIVLSAA 209 >gi|319408929|emb|CBI82586.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 212 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 85/205 (41%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +L DL ALLCSRICHD+ISPIGAI N++EL DE G+E++ +QL+R S A Sbjct: 2 TSTVSLKFADLTALLCSRICHDLISPIGAIQNAMELYDEGGVEEDALQLVRSSVSKASAC 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG +GSVDS I EQV + ++A ++R + W + L + K+LLNL Sbjct: 62 LQFFRLAFGASGSVDSQIDTRFAEQVAQQYMA-EERAILKWQAPTLLLPKNEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQ 182 ++A+ ++ RGG++ +++ N F +I G + R P +F ++ + +E TID+H IQ Sbjct: 121 LIANTTISRGGEIVVTIAQDINTRSFRFEICGQILRIPPRFVELYNKKALEETIDAHAIQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 FYY ILLA + L D H + Sbjct: 181 FYYTILLAELTGMTLNIYETDSHVI 205 >gi|49475925|ref|YP_033966.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1] gi|49238733|emb|CAF27989.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1] Length = 212 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 81/210 (38%), Positives = 128/210 (60%), Gaps = 3/210 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+R S SA R Sbjct: 2 TLAVSLESTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRWSVASASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG+ G+ I +EQV + ++ +++ + W + L + K+LLNL Sbjct: 62 LQFARLAFGFAGTSRGQIDTRSVEQVAQQYMK-EEKATLKWQIPALLLPKNEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ RGG++ + + +N++ F +I G R P F + +G + E ID+H IQ Sbjct: 121 LIANATVSRGGEIVVMIVQGENQHSFRFEICGKTLRIPSHFIALYNGEIQEEFIDAHVIQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 FYY +LLA +++ D V+L + Sbjct: 181 FYYTMLLAQMTGMKININET-DSCVILEST 209 >gi|85713641|ref|ZP_01044631.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A] gi|85699545|gb|EAQ37412.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A] Length = 215 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ + + LIR S+ +A RL+F Sbjct: 12 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDNPKPDDREFALDLIRKSAKTASARLQF 71 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GSV + I LGD + + D ++ ++W ++ L + R K+LLNL ++A Sbjct: 72 CRLAFGAAGSVGAQIDLGDAQNMARGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIA 130 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +T+ F + G AR P+ + +D+H +Q YY Sbjct: 131 QQTIPRGGVLTVDPLGEGEAMGFRITAAGQNARVPQPIADRLATGSSGVVDAHAVQPYYT 190 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA + + ID VV +A Sbjct: 191 RLLADACGVSISL-AIDGDKVVATA 214 >gi|121602758|ref|YP_989298.1| hypothetical protein BARBAKC583_1020 [Bartonella bacilliformis KC583] gi|120614935|gb|ABM45536.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 212 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 123/205 (60%), Gaps = 2/205 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSR+CHD+ISPIGAI N++EL DE +++ +QL+R+S A R Sbjct: 2 TLTASLKSTDLAALLCSRLCHDLISPIGAIQNAMELYDEGCADEDALQLVRISVAKASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG GSV I +EQV + ++A +++ + W + L ++ K LLNL Sbjct: 62 LQFARLAFGNAGSVGCQIDTSFVEQVAQQYMA-EEKATLKWQAPSLLLPKDEVKFLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182 +A+A++PRGG++ + + + F +I G + + F ++ +G E +D+H IQ Sbjct: 121 FIANATVPRGGEIAMMILQDADTRSFRFEIYGKILKISPYFIELNNGKLPEEPVDAHTIQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 YY LLA + +++ +DH + Sbjct: 181 LYYTALLAEISAMKVSIHETNDHLI 205 >gi|27377302|ref|NP_768831.1| hypothetical protein blr2191 [Bradyrhizobium japonicum USDA 110] gi|27350445|dbj|BAC47456.1| blr2191 [Bradyrhizobium japonicum USDA 110] Length = 237 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 ++L ALLCSR+CHD+ISP+GAI N LE+LD+ + + LIR S+ +A RL+F Sbjct: 34 DMLELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPEDREFALDLIRKSAKTASARLQF 93 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + I D + ++W ++ L + R K+LLN+ +VA Sbjct: 94 CRLAFGAAGSSGAQIDLGDAQTMARGHIE-DGKCTITWNLPRLLLPKNRVKLLLNMLVVA 152 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +TI F + G+ AR P+ +++ G D+H IQ YY Sbjct: 153 QHTIPRGGTLTIDPVGEGETMSFRITATGHNARLPQNIAELLSGERGPAADAHAIQPYYT 212 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA + + +V ++ Sbjct: 213 RLLAQACGLTVTLAPEGAAIIVTAS 237 >gi|209886231|ref|YP_002290088.1| hypothetical protein OCAR_7117 [Oligotropha carboxidovorans OM5] gi|209874427|gb|ACI94223.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 212 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 ++DL ALL SR+CHD+I+P+GAI N LE++D ++ + LIR S++S RL+F Sbjct: 9 DALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQF 68 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+A+G GS + I LGD ++V + D + +++W + L + R K+LLN+ ++A Sbjct: 69 CRIAYGAAGSAGTQIDLGDAQKVARGHLE-DAKTKITWNLPHMLLPKNRVKLLLNMMVIA 127 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG++ I F ++ G AR P + ++ +++ +H +Q YY Sbjct: 128 QQAIPRGGELVIDPLGEGETMGFRIRAVGQNAREPHGIAEQLNPENAASVTAHAVQPYYT 187 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA ++ DD V+ +A Sbjct: 188 ALLAQACGFKVSMTKEDDAVVIATA 212 >gi|75674717|ref|YP_317138.1| hypothetical protein Nwi_0519 [Nitrobacter winogradskyi Nb-255] gi|74419587|gb|ABA03786.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 215 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 4/201 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ + + LIR S+ +A RL+F Sbjct: 12 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSARTASARLQF 71 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GSV + I LGD + + + D ++ ++W ++ L + R K+LLNL ++A Sbjct: 72 CRLAFGAAGSVSAQIDLGDAQNIAKGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIA 130 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +TI F + G AR + +++ + +H +Q YY Sbjct: 131 QQTIPRGGVLTIDPLGEGEAMGFQITAAGLNARVSQPVAELLASGSTGAVYAHAVQPYYT 190 Query: 187 ILLAHENKIRLLPEIIDDHNV 207 LLA I + D V Sbjct: 191 RLLAEACGISISLVAEGDKVV 211 >gi|163868752|ref|YP_001609969.1| hypothetical protein Btr_1642 [Bartonella tribocorum CIP 105476] gi|161018416|emb|CAK01974.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 212 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 83/210 (39%), Positives = 128/210 (60%), Gaps = 3/210 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 +L MDL ALLCSRICHD+ISP+GAI N++EL D+ G E+E +QL+RLS +SA R Sbjct: 2 TFAVSLKPMDLAALLCSRICHDLISPVGAIQNAMELYDDGGAEEEALQLVRLSVVSASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG+ G+ I EQV + ++ + + + W L ++ K+LLNL Sbjct: 62 LQFARLAFGFAGASGGQIDTRAAEQVAQQYMQQE-KATLKWQAPSFLLQKDEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ RGG++ + +N+ F +I G R P F + G V E ID+H IQ Sbjct: 121 LIANATVSRGGEIVFMIVQQENKRSFRFEIFGKTLRIPPHFLALYHGEVKEELIDAHVIQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 FYY +LL+ ++++ + DH +VL ++ Sbjct: 181 FYYTMLLSQRTEMKINIDE-KDHCIVLESV 209 >gi|299134357|ref|ZP_07027550.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2] gi|298591104|gb|EFI51306.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2] Length = 213 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 115/204 (56%), Gaps = 4/204 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 ++DL ALL SR+CHD+I+P+GAI N LE++D ++ + LIR S++S RL+F Sbjct: 9 DALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQF 68 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+A+G GS + I LGD ++V + D + +++W + L++ R K+LLN+ ++A Sbjct: 69 CRIAYGAAGSAGTQIDLGDAQKVARGHLE-DGKTKLTWNLPHMLLAKNRVKLLLNMLVIA 127 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG++ I + F ++ G AR P ++ ++I +H +Q YY Sbjct: 128 QQAIPRGGELVIDPIGEGDTMGFRIRAVGANAREPHSIADQLNLENAASITAHAVQPYYT 187 Query: 187 ILLAHENKIRLLPEIIDDHNVVLS 210 LLA ++ +D VV + Sbjct: 188 ALLAQACGFKVGLTKEEDAVVVAT 211 >gi|240850929|ref|YP_002972329.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup] gi|240268052|gb|ACS51640.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup] Length = 212 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 81/210 (38%), Positives = 132/210 (62%), Gaps = 3/210 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L+ DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+RLS SA R Sbjct: 2 TLDISLNPTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRLSVASAAAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG+ G+ I EQV + ++ +++ + W + L ++ K+LLNL Sbjct: 62 LQFARLAFGFAGASGGQIDTRAAEQVAQQYMK-EEKATLKWQASSLLLPKDEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+A++ RGG++ + + +N+ F ++ G R P F + G V E ID+H IQ Sbjct: 121 LIANATVSRGGEIVVMILQEENKRSFRFEVFGKTLRIPPHFLALFRGEVQEELIDAHVIQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 FYY +LL+ ++++ + +DH +VL ++ Sbjct: 181 FYYTMLLSQMTEMKINIDE-NDHCIVLESV 209 >gi|49474505|ref|YP_032547.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse] gi|49240009|emb|CAF26424.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse] Length = 212 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 3/210 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISP+GAI N++EL DE G +++ +QL+R + SA R Sbjct: 2 TLAVSLKSTDLAALLCSRICHDLISPVGAIQNAMELYDEGGTDEDTLQLVRWAVASASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F+RLAFG++G+ S + EQV + ++ +++ + W + L + K+LLNL Sbjct: 62 LQFLRLAFGFSGAAGSQVDTRSAEQVAQQYMK-EEKATLKWQAPALLLPKNEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182 ++A+ + RGG++ + + + + F +I G R P F + +G + E ID+ IQ Sbjct: 121 LIANTTASRGGEIVVMILQDEYKRSFRFEICGKTLRIPAHFVALYNGRIQEELIDAQVIQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 FYY +LLA + + E +VL + Sbjct: 181 FYYTMLLAEMTAMEINIEETAS-CIVLEST 209 >gi|39934696|ref|NP_946972.1| hypothetical protein RPA1626 [Rhodopseudomonas palustris CGA009] gi|192290212|ref|YP_001990817.1| hypothetical protein Rpal_1816 [Rhodopseudomonas palustris TIE-1] gi|39648546|emb|CAE27067.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] gi|192283961|gb|ACF00342.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 218 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ ++LIR S+ +A RL+F Sbjct: 15 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALELIRKSAKTASARLQF 74 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + + D + +++W ++ L++ R K+LLN+ ++A Sbjct: 75 CRLAFGAAGSAGAQIDLGDAQNMARGHLEDD-KTKLTWNLPRLLLAKNRVKLLLNMLVIA 133 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +TI + F + G AR P +++G I+SH +Q YY Sbjct: 134 QQTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYT 193 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA + + D VV ++ Sbjct: 194 RLLAQACGLTVSLAPEGDTMVVTAS 218 >gi|328542567|ref|YP_004302676.1| hypothetical protein SL003B_0947 [polymorphum gilvum SL003B-26A1] gi|326412313|gb|ADZ69376.1| hypothetical protein SL003B_0947 [Polymorphum gilvum SL003B-26A1] Length = 214 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 5/207 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL 64 +LSS+DL AL+ SRICHDIISP+GAI N LE+LDE G + + M LIR S+ A +L Sbjct: 6 DLSSLDLSALVSSRICHDIISPVGAIINGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RLAFG GS + I LGD + V F+ +++ + W ++ + + K+LLNL + Sbjct: 66 QFARLAFGAAGSAGAEIDLGDAQVVASGFME-NEKSNLIWQVDRHLMPKNFVKLLLNLVL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 +A+ +PRGG +T+S+ +F+L+ G R P + + G +D+H +Q Sbjct: 125 IANQCVPRGGDITVSMTGEPAAPVFTLEAKGLNPRIPLGMQETLGGQEPERVDAHSVQPI 184 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211 Y LLA E + + DD V L+A Sbjct: 185 YTFLLARECGMTISLSK-DDDVVRLTA 210 >gi|319898470|ref|YP_004158563.1| hypothetical protein BARCL_0294 [Bartonella clarridgeiae 73] gi|319402434|emb|CBI75975.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 212 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 127/210 (60%), Gaps = 3/210 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE G +++ +QL+RLS +A R Sbjct: 2 TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGGADEDALQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G V+ I +Q+ + ++ +++ + W + L ++ K+LLNL Sbjct: 62 LQFARLAFGSAGGVEDKIDTDFAKQISQQYMK-EEKATLKWQASSLLLQKDEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-IDSHDIQ 182 ++A+ + G++++ + N+ +F +I G + R P +F ++ +G + ID+H +Q Sbjct: 121 LIANTIVSHNGEISVIILQDTNKRVFRFEICGKILRTPSRFIELYNGQMSEELIDAHVVQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 YY ILLA +++ D ++L ++ Sbjct: 181 LYYTILLAEITTMKISIHETSD-CIILESV 209 >gi|220921682|ref|YP_002496983.1| hypothetical protein Mnod_1690 [Methylobacterium nodulans ORS 2060] gi|219946288|gb|ACL56680.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 215 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 6/197 (3%) Query: 19 CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L++ G+ D + LIR S+ A RL+F R+AFG G Sbjct: 16 CSRVCHDVISPVGAIVNGLEVLEDENDAGMRDFAIDLIRKSARQASARLQFARIAFGAAG 75 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 SV + I L D E V D++ +++W+ + + + K+LLNL ++A ++PRGG Sbjct: 76 SVGATIDLADAEGVARGLFG-DEKTKLTWSAPRALFPKNKVKLLLNLVIIAVTAIPRGGV 134 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENK 194 + ++V +F L G+ AR P ++ G E T+D+H +Q YY L+A Sbjct: 135 IDVAVTGEAEAPVFVLTCKGSHARIPAHVEALMAGTPESGTVDAHGVQPYYAGLVARAAG 194 Query: 195 IRLLPEIIDDHNVVLSA 211 +++ ID V + A Sbjct: 195 MQV-GFAIDGDTVTIRA 210 >gi|170742948|ref|YP_001771603.1| hypothetical protein M446_4839 [Methylobacterium sp. 4-46] gi|168197222|gb|ACA19169.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 215 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 5/190 (2%) Query: 19 CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L D+ G+ D + LIR S+ A RL+F R+AFG G Sbjct: 16 CSRVCHDVISPVGAIVNGLEVLEDEDDPGMRDFAIDLIRKSAKQASARLQFARIAFGAAG 75 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 SV + I L D E V + D++ +++W+ + + + K+LLNL ++A ++PRGG Sbjct: 76 SVGATIDLADAESVARGLFS-DEKTKLAWSAPRALFPKNKVKLLLNLVVIAVTTIPRGGL 134 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENK 194 + ++V +F L G+ AR P ++ G+ E T+D+H +Q YY L+A Sbjct: 135 IDVAVTGEAEAPVFVLTCRGSHARIPAHVEALIAGSPESGTVDAHGVQPYYAGLVARAAG 194 Query: 195 IRLLPEIIDD 204 + + I D Sbjct: 195 MTVSFGIDGD 204 >gi|316935206|ref|YP_004110188.1| hypothetical protein Rpdx1_3895 [Rhodopseudomonas palustris DX-1] gi|315602920|gb|ADU45455.1| Protein of unknown function DUF2328 [Rhodopseudomonas palustris DX-1] Length = 218 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 15 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSAKTASARLQF 74 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + + D + +++W ++ L++ R K+LLN+ ++A Sbjct: 75 CRLAFGAAGSAGAQIDLGDAQNMARGHLEDD-KTKLTWNLPRLLLAKNRVKLLLNMLIIA 133 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +TI + F + G AR P +++G I+SH +Q YY Sbjct: 134 QQTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYT 193 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA + + D VV ++ Sbjct: 194 RLLAQACGLTVSLAPEADTMVVTAS 218 >gi|115526278|ref|YP_783189.1| hypothetical protein RPE_4285 [Rhodopseudomonas palustris BisA53] gi|115520225|gb|ABJ08209.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 224 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 S++L ALLCSR+CHD+ISP+GAI N LE+LD+ ++ + LIR S+ +A RL+F Sbjct: 21 DSLELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKPEDREFALDLIRKSAKTASARLQF 80 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + D + ++ W ++ + + RAK+LLN+ ++A Sbjct: 81 CRLAFGAAGSAGAQIDLGDALNMARGHLEDD-KTKIEWNLPRVLMPKNRAKLLLNMLVIA 139 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +T+ F + NG AR P +++ +S ID+H +Q YY Sbjct: 140 QQTIPRGGVLTVDPIGEGEAMAFRVAANGLNARTPHNVVEMLSTGPKSAIDAHAVQPYYT 199 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA +R+ D VV ++ Sbjct: 200 RLLAEACGLRVSLAPEGDAVVVTAS 224 >gi|319405235|emb|CBI78840.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 212 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 72/210 (34%), Positives = 125/210 (59%), Gaps = 3/210 (1%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE +++ +QL+RLS +A R Sbjct: 2 TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDALQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG G ++ I EQV + ++ +++ + W L ++ K+LLNL Sbjct: 62 LQFARMAFGSIGGIEDKIDTSFAEQVSQQYMK-EEKAVLKWQAASFLLPKDEVKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182 ++A+A++ +GG++ + + ++ +F KI G + R P F ++ +G + +D+ Q Sbjct: 121 LIANATVVQGGEIGVVILQDTDQRLFRFKICGKMLRVPSHFIELYNGTMPKELVDARVAQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 YY +LLA +++ D ++L ++ Sbjct: 181 LYYTVLLAEITAMKISIHETSD-CIILESI 209 >gi|110634560|ref|YP_674768.1| hypothetical protein Meso_2211 [Mesorhizobium sp. BNC1] gi|110285544|gb|ABG63603.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 209 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ MQLIR S+++A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGTDEDAMQLIRASAVNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS I GD E V FI +++ + W G + L + R K+LLNL ++A Sbjct: 65 ARIAFGAAGSAGMQIDTGDAEAVATAFI-RNEKPDLEWIGGRAFLPKNRVKLLLNLLLIA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185 +A++PRGGK+T+ +++ +F++ +G + R P KF + G ++ ID+H +QFYY Sbjct: 124 NAAIPRGGKLTVRLENLDASPLFTITAHGPMVRVPAKFLDLHAGRQLDEAIDAHSVQFYY 183 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211 +LLA E + + V+ +A Sbjct: 184 TLLLARETGATISIHASPEEIVLKAA 209 >gi|319403799|emb|CBI77383.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 212 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 76/202 (37%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE +++V+QL+RLS +A R Sbjct: 2 TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G V+ + EQV + ++ +++ + W L ++ K+LLNL Sbjct: 62 LQFARLAFGAVGGVEDKVDTIFAEQVSQQYMK-EEKAILKWQAASFLLPKDEIKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182 ++A+A++ +GG++ + + + ++ +F +I G + R P F ++ +G E ID+ Q Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFEIRGKILRIPSHFIELYNGKMPEELIDARIAQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDD 204 FYY ILLA +++ D Sbjct: 181 FYYTILLAEITAMKISIHETSD 202 >gi|146338552|ref|YP_001203600.1| putative Signal transduction histidine kinase [Bradyrhizobium sp. ORS278] gi|146191358|emb|CAL75363.1| Conserved hypothetical protein; putative Signal transduction histidine kinase [Bradyrhizobium sp. ORS278] Length = 220 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 +++L ALLCS++CHD+ISP+GAI N LE+LD+ D ++LIR S+ +A RL+F Sbjct: 17 DTLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQF 76 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + I D + ++W ++ L + R K+LLN+ +VA Sbjct: 77 CRLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVA 135 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +TI F + G AR P+ ++ G ++STID+H +Q YY Sbjct: 136 QQTIPRGGVLTIDPIGEGESMSFRVSATGLNARLPQNIVNLLGGELQSTIDAHAVQPYYT 195 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA +++ VV +A Sbjct: 196 RLLADACGLKVTLAADGAAMVVQAA 220 >gi|148257789|ref|YP_001242374.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1] gi|146409962|gb|ABQ38468.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1] Length = 220 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 +++L ALLCS++CHD+ISP+GAI N LE+LD+ D ++LIR S+ +A RL+F Sbjct: 17 DTLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQF 76 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + I D + ++W ++ L + R K+LLN+ +VA Sbjct: 77 CRLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVA 135 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +T+ F + G AR P+ ++ G +STID+H +Q YY Sbjct: 136 QQTIPRGGVLTVDPIGEGETMSFRVAATGLNARLPQNIVNLLAGAQQSTIDAHAVQPYYT 195 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA +++ + VV +A Sbjct: 196 RLLADACGLKVTLAADGEAMVVQAA 220 >gi|90425721|ref|YP_534091.1| hypothetical protein RPC_4248 [Rhodopseudomonas palustris BisB18] gi|90107735|gb|ABD89772.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 219 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 16 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKQEDREFALDLIRKSARTASARLQF 75 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + + D + ++ W +I L + + K+LLN+ ++A Sbjct: 76 CRLAFGAAGSAGAQIDLGDAQNMARGHLEDD-KTKIEWNLPRILLPKNKVKLLLNMLVIA 134 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +T+ + F + +G AR ++ G +ID+H +Q YY Sbjct: 135 QQTIPRGGVLTVEAVGEGDAMGFRVAASGLNARTQTNIVDMLSGAHAGSIDAHAVQPYYT 194 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA + + VV ++ Sbjct: 195 RLLAQACGFSVSLAPAGEAVVVTAS 219 >gi|91978143|ref|YP_570802.1| hypothetical protein RPD_3679 [Rhodopseudomonas palustris BisB5] gi|91684599|gb|ABE40901.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 217 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 119/202 (58%), Gaps = 4/202 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 14 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQF 73 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + + D++ +++W ++ L++ R K+LLN+ ++A Sbjct: 74 CRLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKIAWNLPRLLLAKNRVKLLLNMLIIA 132 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +TI + F + G AR P+ +++ G+ I+SH +Q YY Sbjct: 133 QQTIPRGGTLTIDPVGEGDNLSFRVIAAGLNARMPQNIAEMLSGSHAGPIESHGVQPYYT 192 Query: 187 ILLAHENKIRLLPEIIDDHNVV 208 LLA + + D VV Sbjct: 193 RLLAQACGLAVTLAPEGDTMVV 214 >gi|86751029|ref|YP_487525.1| hypothetical protein RPB_3921 [Rhodopseudomonas palustris HaA2] gi|86574057|gb|ABD08614.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 217 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 4/202 (1%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ +++ + LIR S+ +A RL+F Sbjct: 14 DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQF 73 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + + D++ +++W ++ L++ R K+LLN+ ++A Sbjct: 74 CRLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKLAWNLPRVLLAKNRVKLLLNMLIIA 132 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +T+ + F + G AR P+ + ++G+ ++SH +Q YY Sbjct: 133 QQTIPRGGTLTVDPVGEGDNLSFRVVAAGLNARMPQNIVEKLNGSHAGPVESHGVQPYYT 192 Query: 187 ILLAHENKIRLLPEIIDDHNVV 208 LLA + + + VV Sbjct: 193 RLLAESCGLAVTLAPEGEAMVV 214 >gi|319406805|emb|CBI80438.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 212 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 77/202 (38%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 + +L S DL ALLCSRICHD+ISPIGAI N++EL DE +++V+QL+RLS +A R Sbjct: 2 TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G V+ I EQV + ++ +++ + W L ++ K+LLNL Sbjct: 62 LQFARLAFGAIGGVEDKIDTIFAEQVSQQYMK-EEKAILKWQAASFLLPKDEIKLLLNLL 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182 ++A+A++ +GG++ + + + ++ +F I G + R P F ++ +G E ID+ Q Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFDIRGKILRVPSHFIELYNGKMPEELIDARIAQ 180 Query: 183 FYYVILLAHENKIRLLPEIIDD 204 FYY ILLA ++++ D Sbjct: 181 FYYTILLAEITAMKIIIHETSD 202 >gi|92118838|ref|YP_578567.1| hypothetical protein Nham_3377 [Nitrobacter hamburgensis X14] gi|91801732|gb|ABE64107.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 215 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66 +++L ALLCSR+CHD+ISP+GAI N LE+LD+ + + LIR S+ +A RL+F Sbjct: 12 DTLELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSAKTASARLQF 71 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG GS + I LGD + + + D ++ ++W ++ L + R K+LLNL ++A Sbjct: 72 CRLAFGAAGSAGAQIDLGDAQNMAKGHFE-DGKITIAWNLPRLLLPKNRVKLLLNLLVIA 130 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++PRGG +T+ F + G AR + ++ +D+H +Q YY Sbjct: 131 QQTIPRGGVLTVDPLGEGEAMGFQITAAGLNARLSQTTADLLASGPAGAVDAHAVQPYYT 190 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211 LLA I + D VV +A Sbjct: 191 RLLAEACGIGISL-AADGEKVVATA 214 >gi|260462504|ref|ZP_05810711.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259031700|gb|EEW32969.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 209 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A RL+F Sbjct: 5 FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG GS +I GD E V F+ +++ ++ W G + L + + K+LLNL +VA Sbjct: 65 ARIAFGAAGSAGMMIDTGDAEAVAIAFLK-NEKPELVWNGIRALLPKNKVKLLLNLLLVA 123 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185 +A++PRGGK+ +++++ + E FSL +G + R P KF ++ G E ID+H +Q YY Sbjct: 124 NAAIPRGGKLVVTLENLETEPRFSLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211 +LLA E + + + V+ +A Sbjct: 184 TLLLAREAAMTISIHATAEEIVLSAA 209 >gi|158422707|ref|YP_001523999.1| hypothetical protein AZC_1083 [Azorhizobium caulinodans ORS 571] gi|158329596|dbj|BAF87081.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 221 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 6/215 (2%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58 + +S +DL ALLCSR+CHD+ISP+GAI N LE+L++ + + + LI S+ Sbjct: 7 GSTVTLKVSPLDLAALLCSRVCHDVISPVGAIVNGLEVLEDEDAPDMREVALDLISKSAR 66 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 A RL+F RLAFG GS + I LGD E V+ + D R ++ W + L + R K+ Sbjct: 67 QASARLQFTRLAFGAAGSARATIDLGDAENVVRGMME-DARTKIDWMLPRELLPKNRVKL 125 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTID 177 LLNL ++A ++PRGG + ++ + + FS+ G AR P+ ++DG E +D Sbjct: 126 LLNLMLLAGMTVPRGGVIQVAAVGAAPDMGFSIASTGVSARIPQAILPLLDGVPPEGGLD 185 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 +H +Q +Y LLA + + +L D V LSAL Sbjct: 186 AHAVQPFYAGLLAQDCGL-VLGFSQDGETVTLSAL 219 >gi|296444665|ref|ZP_06886629.1| Protein of unknown function DUF2328 [Methylosinus trichosporium OB3b] gi|296257933|gb|EFH04996.1| Protein of unknown function DUF2328 [Methylosinus trichosporium OB3b] Length = 228 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 120/208 (57%), Gaps = 5/208 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63 F L MDL ALL SR+CHD+ISP+GAI N LE+L+ + + + LI+ S+ A R Sbjct: 4 FALDPMDLAALLSSRVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSAAEASSR 63 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG GS + I GD E V +A D+R ++ W+ ++ +S+ + K+LLNL Sbjct: 64 LQFCRLAFGAAGSKGAAIDTGDAEHVTRQLLA-DERTRLEWSVPRVLMSKNKVKLLLNLC 122 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182 ++A A++PRGG +++S +++ F++ G AR ++ G E +D+ IQ Sbjct: 123 LIADATIPRGGVISVSSAGGEDDLSFTIVAKGTNARVAAAIPALLAGTPEDGAVDARAIQ 182 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLS 210 YY L+A + + + I + +++ Sbjct: 183 AYYAGLVAEASGLEVEISTIPEQVTIIA 210 >gi|304394503|ref|ZP_07376424.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303293413|gb|EFL87792.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 211 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 126/206 (61%), Gaps = 5/206 (2%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLK 65 LS +DL AL+ SR+CHDIISP+GA+ N LE+L+E ++ M+LI S+ +A +LK Sbjct: 7 LSPLDLAALIASRVCHDIISPVGALANGLEVLEEEDSEEMKAFAMELIHKSAKTASAKLK 66 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG +GS S I G+ E+++ ++ + + + +W G + + + R K+LLNL ++ Sbjct: 67 FCRIAFGASGSAGSSIDTGEAEEMVGLYMNSE-KAEYTWEGSRSFVPKNRVKLLLNLLLI 125 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 + ++PRGG V + + F+L+ G AR P F +++G VE I +H +Q YY Sbjct: 126 SLGAIPRGGNVGVQIHGEGETATFTLRCVGPKARVPADFVDMMNGTVEGDITAHAVQPYY 185 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211 ++LA + + L +++ +VV +A Sbjct: 186 TVMLAQDCGLELGA-VLEGEDVVFTA 210 >gi|254473075|ref|ZP_05086473.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211957796|gb|EEA92998.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 218 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 125/203 (61%), Gaps = 4/203 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRL 64 LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED M LIR S+ A +L Sbjct: 6 ELSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGNEDMADFAMDLIRKSARQASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RLAFG GS + I LGD ++V +++ +++ + WT ++ L + + K++LNL + Sbjct: 66 QFARLAFGAAGSAGASIDLGDAQEVAVGYMS-NEKANLEWTMPRLLLPKNQVKLILNLLL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 + + +PRGG +TIS++ ++ F LK G AR P+ ++I+ G +D+H +Q Sbjct: 125 LMNQCVPRGGTITISMEGDESAPNFLLKAEGTNARIPQVVSEILSGQEPERVDAHTVQPI 184 Query: 185 YVILLAHENKIRLLPEIIDDHNV 207 Y +LLA E + + E D + Sbjct: 185 YAVLLAGEAGLNIELEKDGDAVI 207 >gi|307944607|ref|ZP_07659947.1| putative Signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307772356|gb|EFO31577.1| putative Signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 214 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64 L S+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED M LIR S+ A +L Sbjct: 6 ELPSLDLSALVASRVCHDIISPVGAITNGLEVLDEDGAEDMRDFAMDLIRKSARQASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RLAFG GS + I LGD + V F+ +++ + W + + + K+LLNL + Sbjct: 66 QFARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLDWQVTRHLMPKNYVKLLLNLIL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 +A+ +PRGG + ++++ + F L +G R P + ++G +D+H +Q Sbjct: 125 IANQCVPRGGTIKVTMEGEPSSPSFELVASGQNPRIPIGMKETLEGTEPERVDAHSVQPI 184 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211 Y LLA E ++ ++ + ++ Sbjct: 185 YTFLLAKECGSAVVINKEEEQVRITTS 211 >gi|118588302|ref|ZP_01545711.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614] gi|118439008|gb|EAV45640.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614] Length = 214 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 5/211 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL 64 LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G + + M LIR S+ A +L Sbjct: 6 ELSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F RLAFG GS + I LGD + V F+ +++ ++W + + + K+LLNL + Sbjct: 66 QFARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLNWQLSRHLMPKNYVKLLLNLIL 124 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 +A+ +PRGG++ + ++ F+L+ +G R P + + G +D+H +Q Sbjct: 125 IANQCVPRGGEIKVEMEGDPQSPAFTLQASGLNPRIPLGMKETLGGEEPERVDAHSVQPI 184 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Y +LLA E + L + + V ++ALL + Sbjct: 185 YTLLLARECGMVLTIDKQ-EELVKITALLAE 214 >gi|154252620|ref|YP_001413444.1| hypothetical protein Plav_2173 [Parvibaculum lavamentivorans DS-1] gi|154156570|gb|ABS63787.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 222 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 117/212 (55%), Gaps = 5/212 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M + ++S+++L AL+CSR+CHD+ISP+GAI N LE+L D+ ++ M+LI S+ Sbjct: 1 MDMSETNDVSALELAALMCSRVCHDVISPVGAIINGLEVLADDDDPEMKAHAMELITKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 A +L+F RL FG GS + + L D + V E + + +R ++W + ++ K Sbjct: 61 AQASAKLQFARLCFGAAGSASAELDLQDAKAVAEGLM-MGERAALTWNAPAATIGKDYVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-I 176 +LLN+ ++ A++PRGG+V +SV + ++ G AR PE+ + + G + Sbjct: 120 LLLNMILIGMAAIPRGGEVAVSVDGELAKPTLRIRSTGQAARIPEETAKFLGGRSPDRFL 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 D+ Q Y+ L+A + + + + V+ Sbjct: 180 DARAAQPYFTGLVARSLGLSIDARMDGEAFVI 211 >gi|254500736|ref|ZP_05112887.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11] gi|222436807|gb|EEE43486.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11] Length = 205 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 5/204 (2%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMR 68 MDL AL+ SR+CHDIISP+GAI N LE+LDE G + + M LIR S+ A +L+F R Sbjct: 1 MDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKLQFAR 60 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 LAFG GS + I LGD + V F+ +++ ++W E+ + + K+LLNL ++A+ Sbjct: 61 LAFGAAGSAGAEIDLGDAQVVATGFME-NEKSNLNWQLERHLMPKNFVKLLLNLILIANQ 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 +PRGG++ + + + F+L G R P + + G +D+H +Q Y +L Sbjct: 120 CVPRGGEIKVEMSGTPQSPSFTLNAAGLNPRIPLGMKETLSGEEPERVDAHSVQPIYSLL 179 Query: 189 LAHENKIRLLPEIIDDHNVVLSAL 212 LA E + L + D+ V ++AL Sbjct: 180 LARECGMELTIDK-DEDCVKITAL 202 >gi|218529783|ref|YP_002420599.1| hypothetical protein Mchl_1808 [Methylobacterium chloromethanicum CM4] gi|218522086|gb|ACK82671.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 246 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 5/218 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+ N L ++DL ALLCSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ Sbjct: 1 MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V + A D++ Q++W+ + + + K Sbjct: 61 RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176 +LLNL ++A +++PRGG + ++V + F L+ G+ AR P ++ G E T+ Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D+H I +Y L+A + + I D V + E Sbjct: 180 DAHGILPFYAGLVARAAAMDVRFTIEGDEVTVTATPTE 217 >gi|163850955|ref|YP_001638998.1| hypothetical protein Mext_1528 [Methylobacterium extorquens PA1] gi|254560648|ref|YP_003067743.1| hypothetical protein METDI2193 [Methylobacterium extorquens DM4] gi|163662560|gb|ABY29927.1| conserved hypothetical protein [Methylobacterium extorquens PA1] gi|254267926|emb|CAX23794.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 246 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 5/218 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+ N L ++DL ALLCSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ Sbjct: 1 MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V + A D++ Q++W+ + + + K Sbjct: 61 RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176 +LLNL ++A +++PRGG + ++V + F L+ G+ AR P ++ G E T+ Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D+H I +Y L+A + + I D V + E Sbjct: 180 DAHGILPFYAGLVARAAAMDVRFTIEGDEVTVTATPTE 217 >gi|240138087|ref|YP_002962559.1| hypothetical protein MexAM1_META1p1420 [Methylobacterium extorquens AM1] gi|240008056|gb|ACS39282.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 246 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 125/218 (57%), Gaps = 5/218 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+ L ++DL ALLCSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ Sbjct: 1 MSGTSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V + A D++ Q++W+ + + + K Sbjct: 61 RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176 +LLNL ++A +++PRGG + ++V + F L+ G+ AR P ++ G E T+ Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D+H I +Y L+A + + I D V + E Sbjct: 180 DAHGILPFYAGLVARAAAMDVRFTIEGDEVTVTATPTE 217 >gi|90419034|ref|ZP_01226945.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337114|gb|EAS50819.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 208 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 112/192 (58%), Gaps = 3/192 (1%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 ++CHDIISP+ I + LELLD++ + E M+L+R S SA+ +L+F R+AFG GS + Sbjct: 19 KLCHDIISPVFGIQSGLELLDDMPNDPESMELVRHSLKSAVAKLQFARIAFGAAGSQTAT 78 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140 I L D + V ++ ++ + W GE +++ KI+LNL ++A+AS+ RGG++ + + Sbjct: 79 IDLNDAKTVANGYM-NHEKAAIVWEGEPGYVAKNFVKIILNLIVLANASISRGGEIKVVI 137 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLP 199 + S + +++ G+ R + +++G+V +D+ IQ YY + LA E+ + + Sbjct: 138 E-SIDPPRATVRATGDRIRIQPRLMALLNGDVAQEAMDAQTIQPYYTLFLAQESGLTVAH 196 Query: 200 EIIDDHNVVLSA 211 E + + A Sbjct: 197 EKTEGSVLFTVA 208 >gi|298292567|ref|YP_003694506.1| hypothetical protein Snov_2592 [Starkeya novella DSM 506] gi|296929078|gb|ADH89887.1| Protein of unknown function DUF2328 [Starkeya novella DSM 506] Length = 215 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 6/197 (3%) Query: 19 CSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+LD+ ++ + LI S+ A RL+F RLAFG G Sbjct: 17 CSRVCHDVISPVGAIVNGLEVLDDEDDPSMKAFALDLIAKSAKQASARLQFARLAFGAAG 76 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I GD E+V FI D R V W ++ + + K+LLNL +VA +++PRGGK Sbjct: 77 SAGAQIDTGDAEKVARGFIEDD-RTSVEWHVPRVLSPKNKVKLLLNLMVVATSTIPRGGK 135 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHEN 193 + + +E F L G+ +R P ++ G +D+H IQ +Y LLA Sbjct: 136 ILVIATGEGDEGGFRLTTEGSHSRIPPHLIALLAGEAPEGGALDAHAIQPHYTGLLARAA 195 Query: 194 KIRLLPEIIDDHNVVLS 210 RL + + + Sbjct: 196 GYRLSLGHAGESVEIAA 212 >gi|188580968|ref|YP_001924413.1| hypothetical protein Mpop_1715 [Methylobacterium populi BJ001] gi|179344466|gb|ACB79878.1| conserved hypothetical protein [Methylobacterium populi BJ001] Length = 250 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 5/218 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57 M+ L ++DL ALLCSR+CHD+ISPIGAI N LE+L D+ + + ++LIR S+ Sbjct: 5 MSGTTSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 64 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V A D++ Q++W+ + + + K Sbjct: 65 RTASARVQFARIAFGAAGSAGASIDLADAEKVSRAMFA-DEKTQITWSAPQALFPKNKVK 123 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-I 176 +LLNL ++A +++PRGG + ++V + L+ G+ AR P ++ G E + Sbjct: 124 LLLNLVVIASSAIPRGGVIDVAVTGGGDAPRLVLRAKGSHARIPPHVEALIAGTPEGGSV 183 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D+H I +Y L+A + + I D V + E Sbjct: 184 DAHGILPFYAGLVARAAAMDVRFAIEGDEVTVTATPTE 221 >gi|254708257|ref|ZP_05170085.1| hypothetical protein BpinM_15194 [Brucella pinnipedialis M163/99/10] gi|261315758|ref|ZP_05954955.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261304784|gb|EEY08281.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 192 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 57/140 (40%), Positives = 96/140 (68%), Gaps = 1/140 (0%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63 ++ LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A R Sbjct: 2 SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F R+AFG GS I GD + V ++ +++ + +W G ++ L + + K+LLN+ Sbjct: 62 LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120 Query: 124 MVAHASLPRGGKVTISVQDS 143 ++ + ++PRGG + + ++ + Sbjct: 121 LIGNGAIPRGGSLAVRLEGA 140 >gi|114569208|ref|YP_755888.1| hypothetical protein Mmar10_0657 [Maricaulis maris MCS10] gi|114339670|gb|ABI64950.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 227 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 6/218 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57 M ++ L + L ALLC+R+CHD++SP+ A+ +L + D+ + ++ M+L+R SS Sbjct: 5 MQDDLPAELPADQLAALLCARLCHDLVSPVSALGAALSVFDDPDSADMHEDAMELVRESS 64 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 A +L+F RLAFG GS ++ +++++ E + + ++ W E L ++ A+ Sbjct: 65 RQAQAKLEFCRLAFGAGGSAPGIMDSRELQRLTEAMFS-SVKPEIVWKVESAGLEKQAAR 123 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTI 176 +LLN+ ++ + PRGG VTI ++ + G AR + ++ E+ Sbjct: 124 LLLNMCLLGVDAAPRGGTVTIEGAETGGGARLRVISEGPRARLEPGTARALEALAPENGY 183 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D IQ YY L+A N R+ + +++ V AL++ Sbjct: 184 DGRSIQPYYTGLIARSNGGRVSAQA-NENRVEFIALVK 220 >gi|260433681|ref|ZP_05787652.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417509|gb|EEX10768.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 8/202 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLK 65 ++++L L+ SRICHD+ISPIGAI N LELL+ G + M+LI S SA R++ Sbjct: 1 MGDTNVNLAELIGSRICHDLISPIGAITNGLELLEMVGGTQGPEMELITGSVGSAGARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG D +G ++ ++ D + RV+V W + + R + K+ M Sbjct: 61 FFRVAFGAA--SDQPLGRSEVTDLLRD-VERAGRVRVHWNVTEA-MPRNQIKLAFLALMC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +++P GG+V I K + + P+ + + G + + +QF Sbjct: 117 CESAMPMGGEVKIDSVGDKWTVTGT---ADRMNVDPDLWKGLPTGTFANKVTPAQVQFAL 173 Query: 186 VILLAHENKIRLLPEIIDDHNV 207 + A R+L E V Sbjct: 174 LPQTAAAQGRRVLAETGATRVV 195 >gi|46203314|ref|ZP_00051697.2| hypothetical protein Magn03005939 [Magnetospirillum magnetotacticum MS-1] Length = 246 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 5/218 (2%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57 M+ L ++DL ALLCSR+CHD+ISPIGAI N LE+L++ + + ++LIR S+ Sbjct: 1 MSGTSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDNDPSMREFALELIRKSA 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 +A R++F R+AFG GS + I L D E+V A D++ Q++W+ + + + K Sbjct: 61 RTASARVQFARIAFGAAGSAGASIDLADAEKVSRAMFA-DEKTQIAWSAPQALFPKNKVK 119 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176 +LLNL ++A ++PRGG + ++V F L+ G+ AR P ++ G E T+ Sbjct: 120 LLLNLVVIASGAIPRGGLIDVAVTGGGEAPRFVLRAKGSHARIPPHVEALIAGTPEGGTV 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D+H I +Y L++ + + I D V + E Sbjct: 180 DAHGILPFYAGLVSRAAAMDVRFTIEGDEVTVTATPTE 217 >gi|163736427|ref|ZP_02143846.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis BS107] gi|161390297|gb|EDQ14647.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis BS107] Length = 198 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 10/204 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 ++ + +L AL+ SRICHD+ISPIGAI+N LELL G + ++LI S +A R++ Sbjct: 1 MSVDNANLAALIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG D I ++ V+ED I R++ W ++ SR ++ + Sbjct: 61 FFRIAFGAA--SDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184 LP GG V I D K +++ G+ + + ++ G +T+ +QF Sbjct: 117 LETGLPYGGTVKILCADGK----WTVIGEGSKLNIDDDLWARVSGGTSSTTVTPALVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + A + + E + V Sbjct: 173 MLPEAAKDLGRTVRVEQTLERVTV 196 >gi|149187048|ref|ZP_01865355.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21] gi|148829337|gb|EDL47781.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21] Length = 219 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 111/210 (52%), Gaps = 5/210 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 S+DL A+LCSR+CHD++SP+GA++N LELL D+ + V+ L+ S+ ++ +LKF Sbjct: 5 KSIDLAAMLCSRLCHDMLSPVGALNNGLELLAMEDDPEMRKNVIALLEQSATTSTNKLKF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG G + + + +I+ +A ++++ W E +L++ K+LLN +A Sbjct: 65 FRLAFGAAGGFGDRVDVQEPRALIDALVADKDKIEIHWAIEAANLAKPAVKVLLNFAQIA 124 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYY 185 +L RGG + I + ++ G F + + +DG++ S + S + Sbjct: 125 IDALVRGGTLDIGAEVRDGNCEIVVRATGTKVAFDDNIGKAIDGSLPHSELSSRTAAAHM 184 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + LLA + L D +VL A+L + Sbjct: 185 IHLLAEGSGGGLQYART-DETLVLGAVLPE 213 >gi|170750431|ref|YP_001756691.1| hypothetical protein Mrad2831_4036 [Methylobacterium radiotolerans JCM 2831] gi|170656953|gb|ACB26008.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 236 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 5/194 (2%) Query: 19 CSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L++ + ++LI S+ A RLKF R+AFG G Sbjct: 21 CSRVCHDVISPVGAIVNGLEVLEDDQDESMRTFALELIGKSARQASARLKFARIAFGAAG 80 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I L D E V + A D + +++W+ + + + K+LLNL M+A +++PRGG Sbjct: 81 SAGASIDLADAESVAKGMFADD-KTKLTWSAPQALFPKNKVKLLLNLVMIATSAIPRGGV 139 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENK 194 + + V LK G+ AR P +++ G E T+D+H I +Y L+A Sbjct: 140 IDVVVSGDGEAPTLVLKAKGSHARIPPHVEELMAGRPESGTVDAHGILPFYAGLVARAAA 199 Query: 195 IRLLPEIIDDHNVV 208 + + I D + Sbjct: 200 MDVRFAIEGDEVTI 213 >gi|254477150|ref|ZP_05090536.1| conserved hypothetical protein [Ruegeria sp. R11] gi|214031393|gb|EEB72228.1| conserved hypothetical protein [Ruegeria sp. R11] Length = 198 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 10/204 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 ++ + +L AL+ SRICHD+ISPIGAI+N LELL G + ++LI S +A R++ Sbjct: 1 MSVDNANLAALVGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG + I ++ V+ED I+ R++ WT ++ +R ++ L + Sbjct: 61 FFRIAFGAA--SEQQISRAEVVSVLED-ISKGGRLKYQWTPQEPA-TRAEVRLALLAGLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184 LP GG V I D K +++ G+ E + ++ G+ +T+ +QF Sbjct: 117 LETGLPYGGNVNILCADGK----WTVIGEGSKLNIDDELWARVSGGSSSATVTPALVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + A + + E + + Sbjct: 173 MLPEAARDLGRTVRVEQTLERVTI 196 >gi|182678005|ref|YP_001832151.1| hypothetical protein Bind_1019 [Beijerinckia indica subsp. indica ATCC 9039] gi|182633888|gb|ACB94662.1| conserved hypothetical protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 222 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 127/212 (59%), Gaps = 7/212 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIR 63 F+L MDL ALLCSR+CHD+ISP+GAI N LE+L+E + + LI+ S+ +A R Sbjct: 4 FSLDPMDLAALLCSRVCHDVISPVGAIVNGLEILEEEKEESQRELALDLIKKSAETASAR 63 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG GS +LI GD E+V+ A + R + W ++ +++++ K++LNL Sbjct: 64 LQFCRLAFGAAGSAGALIDTGDAERVMRGLFA-EGRSTLEWHAPRVLMAKDKVKLILNLC 122 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182 ++A A+LPRGG V+++++ + + + G AR + ++ G + ++D+H IQ Sbjct: 123 LIAMAALPRGGVVSVTIEGGETPSHIKIDAQGTNARLAQHVPSLLAGAPDTGSVDAHGIQ 182 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +Y L+A + L +II + N+V A Sbjct: 183 AFYTGLVAKSAGMTL--DIIAEPNLVQIAATP 212 >gi|300022395|ref|YP_003755006.1| hypothetical protein Hden_0868 [Hyphomicrobium denitrificans ATCC 51888] gi|299524216|gb|ADJ22685.1| Protein of unknown function DUF2328 [Hyphomicrobium denitrificans ATCC 51888] Length = 216 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 7/219 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57 M++ + ++L AL+ SRICHDII+P+GAI N LE+LDE + + +IR + Sbjct: 1 MSQRAPVPPTDLELAALISSRICHDIINPVGAIFNGLEILDEDDDAQAKSYALNVIRNVT 60 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGEKIDLSRERA 116 A RL+F R AFG GS ++I L E++ F+ + + ++ W G +++++ Sbjct: 61 EQASARLEFARFAFGAAGSAGAMIDLTTAEKISRGFVKITQGKHKLIWRGAPGFVAKDKV 120 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 K+LLNL + +LPRGG++ +++ S + F ++ G AR P+ T V GN + Sbjct: 121 KLLLNLIASSVTALPRGGEIDVAIAGSFEQPSFLIRCKGTSARPPQYLTDFVAGNP-LAL 179 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D+ IQ YY +A +RL EI+ D +L + Sbjct: 180 DAMSIQAYYTWRIAPTAGMRL--EILKDGADILLVAKPE 216 >gi|85707642|ref|ZP_01038708.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1] gi|85689176|gb|EAQ29179.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1] Length = 217 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 5/210 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66 S DL ALLCSR+CHD++SP+GA+ N LELL + + + ++L+ S+ + +LKF Sbjct: 3 SQTDLAALLCSRLCHDMLSPVGALSNGLELLADETDAEMRERCIELLEQSAKISTDKLKF 62 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG G + + + ++VI A KRV+V+W L + K++LNL +A Sbjct: 63 FRLAFGAAGGFGENVPVEEAQEVIGALAADAKRVEVNWALADSTLPKPAVKVMLNLAQIA 122 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-IDSHDIQFYY 185 +L RGG + I + + + G F E Q + G + + I S + Sbjct: 123 LDALVRGGTLDIGAEKREGNIEIVARAAGQRIAFDETIGQALQGELADSDISSRTAAAHM 182 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + L+A E L + DD +VL A+L + Sbjct: 183 IALVAGEMGGGLQYAVSDDA-LVLGAVLPE 211 >gi|86138882|ref|ZP_01057454.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193] gi|85824529|gb|EAQ44732.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193] Length = 198 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 10/204 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 + + +L AL+ SRICHD+ISP+GAI+N LELL G + ++LI S ++A R++ Sbjct: 1 MAVDTANLAALIGSRICHDLISPVGAINNGLELLAMSGAMAGPELELISDSVLNANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG G D +G +I V++D I R++ W + SR ++ + Sbjct: 61 FFRIAFGAAG--DQQMGRAEIVSVLDD-IGKAGRLKYQWNLAEGC-SRSEVRMAFLAALC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFY 184 +LP GG +++S D K +++ G VD + +T+ +QF Sbjct: 117 LETALPYGGLISVSCTDGK----WTVVGEGRKISIEAPLWGHVDTSDTSATLTPAQVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + + A E + ++ + ++ V Sbjct: 173 MLAVAAQEAERQVSFDHSEEKVTV 196 >gi|154247415|ref|YP_001418373.1| hypothetical protein Xaut_3487 [Xanthobacter autotrophicus Py2] gi|154161500|gb|ABS68716.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 226 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 5/197 (2%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAI 61 + +S++DL ALLCSR+CHD+ISP+GAI N LE+L++ + D + LI S+ A Sbjct: 16 VTLAVSALDLGALLCSRVCHDVISPVGAIVNGLEVLEDEDAADMRDVALDLIAKSARQAS 75 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 RL+F RLAFG GS + + LGD EQV+ I D R +V W+ + L + R K+LLN Sbjct: 76 ARLQFTRLAFGAAGSAGARLDLGDAEQVVRPVIE-DGRTRVEWSLPRELLPKNRVKLLLN 134 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHD 180 L ++A ++PRGG + IS + F L G AR PE +VDG E +D+H Sbjct: 135 LVLLAGTTIPRGGVIRISAVGEGDATGFVLASTGEKARIPEGLQALVDGVAPEGGLDAHS 194 Query: 181 IQFYYVILLAHENKIRL 197 +Q +Y +LA + I + Sbjct: 195 VQPFYAGMLARDCAIAI 211 >gi|87201062|ref|YP_498319.1| hypothetical protein Saro_3050 [Novosphingobium aromaticivorans DSM 12444] gi|87136743|gb|ABD27485.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 213 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 5/212 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 +S++DL +LLCSR+CHD++SP+GA+ N LELL + + +L+ S+ ++ + Sbjct: 1 MTVSALDLASLLCSRLCHDMLSPVGALSNGLELLADEKDPEMRQRCFELLEQSAKASADK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G + + + +++ + + RV V+W L + K LLNL Sbjct: 61 LKFFRLAFGAAGGFGEQVPVNEARPLVDALVGANGRVAVNWMFGVDSLPKPAVKTLLNLA 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182 ++ +L RGG + + + ++ G F Q ++G + S + S Sbjct: 121 LIGLDALVRGGTLDVGAEVRDGVTEIVVRAAGQRIAFDPAIGQALEGALPTSELSSRTAP 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V LA + I D ++VL A+L Sbjct: 181 AAMVHQLAAAVGGGVQVHIAPD-SLVLGAVLP 211 >gi|254464507|ref|ZP_05077918.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I] gi|206685415|gb|EDZ45897.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I] Length = 198 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 10/196 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 + + +L AL+ SRICHD+ISP+GAI+N LELL G + ++LI S +A R++ Sbjct: 1 MGVDNANLAALVGSRICHDLISPVGAINNGLELLGMAGSMSGPELELISDSVANANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG G D + +I ++ED I+ R++ W+ + +R A++ L + Sbjct: 61 FFRVAFGAAG--DQQMARAEIVSLLED-ISKGGRIKYQWSPLEGC-TRSEARLSLLAALC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFY 184 +LP GG V + D K +++ G+ E + ++ G + I +QF Sbjct: 117 LETALPYGGTVKVFCADGK----WTVMGEGSKLNVDDELWARVSGGTSNAEITPALVQFA 172 Query: 185 YVILLAHENKIRLLPE 200 + A E + E Sbjct: 173 LLPEAAKEANRTVRLE 188 >gi|254512237|ref|ZP_05124304.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221535948|gb|EEE38936.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 204 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMS 59 M + + S ++L L+ SRICHD+ISPIGAI N LELL+ VG + M+LI S S Sbjct: 1 MQQEVRMGASDVNLAELIGSRICHDLISPIGAITNGLELLEMVGAVKGPEMELISGSVGS 60 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 A R++F R+AFG D +G ++ ++++D + RV++ WT + + R + K+ Sbjct: 61 AGARIRFFRVAFGAA--SDQPLGRAEVVELLKD-VERAGRVRIVWTLTEP-VPRNQVKLA 116 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 M +++P GG+V I+V+ + L+ + + +G + Sbjct: 117 FLALMCCESAMPFGGEVEITVRSDAWTVTG---MADKLSLDSGLWKGVANGCFAEKVSPA 173 Query: 180 DIQFYYVILLAHENKIRLLPEIID 203 +QF + A R+ E Sbjct: 174 QVQFALLPEAAAPMGRRVAVETTA 197 >gi|294011925|ref|YP_003545385.1| hypothetical protein SJA_C1-19390 [Sphingobium japonicum UT26S] gi|292675255|dbj|BAI96773.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 217 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64 + S+D +LLCSR+CHD++SP+GA++N LEL+ + + + L+ S+ ++ +L Sbjct: 4 PIDSIDFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSARTSANKL 63 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 KF RLAFG G + + IE A RV++ W E L + K+LLNL + Sbjct: 64 KFFRLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLEKLPVKVLLNLAL 123 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQF 183 +A +L RGG++ I + ++ G + G + S Sbjct: 124 IAGDALVRGGQLDIGAEKRPGVTEIVVRAEGPKLVLDPDLRAALAGTLPPEGLASRTSAA 183 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + ++ A + + Sbjct: 184 WMVRTLVTSVGGEIALSPAGEPILLFGASIPE 215 >gi|56551648|ref|YP_162487.1| hypothetical protein ZMO0752 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761225|ref|ZP_04759313.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752764|ref|YP_003225657.1| hypothetical protein Za10_0524 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543222|gb|AAV89376.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374132|gb|EER63629.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552127|gb|ACV75073.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 208 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 +++++L +LLCSR+CHD++SP+ A++N +ELL + + + L+ S+ + + Sbjct: 1 MTMTAINLASLLCSRLCHDLLSPVSAMNNGIELLADEHDPEMRARCIDLLSESAKVSASK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G + +I + I D R+Q+ W + + ++ +ILLNL Sbjct: 61 LKFFRLAFGQGGGFSESVDTEEIREAIAGLFGFDHRIQLGWMVDDPVMEKQAVRILLNLS 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGNVESTIDSHDIQ 182 ++A +L RGG + I + ++ ++ G F E+ ++ + + + Sbjct: 121 LIASDALVRGGNLDIGAEGNE----IVIRAEGRRLVFDEQIEATLLGKTPQDQLTPRLVA 176 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L E L + + ++ L Sbjct: 177 AWLIYTLIKERNGDLQIVRPEPNVLLFGINL 207 >gi|94497524|ref|ZP_01304093.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58] gi|94422941|gb|EAT07973.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58] Length = 221 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 6/220 (2%) Query: 1 MAKNICFN--LSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55 MA I S++ +LLCSR+CHD++SP+GA++N LEL+ + + + + L+ Sbjct: 1 MAIRIRMTNPTDSIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPAMRERCLDLLGD 60 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S+ ++ +LKF RLAFG G + + + IE A RV+V W ++ L + Sbjct: 61 SARTSANKLKFFRLAFGSAGGFGEAVPPHEAKVAIEGMFAGAGRVKVGWMVDEQMLGKLA 120 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-S 174 AKILLNL ++A +L RGG++ I + ++ G + G + Sbjct: 121 AKILLNLALIAGDALVRGGQLDIGAETRPGVTEIVVRAEGPKLVLDPDLRAALAGTLPIE 180 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + V L E +++ + ++ A++ Sbjct: 181 GLASRTAAAWMVRQLVMEAGGQIVLSPAGEPTLLFGAVIP 220 >gi|323137584|ref|ZP_08072661.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242] gi|322397210|gb|EFX99734.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242] Length = 231 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 5/185 (2%) Query: 21 RICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 R+CHD+ISP+GAI N LE+L+ + + + LI+ S+ A RL+F RLAFG GS Sbjct: 18 RVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSANEASARLQFCRLAFGAAGSK 77 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 + I GD E V +A D+R Q++W+ ++ +S+ + K+LLNL ++A A++PRGG ++ Sbjct: 78 GASIDTGDAELVTRQLLA-DERTQLNWSVPRVLMSKNKVKLLLNLCLLADAAIPRGGVIS 136 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIR 196 +S + F ++ G AR ++ G E ID+ IQ YY L+A + Sbjct: 137 VSSTGEDDRIAFRIEAKGTNARVAANIPALLAGEAEEGAIDARAIQPYYAGLVAKACGLD 196 Query: 197 LLPEI 201 + + Sbjct: 197 VTVNV 201 >gi|85373065|ref|YP_457127.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594] gi|84786148|gb|ABC62330.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594] Length = 214 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 5/210 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ L + LCSR+CHD++SP+GA+ N LELL ++ + ++L+ S+ ++ +LKF Sbjct: 5 DAVTLASQLCSRLCHDLLSPVGALSNGLELLAEEEDPEMRQRCLELLEASARTSANKLKF 64 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 RLAFG G +G+ + + VI+ KRV+V+W L + K++LN + Sbjct: 65 FRLAFGAAGGFGDRVGVDEPKAVIDALAQDAKRVEVNWALAVDALPKPAVKVMLNFAQMG 124 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYY 185 +L RGG + I + + ++ G F + + ++G++ + + Sbjct: 125 LDALVRGGTLDIGAERRDGASEIVVRATGAKVAFDDSIGRALEGSLPEDGLSGRTAAAHM 184 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + L+A ++ L + +D +VL A+L + Sbjct: 185 LALIAEQSGGNLQYQKSEDA-LVLGAMLPE 213 >gi|114705528|ref|ZP_01438431.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506] gi|114538374|gb|EAU41495.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506] Length = 230 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 109/191 (57%), Gaps = 4/191 (2%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S+ICHDIISP+ + + LELLD++ + E M L+R S +A+ +L+F R+A+G +GS + Sbjct: 40 SKICHDIISPVFGVQSGLELLDDMPDDAESMGLVRNSCKAAVGKLQFARMAYGASGSQTA 99 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 I L D + E ++A + + + WTGE + AK +LNL ++A +S+ RGG+VT++ Sbjct: 100 AIDLNDAKTTAEGYMAHE-KPDLVWTGEPGYAPKNFAKAVLNLIVLATSSISRGGEVTVA 158 Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLL 198 ++ + + ++ R +++G I++ IQ YY++ A+E + + Sbjct: 159 IE-ATDPGRATVTAKAQRIRIQPDTIALIEGTYNGEAINAQTIQPYYMLFCANEAGLSVS 217 Query: 199 PEIIDDHNVVL 209 +I++ V Sbjct: 218 -HVIEEGRVTF 227 >gi|217978669|ref|YP_002362816.1| hypothetical protein Msil_2530 [Methylocella silvestris BL2] gi|217504045|gb|ACK51454.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 227 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 11/196 (5%) Query: 19 CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 CSR+CHD+ISP+GAI N LE+L++ + E +QLIR S+ +A RL+F RLAFG G Sbjct: 16 CSRVCHDVISPVGAIVNGLEILEDEKDADMRAEALQLIRASAENASARLQFCRLAFGAAG 75 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 S + I GD E+V + D ++++ W ++ L + + K++LNL ++A A++PRGG Sbjct: 76 SAGASIDTGDAEKVARGLFS-DAKIKLDWRAPRVLLPKNKVKLILNLCLIASAAIPRGGV 134 Query: 136 VTISVQDSKNENI-------FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 +T+ + + + G A+ I+ G ID+H IQ YY L Sbjct: 135 ITVETITADAKEGALEPTIALRVIAQGTNAKLAPLTAAILAGAPAEAIDAHAIQPYYAAL 194 Query: 189 LAHENKIRLLPEIIDD 204 +A + L E D Sbjct: 195 VAQAAGMSLKAETGAD 210 >gi|332185707|ref|ZP_08387454.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17] gi|332014065|gb|EGI56123.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17] Length = 214 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 4/211 (1%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 +S +D +LLCSR+CHD++SP+GA++N LELL + + M+L+ S+ ++ + Sbjct: 1 MTVSPVDFASLLCSRLCHDLLSPVGALNNGLELLADETDPAMRARCMELLADSARASANK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G + + + + +E + ++R + W E L + +IL+NL Sbjct: 61 LKFFRLAFGAGGGFSDRVDMAEAKAAVEGLLVDNRRTTLGWLVEAPSLPKPAVRILVNLA 120 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVESTIDSHDIQ 182 ++A +L RGG + I + + ++++ G + + +++G + S Sbjct: 121 LIAVEALARGGTIDIGAEAGREAIEIAIRLEGPRILLDPEIRRTLMEGQGTEPLGSRTAP 180 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + + L E+ L + ++L A + Sbjct: 181 AFLIHTLTVEHGGMTLVTEPAPNTMILGAAI 211 >gi|307293089|ref|ZP_07572935.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum L-1] gi|306881155|gb|EFN12371.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum L-1] Length = 217 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64 + S++ +LLCSR+CHD++SP+GA++N LEL+ + + + L+ S+ ++ +L Sbjct: 4 STDSIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSAKTSANKL 63 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 KF RLAFG G + + IE A RV++ W E L + K+LLNL + Sbjct: 64 KFFRLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLDKLPVKVLLNLAL 123 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQF 183 +A +L RGG++ I + ++ G + G + + S Sbjct: 124 IAGDALVRGGQLDIGAEKRPGVTEIVVRAEGPKLVLDPDLRAALAGTLPSEGLASRTSAA 183 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + + ++ A + Sbjct: 184 WMVRTLVTSTGGEIALSPAGEPVLLFGASIPD 215 >gi|99081047|ref|YP_613201.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040] gi|99037327|gb|ABF63939.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040] Length = 198 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 10/204 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65 ++ + +L AL+ SRICHD+ISP+GAI+N LELL E ++LI S +A R++ Sbjct: 1 MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG G + +G +I V+ D ++ R++ +W+ + R+ ++ + Sbjct: 61 FFRVAFGAAG--EQELGRMEIMSVLSD-VSKGGRIKYNWSSQDSAARRD-VRMAFLAGLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQFY 184 ++LP GG V I ++ + +++ G E ++ +V + I +QF Sbjct: 117 LESALPYGGTVQIL----RSTDGWTVTGEGRKINLDETLWSGLVADTTPAEITPALVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + A E L + + Sbjct: 173 LLPAAAKEAGYTLAFNQTAEKISI 196 >gi|84516141|ref|ZP_01003501.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53] gi|84509837|gb|EAQ06294.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53] Length = 196 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 13/201 (6%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLA 70 DL L+ SRICHD+ISPIGAI N LELL G M LI S +A R++F R+A Sbjct: 3 PDLATLVGSRICHDLISPIGAIGNGLELLALTDGNPGAEMNLIADSVQNANARIRFYRIA 62 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 +G S + ++G D+ I +A R W + D R + L L A++ Sbjct: 63 YGAA-STEQMLGSADVLSFIS-VLARGGRFTYFWQVAE-DRPRREVRCALLLLQCFEAAM 119 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVI 187 P GG + +SV D ++ RF P + ++ G+ T + +QF + Sbjct: 120 PVGGDIHVSVIDG------RWVLSAECLRFNIDPCLWDRLATGDTAFTYSAAQVQFALLP 173 Query: 188 LLAHENKIRLLPEIIDDHNVV 208 + E L ++ D VV Sbjct: 174 CMLQEAGRALKVKMSSDRIVV 194 >gi|259418910|ref|ZP_05742827.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259345132|gb|EEW56986.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 198 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 10/204 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65 ++ + +L AL+ SRICHD+ISP+GAI+N LELL E ++LI S +A R++ Sbjct: 1 MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG G + +G +I V+ D ++ R++ +W+ ++ R+ ++ + Sbjct: 61 FFRVAFGSAG--EQELGRMEIMSVLGD-VSKGGRIKYNWSSQEAAARRD-VRMAFLAGLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQFY 184 ++LP GG + I ++ + +++ G E ++ + + I +QF Sbjct: 117 LESALPYGGTIQIL----RSTDGWTVTGEGRKINVDEDLWSGLASDAPKVEITPALVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + A E +L + + Sbjct: 173 LLPEAAKEAGRQLSFSQSAEKISI 196 >gi|254292520|ref|YP_003058543.1| hypothetical protein Hbal_0144 [Hirschia baltica ATCC 49814] gi|254041051|gb|ACT57846.1| conserved hypothetical protein [Hirschia baltica ATCC 49814] Length = 206 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 98/208 (47%), Gaps = 3/208 (1%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 + + L ALL S ICH+++SP+ + + L++ + + V LIR SS + +L F+R Sbjct: 1 MEASKLAALLASHICHELVSPVSSFKLVQDSLNDPDMREYVEDLIRSSSETLEYKLTFLR 60 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 A G G D L + + ++++ R + W + + ++++N+ M+A + Sbjct: 61 YALGSVGMQDGYADLHEARSLCQNYMK-GFRADLEWNDTPEITNFAQVRLVMNMMMIATS 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYVI 187 ++PRGG ++++ + ++ I ++ G E+ ++G E + +IQ Y+ Sbjct: 120 AMPRGGMISVTSEKVGDKVILKVEGKGPRVVLNEERRDSLNGVEPEGGWIAKNIQPYFAR 179 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 A E ++ + + L + Sbjct: 180 ECAREIG-AIIELATAEEEISLKCSTPE 206 >gi|163731846|ref|ZP_02139293.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149] gi|161395300|gb|EDQ19622.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149] Length = 198 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 10/201 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLK 65 S+++L AL+ SRICHD+ISPIGAI+N LELLD G M LI+ S +A R++ Sbjct: 1 MGQSNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + R+AFG G + ++G +I +I+D + R+ V+W G R ++ + Sbjct: 61 YFRVAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRLAFLALLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFY 184 ++P GG++ I S+++ + L + + + I+ + + +QF Sbjct: 117 VETAMPYGGRIEI----SQDDGQWLLHGHADKLNIDQTLWDILATKDAPDDLRPAQVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDH 205 + L+A + R + EI Sbjct: 173 LLPLIAGDLNRRTVTEIGKSE 193 >gi|163741038|ref|ZP_02148430.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10] gi|161385391|gb|EDQ09768.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10] Length = 188 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ SRICHD+ISPIGAI+N LELL G + ++LI S +A R++F R+AFG Sbjct: 1 MIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIRFFRIAFGAA- 59 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 D I ++ V+ED I R++ W ++ SR ++ + LP GG Sbjct: 60 -SDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALCLETGLPYGGT 116 Query: 136 VTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194 V I D K +++ G+ + + ++ G +T+ +QF + A + Sbjct: 117 VKILCADGK----WTVIGEGSKLNIDDDLWARVSGGTSSATVTPALVQFAMLPEAAKDLG 172 Query: 195 IRLLPEIIDDHNVV 208 + E + V Sbjct: 173 RTVRVEQTLERVTV 186 >gi|56696855|ref|YP_167218.1| hypothetical protein SPO1983 [Ruegeria pomeroyi DSS-3] gi|56678592|gb|AAV95258.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 198 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 8/203 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65 S ++L +L+ SRICHD+ISPIGAI N LELLD G E M+LI S +A R++ Sbjct: 1 MAQSGVNLASLIGSRICHDLISPIGAITNGLELLDMTGSVEGPEMELIADSVGNAGARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+A+G S D ++G ++ +++D + R + W + ++R ++ Sbjct: 61 FFRIAYGA--SSDQMLGRAELVGLLDD-LNRSARAKADWAPTEP-VTRAEVRMAFLALQC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +LP GG V + D + + L+ P + + + + +QF Sbjct: 117 CETALPFGGSVRM---DQQGDRWIVTAEAEKLSVDPALWEGLSNPAALKQVTPAQVQFAL 173 Query: 186 VILLAHENKIRLLPEIIDDHNVV 208 + +A + R+ E D V+ Sbjct: 174 LPAVAEDAGRRVTVETSDRQLVI 196 >gi|110679883|ref|YP_682890.1| hypothetical protein RD1_2657 [Roseobacter denitrificans OCh 114] gi|109455999|gb|ABG32204.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 198 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 10/201 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK 65 S+++L AL+ SRICHD+ISPIGAI+N LELLD G M LI+ S +A R++ Sbjct: 1 MGQSNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + R+AFG G + ++G +I +I+D + R+ V+W G R ++ + Sbjct: 61 YFRVAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRMAFLALLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFY 184 ++P GG++ IS + + L + + E I+ + +QF Sbjct: 117 VETAMPYGGRIEISQDGGQ----WLLHGHADKLNIDEALWDILATKEAPDDLRPAQVQFA 172 Query: 185 YVILLAHENKIRLLPEIIDDH 205 + L+A + + + EI Sbjct: 173 LLPLIAGDMNRQTVTEIGKSE 193 >gi|148552992|ref|YP_001260574.1| hypothetical protein Swit_0063 [Sphingomonas wittichii RW1] gi|148498182|gb|ABQ66436.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 208 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 9/208 (4%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM 67 S D +LLCSR+CHD++SP+GA++N +ELL + + + M+L+ S+ + RLKF Sbjct: 5 SADFASLLCSRLCHDLLSPVGALNNGIELLADETDPEMRERCMELLAESAQTTANRLKFY 64 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 RLAFG G + + + IE + + +V++ W + L + K LLNL ++A Sbjct: 65 RLAFGAAGGFGERVDTREAREAIEG-LHGNGKVRLGWMVDAPTLPKPAIKTLLNLALIAG 123 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYV 186 +L RGG++ I+ + + ++ G PE ++ + + V Sbjct: 124 DALVRGGQLDIAAEGGE----VVIRAEGPRVVLDPELRNALLGHADPDLVSPRAAAAWLV 179 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 +L E + +D +++ A L Sbjct: 180 HILVSEQGGAVQVSQPEDGLLMIGATLP 207 >gi|260574020|ref|ZP_05842025.1| conserved hypothetical protein [Rhodobacter sp. SW2] gi|259023486|gb|EEW26777.1| conserved hypothetical protein [Rhodobacter sp. SW2] Length = 197 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFM 67 +++ DL+ALL SRICHD+ISPIGAI N +ELL G + LI S +A R++F Sbjct: 1 MANPDLIALLGSRICHDLISPIGAIGNGVELLMMDGSLRGPEIALISESVANANARIRFF 60 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+AFG +G D IG ++ ++ D I R+ + W DL R K++ L Sbjct: 61 RVAFGASG-RDQRIGRPEVMAILTD-ITRGGRLSIDWQSA-GDLPRAEVKLVFLLIQCLE 117 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFY 184 ++ GG++T+ ++ G+ A+ PE + + D + +++ + F Sbjct: 118 TAMAYGGRITVEQTGDG------WRLTGSAAKLKVSPELWDILTDPDATVEVNAAQVHFA 171 Query: 185 YVILLAHENKIRLLPEIIDDH 205 V L + L E+ + Sbjct: 172 LVPLELAQQGRNLTVEMAESE 192 >gi|260426410|ref|ZP_05780389.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260420902|gb|EEX14153.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 201 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLK 65 ++++ + L+ SR+CHD++SPIGAI N LEL+ G E M LI S+ A R+ Sbjct: 1 MSVATARIATLVGSRLCHDLVSPIGAISNGLELIALAGTPGPEEMALIEQSAALATARIN 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG+ S +G + ++++D+ R+ + W D +R ++ + Sbjct: 61 FFRVAFGHA-STQQDVGAREARKLLQDYCK-GSRLSIDW-LPDGDAARTEVQLAFLATLC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184 ++LP GG+V I+ + + + G P+ + Q+ +E+ + +QF Sbjct: 118 CESALPLGGRVHITHIEGGG---WRISGTGQRLSIEPDLWAQLTSTTLEAEVTPARVQFA 174 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + LLA E +++ D + Sbjct: 175 LLALLAPERGRKMVVHAGDAAVTI 198 >gi|221368988|ref|YP_002520084.1| hypothetical protein RSKD131_3151 [Rhodobacter sphaeroides KD131] gi|221162040|gb|ACM03011.1| Hypothetical Protein RSKD131_3151 [Rhodobacter sphaeroides KD131] Length = 276 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 10/207 (4%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59 ++ + DL ALL SRICHD+ISPIGAI N +E LL + I M LI S Sbjct: 73 LSWSPPMT-EKTDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTH 131 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 A R++F R+AFG T +D IG +I ++ D + R+Q+ W G DL R K+ Sbjct: 132 ANARIRFFRVAFGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLA 188 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDS 178 L + ++ GG++ + +N+ + L N + P+ + + + + + + Sbjct: 189 FLLVLCLETAMAYGGRIRV----ERNDARWLLVGQANKMKIEPDLWEMLSNPMAQVEMSA 244 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDH 205 +QF V RL EI + Sbjct: 245 ARVQFALVPDEMSRQGRRLTSEIRESE 271 >gi|302382297|ref|YP_003818120.1| hypothetical protein Bresu_1185 [Brevundimonas subvibrioides ATCC 15264] gi|302192925|gb|ADL00497.1| Protein of unknown function DUF2328 [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 7/213 (3%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAII 62 + +L +L+ +++CHD ISP GAI + L+LL++ + D+ + LI S+ + Sbjct: 12 SLPMDGPELASLIAAKLCHDFISPSGAIVSGLDLLNDPTAQDMRDDAISLITDSAKKMVA 71 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 ++F R+AFG + + G+ + + D + R + W E D S+ +A+ ++NL Sbjct: 72 LVQFCRVAFGAATTAERF--TGEELRALVDGVTHGGRATLDWRLEVADFSKPQARAMVNL 129 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDI 181 + A+LP GG+ ++ + + G AR PE T + + + + Sbjct: 130 AYLTVAALPMGGQAVVTARTQGAGIVLEGLAEGARARLKPEAATGLAGQRLTEGLAGQWV 189 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q Y++ L + L E + + VVL+ + Sbjct: 190 QPYWLWLTIRQAHGTLNVEAV-EGRVVLTGTIP 221 >gi|197103762|ref|YP_002129139.1| hypothetical protein PHZ_c0296 [Phenylobacterium zucineum HLK1] gi|196477182|gb|ACG76710.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 219 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 7/213 (3%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAII 62 + +L A L +R+CHD ISP AI + L+LL++ + +E M LI S+ Sbjct: 9 PAAVRPAELAAFLAARMCHDFISPASAIVSGLDLLEDPSAQDMREEAMGLIESSARKLAD 68 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 L F R+AFG + S ++ D+E++ A R ++ WT E +++ A+ LLNL Sbjct: 69 LLAFCRVAFGASASAETF-DPRDLEKLARGVFA-HMRAELDWTLETPAVNKPTARTLLNL 126 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDI 181 +A A+LP GG + + +++ G AR PE + + + H + Sbjct: 127 AQMAGAALPTGGTARVRAVQEGAQVALAVEATGPRARLRPEVLRGLQGEPLGEGLHGHWV 186 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Q YYV L + R+ ++ ++ +V +A L Sbjct: 187 QAYYVHLFVADAGGRVFADV-NEERIVFAATLP 218 >gi|146279809|ref|YP_001169967.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC 17025] gi|145558050|gb|ABP72662.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC 17025] Length = 198 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 9/196 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLA 70 DL ALL SRICHD+ISPIGAI N +ELL G M LI S +A R++F R+A Sbjct: 5 TDLAALLGSRICHDLISPIGAIGNGVELLMMDGSIRGPEMTLISESVANANARIRFFRVA 64 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 FG TG + IG +I +++D + R+Q+ W G DL R K+ L + ++ Sbjct: 65 FGATG-AEQRIGRPEILSILQD-LTRGGRLQIDWQGP-TDLQRREVKLAFLLILCLETAM 121 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILL 189 GG++ + +N+ + L + R +++ + + + + F V Sbjct: 122 AYGGRIRV----ERNDARWVLVGQAHKIRIDADLWEMLSNPMAQVEMSAARVHFALVPDE 177 Query: 190 AHENKIRLLPEIIDDH 205 RL EI + Sbjct: 178 MSRQGRRLTSEIRETE 193 >gi|163746346|ref|ZP_02153704.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45] gi|161380231|gb|EDQ04642.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45] Length = 200 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 12/201 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIR 63 ++DL AL+ SRICHD+ISPIGAI+N LELL+ G ++LI S SA R Sbjct: 1 MGPINLDLPALIGSRICHDLISPIGAINNGLELLNMAGTGAAPGPELELIGQSVESASAR 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 ++F R+AFG +G D +G G++ ++ D D R+++ W SR+ ++ Sbjct: 61 IRFFRIAFGASG--DQAMGQGEVTSILRDLYT-DTRIEIDWQITAPQ-SRDCVRMAFLSL 116 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNL-ARFPEKFTQIVDGNVESTIDSHDIQ 182 M +L GG +TI+ + + L+ + A PE + + + + + +Q Sbjct: 117 MCMETALHHGGLITIA----EQAGKWRLQAEADKIAVEPELWALLSKVDQDLQLQPAQVQ 172 Query: 183 FYYVILLAHENKIRLLPEIID 203 F + +LA + + Sbjct: 173 FALLPILARAQGKEISLTNTE 193 >gi|114797307|ref|YP_759367.1| hypothetical protein HNE_0638 [Hyphomonas neptunium ATCC 15444] gi|114737481|gb|ABI75606.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 215 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 5/210 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSMSAIIR 63 NL A + +R+CHDI+SP + SLE+LD G +E Q +R + Sbjct: 1 MNLDHARFAAFISARLCHDIVSPAATMSLSLEMLDSPGSAEEKEQSERTLREGAHGVTAT 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F+R AFG G + +++ +D++ + + W L+ A++++NL Sbjct: 61 LQFLRYAFGSMGLQPGTADVHQFKKLTDDYLRFQ-KPSIDWDLSTPVLTFAEARLIMNLV 119 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182 MV + RGG + ++V++ +L G+ + E + + G +IQ Sbjct: 120 MVCLTATVRGGIIHVNVREDNGAKTLTLTCKGDRLKLKEDVVKALKGEEPEHGWRPENIQ 179 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + L L D VV A Sbjct: 180 PMFAKLTCDSLGGTLHARQAPDGTVVFMAT 209 >gi|126729826|ref|ZP_01745639.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37] gi|126709945|gb|EBA08998.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37] Length = 201 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 10/197 (5%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFMR 68 S L AL+ SR+CHD+ISPIGAI N LEL+ G + M LI+ S SA R++F R Sbjct: 5 SATLAALVGSRLCHDLISPIGAIQNGLELIALSGADQSSPEMALIQESCDSAAARIRFFR 64 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG G ++ ++ ++ + R++ W D SR ++ F + Sbjct: 65 VAFGAPGET-QMMSRREVSAILSG-VTKGGRLKAEW-VAGEDQSRPEVQLCFLAFQCCES 121 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVI 187 +LP GG V I + ++++ +G + ++G T + + F + Sbjct: 122 ALPMGGTVRI----ENDAAGWTVRASGTRINGDRVYWDHINGAAPLETPPADKVHFALLP 177 Query: 188 LLAHENKIRLLPEIIDD 204 +LA +LL + D Sbjct: 178 ILAAARGRQLLATLTGD 194 >gi|332560608|ref|ZP_08414926.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N] gi|332274406|gb|EGJ19722.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N] Length = 198 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 9/196 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 DL ALL SRICHD+ISPIGAI N +E LL + I M LI S A R++F R+A Sbjct: 5 TDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVA 64 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 FG T +D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 65 FGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLAFLLVLCLETAM 121 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILL 189 GG++ + D++ + L N + P+ + + + + I + +QF V Sbjct: 122 AYGGRIRVERSDAR----WLLVGQANKMKIEPDLWEMLSNPMAQVEISAARVQFALVPDE 177 Query: 190 AHENKIRLLPEIIDDH 205 RL EI + Sbjct: 178 MSRQGRRLTSEIRESE 193 >gi|296284605|ref|ZP_06862603.1| hypothetical protein CbatJ_13301 [Citromicrobium bathyomarinum JL354] Length = 226 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 5/211 (2%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64 + L + LCSR+CHD++SP+GA+ N LELL + + +L+ S+ ++ +L Sbjct: 6 ETDPLLLASQLCSRLCHDMLSPVGALTNGLELLADEKDPQMRQRCFELLEQSARTSAAKL 65 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 KF RLAFG G + + + + VIE A KRV+++W E +S+ AK++LNL Sbjct: 66 KFFRLAFGAAGGFGEQVSIDEPKAVIETLAADAKRVELNWAIEAASVSKSAAKVMLNLAN 125 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQF 183 + +L RGG + + ++ + ++ G F + + G + + + Sbjct: 126 IGLDALVRGGTLDVGIEVRDDATEIVVRAAGAKIAFDPVIGEALGGRMDPAELTGRTAPA 185 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +LA + L+ + +++ A L Sbjct: 186 HLLAMLADKEGG-LIQTHAEVGTLLMGATLP 215 >gi|329891303|ref|ZP_08269646.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568] gi|328846604|gb|EGF96168.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568] Length = 252 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 7/212 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIR 63 + +L A + +++CHD ISP GA+ + L+LLD+ + D+ + LIR S+ + Sbjct: 30 LPVDGAELAAFIAAKLCHDFISPAGAVMSGLDLLDDPTAQDMRDDALGLIRQSAAKMVAL 89 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + F R+AFG S + G ++ ++ + R + W + ++ +A+ L+NL Sbjct: 90 VHFARVAFGAATSSEQFSG-AELHGLVAG-LTDGGRATLDWRVGEETFTKIQARALINLA 147 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQ 182 + ++LP GG ++V+ ++ G AR PE + + + IQ Sbjct: 148 YLTVSALPMGGAAVVTVRREGDQLFLVGSAEGARARLKPEAVVGLKGERLTEGLAGQWIQ 207 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y++ L A E RL ++ V L A L Sbjct: 208 PYWLWLTAREAGGRLDL-ATEEGRVALMARLP 238 >gi|295691366|ref|YP_003595059.1| hypothetical protein Cseg_4029 [Caulobacter segnis ATCC 21756] gi|295433269|gb|ADG12441.1| Protein of unknown function DUF2328 [Caulobacter segnis ATCC 21756] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 6/211 (2%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60 ++ D A+L +R+CHD ISP AI + L+LL++ + ++ M LI S+ Sbjct: 17 TPQTDVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPAAQDMREDAMSLIASSARKL 76 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L+F R+AFG + S ++ ++E++ + A R ++W E +++ A+ +L Sbjct: 77 ADLLQFTRVAFGASASAENF-DSRELEKLAQGVFA-HVRPTLNWAIEPQAMNKPSARAVL 134 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSH 179 N+ +A ++LP GG T+ ++ + G AR PE + + + Sbjct: 135 NIAQIAASALPAGGVATVKGVNADGRFSIIAEAIGPRARLRPEVLAGLKGEPLAEGLGGP 194 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +Q Y+ L ++ E+ +D V + Sbjct: 195 WVQAAYLNALVRAAGGQIAAEVGEDRASVAA 225 >gi|83859260|ref|ZP_00952781.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii HTCC2633] gi|83852707|gb|EAP90560.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii HTCC2633] Length = 225 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 7/209 (3%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66 ++ +L ALL SR+CHDI P A+ +L +LD+ + D+ + L+R + +L++ Sbjct: 8 TAAELAALLSSRVCHDIAGPTSAMGAALSVLDDESALDMRDDAIALLRTGAKQIRAKLEY 67 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+ FG GS + L +I+ + E D R + W + +S+ A++LLNL + Sbjct: 68 ARVCFGAAGSRGGEVSLSEIKSLAEPMFE-DSRPDLVWPSDGGAISKTAARVLLNLIWIG 126 Query: 127 HASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFY 184 SLPRGG+V I S + G R E + + + G E D +Q Y Sbjct: 127 VDSLPRGGEVIIEASASSDGGARLRVAAKGMRLRLDEAYQKAIRGERPEDGYDGRSVQPY 186 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213 Y L+A E+ R +D V L+AL+ Sbjct: 187 YAGLIARESGGRAEAR-LDGDRVELAALI 214 >gi|126464268|ref|YP_001045381.1| hypothetical protein Rsph17029_3517 [Rhodobacter sphaeroides ATCC 17029] gi|126106079|gb|ABN78609.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029] Length = 198 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 9/196 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 DL ALL SRICHD+ISPIGAI N +E LL + I M LI S A R++F R+A Sbjct: 5 TDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVA 64 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 FG T +D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 65 FGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLAFLLVLCLETAM 121 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILL 189 GG++ + D++ + L N + P+ + + + + + + +QF V Sbjct: 122 AYGGRIRVERSDAR----WLLVGQANKMKIEPDLWEMLSNPMAQVEMSAARVQFALVPDE 177 Query: 190 AHENKIRLLPEIIDDH 205 RL EI + Sbjct: 178 MSRQGRRLTSEIRESE 193 >gi|326386902|ref|ZP_08208516.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM 19370] gi|326208582|gb|EGD59385.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM 19370] Length = 217 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 9/216 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63 ++S++L +LL SR+CHD++SP+GA+ N LELL + + +L+ S+ ++ + Sbjct: 1 MTIASLELASLLASRLCHDMLSPVGAMSNGLELLTEEKDPEMRQRCFELLEQSAKASADK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 L+F RLAFG G + L + V++ + + R+ ++W+ + + K+LLNL Sbjct: 61 LRFFRLAFGAAGGFGDTVPLSEPRAVVDALVGGNGRISLNWSLSGDAMPKSAVKVLLNLA 120 Query: 124 MVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGNV-ESTIDS 178 ++ +L RGG + I+ + + ++ +G F +DG + + S Sbjct: 121 LIGIEALVRGGTLEIAAEVRGTAEHAVSEIVVRASGPRIAFDPAVGHALDGTLSPDALSS 180 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L L + D +V+ A L Sbjct: 181 KTAPAVMIHELTSSLGGGLQYHVGADA-LVMGAALP 215 >gi|16127700|ref|NP_422264.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15] gi|221236520|ref|YP_002518957.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000] gi|13425192|gb|AAK25432.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15] gi|148839268|tpg|DAA06031.1| TPA_exp: ChpT [Caulobacter vibrioides] gi|220965693|gb|ACL97049.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000] Length = 253 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 6/211 (2%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60 + ++ D A+L +R+CHD ISP AI + L+LL++ + D+ M LI S+ Sbjct: 41 SPEADVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKL 100 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 L+F R+AFG + S ++ ++E++ + A R + W E +++ ++ +L Sbjct: 101 ADLLQFTRVAFGASASAENF-DSRELEKLAQGVFA-HVRPTLDWQIEPQAMNKPSSRAVL 158 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSH 179 N+ +A ++LP GG T+ + G AR PE + + + Sbjct: 159 NIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGP 218 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +Q Y+ L ++ EI +D + + Sbjct: 219 WVQAAYLNALVRAAGGQIAVEIGEDRASIAA 249 >gi|77465006|ref|YP_354509.1| hypothetical protein RSP_3825 [Rhodobacter sphaeroides 2.4.1] gi|77389424|gb|ABA80608.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 198 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 9/196 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 DL ALL SRICHD+ISPIGAI N +E LL + I M LI S A R++F R+A Sbjct: 5 TDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVA 64 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 FG T +D IG +I ++ D + R+Q+ W G DL R K+ L + ++ Sbjct: 65 FGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLAFLLVLCLETAM 121 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILL 189 GG++ + D++ + L N + P+ + + + + + + +QF V Sbjct: 122 AYGGRIRVERSDAR----WLLVGQANKMKIEPDLWEMLSNPMAQVEMSAARVQFALVPDE 177 Query: 190 AHENKIRLLPEIIDDH 205 RL EI + Sbjct: 178 MSRQGRRLTSEIRETE 193 >gi|294678519|ref|YP_003579134.1| hypothetical protein RCAP_rcc03000 [Rhodobacter capsulatus SB 1003] gi|294477339|gb|ADE86727.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003] Length = 210 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 9/195 (4%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMR 68 S DLVAL+ SR+CHD+ISP+GAI N +ELL+ G + +QLI S +A R+KF R Sbjct: 17 SEADLVALVGSRLCHDLISPLGAIGNGVELLNMSGLADSPEVQLISQSVAAANARIKFFR 76 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG SVD IG +I V+E+ I+ RV+ W G D SR K++ + Sbjct: 77 IAFGQA-SVDQRIGTPEILGVLEE-ISRGGRVKYHWLGA-GDQSRRVVKLIFLGLLCLEP 133 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 +LP GG+V I+ +D + + L + + + G++ T+ +QF + Sbjct: 134 ALPWGGEVVITEEDGE----WRLVAQAKRTKPDPELWARLSGSL-VTVSPAQVQFLLLPR 188 Query: 189 LAHENKIRLLPEIID 203 A R++ ++ + Sbjct: 189 EAGHQGRRVVWDVAE 203 >gi|254418211|ref|ZP_05031935.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3] gi|196184388|gb|EDX79364.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3] Length = 236 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 7/214 (3%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61 + + ++L + +++CHD ISP GAI + L+L+ + + ++ + LI S+ + Sbjct: 25 LDLPVDGIELATYVAAKLCHDFISPSGAIVSGLDLMRDPSAQDMREDALSLIEQSARKMV 84 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 + F R+AFG + + +++ ++ + R + W + + S+ +A+ L N Sbjct: 85 ALVHFARVAFGAATTSERFTAR-ELQSLVTG-LTEGGRASLDWRIHEGEFSKPQARALTN 142 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHD 180 L + +LP GG I + G AR PE T + + + Sbjct: 143 LAYLTVGALPMGGDAVIQSRVENGFLFIEGFAEGARARLKPEAVTGLAGERLIEGLAGQW 202 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 IQ Y++ L E L ++D VVL A + Sbjct: 203 IQPYWLWLTVVEAGGSLHV-TVEDGRVVLVARMP 235 >gi|254488919|ref|ZP_05102124.1| conserved hypothetical protein [Roseobacter sp. GAI101] gi|214045788|gb|EEB86426.1| conserved hypothetical protein [Roseobacter sp. GAI101] Length = 198 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 8/203 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK 65 + S ++ L+ SRICHD+ISPIGAI+N LEL+ G M+LI S SA R++ Sbjct: 1 MSRSDLEFATLIGSRICHDLISPIGAINNGLELVSMSGGGSGPEMELIGDSVGSASARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+AFG G D +G ++ ++ D + R V+W R ++ + Sbjct: 61 FFRIAFGAAG--DQSLGSAEVTSILRDLY-RESRSSVAWNIPDAQ-PRSDVRLAFLALLC 116 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +P GG V + +K + L P+ + + + + + +QF Sbjct: 117 LETGMPYGGAVVVERDGAKWVIRGTAH---KLIIDPDLWALLATQDQKLKLKPAHVQFGL 173 Query: 186 VILLAHENKIRLLPEIIDDHNVV 208 + A ++ ++ + + ++ Sbjct: 174 LPASASDDGRQITSKATETEIMI 196 >gi|83953645|ref|ZP_00962366.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1] gi|83841590|gb|EAP80759.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1] Length = 200 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 10/196 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMR 68 + DL AL+ SRICHD+ISP+GAI+N LELL G+ + LI S +A RL+F R Sbjct: 4 TDTDLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG + + + ++ D A + QVSW + + R +++ + Sbjct: 64 VAFGAGDAQP--VPAQETSGILRDLYA-QSKWQVSW-PDGVAAPRNALRMVFLSLLCLET 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVI 187 +P GG++TI +D+ + + + ++ G + + +QF + Sbjct: 120 GMPYGGQITIDHRDAG----WDITGTADRLSIHAALWGVLAGQSRAERLTASQVQFGLLP 175 Query: 188 LLAHENKIRLLPEIID 203 + ++ +L + + Sbjct: 176 AIVKDSGQQLTSIVTE 191 >gi|83942425|ref|ZP_00954886.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36] gi|83846518|gb|EAP84394.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36] Length = 200 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 10/196 (5%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMR 68 + DL AL+ SRICHD+ISP+GAI+N LELL G+ + LI S +A RL+F R Sbjct: 4 TDTDLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFR 63 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +AFG + + + ++ D A + QVSW + + R +++ + Sbjct: 64 VAFGSGDAQP--VPAQETSGILRDLYA-QSKWQVSW-PDGVAAPRNALRMVFLSLLCLET 119 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVI 187 +P GG++ I +D+ + + + ++ G + + +QF + Sbjct: 120 GMPYGGQINIDHRDAG----WDITGTADRLSINAALWGVLAGQSRAERLTASQVQFGLLP 175 Query: 188 LLAHENKIRLLPEIID 203 + ++ +L + + Sbjct: 176 AIVKDSGQQLTSIVTE 191 >gi|254461651|ref|ZP_05075067.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206678240|gb|EDZ42727.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 204 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 16/211 (7%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65 + + AL+ +RICHD+ISPIGAI+N +ELL G + ++LI S +A R++ Sbjct: 1 MDEHKLQFSALVGARICHDLISPIGAINNGMELLSMSGAPQSPEIELIAQSVDAANARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F R+A+G T S + +G +I ++ D R+ ++W + D++R +++ Sbjct: 61 FFRIAYGAT-STEQFLGRSEITSILRD-FTKGSRLVLNWHPLE-DVTRSEVQLVFLAIQC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-------STIDS 178 A +LP GG V I + +SL ++G + + G E TI + Sbjct: 118 AEQALPYGGHVEI----ERLRGRWSLALSGERISLDQDLWDSLAGISEFKPEAYRETIPA 173 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 H +QF + + A + + +L Sbjct: 174 H-VQFLLLPMHARDLDRTPNYTQSETEVTLL 203 >gi|167644070|ref|YP_001681733.1| hypothetical protein Caul_0097 [Caulobacter sp. K31] gi|167346500|gb|ABZ69235.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 230 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 7/214 (3%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61 +++ D AL+ +R+CHD ISP AI + L+LL++ + ++ M LI S+ Sbjct: 19 PELDVNGPDFAALVAARLCHDFISPASAIVSGLDLLEDPSAQDMREDAMSLISSSARKLA 78 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L+F R+AFG + S ++ ++E++ + A R + W +++ A+ +LN Sbjct: 79 DLLQFTRVAFGASASAENF-DSRELEKLAQGVFA-HVRPTMDWAIPPSTMNKASARAILN 136 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHD 180 + +A ++LP GGK T+ + + G AR PE + + + Sbjct: 137 IAQIAASALPAGGKATLRAVVLDDRVAITADSVGPRARLRPEVLAGLKGEALSEGLGGPW 196 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +Q Y+ L ++ E+ +D V L+A + Sbjct: 197 VQAAYLHALVRAAGGQIGVELSED-RVSLAAWVP 229 >gi|126736805|ref|ZP_01752542.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2] gi|126713706|gb|EBA10580.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2] Length = 196 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 9/199 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLA 70 DL AL+ SRICHD+ISPIGAI N +ELL + M+LI S +A R+++ R+A Sbjct: 3 PDLAALVGSRICHDLISPIGAIGNGVELLALTDGDTGAEMELINESVQNASARIRYFRIA 62 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 +G S + ++ +I ++ A R+ W + D R + L ASL Sbjct: 63 YGAA-SEEQMVSRSEILSILAA-TARGGRINYIWKID-GDQPRRLVRCALLTLQAIEASL 119 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVILL 189 P GG + I+ ++ ++ ++ G E + ++ V + +QF + + Sbjct: 120 PLGGDIHITQEEE----MWVMRGEGPRLTLDKELWNNLLSPQVGFHYTAAHVQFALLPGV 175 Query: 190 AHENKIRLLPEIIDDHNVV 208 E L + +H VV Sbjct: 176 LAEAGRVLQFKHEANHMVV 194 >gi|114766184|ref|ZP_01445184.1| hypothetical protein 1100011001298_R2601_22457 [Pelagibaca bermudensis HTCC2601] gi|114541555|gb|EAU44598.1| hypothetical protein R2601_22457 [Roseovarius sp. HTCC2601] Length = 200 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 9/205 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLK 65 + S + L+ SRICHD++SP+GAI N LEL+ G E M LI S SA R+ Sbjct: 1 MSNDSARIAGLVGSRICHDLVSPVGAISNGLELIALAGQPGPEEMALISQSCSSATARIN 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 R+AFG S D IG + +++ + A R+ + W D R+ ++ + + Sbjct: 61 LFRMAFGAA-SADQQIGGAEARKLLAGYCA-GGRLSIDW-LPSGDAERQDMQLAMLAALC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184 ++LP GGKV ++ ++ + + G + + G + + + F Sbjct: 118 CESALPLGGKVAVA----EDGGGWRVTGTGPRLNIEAAAWAMLSGGALPDDLPPARVHFA 173 Query: 185 YVILLAHENKIRLLPEIIDDHNVVL 209 + LA E +L + V Sbjct: 174 LLGALAPERGRKLDVSTGEAAVSVA 198 >gi|255261517|ref|ZP_05340859.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255103852|gb|EET46526.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 204 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 10/201 (4%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRL 69 S L AL+ SRICHD+ISP+GAI N +ELL+ + D +QLI S +A R+ F R+ Sbjct: 9 SAQLSALVGSRICHDLISPLGAISNGIELLEMSNLADTPEVQLIAESIANANARILFFRV 68 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 AFG + I +I Q + IA RVQ W D SR +IL L + ++ Sbjct: 69 AFGSSTET-QRINQSEINQTL-GAIAAGARVQYRWQAA-GDHSRPDVRILFLLILCIESA 125 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVI 187 + GG++T+ D+K + + + + + + I + + F V Sbjct: 126 MAFGGEITVQSVDAK----WRICGEADKLKIDQPLWDTLSAPSSQAAKIPASAVHFALVT 181 Query: 188 LLAHENKIRLLPEIIDDHNVV 208 RL ++ D + Sbjct: 182 EHCRAADRRLKVDLTDQKIRI 202 >gi|159044019|ref|YP_001532813.1| hypothetical protein Dshi_1470 [Dinoroseobacter shibae DFL 12] gi|157911779|gb|ABV93212.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 204 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 14/203 (6%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL AL+ SRICHD+ISP+GAI N LELL G E M LI S SA R++F R+A+ Sbjct: 12 DLSALIGSRICHDLISPLGAIGNGLELLQMSGASESPEMTLIADSVTSANARIRFFRIAY 71 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G + +I ++ + R+Q+ W E D+ R AK ++P Sbjct: 72 GDA-VQNQMIKGAELRGALHGSYQ-GSRLQIDWQPE--DMLRSTAKRGFLALQCLETAMP 127 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVIL 188 GG++ ++ L G+ RF + + + +QF + Sbjct: 128 YGGRIRAVDVGARG-----LVFEGSAERFAYDATLWEGLTQNGPWDGVRPAQVQFPLLAE 182 Query: 189 LAHENKIRLLPEIIDDHNVVLSA 211 LA E + D + LS Sbjct: 183 LAREAGNAISVSRT-DATLTLSV 204 >gi|315497651|ref|YP_004086455.1| hypothetical protein Astex_0617 [Asticcacaulis excentricus CB 48] gi|315415663|gb|ADU12304.1| Protein of unknown function DUF2328 [Asticcacaulis excentricus CB 48] Length = 234 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 99/210 (47%), Gaps = 6/210 (2%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66 + +L L +++CHD ISP GAI + L+LL + + D+ + LI+ S+ + + F Sbjct: 26 NPHELATQLVAKLCHDFISPTGAIISGLDLLSDPSAQDMRDDAVNLIQASATKLVTLVHF 85 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG S ++ ++ +++ D + + +++ + A+ L+NL +A Sbjct: 86 ARVAFGAATSAEAF-SAKELNKILSDVFSTMRATLDFDVADEVVFEKPAARALMNLGYIA 144 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYY 185 +LP GG T+ +++ + + NG AR PE + + + IQ ++ Sbjct: 145 GNALPTGGTATLRREETDEAITLTAQSNGPRARLKPEAVEGLNGQPLSDGLSGQWIQPFW 204 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E L +D ++ + +L K Sbjct: 205 LHSVVQEAGGTLRV-TLDPDSLGIKIVLPK 233 >gi|84501044|ref|ZP_00999279.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597] gi|84391111|gb|EAQ03529.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597] Length = 201 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 10/208 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 + L AL+ SRICHD+ISP+GAI N +ELL + LI S +A R++F Sbjct: 1 MTQDNQRLAALIGSRICHDLISPVGAIQNGVELLAMERQAGPELALIEDSVNNASARIRF 60 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 +R+AFG G + +I + D I R++ W +R + + M Sbjct: 61 LRIAFGLAG-AGQPMSPQEICGTLSD-IGRAGRIRHDW-IPVETCTRRETQEVFLAMMCL 117 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFY 184 +++PRGG ++++ +++ + R +++ N D +QF Sbjct: 118 ESAMPRGGTISVA----TGGQGWTVSGPADPDRPDPALWRMLASNAVGVADVVPAQVQFA 173 Query: 185 YV-ILLAHENKIRLLPEIIDDHNVVLSA 211 ++ LA L+ + + L A Sbjct: 174 FLSGQLADRGVAALVVTAGEGITIRLPA 201 >gi|126726414|ref|ZP_01742255.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium HTCC2150] gi|126704277|gb|EBA03369.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium HTCC2150] Length = 200 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 17/201 (8%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65 ++ + L AL+ SRICHD+I+P+GAI N LELL G + LI S +A R+K Sbjct: 1 MSIDAEKLCALVSSRICHDVINPLGAIGNGLELLSLGGDLSGPEIDLIDASHKNAEARVK 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERAKILLNL 122 F+R AFG TG + + I D+E+ +++ A R+++ L R K Sbjct: 61 FLRHAFGETG-IGATINGQDVEKTAQNYCATSNIKARLKL-----ANSLPRPEVKRTYLA 114 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-FPEKFTQIVDGNVES-TIDSHD 180 M +L GG + +S +S + + N R + +T ++ + + I++ + Sbjct: 115 IMCMMQTLSFGGDIHVSQSNSG----WKIVGNAERRRNIKDLWTALLINDFSTLEIEASN 170 Query: 181 IQFYYVIL-LAHENKIRLLPE 200 IQF + L L+ +KI +L E Sbjct: 171 IQFVLLSLELSKAHKIPMLQE 191 >gi|85702935|ref|ZP_01034039.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217] gi|85671863|gb|EAQ26720.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217] Length = 199 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 7/203 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 S L AL+ SRICHD++SP+GAI N LELL G + + LI S+ +A R++ Sbjct: 1 MPQHSQPLAALIASRICHDLVSPLGAISNGLELLHLSGVPQSPELTLITSSATNATARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F RLAFG I D+ ++ + V+ R+ + D+ A+ LL + Sbjct: 61 FFRLAFGQA-DKGQSIHAKDLCDILTA-VHVEGRITLDLRL-SDDIPHPMAQALLLTILC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++P GG + +S + + + +G L + + I + + F Sbjct: 118 VEQAMPYGGLLHVSRLNDRWHITAT---SGRLTPDLTLWAALSGSEKWPDISASQVHFLL 174 Query: 186 VILLAHENKIRLLPEIIDDHNVV 208 + + + D V Sbjct: 175 LFQCLENQSSHIDTTLSDTEFRV 197 >gi|329849905|ref|ZP_08264751.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19] gi|328841816|gb|EGF91386.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19] Length = 254 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 5 ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61 + +S DL + +++CHD ISP GAI + L+LLD+ + E + LI S+ + Sbjct: 41 AAADFTSHDLATQMVAKLCHDFISPAGAIMSGLDLLDDPSAQDMRQEALNLIAASAKKMV 100 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILL 120 + F R+AFG + S ++ G G + +++ D + R Q+ + + + + A+ LL Sbjct: 101 TLVHFARVAFGASNSAEAFSG-GQLNKILGDVFSTM-RAQLDFAIDGNLIFPKAAARALL 158 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSH 179 NL ++A SLP GG + + S + + G AR + T+ + G + + Sbjct: 159 NLGLIAGNSLPTGGTARLEARFSDDGIRLIAESRGPRARLKAEATEGLKGLPLSDGLAGQ 218 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 IQ +++ E L D Sbjct: 219 WIQPHWLYATVQEAGGTLEFRADTDA 244 >gi|83952102|ref|ZP_00960834.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM] gi|83837108|gb|EAP76405.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM] Length = 179 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 10/185 (5%) Query: 26 IISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG 84 +ISP+GAI+N LELLD + LIR S+ A R++F RLAFG D + Sbjct: 1 MISPVGAINNGLELLDLAHSAQGAEFTLIRDSAAQATSRIRFFRLAFGAA-HKDQAVSAP 59 Query: 85 DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK 144 ++ ++ ++V+W E+ + R RAK + LP GG++ ++ + Sbjct: 60 EMASLLRHCFP--GPLRVTWEVEETLI-RPRAKAACLAILCLDRCLPYGGEIRVAPHGA- 115 Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 ++ R + + ++DG + ++QF + A N + L + D Sbjct: 116 ---ALAITTQSEGLRAHDPYWSLLDGRPIPEDLPPAEVQFALLPHTAQRNDLNLSAQHTD 172 Query: 204 DHNVV 208 DH + Sbjct: 173 DHAQI 177 >gi|310815613|ref|YP_003963577.1| hypothetical protein EIO_1132 [Ketogulonicigenium vulgare Y25] gi|308754348|gb|ADO42277.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25] Length = 194 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 9/187 (4%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 DL AL+ SRI HD+ +P+GAI N +ELL V ++LI S SA RL+ +RLAF Sbjct: 3 ADLTALVTSRISHDLFNPLGAISNGVELLGLV-APSPELELIGDSVKSATARLQMLRLAF 61 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 G GS + D + ++ R + + R AK+L L + ASLP Sbjct: 62 GAAGS--GAVTARDWAATLAG-VSAGGRGKYKHNSPTP-VPRNEAKVLALLGLCCDASLP 117 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYVILLA 190 GG++ S + +S++ +G RF V G ++ +QF V Sbjct: 118 YGGEIVFSPHGNGG---WSVQASGREVRFNAHLWGCVTGLAPREPVEPSHVQFLLVAAAV 174 Query: 191 HENKIRL 197 + ++ Sbjct: 175 ADLGRQI 181 >gi|103487226|ref|YP_616787.1| hypothetical protein Sala_1741 [Sphingopyxis alaskensis RB2256] gi|98977303|gb|ABF53454.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 214 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 5/211 (2%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 + +D ++L SR+CHD++SP+GA N LELL + + ++L+ S+ ++ + Sbjct: 1 MSDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANK 60 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LKF RLAFG G L+ + + IE I D+ + ++W L + KI+LNL Sbjct: 61 LKFFRLAFGSAGGFGELVPPEEAKSAIEGIIG-DRAITLNWMIGADPLPKPAVKIILNLA 119 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQ 182 ++ +L RGG++ + + + +L + +I+ G S + S Sbjct: 120 LLLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADVERILAEGEAASPMTSRTAP 179 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 V +A ++ ++ ++++ A+L Sbjct: 180 AVLVQAVARQSDGTVMLARETPTSLLVGAVL 210 >gi|119387209|ref|YP_918264.1| hypothetical protein Pden_4504 [Paracoccus denitrificans PD1222] gi|119377804|gb|ABL72568.1| conserved hypothetical protein [Paracoccus denitrificans PD1222] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 15/206 (7%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58 ++ L AL+ SR+CHDI+SP+GAI N LELL G MQLI S Sbjct: 11 EPPGAIAPERLAALVGSRLCHDIVSPLGAIGNGLELLQLSGAWPGIDASPEMQLIAESVE 70 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 +A R+++ R+AFG+ D + + ++ + D + R+++ E DL R A++ Sbjct: 71 AARARVRWFRVAFGHAA-PDQRLSMAELAALFAD-VEKGGRIRLRLEAE-GDLPRPEARM 127 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 +L M ++P GG V + + + + L + + + G Sbjct: 128 ILLALMCLETAMPWGGSVLVC----RGASGWRLVAECSRTKPDPALWSWLDAAPGRERPE 183 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEI 201 + ++ F + A L E+ Sbjct: 184 AGASEVHFPLLAGFARAAGRPLAWEL 209 >gi|288962381|ref|YP_003452676.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510] gi|288914647|dbj|BAI76132.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 18/211 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAIIRLK 65 LL S++CHD++SP+GAI N LEL++E G E ++LI SS A RL+ Sbjct: 17 ELLASKLCHDLVSPVGAIRNGLELIEEMQEDEDGGAIGGFLGEAVKLIDHSSGQADRRLR 76 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLN 121 RLA+G G G GD ++ R ++ W + R K+LLN Sbjct: 77 VFRLAYGQAGR--DQKGFGDARAAAAGYVE-GGRTRLDWPERVPHDMTAQRRGVVKLLLN 133 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING-NLARFPEKFTQIVDGNVESTIDSHD 180 L M+A +L GG V+++ + ++ G P+ + + + Sbjct: 134 LVMLADEALTHGGVVSVAADGDETAGGVTVTAAGRPGGLNPDAAAALAGTASAAALTPRT 193 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 I Y LA + R+ +VL+A Sbjct: 194 IHAYITGRLAEADGFRIGVVPEGGERLVLTA 224 >gi|149915194|ref|ZP_01903722.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b] gi|149810915|gb|EDM70754.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b] Length = 199 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 9/204 (4%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65 S ++ AL SRICHD+ISPIGA+ N +EL+ G + M L+ S+ A R++ Sbjct: 1 MPYHSHNIAALTASRICHDLISPIGAVANGMELMQFAGASDGPEMALVSESAAHAKARIR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F RL FG S ++ ++ +++ R+++ T ++ L R A+ +L + Sbjct: 61 FFRLTFGIA-SDSQMVAAEEVNEILNAIYG-GTRIEIETTLDRS-LPRAMAQAVLLAVLC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFY 184 A L GG++ + + ++ R + G I +QF Sbjct: 118 AEHGLGVGGQLRVHEVGE----HWQIEARSPRLRADPGLWGSLTGQPVPQDIPPAAVQFL 173 Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208 + L+ + + +D + Sbjct: 174 LLPLILTDLGRTCACSLTEDSARI 197 >gi|304321420|ref|YP_003855063.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis HTCC2503] gi|303300322|gb|ADM09921.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis HTCC2503] Length = 208 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 93/209 (44%), Gaps = 7/209 (3%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIR 63 ++ + +L+ SR+CHD+ +GAI LE+ ++ E Q++ S+ A+ Sbjct: 3 AIEAEALRVSSLMSSRLCHDLAGVVGAISAGLEMSEDEDPEMASHAKQVVTESTDKALAI 62 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 +K RLA+G +G + + + + + + F A + ++ W E+ + + + + +LN+ Sbjct: 63 VKLARLAYGSSGGFEGDLDMNEAREAAKGFFAHAE-AELVWDLEEYAVPKWQGRAMLNVL 121 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +V ++PR +V+ S+ + G + + G + ++ ++ Sbjct: 122 IVMERAVPRS---PSTVRLSRVNGHLTASATGKKVKAKDPLLGAFSGQSDD-LEPKEMPA 177 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSAL 212 Y LLA R + D + ++ + Sbjct: 178 YLAYLLAQSGGARFDTHFVLDEELTVTLV 206 >gi|89069452|ref|ZP_01156802.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516] gi|89044933|gb|EAR51020.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516] Length = 198 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 12/202 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRL 64 + S + L+ SRICHD+ISP+GAI N LELL + + + LI S +A RL Sbjct: 1 MKMDSHGVSDLVASRICHDVISPLGAIGNGLELLTLANPDLPEAELALIGESVAAAQARL 60 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 +F R AFG D+ + ++ +V+ D +A + W + D R + + Sbjct: 61 QFFRFAFGSA--ADTPVAGREVVRVL-DAMAASGFARCRWEVAE-DPPRGLVRCAFLALL 116 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQIVDGNVESTIDSHDIQF 183 +L RG + +SV+D + +S+ G R PE + + G+ + + +QF Sbjct: 117 CVETALGRGAALRVSVRDGR----WSVVGEGPVRHRDPEVWAALAGGDP-GALTAAQVQF 171 Query: 184 YYVILLAHENKIRLLPEIIDDH 205 + R Sbjct: 172 MLLPPALAALGRRAEVTESGGA 193 >gi|312113704|ref|YP_004011300.1| hypothetical protein Rvan_0925 [Rhodomicrobium vannielii ATCC 17100] gi|311218833|gb|ADP70201.1| Protein of unknown function DUF2328 [Rhodomicrobium vannielii ATCC 17100] Length = 217 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65 L L AL+ S+ICHD+ IGAI+N LELL+E ED ++LI+ S+ +A +L Sbjct: 6 LDDTALAALISSKICHDLAGQIGAINNGLELLEEENDEDTRFYALELIQNSAKAAWAQLD 65 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F RLAFG + S+ +L+ + IEQV ++ KR ++ W ++ +E A++L+ L V Sbjct: 66 FNRLAFGVSSSLGALVPVQHIEQVARRYLENGKR-RLHWQANVPEIEKEHARLLMALLGV 124 Query: 126 AHASLPRGGKVTISVQDSKNENI-----FSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 + +LP GG + + SK + G AR PE ++ G++ TID Sbjct: 125 SINALPAGGDYYLGLSASKTRAGRSRFKLIILCRGRAARVPEGVAEVFAGDMTRTIDGRL 184 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNV 207 + YY LA E ++L + + Sbjct: 185 VIAYYATRLATEASLKLSALKEGEDIL 211 >gi|46200921|ref|ZP_00056203.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 205 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 8/191 (4%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L LLC+R+CHD+ SP+GA +ELL++ G + E + L+ S +A RLKF+R A Sbjct: 6 DTKLSELLCARLCHDLASPLGAASAGMELLED-GDDPETLALVSASMAAATARLKFLRAA 64 Query: 71 FGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 G + + LGD+ + + AV + + W+ ++ ++ E A++LLNL ++A + Sbjct: 65 LGPANDMPHTPKSLGDLIRAYLNG-AVTGGITLDWSSDRPEMDGETARLLLNLVLIARDA 123 Query: 130 LPRGGKVTISVQ--DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYV 186 LPRGG+++ + + + +G E ++D S Q ++ Sbjct: 124 LPRGGRISARCESSQGGGDAGLRVIASGEGLGLTAEARLVLLDDAPPSG--PRGAQAWFA 181 Query: 187 ILLAHENKIRL 197 + LA +++ Sbjct: 182 LHLARGKGLKI 192 >gi|83309426|ref|YP_419690.1| hypothetical protein amb0327 [Magnetospirillum magneticum AMB-1] gi|82944267|dbj|BAE49131.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 205 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 LLC+R+CHD+ SP+GA LELL++ G + E ++L+ S +A RLKF+R Sbjct: 6 DTKFSELLCARLCHDLASPLGAAAAGLELLED-GNDPETLELVSASMGAATARLKFLRAT 64 Query: 71 FGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 G + + LGD+ + AV + + W+ E+ ++ E ++ LNL ++A + Sbjct: 65 LGPANDMPHTQKSLGDLMRAYLSG-AVTGGITLDWSSERPEIDGETGRLRLNLVLIARDA 123 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGN---LARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 LPRGGK+ S ++ L++ + + E ++DG S Q + Sbjct: 124 LPRGGKILARCAGSGSDGEAGLRVTASGEGMGLTAEARLVLLDGAPPSG--PRGAQAGFA 181 Query: 187 ILLAHENKIRLLPEIIDDHNVVLS 210 + LAH N +++ +++ Sbjct: 182 LHLAHRNGLKIRLTPGAGEISIMA 205 >gi|218662514|ref|ZP_03518444.1| hypothetical protein RetlI_25280 [Rhizobium etli IE4771] Length = 100 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 49/83 (59%), Positives = 62/83 (74%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M+KN LS DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A Sbjct: 18 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 77 Query: 61 IIRLKFMRLAFGYTGSVDSLIGL 83 +RLKF RLAFG +GSV + I Sbjct: 78 SVRLKFARLAFGASGSVGASIDT 100 >gi|149202794|ref|ZP_01879766.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035] gi|149144076|gb|EDM32110.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035] Length = 199 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 7/203 (3%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65 + L AL+ SRICHD++SP+GAI N LEL+ G +E M LI S+ A+ R++ Sbjct: 1 MPQHTHALGALIASRICHDLVSPLGAIGNGLELMGLSGTMEGPEMALIAASAAQALARVR 60 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 RLAFG D + + + I + R+ ++ L R A+ILL + Sbjct: 61 LFRLAFGQA--EDDHVTRAEELRDILGTLHAGGRITLTLQITAP-LPRPMAQILLLGLLC 117 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +LP+GG++ +S + + LA + + + + F Sbjct: 118 VEQALPQGGQLAVSQTPGGWQI---VATAARLAPDVDLWRALCAEGPWPRPTPAQVHFQL 174 Query: 186 VILLAHENKIRLLPEIIDDHNVV 208 + L ++ D V Sbjct: 175 LHHCLAAQGATLQRQLTDTEFRV 197 >gi|89054929|ref|YP_510380.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1] gi|88864478|gb|ABD55355.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1] Length = 180 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 10/174 (5%) Query: 30 IGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 +GAI N +ELL+ G + + LIR + +A R++ RLAFG S + L + + Sbjct: 1 MGAIGNGVELLEMTGKADGPEVDLIRDAVRAAEARIRLFRLAFGGA-SSGQVTSLREAKT 59 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 V+E + RV V W D SR+ K+ L + + A +LP GG V I Sbjct: 60 VVEGYF-HQSRVAVVWMANS-DRSRQETKMALLMLLCAETALPMGGTVRIGP---DPTGH 114 Query: 149 FSLKINGNLARFPEKFTQIV---DGNVESTIDSHDIQFYYVILLAHENKIRLLP 199 + L+ G + ++ + + D+QF + A + L Sbjct: 115 WQLEATGPRLNMVDAVWDVLRTGTAPPDEPLRPADVQFPMLFQAAQSLGLTLNY 168 >gi|254449745|ref|ZP_05063182.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198264151|gb|EDY88421.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 176 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 9/177 (5%) Query: 30 IGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88 +GAI N +ELL G M L+ S +A ++KF+R+AFG D + G+I Sbjct: 1 MGAIGNGIELLGLAGVAAGPKMALVSESVENATAKIKFLRMAFGEAA-QDQTVSRGEILS 59 Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 +E +A R+ SW D R + L M +LP GG + I++ ++N Sbjct: 60 TLEA-MARGGRLSYSWNVA-GDPQRLEVRTALISVMCLETALPMGGDIEITL----DQNR 113 Query: 149 FSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 +++ + P+ + + G ++ + + + F + +A E L D Sbjct: 114 WTISAKHDRLTLDPDLWVPLSKGAYQNDLSASKVHFGLLPEMAIEAGRTLSLTHGVD 170 >gi|84687193|ref|ZP_01015074.1| hypothetical protein 1099457000248_RB2654_04526 [Maritimibacter alkaliphilus HTCC2654] gi|84664781|gb|EAQ11264.1| hypothetical protein RB2654_04526 [Rhodobacterales bacterium HTCC2654] Length = 198 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 12/197 (6%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKF 66 + DLVAL+ SRICHD++SP+GAI N +EL+ G E+ M L+ S ++A R++F Sbjct: 6 TAPAPDLVALVGSRICHDLVSPLGAIGNGIELMTLTGGEETPEMALVNESLVNARGRIRF 65 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126 R+AFG S +++ GD+ + + ++ + V W D++R AK+ L Sbjct: 66 FRIAFGAANS-GAVVRAGDLAEAVAG---IETKAVVEWRIP-GDMARTDAKLALLALNCL 120 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +++P GG++++ ++ + R ++DG T +I F + Sbjct: 121 ASAMPYGGRISV----ERDAGGLVVTGRAERFRIEVDDWALIDGR--GTATPANIHFALL 174 Query: 187 ILLAHENKIRLLPEIID 203 A ++ ++ Sbjct: 175 PEEAFAQGRQVTQAQLE 191 >gi|126737744|ref|ZP_01753474.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6] gi|126721137|gb|EBA17841.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6] Length = 163 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 9/164 (5%) Query: 46 EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105 + ++LI S ++A R++F R+AFG G + +G +I ++ D ++ R+ SWT Sbjct: 6 DGPELELISDSVLNANARIRFFRVAFGAAG--EQQMGRAEIISILAD-MSKAGRMSYSWT 62 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + SRE +++ + ++LP GG+VT+ +S+ G E Sbjct: 63 PLEGC-SREEVRMVFLALLCLESALPYGGQVTMLCSGQ----SWSITGEGTKLNLDESLW 117 Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 +DG + + I +QF + + A + R+ + + + Sbjct: 118 GHLDGSDDAAAITPALVQFAMLPVAAKQAGRRIQFDQTLEKITI 161 >gi|83591859|ref|YP_425611.1| hypothetical protein Rru_A0520 [Rhodospirillum rubrum ATCC 11170] gi|83574773|gb|ABC21324.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 9/203 (4%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 +DL +LC+R+CHD+ IGA++ L + + E + L+ S+ A +RLK + Sbjct: 27 EDLDLALMLCTRLCHDLAGSIGAVNTGAELLEEEGEAFDPETLALLADSARGAALRLKVL 86 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 R+A G L + + + +A R D ++L+NL MVA Sbjct: 87 RMAMGLVRGRQPT--LAEAAEGLGGLLAASGRRFALGDPAMGDPGAPTVQLLVNLAMVAA 144 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 P+ ++T+ + + + G + Q + G + D +Q + Sbjct: 145 DVWPKAAEITLGATEDG----YGVWARGAAGPPSASWDQALAGG-DDVPDPRTVQAWLTK 199 Query: 188 LLAHENKIRLLPEIIDDHNVVLS 210 LA + +L ++L+ Sbjct: 200 RLAARLGMAILIPSSQAGTLLLT 222 >gi|209965054|ref|YP_002297969.1| hypothetical protein RC1_1759 [Rhodospirillum centenum SW] gi|209958520|gb|ACI99156.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 212 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 16/213 (7%) Query: 7 FNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60 + S D V LL SRICHD++SP+GAI+N +EL+DE+ G E + LI S+ +A Sbjct: 1 MSPESPDFEPRAVELLVSRICHDLVSPVGAINNGVELIDEMGLGAGAEALTLIADSAEAA 60 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKIL 119 RL+ R AFG G D + +E + RV++ W + R K+L Sbjct: 61 ARRLRLFRFAFGAAGGQDG-LDPAQARLTLEGWF-RGGRVRIDWQADLPARPPRGLLKLL 118 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDS 178 L ++A +LP GG V + + + SL+ G A E+ + G + + Sbjct: 119 LIAALLADEALPAGGTVRVVREGAG----VSLQGTGRNAGLREETRAALAGEIAPADLSP 174 Query: 179 HDIQFYYVILLAHENKIR--LLPEIIDDHNVVL 209 I Y + + IR ++ E DD + L Sbjct: 175 RSILGYAALRFGRLHAIRIVVMAENADDIRISL 207 >gi|144897198|emb|CAM74062.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 217 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 13/216 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMS 59 M + N ++ L LLC+R+CHD+ P+GA EL + G + E + ++ S+ Sbjct: 1 MGSDHQNNTDTLMLAELLCARVCHDLAGPVGATAAGAELFQDLGGGDPETLAMVSTSAAG 60 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRE 114 A RL+ +R A G S+ GL + + E + + WT + Sbjct: 61 AAARLRLLRAALGPAASMPQ--GLSALRTMTEAHLNSLASTAAPTIACRWTDCPDQIDGP 118 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 RA++LLNL ++ +LPRGG + ++ D I + A + ++ + Sbjct: 119 RARLLLNLMLLGRDALPRGGALDFALTDGWPTVIAHGE---PAALADDVRAALLTDTAPT 175 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 Q +LA E R+ + + + Sbjct: 176 G--PKTAQATLTRMLAAEMGGRISVSVTARGLRLAA 209 >gi|218660684|ref|ZP_03516614.1| hypothetical protein RetlI_14387 [Rhizobium etli IE4771] Length = 76 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP 199 +++ + + F+L G + R P KF +I G +E ID+H IQ YY +LLA E + L Sbjct: 1 MENPEFDAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTLDH 60 Query: 200 EIIDDHNVVLSALL 213 D +V +A++ Sbjct: 61 SASADE-LVFTAVV 73 >gi|218461320|ref|ZP_03501411.1| hypothetical protein RetlK5_18197 [Rhizobium etli Kim 5] Length = 73 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 + F+L G + R P KF +I G +E ID+H IQ YY +LLA E + L D Sbjct: 4 DAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTLDHSASADE 63 Query: 206 NVVLSALL 213 +V +A++ Sbjct: 64 -LVFTAVV 70 >gi|73667278|ref|YP_303294.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake] gi|72394419|gb|AAZ68696.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake] Length = 210 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 91/195 (46%), Gaps = 11/195 (5%) Query: 16 ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L+ +R+ HD+ +GAI N +E L D+ G+ +++M L+ ++ + + K ++ A+ + Sbjct: 11 ELVSARLLHDLAGSVGAIVNYIECLSDDEGLCEDMMSLLSDAANDVMNKFKLLKQAYSIS 70 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130 G + I++++ K++ + W + E K+L N+ M+ + Sbjct: 71 DDNG---DFGVTKHNIKNYLKR-KKILLEWDVDVQLFDVELVEKVNKLLTNMVMILMYFM 126 Query: 131 PRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVIL 188 G KV +++ S + + + + I+D ++ + +++ +IQ ++++ Sbjct: 127 INGSKVKVTLSKSSDGGLLLEIVACAQKIEVHDSIKSILDRDISNRELNTKNIQVNFLMM 186 Query: 189 LAHENKIRLLPEIID 203 L ++ E+ + Sbjct: 187 LLDNYHAKMTYEVQE 201 >gi|148284384|ref|YP_001248474.1| hypothetical protein OTBS_0664 [Orientia tsutsugamushi str. Boryong] gi|146739823|emb|CAM79730.1| conserved hypothetical [Orientia tsutsugamushi str. Boryong] Length = 225 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 86/217 (39%), Gaps = 21/217 (9%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAII 62 ++++ L + +I HD +GAI N ++ + + I++ S + ++ Sbjct: 1 MNNIKLAQFISVKIFHDFAGGLGAISNGIKYCIDNQYQLNNKLYGLAFDTIKIGSTNLLV 60 Query: 63 RLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAV--DKRVQVSWTGE-----KI 109 +L+ R +G S +I V++D+ + ++ + + E Sbjct: 61 KLQLYRQMYGSASKSYSDNKLYHEANFDEIRAVLDDYFKALINTKINLVFKDEFFHVKGT 120 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ K+L+ L + A +L GG +T+ + +++ ++ G + E+ I+ Sbjct: 121 NIDISTGKLLMCLVISAQDALLHGGDITVKIYRKQDKTQINISAKGKSIKNNEEQNFILT 180 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + I ++ YYV L + + +D Sbjct: 181 ATDLSDDNITFFNVHAYYVYYLKKMVNASISCKHGED 217 >gi|269958531|ref|YP_003328318.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel] gi|269848360|gb|ACZ49004.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel] Length = 217 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 78/194 (40%), Gaps = 11/194 (5%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L +R+ HD+ +GA+ + +E L E + +++ + +S I R + +R A+ + Sbjct: 18 LSARLLHDLAGSVGAMVSHVECLVEDPGSESMLRSLEEASEEIIARFRLLRQAYSAS--- 74 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRG 133 + IE ++ Q+ W E E ++L + +++ + RG Sbjct: 75 EENSSFDKTRNNIEQYLQKKGVAQLFWEVEAQFADAELVERINRLLAHAALLSVMLMIRG 134 Query: 134 GKVTISVQDSKNENI--FSLKINGNLARFPEKFTQIV--DGNVESTIDSHDIQFYYVILL 189 ++ +SV D+ E +++ + +++ +++ ++Q Y++ LL Sbjct: 135 SEIAVSVVDAAEEGSVQLKVRLKADEVAMHRDIERVLVYKDTDTCQLNTRNVQAYFMSLL 194 Query: 190 AHENKIRLLPEIID 203 D Sbjct: 195 LVRYGATFHYNAYD 208 >gi|189183756|ref|YP_001937541.1| hypothetical protein OTT_0849 [Orientia tsutsugamushi str. Ikeda] gi|189180527|dbj|BAG40307.1| hypothetical protein OTT_0849 [Orientia tsutsugamushi str. Ikeda] Length = 225 Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 86/217 (39%), Gaps = 21/217 (9%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAII 62 ++++ L + +I HD +GAI N ++ + + I++ S + ++ Sbjct: 1 MNNIKLAQFISVKIFHDFAGGLGAISNGIKYCIDNQHQLNNKLYGLAFDTIKIGSTNLLV 60 Query: 63 RLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAV--DKRVQVSWTGE-----KI 109 +L+ R +G +I V++D+ + ++ + + E Sbjct: 61 KLQLYRQMYGSASKSYGDNKLYHEANFDEIRAVLDDYFKALINTKINLVFKDEFFHVKDT 120 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ K+L+ L + A +L GG +T+ + ++++ ++ G + E+ I+ Sbjct: 121 NIDISTGKLLICLVISAQDALLHGGDITVKIYRKQDKSQINILAKGKSIKNNEEQNFILT 180 Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + I ++ YYV L + E +D Sbjct: 181 ATDLSDDNITLFNVHAYYVYYLKKMVNASISCEHGED 217 >gi|254440242|ref|ZP_05053736.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307] gi|198255688|gb|EDY80002.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307] Length = 55 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRL 64 +L AL+ SRICHD+I+P+GAI N +ELL G+ M L+ S +A ++ Sbjct: 3 NLNALIGSRICHDLINPLGAIGNGIELLGLAGVAVGPEMALVSESVENATAKI 55 >gi|68171194|ref|ZP_00544600.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str. Sapulpa] gi|88658030|ref|YP_507163.1| hypothetical protein ECH_0343 [Ehrlichia chaffeensis str. Arkansas] gi|67999388|gb|EAM86031.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str. Sapulpa] gi|88599487|gb|ABD44956.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 210 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 89/195 (45%), Gaps = 11/195 (5%) Query: 16 ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L+ +R+ HD+ +GAI N +E L ++ + ++++ L+ ++ + + K ++ A+ + Sbjct: 11 ELVSARLLHDLAGSVGAIVNYIECLSEDESVSEDMVPLLSDAANDVMNKFKLLKQAYSIS 70 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130 E I++++ K++ + W E K+L+N+ M+ + Sbjct: 71 DDNG---DFNTTEHNIKNYLKR-KKIVLEWDINAQIFDVELVEKINKLLINVTMILMFFM 126 Query: 131 PRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVIL 188 G KV + + S N + + + E I+DG++ +++ ++Q ++++ Sbjct: 127 INGTKVKVVLSKSNNNDFLIEIIAFAQKIEIHESIQSILDGDMFNQELNTKNVQVNFLMM 186 Query: 189 LAHENKIRLLPEIID 203 L ++ EI D Sbjct: 187 LLKSYNAKMTYEIQD 201 >gi|57239385|ref|YP_180521.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str. Welgevonden] gi|58579353|ref|YP_197565.1| hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str. Welgevonden] gi|58617407|ref|YP_196606.1| hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str. Gardel] gi|57161464|emb|CAH58389.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str. Welgevonden] gi|58417019|emb|CAI28132.1| Hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str. Gardel] gi|58417979|emb|CAI27183.1| Hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str. Welgevonden] Length = 212 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 11/181 (6%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L+ +R+ HD+ +GAI N +E L D+ + +M L+ +S + + K ++ A+ + Sbjct: 11 ELISARLLHDLAGSVGAIVNYIECLGDDESLSGSMMPLLSDASNDVMNKFKLLKQAYSIS 70 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130 + IE+++ K+V + W E K+L N+ MV + Sbjct: 71 DDNGDFNST---KCNIENYLTR-KKVILEWNVNVQIFDAELIEKINKLLTNMVMVLMLFV 126 Query: 131 PRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVIL 188 G +V I + S + + N + E I++G++ S + + ++Q +++L Sbjct: 127 INGNRVKIMLSSMSDGHLLIEVIANAQIIEMHESIKSILNGDITSVELTTRNVQVSFLML 186 Query: 189 L 189 L Sbjct: 187 L 187 >gi|56417056|ref|YP_154130.1| hypothetical protein AM982 [Anaplasma marginale str. St. Maries] gi|222475422|ref|YP_002563839.1| hypothetical protein AMF_750 [Anaplasma marginale str. Florida] gi|254995235|ref|ZP_05277425.1| hypothetical protein AmarM_04610 [Anaplasma marginale str. Mississippi] gi|255003410|ref|ZP_05278374.1| hypothetical protein AmarPR_04090 [Anaplasma marginale str. Puerto Rico] gi|255004530|ref|ZP_05279331.1| hypothetical protein AmarV_04400 [Anaplasma marginale str. Virginia] gi|56388288|gb|AAV86875.1| hypothetical protein AM982 [Anaplasma marginale str. St. Maries] gi|222419560|gb|ACM49583.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 217 Score = 69.5 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 78/197 (39%), Gaps = 17/197 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L +R+ HD+ +GA+ + +E L E + ++ + +S I R + +R A+ Sbjct: 18 LSARLLHDLAGSVGAMVSYVECLVEDPESEGTLRSLEEASEEIIARFRLLRQAY---SLS 74 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRG 133 + + I ++ Q+ W E E ++L ++ +++ + RG Sbjct: 75 EDNASFDKTQSNIRQYLQKRGVAQLLWEVEAQFADAELVEKVNRLLAHIALLSVMLMVRG 134 Query: 134 GKVTISVQDSKNENIFSLKI--NGNLARFPEKFTQIVDGNVESTIDS-----HDIQFYYV 186 +V +SV D+ E L+ + +++ V ID+ +IQ Y++ Sbjct: 135 EEVAVSVVDAAEEGSVRLRAKLKADEVAMHRDIERVL---VYRDIDACQLNTRNIQAYFM 191 Query: 187 ILLAHENKIRLLPEIID 203 LL + D Sbjct: 192 SLLLMRYGATFCYDAYD 208 >gi|88607575|ref|YP_504825.1| hypothetical protein APH_0203 [Anaplasma phagocytophilum HZ] gi|88598638|gb|ABD44108.1| hypothetical protein APH_0203 [Anaplasma phagocytophilum HZ] Length = 206 Score = 64.9 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 85/203 (41%), Gaps = 3/203 (1%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 +L ++ +++ HD+ +G++ + +E + D++ + +++ I R + +R A Sbjct: 4 ELASMEAFAAKLLHDVAGSVGSVVSYIECFLDDPESDDIRVCLEEAAVEMISRFRLIRQA 63 Query: 71 FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 + + + IE+ ++ + + L + ++L+ + + + Sbjct: 64 YSASEDNSCFDTTREHIEKYLKKRGVPSFSLCIEGQFYDAKLVEQVNRLLVQAALFSAMA 123 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 + RG + +S+ +++ L ++ + ++ + +H++Q Y++ LL Sbjct: 124 MVRGKGMFVSISKTESMVAIRLVLDAEEISVHKDVESVLGNANACALTTHNVQAYFMTLL 183 Query: 190 AHENKIRLLPEIIDDHNVVLSAL 212 E L + + V+ AL Sbjct: 184 CKEYGATLRYDPENALVEVVLAL 206 >gi|254438575|ref|ZP_05052069.1| hypothetical protein OA307_3445 [Octadecabacter antarcticus 307] gi|198254021|gb|EDY78335.1| hypothetical protein OA307_3445 [Octadecabacter antarcticus 307] Length = 92 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 3/89 (3%) Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + L M +LP GG + I++ + + + L P+ + + G +S Sbjct: 1 MRTALLSMMCVETALPLGGDIEITLDQNNWQIT---ASHDRLTLDPDLWLPLNKGTYQSD 57 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + + + F + +AHE L D Sbjct: 58 LSAAQVHFGLLPEMAHEAGRTLTLTHGTD 86 >gi|171913123|ref|ZP_02928593.1| two-component hybrid sensor and regulator [Verrucomicrobium spinosum DSM 4136] Length = 1236 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 22/137 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + + I +++LL E +L I S+ ++ F R Sbjct: 875 IAHDLNNVLSPITMAIDLLKMSNDNPESQELYATIADSARRGADMVRQVLSFAR------ 928 Query: 75 GSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMV 125 G I + +IE++ D RV+ + + L + ++LLNL + Sbjct: 929 GMEGQRIQIQVKHLIREIEKITRDTFPKSIRVRTKIAPDLLALHGDPTQLHQVLLNLCVN 988 Query: 126 AHASLPRGGKVTISVQD 142 A +LP GG +TIS ++ Sbjct: 989 ARDALPDGGDITISARN 1005 >gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1151 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 14/133 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + +G I SL++L + + + LI+ S+ + ++ F R G Sbjct: 790 IAHDLNNSLGPILMSLDVLRMKFPDPDSRELLDLIQSSAQRSADMVRQVLSFGRGIEGRK 849 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129 +V L +IE+++ D + +++ WT + ++LLNL + A + Sbjct: 850 MAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGD--PTQLHQVLLNLCVNARDA 907 Query: 130 LPRGGKVTISVQD 142 +P+GG ++I+ ++ Sbjct: 908 MPQGGLLSITAEN 920 >gi|254945439|gb|ACT90637.1| AroS [arsenite-oxidising bacterium NT-26] Length = 489 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 31/220 (14%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQL-------IRLSSMS 59 L +L L S + H+I +P+G + NS++ L + G + L IR + Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNSIDTLKQHGANEAVRGTSLSLLERGLAGIRDVVQA 319 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 A+ + R +G L L D+ + IA +R ++W DL+ Sbjct: 320 ALATYRPDR-----SGRALVLRDLEDVRLLAGPQIA-GRRQTLTWMSNPADLTIPTLSGS 373 Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LLNL + A A+ G +++ + + + L + P+ T ++ Sbjct: 374 AVRQALLNLVLNASAAAGDNGAISVETRLQDDGSALILSVTDTGPGLPKAATGVL--TSP 431 Query: 174 STIDSHDIQ----FYYVILLAHENKIRLLPEIIDDHNVVL 209 + + + V + E + + + + Sbjct: 432 EPWPAAQLAGGLGLWMVRKMVDEAGGHISLGRREAEGLTI 471 >gi|196228679|ref|ZP_03127545.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226960|gb|EDY21464.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 916 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 14/133 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + + I S++LL + EV++ + S+ ++ F R G Sbjct: 555 IAHDLNNVLSPIVMSVDLLKMKTDDPACLEVLETVETSARRGADMVQQVLSFARGVEGQR 614 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129 V L ++++++ D + +++S W + ++LLNL + A + Sbjct: 615 IIVQPKHLLKEVQKIVADAFPKNIELKLSQKPDLWNVLGD--PTQLHQVLLNLCVNARDA 672 Query: 130 LPRGGKVTISVQD 142 +P GG++TI+ ++ Sbjct: 673 MPEGGRITIAAEN 685 >gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1544 Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFMRLAFGY 73 LL S I HD+ + + I S+ELL E+ ++E +Q I S+ A ++ + LAF Sbjct: 1177 LLASGIAHDMNNILTPIMMSMELLKEIVDDEEGFERIQTINKSTRRAKNLIQQL-LAF-A 1234 Query: 74 TGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFM 124 G + I + ++ +++ ++ V+ + + ++L+NL + Sbjct: 1235 RGKSEQQIPVNLRRLILELTNFMKETFPRSIQLSVNIPKNLPFILGDPTQIHQVLMNLCV 1294 Query: 125 VAHASLPRGGKVTISVQ 141 AH ++P GG+++IS + Sbjct: 1295 NAHDAMPDGGQLSISSE 1311 >gi|148658128|ref|YP_001278333.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148570238|gb|ABQ92383.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1039 Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 20/179 (11%) Query: 22 ICHDIISPIGAIHNSLEL-LDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 I HD + + I S +L L + + +Q I+ + A ++ + LAF Sbjct: 676 IAHDFNNILTVISGSADLALAMMPPDSPAYADVQTIQQGARRAANLVRQL-LAF--ARRQ 732 Query: 78 DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-----SRERAKILLNLFMVAH 127 D +VIE + + +R ++ W + ++++NL + A Sbjct: 733 PGHPQTVDANEVIEGMLPLVRRLIGEDIRFVWAPAPYPCVIIIDPHQFEQVVMNLIVNAR 792 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG +TI+ ++ + +++ + +H + Y+ Sbjct: 793 DAMPDGGALTITTSVTEMAAGDEDSAETPFVCI---TVEDTGVGMDAEVMAHIFEPYFT 848 >gi|302036482|ref|YP_003796804.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604546|emb|CBK40878.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 645 Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 17/209 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMR 68 L AL HD+ +P+G I +S LE E I E+ + I +RL F+R Sbjct: 435 LAALA-----HDLRNPLGVIRSSAQVVLEGPQEEPIRQEMARYIIDEVDKLSLRLHDFLR 489 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWT----GEKIDLSRERAK-ILLN 121 A + + + + + A R+++ I + E+ K L+N Sbjct: 490 YARQKPPDLKAEPAEAVVRAALRQWEAQGGHERIRIEQQFGNALPSIQVDPEQVKEALMN 549 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 L + A ++P GG +T++ + + + PE ++I + + + Sbjct: 550 LLINAREAMPEGGTLTLTTRAGPGNKVEIEVADTGSGIAPEHLSRIFEPFFTTKAYGTGL 609 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 V L +N L S Sbjct: 610 GLTNVKRLVEDNGGTLAVTSSQGMGTTFS 638 >gi|253698921|ref|YP_003020110.1| histidine kinase [Geobacter sp. M21] gi|251773771|gb|ACT16352.1| histidine kinase [Geobacter sp. M21] Length = 517 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 25/225 (11%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 + L ++ + + I H+I +P+ I ++ +L D+ +D +Q+I Sbjct: 276 ADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPDDGRVQIIGEVLEQVSRLDKTV 335 Query: 64 --LKFMRLAFGYTGSVDSL-IGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-S 112 L F FG + + + I +DKR++++ + + Sbjct: 336 NDLLF----FGKPTVAEPTCTDINAALKKILIFASQHRGGKNIDKRLELAENLPTVYVDP 391 Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ-IVD 169 ++ ++ LNLF+ A ++ GG +T+ + + ++ +++ P + + I Sbjct: 392 KQIQQVFLNLFLNAVQAMQAGGTLTVRSGLAKVEGIDMVQVRVTDTGQGIPPQILEKIFT 451 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ RL D + L Sbjct: 452 PFFTTKAQGTGLGLAISHRLVEQHGGRLSVVSQDGMGTTFTVELP 496 >gi|320104022|ref|YP_004179613.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319751304|gb|ADV63064.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 482 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 70/174 (40%), Gaps = 11/174 (6%) Query: 17 LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK----FMRL 69 LL + I H++ +P+ AI + +++L + E + LI + L+ F R Sbjct: 233 LLAAGIAHEVGNPLTAISSLIQMLRRKHDDPATAEKLDLIGNQVIRIQTILRELVGFSRP 292 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRER-AKILLNLFMV 125 A V + D + + + R+ + ++ +++ +++LNL M Sbjct: 293 ASTLETPVQLREVVADALSIAKYYHQFKNRIIETDLPDDLPRVRAVKDKLVQVVLNLTMN 352 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 A + +GG++ S + + + +G + R + + + ++H Sbjct: 353 ALDATGKGGRILWSARVVAEGDATGSQASGLVLRVDDDGPGVPQAEIPLLFEAH 406 >gi|149200167|ref|ZP_01877190.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155] gi|149136704|gb|EDM25134.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155] Length = 385 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 85/223 (38%), Gaps = 18/223 (8%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIR 63 + L+ +L + + H++ +P+ +++ L+LL+ E DE +L+ ++S Sbjct: 145 EQLRLLTMLAAGVAHELGNPLNSLNIHLQLLNRLMKQIEGDEGDEARELLGVASGEIERL 204 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEK--IDLSRER 115 +R G S + ++ ++ + + + +++ + + + + Sbjct: 205 DTIIRQFLGALRSDKPEMKAIELTSILREALQFMTKEIEDRNIELEISIPERTPPIEGDE 264 Query: 116 AKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 ++ N+ A ++P+GGK+ + + S G K +I + Sbjct: 265 TQLKQAFFNIMKNAIQAMPQGGKLALLCTGDDDFINISFADTGGGIDLN-KIGKIFNSYK 323 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V + E+ RL ++ +L+ L + Sbjct: 324 SDRHSGTGLGIFIVEKIIREHGGRLDISSAEEKGTILTISLPR 366 >gi|91202503|emb|CAJ72142.1| similar to two component histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 366 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 24/180 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSM 58 L S L +L L S + H+I +P+ A++ L LL D + I Sbjct: 137 LKSKTLSSLGTLASELAHEIKNPLNAMNLQLLLLKHEINDSYDNGNSPKNELLKIVTIVQ 196 Query: 59 SAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGE 107 + I RL F+ + + I +++ D IA + ++ V Sbjct: 197 NEINRLSSFVEECLQFAKTGKLSRSYASIREMLTDIIALLTPQAQLNGIQLKLDVMENIP 256 Query: 108 KIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +++ K +LN+ + + ++P GG++ +S K+E + + + G PE+F + Sbjct: 257 APYIDKDKIKQAILNILINSIEAMPDGGELHVSASGVKDEIVIACQDTGPG--IPEEFRE 314 >gi|197116682|ref|YP_002137109.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197086042|gb|ACH37313.1| sensor histidine kinase, HAMP domain-containing, nonconserved putative heme-binding site [Geobacter bemidjiensis Bem] Length = 494 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 25/225 (11%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 + L ++ + + I H+I +P+ I ++ +L D+ ED +Q+I Sbjct: 253 ADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRIQIIGEVLEQISRLDKTV 312 Query: 64 --LKFMRLAFGYTGSVDSL-IGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-S 112 L F FG + + + I ++KR+++S + + Sbjct: 313 NDLLF----FGKPTVAEPTCTDINSALKKILVFASQHRGGKNIEKRLELSENLPTVYVDP 368 Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ-IVD 169 ++ ++ LNLF+ A ++ GG +T+ + + ++ +++ P + + I Sbjct: 369 KQIQQVFLNLFLNAVQAMQAGGTLTVKSGLAKVEGVDMVQVRVTDTGQGIPPQILEKIFT 428 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ RL D + L Sbjct: 429 PFFTTKAQGTGLGLAISHRLIEQHGGRLSVVSQDGMGTTFTVELP 473 >gi|85705605|ref|ZP_01036703.1| sensor histidine kinase [Roseovarius sp. 217] gi|85670030|gb|EAQ24893.1| sensor histidine kinase [Roseovarius sp. 217] Length = 445 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 17/157 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 + L AL HD+ SP+ A+ +E+LDE + L+ L+F R Sbjct: 242 THMLAAL-----SHDLRSPLTAMRLRIEMLDETEDSVRLKALVEEMQAMVEATLEFAR-- 294 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 G + + + D+ ++ D + R ++ + R A + L NL Sbjct: 295 -GVAKAEPASV--VDLAALLGDLVCDVGGDRATLAQSPPLPVAVRAHALNRALRNLI--- 348 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ GG+ T+++ + + ++ G + Sbjct: 349 DNAVRYGGEATVTLTQAPGMAVINIADKGPGLPADQL 385 >gi|312112936|ref|YP_004010532.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218065|gb|ADP69433.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 952 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 28/219 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSA-IIRLKFMRL-AFGYTGSVD 78 I HD + + I + ELL DE + LI + SA R+ RL AF +D Sbjct: 593 IAHDFNNLLTPIMGAFELLQRRIAPDERLHALISNAMQSAESARVLVQRLLAFARRQHLD 652 Query: 79 SL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAK------ILLNLFMVAHASL 130 + + L + + D IA ++ E D L R R LLNL + ++ Sbjct: 653 TRAVDLKGLILGLHDLIARALGSRIDVRVEIPDGLPRARVDPSQFEVALLNLAVNGGDAM 712 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY----- 185 P GG +TIS E + + F G + + ++ +Y Sbjct: 713 PDGGTITISASAETIEEGTASDLA-PGRYIALAFEDTGIGMTREML-ARAVEPFYSTKGI 770 Query: 186 ---VIL-------LAHENKIRLLPEIIDDHNVVLSALLE 214 L LA ++ +L E + L Sbjct: 771 GKGTGLGLSMIHGLAAQSGGKLDLESEPGRGTRATLWLP 809 >gi|255261921|ref|ZP_05341263.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domain [Thalassiobium sp. R2A62] gi|255104256|gb|EET46930.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domain [Thalassiobium sp. R2A62] Length = 777 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 24/136 (17%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + I ++ELL+++ E ++LI + A R L F R A Sbjct: 396 HDFNNLLSVILGNMELLEDLTEGSEKLELIEE-AKQASFRGAALTRSMLNFARRA----D 450 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 I LG+ +E +++ V + W+ E A LLNL + A Sbjct: 451 LNPQEISLGEFVGRMETWMSRTIPVTIKVETSFSPDVWSITADVSGVESA--LLNLVINA 508 Query: 127 HASLPRGGKVTISVQD 142 ++P GG + I ++ Sbjct: 509 RDAMPDGGCLRIETEN 524 >gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 895 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 22/191 (11%) Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDF--I 94 ELLD ++ M+L+RL L +RL G + + L +E + F + Sbjct: 256 ELLDI--MQQNAMRLMRL----INDLLNLVRLDSGTLQLRPATLELRHYLEGICRSFYPM 309 Query: 95 AVDKRVQVSWTGEKIDLS-----RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 A ++R+ +W E R++ KILLNL A P GGK+ + + Sbjct: 310 ASERRLDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRARRDGEFLR 369 Query: 149 FSLKINGNLARFPEK------FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202 ++ +G E F Q + + I V LA + + + Sbjct: 370 IEVEDSGQGIAAEELASIFDRFWQA-ETSSNRRYQGVGIGLALVRDLARLHGGDVEASSV 428 Query: 203 DDHNVVLSALL 213 V+ L Sbjct: 429 QGEGTVMRVSL 439 >gi|118581752|ref|YP_903002.1| integral membrane sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504462|gb|ABL00945.1| integral membrane sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 480 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 21/216 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L S I H+I +P+ I +++ L E G + M+ + + R +M + F Sbjct: 252 LASGIAHEIRNPLNYISLAIDHLKEEMLPHCAGAQRAEMEELADKIKEEVRRANYMVVNF 311 Query: 72 GYTGS----VDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDLS----RERAK-I 118 G +L+ D+ V+ D + ++R+++ +E + Sbjct: 312 MSYGRPLKLRHALVPYSDVLAKALPVLHDRLT-EQRIRLEQRIPDDFPPLWVDQEMLRTC 370 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +LNL A ++P GG +T+ + ++ + G R E +I + Sbjct: 371 ILNLVGNAVQAMPGGGLITLGAERDHDQVRLTFSDQGKGIR-AEDLGKIFQPYFTTREVG 429 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ + + + LL Sbjct: 430 IGLGLAITERIVREHGGSIQVDSTLGSGTTFTLLLP 465 >gi|315185889|gb|EFU19654.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6578] Length = 616 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 76/210 (36%), Gaps = 26/210 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-----RLAFGYTGSVD 78 H+I +P+G I +E+L + E+ + + + I R++ RLA + Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEK-IQNEITRIQNFVSSLGRLA-DASRMER 453 Query: 79 SLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKID--LSRERAKI---LLNLFMVAHASL 130 + L ++ + ++ + +KR+ V + + + ++ L+NL + + +L Sbjct: 454 GTVDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVRIEGDAGRLKQLLINLVLNSVEAL 513 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQFY 184 GG + I ++ + + + S+ NG+ R F G + + Sbjct: 514 LHGGWIRIRLERKEGKILLSVSDNGHGIPKEIQDRIFRPFFSTKAGKQSTGLG-----LA 568 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + + + Sbjct: 569 ICEHIAKLHGGEIGFTSTPGEITTFTVTFP 598 >gi|307293763|ref|ZP_07573607.1| integral membrane sensor signal transduction histidine kinase [Sphingobium chlorophenolicum L-1] gi|306879914|gb|EFN11131.1| integral membrane sensor signal transduction histidine kinase [Sphingobium chlorophenolicum L-1] Length = 451 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 15/200 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 HD+ +P+ ++ E +++ G + + I + L R G + + L Sbjct: 257 HDLRTPLASLRVRAESVEDEGERARMSETIDEMNRMLEDILSLARA--GRSTEAQQKVDL 314 Query: 84 GD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISV 140 + V+EDF+ + V ++ + + R + + L NL ++ G + +SV Sbjct: 315 SALADAVVEDFLELGSPVDLADSERVVANVRPQQIRRALRNLI---ENAIVYGERAHVSV 371 Query: 141 QDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194 + + + +G E FT++ T + V + E+ Sbjct: 372 ERGEGAIRLVVADDGPGISEDRMEEMMEPFTRLEGSRNRET-GGAGLGLALVRAIMAEHG 430 Query: 195 IRLLPEIIDDHNVVLSALLE 214 L + S +L Sbjct: 431 GALKLANRPQGGLEASLVLP 450 >gi|116622221|ref|YP_824377.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225383|gb|ABJ84092.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 229 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 12/156 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYTGSVDSLIG 82 HD+ +P+ AIH E+L + + I + A IR++ + L + + Sbjct: 18 HDLRNPLSAIHGGAEILVRSNLSQPQVHRIARNMCCAAIRIRELLELCLDRSRCRTKKVE 77 Query: 83 LGDIEQVIEDFI------AVDKRVQVSWTGE---KIDLSRERA-KILLNLFMVAHASLPR 132 + D+ V+ + A + VQ+ +I + R + L+NL + A +P+ Sbjct: 78 IADLRAVVAAAVDRIAVSAEFQAVQIVQAIPERLRIAMDLNRIHRALVNLLVNALEVMPQ 137 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 GG + +S + ++ G PE ++ Sbjct: 138 GGTIHVSAIPEGRSVLIRVRDTGPGI-APEIRDRLF 172 >gi|196232631|ref|ZP_03131483.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196223393|gb|EDY17911.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 597 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 14/174 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAF 71 L S I HD+ + + I SL+LL + E++ + + A +K F R Sbjct: 213 LASGIAHDLNNMLSPILLSLDLLRNEVPEKSRELLSTVERCAQRAGEMVKQVLTFARGVE 272 Query: 72 GYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 G + + + +IE ++ I +++R+ + + D ++ ++LLNL + A Sbjct: 273 GERLPLQPKLLIREIENIVAGSFPRHITMERRIPRELSLIQGDPTQLH-QVLLNLCVNAR 331 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 ++P GG + I D + F+ G ++ ++ + + I +H I Sbjct: 332 DAMPDGGTLRIEADDFAVDAHFASMTPGARI---GRYVRLRVSDTGTGIPAHLI 382 >gi|167628799|ref|YP_001679298.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591539|gb|ABZ83287.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] Length = 466 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 18/224 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSMS 59 + +L + + + H++ +P+GAI L+L+ + +R S Sbjct: 239 EQARMASLGQVATWVAHEVRNPLGAIKGLLQLIQETIEERDPDGQSRRYCETAVRESERL 298 Query: 60 ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 L + RL + +I ++E +A V+ + R Sbjct: 299 ERFVGDLLAYSRLPQPTITEWPLANLVQEITALLEPELARQDAAIVTQIEPPGLIVRADR 358 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDGN 171 ++LLNL A A++P GG + + S E S+ + P ++ + Sbjct: 359 EQMHRLLLNLIQNALAAMPSGGDIHLRALSSPTEEGLSIIVEDEGIGLPPGAEHRLFEPF 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A+ + + E L + Sbjct: 419 FTTREKGSGLGLAICRDIANRHGGTIRAEGAPGGGARFIVNLPE 462 >gi|300691960|ref|YP_003752955.1| sensor protein, histidine kinase transcription regulator [Ralstonia solanacearum PSI07] gi|299079020|emb|CBJ51682.2| Putative sensor protein, histidine kinase transcription regulator [Ralstonia solanacearum PSI07] Length = 784 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMR-----L 69 I HD+ SP AI +EL + G + L+ LSS + A + R L Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALDHEALLARIRQLSSRTLELADAFIDLARMESQEL 626 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V ++ D + + ++ RV R + L+NL A Sbjct: 627 KLTEVDLVGLVLDAADEVWALANHHQIEVRVDADIEASVRGEPRMLVRALVNLVNNAIKF 686 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 PRG VT++V++ + S+ G + A+ + F ++ + V + Sbjct: 687 SPRGTTVTVAVREEADAFAVSVADQGVGMAAEDQAQLFQPFRRLHE-AVADAPSGSGLGL 745 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + H + L + Sbjct: 746 VFVKTVVERHGGRIAVQSAPGHGATFTLWLPR 777 >gi|254465743|ref|ZP_05079154.1| sensor histidine kinase [Rhodobacterales bacterium Y4I] gi|206686651|gb|EDZ47133.1| sensor histidine kinase [Rhodobacterales bacterium Y4I] Length = 339 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 22/211 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ A+ +L LL+ + ++++ R S L F R G Sbjct: 131 HDLRNPLSAVGAALRLLENEPQSAKALEILALGRQSVTRMSSLINDILDFARARLGNGVE 190 Query: 77 VDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +D D+ V+ + + R + S+ A+++ NL A Sbjct: 191 IDHAEKT-DLRPVLSQTVEEIRLANPGTELREEYSFQDPLGCDPERMAQLVSNLLSNAVT 249 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVI 187 G VT++ +D + I S+ +G A P E ++ + + + + + Sbjct: 250 HGTPGKPVTVTARDDGGDFILSVTNSG--APIPAETMGRLFEPFTRAEMRASQNGLGLGL 307 Query: 188 LLAHE---NKIRLLPEIIDDHNVVLSALLEK 215 +A + LL D+ V + + + Sbjct: 308 FIAQQIAKGHGGLLTAQSDEQTTVFTLRMPR 338 >gi|253701288|ref|YP_003022477.1| histidine kinase [Geobacter sp. M21] gi|251776138|gb|ACT18719.1| histidine kinase [Geobacter sp. M21] Length = 490 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 23/216 (10%) Query: 17 LLCSRICHDIISPIGAIH--NSL---ELLDEVGIEDEVMQLIRLSSMS---AIIRLKFMR 68 LL + + H+I +P+ AI + + EL + D + ++ S L + R Sbjct: 273 LLAAGMAHEIGTPLAAIMGYSGILSEELAGDPEKSDYLRRITEESKRIDRIVRGLLDYAR 332 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERA------KILL 120 GS I + + + + + + +++ + L R A ++L+ Sbjct: 333 ----PKGSQREEIEVLPLLEKVVELLEAQGALKLLEVTVEAEPSLPRLHADPYQLEQLLI 388 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDS 178 NL M A ++PRGGK+ + + G PE + D + Sbjct: 389 NLIMNAKDAMPRGGKLQLKGLSVGGGVAIEVADTGEGM-PPEHLPLVFDPFFTTKEPGKG 447 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A L + L Sbjct: 448 TGLGLAIAARIAESCGGSLTVQSELGEGSRFRLTLP 483 >gi|307718036|ref|YP_003873568.1| sensory histidine kinase in two-component regulatory system with AtoC [Spirochaeta thermophila DSM 6192] gi|306531761|gb|ADN01295.1| sensory histidine kinase in two-component regulatory system with AtoC [Spirochaeta thermophila DSM 6192] Length = 616 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 76/210 (36%), Gaps = 26/210 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-----RLAFGYTGSVD 78 H+I +P+G I +E+L + E+ + + + I R++ RLA + Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEK-IQNEITRIQNFVSSLGRLA-DASRMEW 453 Query: 79 SLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKID--LSRERAKI---LLNLFMVAHASL 130 + L ++ + ++ + +KR+ V + + + ++ L+NL + + +L Sbjct: 454 GTVDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVKIEGDAGRLKQLLINLVLNSVEAL 513 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQFY 184 GG + I ++ + + + S+ NG+ R F G + + Sbjct: 514 LHGGWIRIRLERKEGKIVLSVSDNGHGIPKEIQDRIFRPFFSTKAGKQSTGLG-----LA 568 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + + + Sbjct: 569 ICEHIAKLHGGEIGFTSTPGEITTFTVTFP 598 >gi|322420752|ref|YP_004199975.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127139|gb|ADW14699.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 672 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 28/172 (16%) Query: 24 HDIISPIGAIHNSLELLDEVG----IEDEVMQLIR--LSSMSAIIR--------LKF--- 66 H++ +P+ I ++++L I+ E+M+ I S SA IR ++F Sbjct: 446 HELNNPLAGILGAIQMLRGSALAHPIDPELMEGIDVLESIESAAIRCQKIVEDLVRFTTQ 505 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL---LNLF 123 R F L +I + F +V++ E + + K+L +NL Sbjct: 506 ARCNFSEMDINQVLKDTMEI--MAGPFGEQKIKVKLHLDPEVPQIDGDFVKLLEVYVNLL 563 Query: 124 MVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDG 170 A ++LP GG++ IS + + ++ NG P+ +I D Sbjct: 564 QNAKSALPNGGRIDISTSLVKKYGEQLQVAVVIRDNGCGI-PPQNLAKIFDP 614 >gi|78222275|ref|YP_384022.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193530|gb|ABB31297.1| histidine kinase [Geobacter metallireducens GS-15] Length = 673 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 29/228 (12%) Query: 9 LSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI- 61 + + L +L + + H+I +P+ I + ELL ED E + I + Sbjct: 438 VRAAKLADIGMLAAGVAHEINNPLAIIRGNTELLQMAIPEDDPSREEVDTIAQQTGRVER 497 Query: 62 ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEK 108 LKF R +G ++ +++++ + R + Sbjct: 498 IVGSLLKFAR-------QQKKELGTVEVNRLLDEILKQVGHQIPLAGIDIRRDYAADIPL 550 Query: 109 IDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQ 166 ++ ++ + + NL + A ++ GG +T+ ++ + A PE Sbjct: 551 LEGDGDQLRQVFTNLILNAIQAMKEGGTLTVGTSRDSEAGTCTVAVEDTGAGIPPENLRN 610 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + D + + ++ + E +L Sbjct: 611 IFSPFFTTRNDGTGLGLAVSYGIVRDHGGNIQVESTAGTGSTFRVVLP 658 >gi|299067043|emb|CBJ38238.1| Putative sensor protein, histidine kinase transcription regulator [Ralstonia solanacearum CMR15] Length = 784 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMR-----L 69 I HD+ SP AI +EL + G + L+ LSS + A + R L Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALDHAALLARIQQLSSRTLELADAFIDLARVESQEL 626 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V ++ D + + ++ RV R + L+NL A Sbjct: 627 KLTDVDLVGLVLDAADEVWALANHHQIEVRVDAEIEASVRGEPRMLVRALVNLVNNAIKF 686 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 PRG VT++V++ + S+ G + A+ + F ++ + + + Sbjct: 687 SPRGSTVTVAVREDADSFAVSVADQGVGIEAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 745 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + + H + L + Sbjct: 746 VFVKTVVERHGGRIAVQSVPGHGATFTMWLPR 777 >gi|153003895|ref|YP_001378220.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027468|gb|ABS25236.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 322 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 4/134 (2%) Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISV 140 + D V+ A + RV++ W G+ + + L+NL A + PRGG+V + V Sbjct: 180 VADALAVLSAR-ADEARVRLVWRGDATVEADPLRLEEALVNLVANAIEATPRGGEVVVEV 238 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE 200 + +++ G R PE ++ + D + E+ L E Sbjct: 239 LQQGDSAEIAVRDTGRGMR-PETLRRVGTPFFTTREDGTGLGVALARSAFAEHGGSLRYE 297 Query: 201 IIDDHNVVLSALLE 214 + A L Sbjct: 298 SAPGKGTTVRATLP 311 >gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 891 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 38/194 (19%) Query: 22 ICHDIISPIGAIHNSLEL--LDEVGIED-EVMQLIRLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + +G I +++L L +D E+++ + +S+ +K F R G Sbjct: 529 IAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETVSVSARRGADMVKQVLSFARGLEGQR 588 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129 V + L +++++ D V ++ W+ + ++LLNL + A + Sbjct: 589 TLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGD--PTQLHQVLLNLCVNARDA 646 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 +P+GG++T+ N R + F + E+ H + L Sbjct: 647 MPQGGRLTL---------------NACNQRIDDHFAAMH---PEARPGPHVV------LE 682 Query: 190 AHENKIRLLPEIID 203 ++ + P++I+ Sbjct: 683 VADSGTGMTPDVIE 696 >gi|116251644|ref|YP_767482.1| nitrogen fixation two component sensor/regulator fusion transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115256292|emb|CAK07373.1| putative nitrogen fixation two component sensor/regulator fusion transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 639 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 10/139 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--SSMSAIIRLKFMRLAFG-----YT 74 + HD + + I +LE+L+ E + L+R S+ RL LAFG Sbjct: 273 LAHDFNNLLAVIIGNLEMLEARLAEPGQLSLLREAQSAADDGARLTSQLLAFGRRQALAP 332 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 +D LG+ +++ + ++ G ++ ++A++ LLNL + A ++P Sbjct: 333 TVLDVGALLGEFSDLVQRTLGDSVELRTIIPGRRLSAMADKAQLQSALLNLSINARDAMP 392 Query: 132 RGGKVTISVQDSKNENIFS 150 GG++TI + + + + Sbjct: 393 AGGRLTIEISGVEIDADYV 411 >gi|153006251|ref|YP_001380576.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029824|gb|ABS27592.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 573 Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIRLSSMSAIIRL-KFM 67 + R+ H+I +P+ I S+E L + DE + I + +F Sbjct: 360 VARRLAHEIKNPLTPIAMSVETLRDAHARARPDFGEIFDEGTRAIGEEVRRLKRIVDEFS 419 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERA-KILLNL 122 R A + ++ V+ F + V +V + R++ ++LLNL Sbjct: 420 RFARLPAPERTPVAPDELVQSVLALFPSAPAGVVVAREVEAGLPAVLADRDQVVQVLLNL 479 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A ++P GG + ++ + + FS+ G R PE ++ + + + Sbjct: 480 VRNALDAMPGGGTLRVAARGEGSAVAFSVSDTGPGVR-PEDRPRVFEPYFTTKEGGTGLG 538 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A E+ L + L Sbjct: 539 LAIAQRIAEEHGGTLELRSAPGEGATFTLTLP 570 >gi|260576026|ref|ZP_05844020.1| histidine kinase [Rhodobacter sp. SW2] gi|259021725|gb|EEW25027.1| histidine kinase [Rhodobacter sp. SW2] Length = 461 Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 17/157 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 + L AL HD+ SP+ A+ +E+LDE + + L+ L+F R Sbjct: 258 THMLAAL-----SHDLRSPLTAMRLRIEMLDETEDSERLKALVEEMQAMVEATLEFAR-- 310 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 G + + D+ ++ D + +R ++ + R A + L NL Sbjct: 311 -GVARAEPAAE--VDLAVLLADLVNDVGGERANLAPSSPLPITVRPHALNRALRNLI--- 364 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++ GG + + + I ++ G + Sbjct: 365 DNAVRYGGVAMVKLDRTPGLAIITIADKGQGLPEDQL 401 >gi|87199632|ref|YP_496889.1| PAS/PAC sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87135313|gb|ABD26055.1| PAS/PAC sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 608 Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 25/218 (11%) Query: 18 LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLS-------SMSAIIRLKF 66 + + + H++ P+ AI N S LL + G ++ ++++R + ++ A ++ Sbjct: 386 MATALAHELNQPLTAIANYVLTSATLLADPG--EDTIEIVREALEEAGQEAVRAGAIVQR 443 Query: 67 MRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKID----LSRERAK- 117 +R AF G +D I I + + V V + + + + + Sbjct: 444 LR-AFVSRGELDRTIESPAILAAETLALSGLAGRRRHVSVEVAVPRTLGEVLVDKIQIQQ 502 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 +LLNL A +L G++ + ++ + F+++ +G PE + + V + Sbjct: 503 VLLNLVRNAFEALEGQGQIRVGAREIAGGMLQFTIEDDGPGI-DPEHQADLFEPFVSTKE 561 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I + + +L E+ +D + Sbjct: 562 NGMGIGLAICRTIVESHGGKLWHEMRNDGGTAFHFTIP 599 >gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 642 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 22/170 (12%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAI----IRL 64 + +A+L H++ +P+ I +ELL D+ + E ++++ S + L Sbjct: 407 EFLAMLA----HELRNPLAPIRTGIELLRIAADDPEVLQETIEVMDQQSRQLVTLVDDLL 462 Query: 65 KFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEKIDL-----SRERA 116 R+A G LI L D+ + D + L SR Sbjct: 463 DVSRIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELPDCPLQVQGDSRRLV 522 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +++ NL A PRGG+V + VQ N +++ G PE + Sbjct: 523 QVVSNLLNNAAKYTPRGGRVDLIVQPEPNRIGIAIRDTGIG--IPEHMRE 570 >gi|220909779|ref|YP_002485090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866390|gb|ACL46729.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 654 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 35/182 (19%) Query: 18 LCSRICHD---IISPI-GAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKFMRL 69 L S I HD +++PI A L LL +EDE +++LI S+ +K + L Sbjct: 289 LSSGIAHDFNNLLTPILSATQ--LMLLQLPDLEDEYAQELLKLIESSARRGGDLVKQI-L 345 Query: 70 AFGYTGSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KIL 119 AF G L+ L ++ QV ++++ + L ++L Sbjct: 346 AF-ARGVEGKLVPLQVKHLLAEMAQVARQTFPKSISIRLNLATADLYLVAADTTQLHQVL 404 Query: 120 LNLFMVAHASLPRGGKVTISVQ-------------DSKNENIFSLKINGNLARFPEKFTQ 166 +NL + A ++P GG +TIS + +++ L + P + + Sbjct: 405 MNLCVNARDAMPEGGILTISAENKLLDEAYTRIHREAQTGPYVVLTVADTGVGIPPELLE 464 Query: 167 IV 168 + Sbjct: 465 HI 466 >gi|39996594|ref|NP_952545.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39983475|gb|AAR34868.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|307634854|gb|ADI84333.2| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 550 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 25/228 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-- 65 S L A+ L +RI H+I +P+ AI S +L+ + G + + + + RL Sbjct: 318 KSDRLAAIGELSARIAHEIRNPLAAISGSTQLIAQGGAVSDPDRRLFDIVLRETDRLNGL 377 Query: 66 ---FMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRE 114 F LA+ + + + + + D+R + V T + + Sbjct: 378 ISDF--LAYARPNQPEPRPVDFHSLVAELAALVTSDERFEGVVIDNRVDSTFRPLLDPDQ 435 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFPEK-FTQ 166 ++L NL A ++P GG +T+ S + + + E + Sbjct: 436 FRQVLWNLMGNAAGAMPDGGTITVEAGQSDEIRGGGQRRITYRISVADTGLGMDEATVAR 495 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + V + + R+ E + L Sbjct: 496 IFEPFFTTKSTGTGLGLATVHRIVEAHGGRIAVESTPGKGTMFVIFLP 543 >gi|39995881|ref|NP_951832.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982645|gb|AAR34105.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|298504895|gb|ADI83618.1| sensor histidine kinase, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 674 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 29/228 (12%) Query: 9 LSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAI- 61 + + L +L + + H+I +P+ I + ELL + E + I Sbjct: 439 VRAAKLADIGMLAAGVAHEINNPMAIIRGNAELLQMALPDEDPNREEVDTIAQQVGRVER 498 Query: 62 ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEK 108 LKF R +G + +++D + R + Sbjct: 499 IIGSLLKFAR-------QQQRRLGTVSLPPLLDDILKQMGHQVPLTRIEIRKAYAVDLPP 551 Query: 109 IDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQ 166 + ++ + + NL + A ++P GG +T++ + ++ ++ PE + Sbjct: 552 LAGDPDQLRQVFTNLVLNAIQAMPDGGSLTVATARDEEAGTCTVSVSDTGRGIAPENLKR 611 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + ++ +L E + +L Sbjct: 612 IFSPFFTTKSEGTGLGLSVSYGIVKDHGGNILVESTEGEGTTFRVVLP 659 >gi|86139705|ref|ZP_01058272.1| sensor histidine kinase [Roseobacter sp. MED193] gi|85823596|gb|EAQ43804.1| sensor histidine kinase [Roseobacter sp. MED193] Length = 488 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82 HD+ SP+ A+ EL+DE D ++ + L F R G TGS + + Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 L + + +A S + L NL ++ GG +S Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379 Query: 143 SKNENIFSLKINGNLARFPEK 163 + + ++ NG + Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400 >gi|322417861|ref|YP_004197084.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124248|gb|ADW11808.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 493 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 82/226 (36%), Gaps = 27/226 (11%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--- 65 + L ++ + + I H+I +P+ I ++ +L + ++ LI + I RL Sbjct: 253 ADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRALIIGEVLEQISRLDKTV 312 Query: 66 ----FMRLAFG-YTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-S 112 F FG T + + + + I ++K+++++ + + Sbjct: 313 NDLLF----FGKPTVAEPACTDINSALKKILIFASQHRGGKNIEKKLELAEDLPPVYVDP 368 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ ++ LNLF+ A ++ GG +T++ D + + G P+ +I Sbjct: 369 KQIQQVFLNLFLNAVQAMQSGGTLTVTSCLAEIDGMDMVQVRVTDTGQGI-PPQILEKIF 427 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ RL D + L Sbjct: 428 TPFFTTKAQGTGLGLAISHRLIEQHGGRLSCVSQDGVGTTFTVELP 473 >gi|114762577|ref|ZP_01442021.1| sensor histidine kinase [Pelagibaca bermudensis HTCC2601] gi|114544832|gb|EAU47837.1| sensor histidine kinase [Roseovarius sp. HTCC2601] Length = 488 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82 HD+ SP+ A+ EL+DE D ++ + L F R G TGS + + Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 L + + +A S + L NL ++ GG +S Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379 Query: 143 SKNENIFSLKINGNLARFPEK 163 + + ++ NG + Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400 >gi|315186284|gb|EFU20045.1| signal transduction histidine kinase, nitrogen specific, NtrB [Spirochaeta thermophila DSM 6578] Length = 388 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 26/223 (11%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAII 62 L +L L + + H+I +P+GAI L+L++ + + + +I+ Sbjct: 154 LASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPYVGVIKEEIERLNR 213 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSR 113 + A + + ++ ++ + + VD R+ + L R Sbjct: 214 IVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRIPED--IPSLSLDR 271 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGN 171 K LLNL A ++P GG +T+ Q S G PE + I + Sbjct: 272 RYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVG--IPEHLKEKIFEPY 329 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E+ + + + + L Sbjct: 330 FTTKETGSGLGLTLVYKIVQEHGGEIEVQSAEGKGTTFTLLFP 372 >gi|171914219|ref|ZP_02929689.1| histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 416 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 19/206 (9%) Query: 24 HDIISPIGAIHN---SLEL-LDEVGIEDEVM----QLIRLSSMSAIIRLKFMRLAFGYTG 75 H++ +P+ I LEL L+ G ED + + IR L+ +R +G Sbjct: 210 HEMGTPLSTIALVSRELELELEATGAEDADLVQMSRTIRQEVERCRAILERLR-PLDTSG 268 Query: 76 SVDSLIGLGDIEQVIED--FIAVDKRVQVSWTG-EKIDLSRERAK-ILLNLFMVAHASLP 131 + + L ++E + + RV+ W + + L ++ + L NL A + Sbjct: 269 AREPFT-LEELEGSLSASLGMEDRARVRFHWAPKQTVLLPKDAVREALANLVRNALQAAS 327 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD---IQFYYVIL 188 V IS F ++ +G P + +T + + V L Sbjct: 328 VPSIVEISATTEAGTIRFEVRDHGPG--LPAGMRHHLGEPFVTTKSPGQGMGLGLHLVRL 385 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 LAH+ L D +L Sbjct: 386 LAHQMGGNLTATPADGGGERFVLVLP 411 >gi|294055699|ref|YP_003549357.1| GAF sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293615032|gb|ADE55187.1| GAF sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 563 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 20/158 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR-LAF 71 +L + I H+I +P+ I + LD E + +I ++ R L+F Sbjct: 353 MLAAEIAHEIRNPLTVIKLLFDSLDLQFIEGDARQTDVTVIGDKLNHLEEIVE--RVLSF 410 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEK----IDLSRERAK-ILL 120 G + + + D+ ++ ED + +++++ + +++++ + + ++L Sbjct: 411 G--RNREGMNARYDLNRLTEDTLRLVRLKLHQQKIEIGYDPTPKGLYVEVNKGQIQQVML 468 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 NL + A +P GG++ IS ++ F++ G Sbjct: 469 NLILNATQVMPNGGRIHISTTENNGHANFTITDTGPGM 506 >gi|115373515|ref|ZP_01460812.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115369521|gb|EAU68459.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 471 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 22/215 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S + H+I +P+G I +LL+ G ++E ++ IR A +F+ Y+ Sbjct: 261 LASAVAHEIRNPLGVILAEAKLLELSGADEESVRAIRDQVARAS---RFVEDLLHYSRPR 317 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQ-------------VSWTGEKIDLSRERAKILLNLFM 124 S + D+EQV+ ++ ++ + W + L ++ N + Sbjct: 318 PSRMQEWDLEQVVAGAVSRARQAFGDAAPEVSLGLEPLRWDVDGEALGDVVVNLVTN-AL 376 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHD- 180 +A ++P+ G+V ++ + ++ NG A P F V G Sbjct: 377 IAVETIPQ-GRVQVTQRRVAEGVRIEVEDNGPGVPEALLPRLFEPFVTGRGRDARHPGTG 435 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L LL + Sbjct: 436 LGLALCRKWVQRHGGTLTHARSATGGARFVILLPR 470 >gi|189426123|ref|YP_001953300.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422382|gb|ACD96780.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 378 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 17/214 (7%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL--KFM 67 ++ A+L H++ +P+ ++ + E+L + G I++ + R+ +F+ Sbjct: 167 EMAAVLA----HEVRNPLASLRGTAEILRDDFRPGTPKHEFVEIQIKETERLNRVVEEFL 222 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--DLSRER-----AKILL 120 R+A G + + ++E ++ +R +V+ E DL+ + L Sbjct: 223 RMARQQPGELQRCVVAEELETIVTLTSNEARRRKVTLQLEAANRDLAVNADGEKLRQAFL 282 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 N+ + A + P GG+VTI+VQ + + +G E +I + + D Sbjct: 283 NIILNALQATPEGGRVTIAVQPQQQNCEIRISDSGPGIN-DEIRQRIFEPFFTTKPDGTG 341 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L E + L Sbjct: 342 LGLAVTKKIIEAHGGSLSVESAAGSGTTMVVQLP 375 >gi|317403713|gb|EFV84199.1| sensor protein [Achromobacter xylosoxidans C54] Length = 441 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 27/177 (15%) Query: 2 AKNICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED-------E 48 + FN + A L R I HD+ +PI + E +D+ D E Sbjct: 214 QASAAFNAMQDRIAAHLAERMQILGAISHDLQTPITRMKLRSEFMDDSADRDKLAHDLQE 273 Query: 49 VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGE 107 V QL+R L + R A G + I L ++ ++ D+ + K V + Sbjct: 274 VEQLVRDG-------LAYARSA-GAATEPPARIDLDAFLDSLVCDYTDIGKPVTLQGHCP 325 Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +R RA +IL NL +L GG + + +++ + S+++ PE Sbjct: 326 GPWQTRPRALRRILGNLI---DNALKFGGAAEVLIGPAEDGHGVSIRVLDRGPGIPE 379 >gi|115526551|ref|YP_783462.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115520498|gb|ABJ08482.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 455 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 16/176 (9%) Query: 13 DLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 L +L R + HD+ SPI A+ E++D+ + ++ + L F Sbjct: 244 RLARMLGERTRMLAALGHDLRSPITALRVRAEMVDDAENRERMIATLDEMQQMVEATLAF 303 Query: 67 MRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 R G + + L + + ++ + + L R + L + Sbjct: 304 AR---GVSTDQPTEPVDLAAMLSELAAELSAIGPPIRITSATPVVLPLRRVPLRRALRNI 360 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVEST 175 + GG + ++ +E ++ G +LAR E F ++ T Sbjct: 361 LENAQRYGGGGEVRIEHDNDEARVVIEDRGPGMPDSDLARVFEPFVRLETSRSRET 416 >gi|196232791|ref|ZP_03131642.1| response regulator receiver sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223251|gb|EDY17770.1| response regulator receiver sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 593 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 9/150 (6%) Query: 18 LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAF 71 L S I HD+ + + I SL+LL E++ + + A +K F R Sbjct: 212 LASGIAHDLNNMLSPILLSLDLLKVGLPAASWELLGTVETCAQRAASMVKQVLTFARGVE 271 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128 G ++ + +IE+++ +++ G+ + + ++ LLNL + A Sbjct: 272 GERLPLEPKYLIREIEKIVAGTFPRQIKLETRIAGDLPPIKGDSTQLQQVLLNLSLNARD 331 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++P GG + I + + +++ G Sbjct: 332 AMPDGGTLRIEADLFEVDELYAAANPGTRI 361 >gi|17545794|ref|NP_519196.1| two-component system sensor histidine kinase transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428088|emb|CAD14777.1| probable two-component system sensor histidine kinase transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 784 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMR-----L 69 I HD+ SP AI +EL + G L+ LSS + A + R L Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALGHEALLARIQQLSSRTLELADAFIDLARVESQEL 626 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V ++ D + + ++ RV R + L+NL A Sbjct: 627 KLTDVDLVGLVLDAADEVWALANHHQIEVRVDADLEASVRGEPRMLVRALVNLVNNAIKF 686 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 PRG VT++V+ + S+ G + A+ + F ++ + V + Sbjct: 687 SPRGTTVTVAVRGDADSFAVSVADQGVGIAAEDQAQLFQPFRRLHE-AVADAPSGSGLGL 745 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + H + L + Sbjct: 746 VFVKTVVERHGGRIAVRSVPGHGATFTLWLPR 777 >gi|156743609|ref|YP_001433738.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234937|gb|ABU59720.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1034 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 26/179 (14%) Query: 24 HDI------ISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 HD IS G+ +L L +Q I+ S+ A ++ + L F Sbjct: 675 HDFNNILTVIS--GSADLALTTLPSDSPAYPDIQAIQQSARRATHLVRQL-LTF--ARRQ 729 Query: 78 DSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAH 127 S D+ +I+ + + + ++++W + ++L+NL + A Sbjct: 730 PSHPQTIDVNALIDGMVPLILRLIGEDIRLTWMPAPHPCPIRIDPHQFEQVLMNLIVNAR 789 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG + I+ S+ + + R Q + + +H + Y+ Sbjct: 790 DAMPEGGALVIAT--SQTAPTGDIVVETPYIRIS---VQDTGVGIPVEVKAHIFEPYFT 843 >gi|220918579|ref|YP_002493883.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956433|gb|ACL66817.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 581 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 24/216 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRL---- 64 + R+ H+I +P+ I S+E L E + Q I + Sbjct: 359 VARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEGTQAIGEEVRRLKRIVDEFS 418 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA-KI 118 +F RL S + ++ + V+ ++ + R++ ++ Sbjct: 419 RFARL----PAPERSEVPAEELASAVLALFPAAPAGVEVERAIAPDLPAVLADRDQVMQV 474 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 LLNL A ++P GG++ + + + F + +G P ++ + + Sbjct: 475 LLNLVRNALDAMPSGGRLRLVARSDGDAVAFEVSDSGAGI-APADLERVFEPYFTTKPGG 533 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A E+ L + L Sbjct: 534 TGLGLAIARRIAEEHGGSLEAASPPGAGATFTLRLP 569 >gi|84503162|ref|ZP_01001247.1| sensor histidine kinase [Oceanicola batsensis HTCC2597] gi|159046312|ref|YP_001541984.1| integral membrane sensor signal transduction histidine kinase [Dinoroseobacter shibae DFL 12] gi|159046587|ref|YP_001542257.1| integral membrane sensor signal transduction histidine kinase [Dinoroseobacter shibae DFL 12] gi|84388403|gb|EAQ01352.1| sensor histidine kinase [Oceanicola batsensis HTCC2597] gi|157914071|gb|ABV95503.1| two component integral membrane sensor signal transduction histidine kinase [Dinoroseobacter shibae DFL 12] gi|157914346|gb|ABV95776.1| two component integral membrane sensor signal transduction histidine kinase [Dinoroseobacter shibae DFL 12] Length = 488 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82 HD+ SP+ A+ EL+DE D ++ + L F R G TGS + + Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 L + + +A S + L NL ++ GG +S Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379 Query: 143 SKNENIFSLKINGNLARFPEK 163 + + ++ NG + Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400 >gi|84686728|ref|ZP_01014615.1| sensor histidine kinase [Maritimibacter alkaliphilus HTCC2654] gi|84665159|gb|EAQ11638.1| sensor histidine kinase [Rhodobacterales bacterium HTCC2654] Length = 488 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82 HD+ SP+ A+ EL+DE D ++ + L F R G TGS + + Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 L + + +A S + L NL ++ GG +S Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379 Query: 143 SKNENIFSLKINGNLARFPEK 163 + + ++ NG + Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400 >gi|120603882|ref|YP_968282.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120564111|gb|ABM29855.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] Length = 550 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK----FMRL 69 L S + H+I +P+G + L E G+++ +++I ++ + R Sbjct: 271 LASGVAHEINNPLGGVILCFRNLTEGGMDEATRRQHIEVIDDGLEKIRRIVRELMHYARP 330 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFM 124 A + L D + D+ +R+ V ++LLNL + Sbjct: 331 APLSVREARAD-DLIDRTLALVDYTLQRRRINVVRHVSPDVPPLAIDPDKMGQVLLNLVL 389 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++P GG +TI+ + + ++ ++ G+ Sbjct: 390 NGADAMPDGGTLTITARRAGDDVRIEVQDTGSGV 423 >gi|119386714|ref|YP_917769.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119377309|gb|ABL72073.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] Length = 656 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 22/176 (12%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61 + S L AL + + I H+I +P+ I +L++L D D ++LI Sbjct: 429 VQSEKLAALGEISAGIAHEINNPLAVIQGNLDVLREVLGDAATPADTELRLIDDQIRRIS 488 Query: 62 I----RLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGE---KIDL 111 + L F R G L + + V + + + Sbjct: 489 LIVTQLLDFARA--DQAGEDHPATDLAQAVAECVPLVGHMLARSSVSLRQDIRSDRPVRI 546 Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164 SR + +L+NL + A ++P+GG++ I+ QD L++ + P Sbjct: 547 SRIAVQQVLVNLIVNAVHAMPKGGEIRIAGQDEDRAGAAGVLLEVADDGEGIPAAI 602 >gi|115377471|ref|ZP_01464673.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1] gi|115365515|gb|EAU64548.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1] Length = 464 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 20/209 (9%) Query: 24 HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLA-FGYT 74 H+I +P+G I +L L + E + LI S+ LKF R + Sbjct: 249 HEINNPLGGILAFAQLMKRDLGRSEADRESLDLIEESALRCKRIVESLLKFSRHSKVEDR 308 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129 + + D + + + + RV++ + ++++LNL + Sbjct: 309 RHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASGLPKLFGDPAQLSQVVLNLLQNGLQA 368 Query: 130 LPRG-GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYY 185 LP G + + + F++ +G+ P F + Y Sbjct: 369 LPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYLPRIFEPSFTTKPPGEGTGLGLSIAY 428 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + H + L Sbjct: 429 --RIVQDHGGVFQVDTQVGHGSRFTVFLP 455 >gi|197117920|ref|YP_002138347.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087280|gb|ACH38551.1| sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 488 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 71/216 (32%), Gaps = 23/216 (10%) Query: 17 LLCSRICHDIISPIGAIH--NSL---ELLDEVGIEDEVMQLIRLSSMS---AIIRLKFMR 68 LL + + H+I +P+ AI + + E+ + D + ++ S L + R Sbjct: 273 LLAAGMAHEIGTPLAAIMGYSGILSEEVAGDPEKSDYLRRITEESKRIDRIVRGLLDYAR 332 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERA------KILL 120 GS I + + + + + + +++ + L R A ++L+ Sbjct: 333 ----PKGSQREEIEVLQLLEKVVELLEAQGALKLLEVTVEAEPSLPRLYADPHQLEQLLI 388 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDS 178 NL M A ++P+GGK+ + + G PE + D + Sbjct: 389 NLIMNAKDAMPKGGKLQLKGMSVGGGVAIEVADTGEGM-PPEHLPLVFDPFFTTKEPGKG 447 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A L + L Sbjct: 448 TGLGLAIAARIAESCGGTLTVQSELGEGSRFRLTLP 483 >gi|148265437|ref|YP_001232143.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398937|gb|ABQ27570.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 406 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 25/217 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI-------IRLK 65 +L ALL H+I +P+G I +L++E A L Sbjct: 197 ELGALLA----HEIRNPLGGIKGFAQLVEESDDAQRSAGFASKIVAQASRLEDLVNDLLA 252 Query: 66 FMR------LAFGYTGSVDSLIGL--GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 F R L V+ + L + EQ +D ++ ++ + + Sbjct: 253 FAREEKDAHLPLDLAPLVEESVALVRHEAEQQ-----HIDVKLSIAHGIVVPIAAERIEQ 307 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 +LLNL A ++P GG++ ++ +N I ++ NG + P I + S + Sbjct: 308 LLLNLCKNAVQAMPDGGELRAELRRERNMAIITIADNGIGIQ-PTYLDHIFEPFWTSKVR 366 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A E+ + + + V + L Sbjct: 367 GTGLGLALCRRIAEEHGGAVRVKSAVNQGSVFTVELP 403 >gi|46578536|ref|YP_009344.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|46447947|gb|AAS94603.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|311232462|gb|ADP85316.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 554 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK----FMRL 69 L S + H+I +P+G + L E G+++ +++I ++ + R Sbjct: 275 LASGVAHEINNPLGGVILCFRNLTEGGMDEATRRQHIEVIDDGLEKIRRIVRELMHYARP 334 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFM 124 A + L D + D+ +R+ V ++LLNL + Sbjct: 335 APLSVREARAD-DLIDRTLALVDYTLQRRRINVVRHVSPDVPPLAIDPDKMGQVLLNLVL 393 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++P GG +TI+ + + ++ ++ G+ Sbjct: 394 NGADAMPDGGTLTITARRAGDDVRIEVQDTGSGV 427 >gi|196233248|ref|ZP_03132094.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222719|gb|EDY17243.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 720 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 13/130 (10%) Query: 24 HDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYT 74 HD + + AI ELL+ + ++ Q IR++ A L F R Sbjct: 349 HDFNNLLTAIMGYSELLEAKLERDGASQEFARQ-IRITGEKAAALTKQLLAFSRRQLLSP 407 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLP 131 +D + +GD+E++++ I R+Q+ T + + + +++LNL + A ++P Sbjct: 408 KVLDLNVVVGDLEKLLQRIIGEHIRIQLQTTTVEARVRADPGQLEQVILNLGVNARDAMP 467 Query: 132 RGGKVTISVQ 141 RGG +TIS + Sbjct: 468 RGGTLTISTE 477 >gi|15605780|ref|NP_213157.1| histidine kinase sensor protein [Aquifex aeolicus VF5] gi|2982944|gb|AAC06560.1| histidine kinase sensor protein [Aquifex aeolicus VF5] Length = 339 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 21/152 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR-LKFMRLAFGYTGSVDS 79 H + +P+ I +LE L++ E +++I+ S + + + L F R D+ Sbjct: 141 HQLNTPLATISLALEELEKKCGSCEEIEVIKNALISCKNTVDKLLLFAR--------KDN 192 Query: 80 LIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 L D ++ +ED + A ++ V + E + + I +LNL + A + Sbjct: 193 NKDLVDTKKAVEDVLELLRVYAKERGVIIEKELESVYMFGNETDIRHVVLNLVLNAIQAS 252 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 RG KV + ++ E I ++ G E Sbjct: 253 DRGKKVRVFLKKEGEELILIVEDEGKGIPPEE 284 >gi|309951517|gb|ADO95183.1| sensor histidine kinase [Sinorhizobium sp. M14] Length = 488 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 31/225 (13%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQL-------IRLSSMS 59 L +L L S + H+I +P+G + NS++ L G+ + L IR + Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNSIDTLKRHGANEGVRSTSVSLLERGLGGIRDVVQA 319 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DLSRE 114 A+ + R +G L L D+ ++ + + +R + W L Sbjct: 320 ALATYRPDR-----SGKPLVLQDLEDVR-LLAGPVIISRRQTMHWVSSPSNLTISALPGS 373 Query: 115 RAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LLNL + A A+ G + + ++ + L + P+ T ++ Sbjct: 374 TVRQALLNLVLNASAAAGDDGTIFVETCLEEDGSTLILSVADTGPGLPKAATNVL--TSP 431 Query: 174 STIDSHD----IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L E + + V+ L Sbjct: 432 DPWPAAQSAGGLGLWMVRKLVDEAGGHIRLSRTEAGLTVIELHLP 476 >gi|171912617|ref|ZP_02928087.1| periplasmic sensor signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 409 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 25/221 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-------------EVGIEDEVMQLIRLSSMSAIIRL 64 + +++ H++ +P+GAI +L+LL E L+ Sbjct: 151 MAAQVAHEVRNPLGAISLNLDLLACEVTELASSAPTPATHTPHEAHALVDQIRAEVERVE 210 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA 116 K +R G+ + + +++ +A R+ S+ + + + Sbjct: 211 KVVRDYLGFARLPKVMPAPHCLHTFLDEKLALLLPELGKAHVRLIKSYDPQVRTANIDAV 270 Query: 117 KI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++ LLNL + A ++P GG + ++ + S ++ G R E + Sbjct: 271 QLWQVLLNLVLNARDAMPAGGVLRVATRQSGTALQITVTDTGCGIR-KEDLPSLFTPFFT 329 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E+ L + I + L Sbjct: 330 TKANGTGLGLALSHQIIAEHDGELSCQSIPGSGTTFTITLP 370 >gi|310825311|ref|YP_003957669.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398383|gb|ADO75842.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 514 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 22/215 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S + H+I +P+G I +LL+ G ++E ++ IR A +F+ Y+ Sbjct: 304 LASAVAHEIRNPLGVILAEAKLLELSGADEESVRAIRDQVARAS---RFVEDLLHYSRPR 360 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQ-------------VSWTGEKIDLSRERAKILLNLFM 124 S + D+EQV+ ++ ++ + W + L ++ N + Sbjct: 361 PSRMQEWDLEQVVAGAVSRARQAFGDAAPEVSLGLEPLRWDVDGEALGDVVVNLVTN-AL 419 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHD- 180 +A ++P+ G+V ++ + ++ NG A P F V G Sbjct: 420 IAVETIPQ-GRVQVTQRRVAEGVRIEVEDNGPGVPEALLPRLFEPFVTGRGRDARHPGTG 478 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L LL + Sbjct: 479 LGLALCRKWVQRHGGTLTHARSATGGARFVILLPR 513 >gi|207725203|ref|YP_002255599.1| two-component system sensor histidine kinase protein [Ralstonia solanacearum MolK2] gi|206590437|emb|CAQ37399.1| two-component system sensor histidine kinase protein [Ralstonia solanacearum MolK2] Length = 783 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 17/211 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMS---AIIRLKFMRLA---- 70 I HD+ SP AI +EL + G L+R LSS + A + R+ Sbjct: 566 ISHDMRSPQSAILALIELQRDAGRALGHEALLVRIQQLSSRTLELADAFIDLARVESQEI 625 Query: 71 -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V + D + ++ RV R + L+NL A Sbjct: 626 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 685 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFT--QIVDGNVESTIDSHDIQFY 184 PRG VT++V++ + S+ G P+ F + + + + Sbjct: 686 SPRGATVTVAVREEADAFAVSVVDQGVGIAAEDQPQLFQPFRRLHEAMADAPSGSGLGLV 745 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ H + L + Sbjct: 746 FVKTVVERHGGRIAVRSAPGHGATFTLWLPR 776 >gi|134096880|ref|YP_001102541.1| two component system histidine kinase [Saccharopolyspora erythraea NRRL 2338] gi|133909503|emb|CAL99615.1| two component system histidine kinase [Saccharopolyspora erythraea NRRL 2338] Length = 504 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 69/204 (33%), Gaps = 15/204 (7%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTGSV 77 HD+ +P ++ + + L+ + + L+ + L+ R G Sbjct: 288 HDLRTPTASLVAAADSLEHPDPESRSRAVALVSTQARRLARLVDDLLEISRFDSGAAELR 347 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 + L ++ + + + D V++ T + + R ++ + + ++ G + Sbjct: 348 PEGVDLRELVREAIELVTCDADVRLDATADTTLVGDPR-RLHTIVCNLLANAVHHGAEPV 406 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSHDIQFYYVILLAH 191 D + L++ + PE+ T+I+ S D + A Sbjct: 407 TVAIDGTDPGQVVLRVADSGPGVPEELTRILFDRFVRGDRARSATDGSGLGMAIAQQNAL 466 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + R+ +D V + L + Sbjct: 467 VHGGRITVH--NDGGAVFTLTLPR 488 >gi|310823300|ref|YP_003955658.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396372|gb|ADO73831.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 522 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 20/209 (9%) Query: 24 HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLA-FGYT 74 H+I +P+G I +L L + E + LI S+ LKF R + Sbjct: 307 HEINNPLGGILAFAQLMKRDLGRSEADRESLDLIEESALRCKRIVESLLKFSRHSKVEDR 366 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129 + + D + + + + RV++ + ++++LNL + Sbjct: 367 RHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASGLPKLFGDPAQLSQVVLNLLQNGLQA 426 Query: 130 LPRG-GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYY 185 LP G + + + F++ +G+ P F + Y Sbjct: 427 LPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYLPRIFEPSFTTKPPGEGTGLGLSIAY 486 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ + H + L Sbjct: 487 --RIVQDHGGVFQVDTQVGHGSRFTVFLP 513 >gi|312879449|ref|ZP_07739249.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782740|gb|EFQ23138.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 985 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 75/180 (41%), Gaps = 22/180 (12%) Query: 24 HDI---ISPI---GAIHNSLELLDEVGIEDEVMQLIRLS--SMSAIIRLKFMRLAFGYTG 75 HD+ ++PI G I + E + + V +++R + + +L LAFG Sbjct: 625 HDLNNLLTPILGYGEILQA-EFRGDEEKRECVEEILRAGQRARDLVAQL----LAFGRKQ 679 Query: 76 SVD-SLIGLGDI----EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 ++ + L ++ E+++ I D +++ + + ++ LLNL + A Sbjct: 680 VLEFRTLDLNEVVRGFEKLLRRTIREDIKLRFFLQDPLPPIRGDAGQLEQVLLNLAVNAQ 739 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING-NLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P+GG +++ + + ++ G + R ++ + +H + +Y Sbjct: 740 DAMPQGGVLSVETGAADLDEAYAASHQGMTVGRHVLLVVSDSGKGMDEEMRAHLFEPFYT 799 >gi|79075655|gb|ABB51924.1| putative sensor histidine kinase [Agrobacterium tumefaciens] Length = 488 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 80/225 (35%), Gaps = 31/225 (13%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQL-------IRLSSMS 59 L +L L S + H+I +P+G + NS++ L G+ + L IR + Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNSIDTLKRHGANEGVRSTSVSLLERGLGGIRDVVQA 319 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DLSRE 114 A+ + R +G L L D+ ++ + + +R + W L Sbjct: 320 ALATYRPDR-----SGKPLVLQDLEDVR-LLAGPVIISRRQTMHWVSSPSNLTISALPGS 373 Query: 115 RAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LLNL + A A+ G ++++ ++ ++ L + P T ++ Sbjct: 374 TVRQALLNLVLNASAAAGDDGTISVATCLEEDGSMLILSVADTGPGLPNAATNVL--TAP 431 Query: 174 STIDSHD----IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V L E + + V+ L Sbjct: 432 DPWPAAQSAGGLGLWMVQKLVDEAGGHIRLSRTEAGLTVIELHLP 476 >gi|239905818|ref|YP_002952557.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795682|dbj|BAH74671.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 376 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 74/208 (35%), Gaps = 21/208 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD+ SP+ + ++LE L+ G + ++ ++ + + R L RL G G Sbjct: 166 HDLKSPLATVASALEALELAGPLNVQQRGLIAMLERAVAAMTARINLSLHLYRLESGTLG 225 Query: 76 SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126 + L D + + ++ + ++++ +L+NL A Sbjct: 226 LTPQPLSLATLLADAREELAPYLTAGREWRIAYEAPAETFIVLGERAMFTAMLVNLLKNA 285 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-SHDIQFYY 185 + G V ++V D L I+ P ++ + +V + + Y Sbjct: 286 LEAADEAGSVVVTVAD---PPSPRLVIDNPGEAPPHIRARLFEKHVTAGKARGTGLGAYS 342 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALL 213 L+A ++ + V++ L Sbjct: 343 ARLIARAFGGDVVADTTIPGRTVVTVTL 370 >gi|156743753|ref|YP_001433882.1| GAF sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235081|gb|ABU59864.1| GAF sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 492 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 19/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L S L A+ L + + H+I +P+ A NSL L+++ I + + I R Sbjct: 256 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDIPPDTPQRHFLTIAQNELGRIAR 315 Query: 64 L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL---SRE 114 + F R A + L + ++++ + + V V + L + Sbjct: 316 IITRMRDFYRPARDELEPTEINDLLAETIELVQTHLRHGQVTVTVDFCPNLPRLIAHPDQ 375 Query: 115 RAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF-PEKFTQIVD 169 ++ LNL + A ++P GG++ I S ++ + + I + PE + + Sbjct: 376 LRQVFLNLMLNACDAMPHGGQLHITTELSCENDADAQYVVISIRDSGTGINPEHMPHLFE 435 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + LL Sbjct: 436 PFYTTKPQGTGLGLAISAHIVTQHGGHIQVESEPGAGSTFTVLLP 480 >gi|27383096|ref|NP_774625.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27356270|dbj|BAC53250.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 764 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 12/138 (8%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFG-YTGSVD 78 HD + + A+ SLELL + ++++L+ + A+ L LAF Sbjct: 401 HDFNNLLAAVLGSLELLKKRLPTDDPKILRLVENAMQGAVRGASLTQRMLAFARKQDLRP 460 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------LLNLFMVAHASLPR 132 +++ + ++ + + + + + V L + + +LNL + A ++P Sbjct: 461 AVVDVRELVRGMASLLKFEAGIDVETRFPMH-LPKVKVDANQLELAILNLAVNARDAMPD 519 Query: 133 GGKVTISVQDSKNENIFS 150 GG++TI+ ++ + E S Sbjct: 520 GGQITIAAREEQGEGGLS 537 >gi|294338507|emb|CAZ86835.1| Sensor protein kdpD [Thiomonas sp. 3As] Length = 914 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVM 50 +A++ + + + L S + HD+ +P+ A+ + E+L D + + + Sbjct: 656 VAQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLVAHPPGDAATLHSQAL 715 Query: 51 QLIRLS---SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVS 103 L++ S + L RL G + + + ++ +Q+ Sbjct: 716 SLLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQID 775 Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158 + + + ++L+NL A P G + + + E ++ G Sbjct: 776 LPADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPA 835 Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 R F G+ ES I + + + R+ + + L Sbjct: 836 GRERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892 >gi|114777110|ref|ZP_01452130.1| Sensory histidine kinase (with HAMP and PAS domains) [Mariprofundus ferrooxydans PV-1] gi|114552631|gb|EAU55091.1| Sensory histidine kinase (with HAMP and PAS domains) [Mariprofundus ferrooxydans PV-1] Length = 386 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 24/213 (11%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTG 75 HD+ +P+ ++ L D+ G E +Q+I + L ++ F Sbjct: 174 HDLKTPLTSLLGYARSLQRFGDDPGFRQEAIQVIADEAKHVNHLLDAMLTLDQIEF-AGS 232 Query: 76 SVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLS-RERA----KILLNLFMVAH 127 D+ D+ + + D + +K++ + R +++ NL A Sbjct: 233 DPDASCDAEDVIRQVCDMLKEPVSNKKISLICDIPDDLPDMRMDVDSFERVVRNLLENAT 292 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDI 181 P+GG+VT+S+Q + ++ +G R E+F ++ D H + Sbjct: 293 QYAPKGGRVTLSLQQEGDMGRLVVRDDGPGIPDKHLKRVTERFYRV-DKARSREYGGHGL 351 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V L + + +D H + + + Sbjct: 352 GLAIVKELCEAHGGSVQLTNVDPHGLEATLAIP 384 >gi|189424232|ref|YP_001951409.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420491|gb|ACD94889.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 551 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 25/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----IIRLKFMRL 69 L + + H++ +P+G+I LL + + E + +I + + L F R Sbjct: 333 LSAGVAHELNTPLGSILGYARLLLKQENLTQQQREQLAVIAEQAKKSGTIIQALLNFSRH 392 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSWTGEKIDLSRERA------KIL 119 A + D+ VI++ + + ++ T + + + A +++ Sbjct: 393 A----QPTQCRLDACDLNSVIKNALCLLTTELSKRKIILTTDLELIPKVCADPWGIEQVV 448 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 LNL M A ++ G++ I V+ ++ +G E ++I D + Sbjct: 449 LNLVMNALQAIGSQGEIRIIVRRQPEGVRLEVQDSGPGI-PDEVRSRIFDPFFTTKPFGE 507 Query: 180 DIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 I + +EN + D +L Sbjct: 508 GTGLGLSICAGIVNENGGNIDIVKSDSRGTTFVVILP 544 >gi|291006677|ref|ZP_06564650.1| two component system histidine kinase [Saccharopolyspora erythraea NRRL 2338] Length = 517 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 69/204 (33%), Gaps = 15/204 (7%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTGSV 77 HD+ +P ++ + + L+ + + L+ + L+ R G Sbjct: 301 HDLRTPTASLVAAADSLEHPDPESRSRAVALVSTQARRLARLVDDLLEISRFDSGAAELR 360 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 + L ++ + + + D V++ T + + R ++ + + ++ G + Sbjct: 361 PEGVDLRELVREAIELVTCDADVRLDATADTTLVGDPR-RLHTIVCNLLANAVHHGAEPV 419 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSHDIQFYYVILLAH 191 D + L++ + PE+ T+I+ S D + A Sbjct: 420 TVAIDGTDPGQVVLRVADSGPGVPEELTRILFDRFVRGDRARSATDGSGLGMAIAQQNAL 479 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + R+ +D V + L + Sbjct: 480 VHGGRITVH--NDGGAVFTLTLPR 501 >gi|170740074|ref|YP_001768729.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194348|gb|ACA16295.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 927 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 21/177 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIR---LSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + I SL++L G+ E Q LI S+ A ++ + LAF Sbjct: 577 HDFNNLLTPIVGSLDMLQRRGLGGEREQRLIAGAMQSAERAKTLVQRL-LAF--ARRQPL 633 Query: 80 L---IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAK------ILLNLFMVAHAS 129 + + + + D +A Q+ + D L +A LLNL + A + Sbjct: 634 QPIPVDVAKLVTGMGDLVASTMGPQIRVAVDAPDALPPAKADPNQIEMALLNLCVNARDA 693 Query: 130 LPRGGKVTISVQDSKNENIFSLKIN-GNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +P GG + IS + + G R ++ + ++ ++ Sbjct: 694 MPEGGTLRISARAETVGPGHRTTLRPGPYIRLS---VADSGTGMDEATLARAVEPFF 747 >gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 914 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 24/170 (14%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI----IRL 64 + +A+L H++ +P+ I N++EL+ I+ + + +I + L Sbjct: 548 EFLAMLG----HELRNPLAPICNAVELMRMHLHHPAIQSKSIDIIDRQAKHLTRLVNDLL 603 Query: 65 KFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSWTGEKIDL-----SRER 115 R+ G + L + + + I R +++ + L Sbjct: 604 NVARIVTGKINLKTQPVELKEVVMQAVETAQPAIE-SARHELTLSLPAQPLKVEADPVRL 662 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKF 164 +I+ NL A P GG + + V S + E I ++ NG PEK Sbjct: 663 VQIVANLLNNAVNYTPSGGHIQLQVAQSQEGEAIIRVRDNGVGI-LPEKL 711 >gi|296134571|ref|YP_003641813.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia K12] gi|295794693|gb|ADG29483.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia K12] Length = 914 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 23/237 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVM 50 +A++ + + + L S + HD+ +P+ A+ + E+L D + + + Sbjct: 656 VAQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLAAHPPGDAATLHGQAL 715 Query: 51 QLIRLS---SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVS 103 L++ S + L RL G + + + ++ +Q+ Sbjct: 716 SLLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQID 775 Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158 + + + ++L+NL A P G + + + E ++ G Sbjct: 776 LPADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPA 835 Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 R F G+ ES I + + + R+ + + L Sbjct: 836 GRERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892 >gi|241912487|gb|ACS71957.1| integral membrane sensor histidine kinase/response regulator [Azospirillum brasilense] Length = 711 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 9/98 (9%) Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDL--SRERAKI---LLNLFMVAHASL 130 +I LGD + + D + R + W L + ++ +LNL + A ++ Sbjct: 420 PKVIDLGDALRAMADLLERSIRADIALDWALPSAPLRVEVDPVQLELAVLNLVVNARDAM 479 Query: 131 PRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQ 166 P GG++ I+V+ + + + L+I P + Sbjct: 480 PEGGRIRIAVRQEETPDGPLAVLEITDTGGGMPPEVAA 517 >gi|225165773|ref|ZP_03727562.1| Signal transduction histidine kinase-like protein [Opitutaceae bacterium TAV2] gi|224799984|gb|EEG18424.1| Signal transduction histidine kinase-like protein [Opitutaceae bacterium TAV2] Length = 722 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 31/193 (16%) Query: 13 DLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---R 63 L A++ R I HD+ P G++ + +L + E +L +S+ A + Sbjct: 484 RLSAMVVGRNRVLSIIGHDLRGPAGSLQSLTRMLADESAEFTSAELAEISTEIARACMLQ 543 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------TGEKIDLS 112 ++ + ++GS + G + + D + R+ + W + Sbjct: 544 VELLNNLLAWSGSALASTGRPEAVADVRDAVGETWRL-LEWTAGTKKLTFTQDVPAGLVV 602 Query: 113 RERAK----ILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEK 163 R A IL NL + + P GG++ ++ +D E ++++ P Sbjct: 603 RAEASHLQTILRNLLVNSIKFTPAGGRIRVAAGLVPARDPGEEARVEIRVSDTGVGIPPA 662 Query: 164 -FTQIVDGNVEST 175 +++DG VEST Sbjct: 663 RLERLLDGIVEST 675 >gi|330831699|ref|YP_004394651.1| sensor histidine kinase [Aeromonas veronii B565] gi|328806835|gb|AEB52034.1| Sensor histidine kinase [Aeromonas veronii B565] Length = 473 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 18/208 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 H++ SP+ AI + E+L E + + I R L+ RL G Sbjct: 265 HELKSPLAAIRGAGEILAETPPPEVAKRFIGN-INQETARMQQLIERMLQLARLESGQGL 323 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL------NLFMVAHAS 129 S+ ++ ++ + +R QV E +++ LL NL A Sbjct: 324 DRQSVEPAKLGKRTLDARQIIAQRRQVELVAELASAPKQKWDPLLVEQAIGNLLDNAIDF 383 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYV 186 P G+VT+S + F + +G P F + S + + Sbjct: 384 SPANGQVTLSGSQQEEGYCFRVTDSGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFA 443 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 +AH++ RL + + L Sbjct: 444 HEVAHQHGGRLTLSNRPEGGALAELWLP 471 >gi|225872344|ref|YP_002753799.1| sensory box histidine kinase, putative [Acidobacterium capsulatum ATCC 51196] gi|225793977|gb|ACO34067.1| sensory box histidine kinase, putative [Acidobacterium capsulatum ATCC 51196] Length = 647 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 27/202 (13%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 H++ +PI AI LELL + + + +I+ ++ + Sbjct: 422 HEVKNPINAIVVHLELLRNKVELKEPAQKHLDIIQSEIRRLDRVVQTL-------VDFSR 474 Query: 80 LIGLG----DIEQVIEDFIA------VDKRVQVSWTGEKIDLS-RERA----KILLNLFM 124 + L D+ Q+++ + + V + + + ++ + A + LLN+ + Sbjct: 475 PVDLHMREYDLRQIVQQVLTLASVELEGRGVTLKSSLPEFPVTVKVDADLTTQALLNVVI 534 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 ++P GG + + + + I ++ G PE +I D + D I Sbjct: 535 NGAQAMPDGGLLDVRLAEDGRWAIIRVRDEGTGI-PPEVLPRIFDLYYTTKKDGSGIGLA 593 Query: 185 YVILLAHENKIRLLPEIIDDHN 206 + R+ E Sbjct: 594 MTYRILQFQNGRVDVESSSGGT 615 >gi|224825196|ref|ZP_03698302.1| histidine kinase [Lutiella nitroferrum 2002] gi|224602867|gb|EEG09044.1| histidine kinase [Lutiella nitroferrum 2002] Length = 708 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 18/178 (10%) Query: 21 RICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYT 74 R+ H++ +P+ I N + +L+ G + ++R L+ R A G + Sbjct: 493 RLVHELNNPLAIIRNYVSILEAASAGKGAPQPELAIVREEIDRVAHMLRAAREQQAEGES 552 Query: 75 GSVDSLIGL--GDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAK-ILLNLFMVAH 127 + D+ + I R+ ++ I R+R K +L+NL A Sbjct: 553 ARGPVKLNRIVEDLATLFRGSIPFAGLVDIRLDLAEALPDIVSDRDRLKQLLVNLIKNAL 612 Query: 128 ASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHD 180 ++P+GG VT+S + +++ N P E TQ+ SH Sbjct: 613 EAMPQGGHVTLSTAAWGLGEAGASHVEIRVEDNGPGIPKEVLTQLYQPVASQKPGSHQ 670 >gi|207743578|ref|YP_002259970.1| two-component system sensor histidine kinase protein [Ralstonia solanacearum IPO1609] gi|206594977|emb|CAQ61904.1| two-component system sensor histidine kinase protein [Ralstonia solanacearum IPO1609] Length = 783 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMS---AIIRLKFMRLA---- 70 I HD+ SP AI +EL + G L+R LSS + A + R+ Sbjct: 566 ISHDMRSPQSAILALIELQRDAGRALGHEALLVRIQQLSSRTLELADAFIDLARVESQEI 625 Query: 71 -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V + D + ++ RV R + L+NL A Sbjct: 626 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 685 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 PRG VT++V++ + S+ G + A+ + F ++ + + + Sbjct: 686 SPRGATVTVAVREEADAFAVSVADQGVGIAAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 744 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ H + L + Sbjct: 745 VFVKTVVERHGGRIAVRSAPGHGATFTLWLPR 776 >gi|83749287|ref|ZP_00946286.1| Phosphate regulon sensor protein phoR [Ralstonia solanacearum UW551] gi|83724068|gb|EAP71247.1| Phosphate regulon sensor protein phoR [Ralstonia solanacearum UW551] Length = 784 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMS---AIIRLKFMRLA---- 70 I HD+ SP AI +EL + G L+R LSS + A + R+ Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALGHEALLVRIQQLSSRTLELADAFIDLARVESQEI 626 Query: 71 -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V + D + ++ RV R + L+NL A Sbjct: 627 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 686 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 PRG VT++V++ + S+ G + A+ + F ++ + + + Sbjct: 687 SPRGATVTVAVREEADAFAVSVADQGVGIAAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 745 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ H + L + Sbjct: 746 VFVKTVVERHGGRIAVRSAPGHGATFTLWLPR 777 >gi|126731838|ref|ZP_01747642.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Sagittula stellata E-37] gi|126707665|gb|EBA06727.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Sagittula stellata E-37] Length = 382 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 24/212 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD+ +PI A+ + L +++E + E ++ L A+ R + F R G Sbjct: 170 HDLRNPIAAVTSGLRMIEERDLLPERRAMLVLEMQRALTRASQIITNLMDFARGRLGAGI 229 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLP 131 +++ + D+ V D I ++V IDL R ++ L + ++ Sbjct: 230 EMNAPAPV-DLAPVFRDVIGEIEQVAGQPVYSSIDLPRALVADPQRLGQLLSNLLGNAVT 288 Query: 132 RGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSHDIQ 182 G +T+ + + E + S+ G A P + + + ++ + Sbjct: 289 HGAPSQPITVDIAERDGELVASVTNQG--APIPPDVQASLFQPFSRNESKRKSLQGLGLG 346 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y +A + RL ++ + + Sbjct: 347 LYIASQIALAHGGRLHVSSSEEAGTTFTLRMP 378 >gi|311696853|gb|ADP99726.1| two-component system sensor histidine kinase [marine bacterium HP15] Length = 472 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 10/149 (6%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 D LL + + HD+ +PI ++ +E+L E D ++ +R A L F+R G Sbjct: 266 DRARLLAA-LAHDLRTPITSMRLRVEMLPEGEDRDRLLDSLREMQHLAEATLDFIR---G 321 Query: 73 YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129 T L + + D + V + + + A + L NL + Sbjct: 322 TTTEQHRRYDLATLLDSLCGDLQEMGLAVHCDDSPRCVLQGQPEAVKRALRNLI---ENA 378 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158 + G + +++ + E + ++ G Sbjct: 379 VNYGEQAEVTLATTDTEAVVTIVDQGPGI 407 >gi|118580923|ref|YP_902173.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503633|gb|ABL00116.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 543 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 24/220 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRL 64 S L L L +R+ H+I +P+ A+ S++LL + G + ++ +I + + Sbjct: 319 SDKLAVLGSLAARMAHEIRNPLAAMSGSVQLLADHGTVAENDQRLLAIILRETDRLNALI 378 Query: 65 K-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEK---IDLSRERAK 117 F+ A I LG + + ++ D+R + ++ + I + + + Sbjct: 379 TSFLTYA-RPVSPHKERISLGGLIDEVRLLVSSDRRFGGITLTAQVPERMTISADQNQLR 437 Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 +L+NL A ++P GG+V IS + E+ + + + + Sbjct: 438 QVLINLLNNAAEAMPEGGRVEISAHLASPEDGDRAEQRAVITVSD------SGSGITDEV 491 Query: 177 DSHDIQFYYVILLAHENKIRLL--PEIIDDHNVVLSALLE 214 +H + ++ + + L II++H ++A Sbjct: 492 AAHLFEPFWTTK-SDGCGLGLAITYRIIEEHGGTITAESP 530 >gi|307718253|ref|YP_003873785.1| sensory transduction histidine kinase [Spirochaeta thermophila DSM 6192] gi|306531978|gb|ADN01512.1| putative sensory transduction histidine kinase [Spirochaeta thermophila DSM 6192] Length = 388 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 26/223 (11%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAII 62 L +L L + + H+I +P+GAI L+L++ + + + +I+ Sbjct: 154 LASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPYVGVIKEEIERLNR 213 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSR 113 + A + + ++ ++ + + VD R+ + L R Sbjct: 214 IVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRIPED--IPSLSLDR 271 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGN 171 K LLNL A ++P GG +T+ Q S G PE + I + Sbjct: 272 RYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVG--IPEHLKEKIFEPY 329 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E+ + + + + L Sbjct: 330 FTTKDTGSGLGLTLVYKIVQEHGGEIEVQSKEGKGTTFTLLFP 372 >gi|219849102|ref|YP_002463535.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543361|gb|ACL25099.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 475 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 81/226 (35%), Gaps = 21/226 (9%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L S L A+ L + + H+I +P+ A NSL L+++ I +S I R Sbjct: 239 LQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQQELSRIAR 298 Query: 64 L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----R 113 + F R + G + + L + +++ + V V Sbjct: 299 IITRMRDFYRPSRGELTNANINALLRETLELVTTHLRHSH-VTVHTQLAPDLPPIVAHAD 357 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARF-PEKFTQIV 168 + ++ LN+ + A ++P GG++T+ + + ++ I+ PE + Sbjct: 358 QLRQVFLNIILNACDAMPGGGELTVRSELIASRPEEPMTLAVSISDTGVGIDPEHIPHLF 417 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ R+L + + LL Sbjct: 418 EPFYTTKPHGTGLGLAISAHIITQHGGRILVDSQPGVGTTFTILLP 463 >gi|78042822|ref|YP_360841.1| extracellular solute-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994937|gb|ABB13836.1| extracellular solute-binding protein, family 3/sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 656 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 78/206 (37%), Gaps = 19/206 (9%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTG 75 H+I +P+ + + LELL ++ +EV+ +++ + L + R Sbjct: 444 HEIKNPLFTVKSYLELLPLKANDPAFREEVINILKNELDNVQKLINDLLNYAR----PQN 499 Query: 76 SVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 S ++ L ++ + + + + K++ V + + ++ +NL + A + Sbjct: 500 SKKEIVVLEEVIAPLLNLLEPQFIAKQITVFKENLGFAVYADPMQLRHVFMNLLLNAIDA 559 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 + G++ I + ++ ++ G P+ QI + S D + I L Sbjct: 560 IQDKGEIKIKAAEYGDKIKIEVQDTGIGI-PPQYLNQIFNLFFTSKKDGNGIGLAICQKL 618 Query: 190 AHENKIRLLPEIIDDHNVVLSALLEK 215 EN +L + + L K Sbjct: 619 IQENGGSILVDSTPGAGTTFTIFLPK 644 >gi|300704594|ref|YP_003746197.1| sensor protein, histidine kinase transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299072258|emb|CBJ43591.1| Putative sensor protein, histidine kinase transcription regulator [Ralstonia solanacearum CFBP2957] Length = 766 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMRLA---- 70 I HD+ SP AI +EL + G L+ LSS + A + R+ Sbjct: 549 ISHDMRSPQSAILALIELQRDAGRALGHEALLARIQQLSSRTLELADAFIDLARVESQEI 608 Query: 71 -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V + D + ++ RV R + L+NL A Sbjct: 609 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 668 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 PRG VT++V++ + S+ G + A+ + F ++ + + + Sbjct: 669 SPRGAIVTVAVREEADAFTVSVADQGVGIAAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 727 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + H + L + Sbjct: 728 VFVKTVVERHGGRIAVQSAPGHGATFTLWLPR 759 >gi|197123814|ref|YP_002135765.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196173663|gb|ACG74636.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 581 Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 24/216 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRL---- 64 + R+ H+I +P+ I S+E L E + Q I + Sbjct: 359 VARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEGTQAIGEEVRRLKRIVDEFS 418 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRER-AKI 118 +F RL S + ++ + V+ V+ + R++ ++ Sbjct: 419 RFARL----PAPERSEVPAEELASAVLALFPAAPPGVEVERAVAPDLPAVLADRDQIMQV 474 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 LLNL A ++P GG++ + + + F + +G P ++ + + Sbjct: 475 LLNLVRNALDAMPSGGRLRLVARRDGDAVAFEVSDSGAGI-APADLERVFEPYFTTKPGG 533 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A E+ L + L Sbjct: 534 TGLGLAIARRIAEEHGGALEAASTPGAGATFTLRLP 569 >gi|186683916|ref|YP_001867112.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466368|gb|ACC82169.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 878 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 19/159 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAI 61 L + L +L L S I HD+ + + I +S+E+L + ++L+ +S A Sbjct: 501 LRAQRLESLGTLASGIAHDLNNILTPILSSVEMLALKLPNLDARNQQLLKLLEHNSKRAA 560 Query: 62 IRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111 +K F R + G S+ L +IEQ+I+ + + + L Sbjct: 561 DLVKQILTFSRRSEGNGISLKIEHLLLEIEQIIQSTFPKS--IAIINNVPRHKLWTILAD 618 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 + ++L+NL + A ++P+GG + IS ++ + F+ Sbjct: 619 PTQIHQVLMNLCVNARDAMPKGGTLFISAENLFVDENFA 657 >gi|78047261|ref|YP_363436.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927392|ref|ZP_08188640.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|78035691|emb|CAJ23382.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542213|gb|EGD13707.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 951 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL E G D + +++ + S+ A + + LAF Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + ++ + + D IA ++ D + + + LLNL + A Sbjct: 642 TLAPTALDVEELVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 702 DAMPDGGQLTISLHN 716 >gi|86749493|ref|YP_485989.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86572521|gb|ABD07078.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 456 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 10/158 (6%) Query: 13 DLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 L +L R + HD+ SPI A+ E++D+ ++ ++ + L F Sbjct: 245 RLARMLGERTRMLAALGHDLRSPITALRVRAEMVDDAENKERMIATLDEMQQMVEATLAF 304 Query: 67 MRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 R G + + L + + ++ + I L R + L + Sbjct: 305 AR---GVSTDQPTEPVDLAALASELAAELSAIGPPIRITSATPIVLPLRRVPLRRALRNI 361 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + GG + V+ E ++ G + Sbjct: 362 LENAQRYGGGAEVRVEQDGTEVRMVIEDRGPGLPDSDL 399 >gi|116625742|ref|YP_827898.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228904|gb|ABJ87613.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 587 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 14/163 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFG 72 L I HD+ +P+ AI+ E+L + + ++ + + A +++ + ++ G Sbjct: 368 LSGSIVHDLRNPLAAIYGGAEMLVDTELPPLHVKRLAGNIYRASRKIQELLQDLLNVSRG 427 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGE-KIDLSRERA-KILLNLFMV 125 S L ++ D +A + + E ++ L R R ++ NL Sbjct: 428 KQ-SAPENCRLREVASAACDSLATAAEQQGIAISLEIPSEIEVPLERSRVERVFANLVGN 486 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 A ++ GG+V I+ + + ++ G PE T++ Sbjct: 487 ALEAMQSGGEVHITAEMRDGAAVIHVEDTGPGI-APEIRTKLF 528 >gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 760 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 10/137 (7%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRL 69 LL + HDI + + I S ELL+ + E + IR S+ ++ F R Sbjct: 389 LLAGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAALVRQLLAFARG 448 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126 A G V L D + V ++ + + ++ L+NL + A Sbjct: 449 AVGQHTDVMLRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLKQVLMNLCINA 508 Query: 127 HASLPRGGKVTISVQDS 143 ++P GG++T+ V ++ Sbjct: 509 RDAMPEGGRITLHVTNT 525 >gi|39936633|ref|NP_948909.1| two component sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650489|emb|CAE29012.1| two component sensor histidine kinase [Rhodopseudomonas palustris CGA009] Length = 444 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 16/204 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + E +++ + + + L F+R G T +LI Sbjct: 240 ISHDLRTPITRMRLRAEFIEDDHQRTQTLHDLDQMGAMLTAVLTFLRD--GATRDAPTLI 297 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVT 137 L Q+I D A +V++ G + + + + + NL ++ G +VT Sbjct: 298 DLASAMQLITDQFADIG-AKVAYQGPEHAMAMARPGDLHRAVTNLV---ENAVRFGTEVT 353 Query: 138 ISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD---IQFYYVILLAH 191 I + +++ I ++ +G +K V G+ +D + +A Sbjct: 354 IRLALDQDQIIIEVEDDGPGIADADKDSVMQPFVRGDDARNMDDSSSFGLGLSIARAIAR 413 Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215 + L H ++ L + Sbjct: 414 GHGGELSLHTRTPHGLIARITLPR 437 >gi|149917201|ref|ZP_01905701.1| multi-sensor signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149822117|gb|EDM81510.1| multi-sensor signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 566 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 22/222 (9%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLSSM---SAI 61 S L AL L + + H++ +P+ AI ELLD + DE +LI R S Sbjct: 348 SERLAALGGLAASVAHEVRNPLAAISGCAELLDTLDANDEDRRLIRVIRRESVRLNEIVT 407 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLS-------R 113 L + R + + L ++ E F A + + E Sbjct: 408 ELLDYTR----PRKLERAPVDLCQALRELAEAFEADPQNAAIDLALELPPTPVHAELDSS 463 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + ++L NL ++ G++ + V S ++ G + I + Sbjct: 464 QITQVLWNLVRNGAQAMAHEGRLELGVVASLEFVHIHVRDQGRGIPDKD-LEHIFEPFFS 522 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I V + ++ + L K Sbjct: 523 TKDGGSGIGLALVQRIVEDHGGDIEVYSRVGEGTRFMVNLPK 564 >gi|148656031|ref|YP_001276236.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568141|gb|ABQ90286.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 488 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 19/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L S L A+ L + + H+I +P+ A NSL L+++ I + + I R Sbjct: 256 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDMPPDAPQRHFLTIAQNELGRIAR 315 Query: 64 L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL---SRE 114 + F R A + L + ++++ + V S+ L + Sbjct: 316 IITRMRDFYRPARDELELTEVNDLLAETIELVQTHLRHGHVTVTASFCPNLPLLVAHPDQ 375 Query: 115 RAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF-PEKFTQIVD 169 ++ LNL + A ++P GG++ I S ++ ++E + + PE + + Sbjct: 376 LRQVFLNLMLNACDAMPNGGQLHISTELSCRNERDEQWVVVAVRDTGVGINPEHMPHLFE 435 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E + LL Sbjct: 436 PFYTTKPQGTGLGLAISAHIVTQHGGHIQVESTPGVGSTFTVLLP 480 >gi|296124082|ref|YP_003631860.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296016422|gb|ADG69661.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 483 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 35/203 (17%) Query: 1 MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRL 55 + ++ + A LL + I H++ +P+ AI + ++LL+ I+ E + L+ Sbjct: 232 LQESQAMLVQHEKQAAFGLLAAGIAHEVGNPLAAISSLVQLLNRRDIDAHTREKLHLVDD 291 Query: 56 SSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L+ F R +V++ + ++ KR + Sbjct: 292 QLRRIQRTLRELVDFSR----PATNVETNCDIHEVLGAALSIAKYYKRKKGKRIVTAFAE 347 Query: 112 SRERAKIL--------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + R + + LNL + A + GG++ IS + ++ +G+ + Sbjct: 348 NIPRVRAVRDQLVQVFLNLILNALDATEEGGQIHISTSIADGWLRIDIRDDGHGIEPAAR 407 Query: 164 FTQIVDGNVESTIDSHDIQFYYV 186 S Q Y+ Sbjct: 408 --------------SRIFQPYFT 416 >gi|220915723|ref|YP_002491027.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953577|gb|ACL63961.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 516 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 27/229 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 L + L A+ + ++I H+I +P+ AI + ELL E +SAI R Sbjct: 278 LRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLVSAISREVD 337 Query: 64 ---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L+F RL L +I + DF+ + + Sbjct: 338 RLNAVTEEYLRFARL----PRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALAPGLP 393 Query: 115 RAK--------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FT 165 + + LNL + ++P GG VT+ + + + ++ P T Sbjct: 394 GVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPPGDLT 453 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E+ + E + + Sbjct: 454 RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502 >gi|91200750|emb|CAJ73802.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 1066 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 21/151 (13%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRL 64 S L ++ L + I H+I +P+GAI NS+ +LD G + +++++I S + Sbjct: 830 SEKLASMGELAAAIAHEIRNPLGAICNSVGILDSHLKLSGQDMDLLEMIVGESERLDRII 889 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGE---KIDLSRERA-- 116 L+F + + L DI+ +I++ + DKR + + L + Sbjct: 890 SDF-LSF--AHPREPSLVLQDIKGIIKNTIFLLGQDKRFTDKIEIKEIYETVLPKVYIDT 946 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDS 143 +IL NLF+ + ++P GG++ I V+ + Sbjct: 947 DLIHQILWNLFINSLDAMPDGGRIRIVVRKT 977 >gi|261339000|ref|ZP_05966858.1| hypothetical protein ENTCAN_05205 [Enterobacter cancerogenus ATCC 35316] gi|288318831|gb|EFC57769.1| sensor histidine kinase CreE [Enterobacter cancerogenus ATCC 35316] Length = 474 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 45/222 (20%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS------------AIIRLK------ 65 H++ SP+ AI + E+L E + + I + A RL+ Sbjct: 265 HELKSPLAAIRGAAEILSERPPPEVAARFIDNILVQNARMQSLVEKLLAQARLENRVDIV 324 Query: 66 ---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 F RLA GS +L+ + V + ++ G+ L Sbjct: 325 PVNVSVETLFTRLA----GSRPALLAAKQLTLVCQSG-------SLAVQGDPDLLE---- 369 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVE 173 + L NL A P GG + ++ +++++ ++ +G+ F + E Sbjct: 370 QALGNLLDNAIDFTPEGGAIQLAARETQDRVQLTVTDSGSGIPDYALDRIFERFYSLPRE 429 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + S + +V +A ++ + ++ V+ + L + Sbjct: 430 NGVKSSGLGLAFVQEVARLHQGEITLRNREEGGVIATLTLHR 471 >gi|217331418|gb|ACK38264.1| sensor histidine kinase [Ochrobactrum tritici] Length = 488 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 17/218 (7%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 L +L L S + H+I +P+G + N+++ L G+ + + L+ ++ Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNTIDTLKQHGGNEGVRNTSLSLLERGLGGIRDVVQA 319 Query: 67 MRLAFGYTGSVDSLI--GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KI 118 + S L+ L D+ ++ + + ++W + +L+ + Sbjct: 320 TLATYRPDRSGHPLVLKDLEDVR-LLAGPVVAGRTQTLNWMSKPAELTFPALPGSAVRQA 378 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STI 176 LLNL + A A+ G++ + + + + L + + ++ + Sbjct: 379 LLNLVLNASAAAGDYGEIFVETRLGEEGSTLILSVADTGPGLSKAAVDVLTSADPWSAAQ 438 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + E + D + V+ L Sbjct: 439 SAGGLGLWMVRRMVDETSGHIRVRSGDAAHTVIELHLP 476 >gi|156740610|ref|YP_001430739.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus castenholzii DSM 13941] gi|156231938|gb|ABU56721.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus castenholzii DSM 13941] Length = 516 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 20/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAII 62 + + L A+ L + I H++ +P+ AI L L E + +QL + Sbjct: 276 VRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCPPETPNQHFLQLAEEEIDRIVR 335 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 L+ +R + V + + + ++ + ++ R+QV + + Sbjct: 336 VLERLRDLYRPRADVFTHVNVNELIESVLLLTGKQLERSRIQVLRELAPDLPAIQGVADQ 395 Query: 117 --KILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++LLNL + A ++P GG + + + K ++ G P++ T+I D Sbjct: 396 LKQVLLNLVLNAAEAMPNGGTLHVQTYRYHPTEGKGAVAIAITDTGIGIS-PDQLTRIFD 454 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + Y + + R+ + I +L Sbjct: 455 GLHTTKERGMGLGLYTSRAIIERHLGRISAQSIPGEGTTFEIVLP 499 >gi|86157005|ref|YP_463790.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773516|gb|ABC80353.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 516 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 33/232 (14%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 L + L A+ + ++I H+I +P+ AI + ELL E +SAI R Sbjct: 278 LRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLVSAISREVD 337 Query: 64 ---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEK 108 L+F RL + D+ +++ + RV V Sbjct: 338 RLNAVTEEYLRFARL-------PRPQLERHDLNEILGGLLDFLGPELAAARVDVHRALAP 390 Query: 109 IDL-----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + LNL + ++P GG V + + + +++ P Sbjct: 391 GLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVRVVTRRVDSGAGVEVELGDTGGGIPPG 450 Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T+I + + + + + E+ + E V + Sbjct: 451 DLTRIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTVFTLRFP 502 >gi|190571272|ref|YP_001975630.1| hypothetical protein WPa_0873 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357544|emb|CAQ54981.1| Hypothetical protein WP0873 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 91 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L RI HD S + I LE L+E +++E + L++ SS I + K M+ A+ Sbjct: 12 LSGRILHDFASSMQGIVGGLEELEENNPNMQNEALSLLKESSDDLIYKYKVMKQAY 67 >gi|197121029|ref|YP_002132980.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170878|gb|ACG71851.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 516 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 27/229 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63 L + L A+ + ++I H+I +P+ AI + ELL E +SAI R Sbjct: 278 LRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLVSAISREVD 337 Query: 64 ---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L+F RL L +I + DF+ + + Sbjct: 338 RLNAVTEEYLRFARL----PRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALAPGLP 393 Query: 115 RAK--------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FT 165 + + LNL + ++P GG VT+ + + + ++ P T Sbjct: 394 GVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPPGDLT 453 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + E+ + E + + Sbjct: 454 RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502 >gi|192292456|ref|YP_001993061.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286205|gb|ACF02586.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 444 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 16/203 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + E +++ + + + L F+R G T +LI Sbjct: 240 ISHDLRTPITRMRLRAEFIEDDHQRTQTLHDLDQMGAMLTAVLTFLRD--GATRDAPTLI 297 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVT 137 L Q+I D A +V + G + + + + + NL ++ G +VT Sbjct: 298 DLASAMQLITDQFADIG-AKVVYQGPEHAMAMARPGDLHRAVTNLV---ENAVRFGTEVT 353 Query: 138 ISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD---IQFYYVILLAH 191 I + +++ I ++ +G +K V G+ +D + +A Sbjct: 354 IRLALDQDQIIIEVEDDGPGIADADKDSVMQPFVRGDDARNMDDSSSFGLGLSIARAIAR 413 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + L H ++ L Sbjct: 414 GHGGELSLHTRTPHGLIARITLP 436 >gi|182412767|ref|YP_001817833.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839981|gb|ACB74233.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 926 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 25/186 (13%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 F + ++ + +L + I HD+ + + I + +L + + +++I SA Sbjct: 544 FRVQRLESIGMLAAGIAHDLNNVLAPILLAAPMLRDHATDPGDIRMIATLEKSAERGAAL 603 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLS-RERA---- 116 +R G+ D + + + ++ D K +++ + A Sbjct: 604 VRQILGFAHGADGELRVIQPKHLLRDIATFVEETFPKSIKLDSLVPSDLWPVKANATQLH 663 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL + A ++P GG +T+ G E ++G Sbjct: 664 QVLLNLCVNARDAMPAGGTLTL---------------RGENCVLDEIAAANIEGASPGAF 708 Query: 177 DSHDIQ 182 +Q Sbjct: 709 LVMHVQ 714 >gi|168701206|ref|ZP_02733483.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 590 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 26/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRL 69 L + + HD + + I S LLD + A R L F R Sbjct: 253 LAAGVAHDFNNLLTVIGGSAALLDGPAGRGPNAARLVGEVRFAAERGQWLVRQLLTFARP 312 Query: 70 AFGYTGSVDSLIGL--GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFM 124 G +G D+ ++ + V E + + +R + LLNL Sbjct: 313 Q--AAGREPLDLGRVASDLAPILARVVGPAIETDVDTPAEPVFVLADRGELEQALLNLAT 370 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVESTIDS 178 A ++P GG++ + V+ + ++ G+ R E F +V + + Sbjct: 371 NARDAMPGGGRLALRVRAGADWVRVAVTDTGSGMPPEVRERIFEPFFTTKGPDVGTGLGL 430 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +A R+ E L + Sbjct: 431 TTV-----KQVAERCGGRIAVESAPGRGTTFDIDLPR 462 >gi|168698335|ref|ZP_02730612.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 480 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 14/214 (6%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAI----IRL 64 L AL L + + H++ +P+ AI ++++L + + E + + S L Sbjct: 260 LAALGRLLAGVAHEVRNPLTAIRSTVQLWERLPAAARTPESLAAVVGSVDRINELVGRLL 319 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSRERA-KILL 120 F R VD + +++ D + V ++ + + + +++L Sbjct: 320 LFARAGHEARRPVDLNAVTAETLELVRARADALGVALEPDLAPGLPPVPGAAQAVGQVVL 379 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL A ++P GG++T + + ++ G PE + + + D Sbjct: 380 NLVTNALQAMPAGGRLTCRTRATGGRVELAVTDTGPGV-PPEARDRAFEPFFTTRADGTG 438 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ + + L Sbjct: 439 LGLALCREVARQHGGDVTLDPPGGAGATFRLTLP 472 >gi|218887184|ref|YP_002436505.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758138|gb|ACL09037.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 24/151 (15%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63 S L AL L + + H+I +P+G I+ +LL + +++ +++I + A + Sbjct: 579 QSEKLAALGQLAAGLAHEINNPLGVINCYAQLLQKTQKDPQAQED-LEVIVQHTQKARLV 637 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------SRERA- 116 L+ + G + +L G D+ V+ D +A RVQ+ G I+L R A Sbjct: 638 LQDL---LGLARANRTLTGPSDLNAVLRD-MAQIFRVQLESAGADIELDLARGLPRVAAD 693 Query: 117 -----KILLNLFMVAHASLPRG-GKVTISVQ 141 +IL NL + A ++P+G G++ + + Sbjct: 694 TTSLEQILTNLLVNAIDAMPQGKGRIRVRTE 724 >gi|85860539|ref|YP_462741.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85723630|gb|ABC78573.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 503 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 20/171 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKF 66 L AL L + + HD+ +P+ +I +LL E ++LI + ++ Sbjct: 275 QLKALGYLTATLAHDLGTPLHSIAGMTQLLLERDEWPPDTARKLELILQQTQRLNTVIQN 334 Query: 67 MRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERA 116 +R A F S+ L D ++E I K VQ++ + + R Sbjct: 335 VRRATRLPEPHF---ESIPVQRLLDDTLPLVEPVIQKSKVELLVQIAPDTPPLYVDNYRV 391 Query: 117 K-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + L NL A ++P GGK+ +S + S + ++ + P Sbjct: 392 QTALFNLIQNALEAMPHGGKIFVSARVSNDRQAIAVTVQDTGPGIPPSMMG 442 >gi|157363248|ref|YP_001470015.1| multi-sensor signal transduction histidine kinase [Thermotoga lettingae TMO] gi|157313852|gb|ABV32951.1| multi-sensor signal transduction histidine kinase [Thermotoga lettingae TMO] Length = 863 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----II 62 L L + +R+ H++ +PI I L L + + + ++ + Sbjct: 643 KLALLGEMSARVAHELRNPITVIGGFLNRLKKNISDPQARERYLNILSNEVDNLQNIVSE 702 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAK-I 118 L+F R A S + L + A ++ + + + R R K + Sbjct: 703 ILEFSRSARNIDESKFQINELIEEVAFFMQEKAARNKINLEFMLSPLQEVVADRNRIKRV 762 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 L+NL A + P+GG++ + Q ++ + S+ G Sbjct: 763 LINLVQNAIEATPQGGRIILKSQQDQDRVLVSVFNTGE 800 >gi|86136346|ref|ZP_01054925.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Roseobacter sp. MED193] gi|85827220|gb|EAQ47416.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Roseobacter sp. MED193] Length = 682 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 26/144 (18%) Query: 24 HDIISPIGAIHNS-LELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYT 74 HD + + A+ LELL + + QLI S A +R L F R A Sbjct: 322 HDF-NNLLAVTLGNLELLKDEIENLQHKQLIDKSIA-ATLRGSDLTRNMLAFARKA---- 375 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 S I + + + +++I+ + W E LLNL + Sbjct: 376 SLEPSPIDINSVVEETKNWISRTLPATIEVKTSLGDGIWPVEAD--PSATESALLNLILN 433 Query: 126 AHASLPRGGKVTISVQDSKNENIF 149 A ++P+GGK+T+ + K ++ + Sbjct: 434 AQDAMPKGGKLTVETANVKIDDSY 457 >gi|168704468|ref|ZP_02736745.1| multi-sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 387 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 22/225 (9%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSS- 57 L + L A+ L + + H++ +P+ ++LL E + E + LIR Sbjct: 163 LRAEQLAAVGRLAAGVAHEVRNPL----TGIKLLVEGALRSESPASLTSEDLDLIRQEIV 218 Query: 58 ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDL 111 + L F R D + + + +V+++ + Sbjct: 219 RMERTVQGLLDFARTPPLECRPHDLRVLVSEAVNRARARAERKPVAVKVELAAAPLPVSA 278 Query: 112 SRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 R++ +L NL A + P GG V++ V+ + + + PE ++ Sbjct: 279 DRDQMLSLLTNLLFNAVDATPTGGNVSVRVEGTPDGPPTVTVNDSGPGIAPEAMGKLFTP 338 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A ++ L + + L + Sbjct: 339 FATTKPTGTGLGLTVARRIARDHGGTLTATNRPEGGAAFTLTLPR 383 >gi|223938141|ref|ZP_03630038.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223893185|gb|EEF59649.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 846 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74 I HD+ + + I + EL+ +E QLI + +A L F R G Sbjct: 473 IAHDLNNMLAPILMTCELMKMELPGEENQQLIAMIEGNAKRGSELVKQVLSFARGVEGCY 532 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129 S+ + +I +I + R+Q W + +++LNL + A + Sbjct: 533 LSLQPRHLIREIASIIGETFPKSIRIQTRIAENLWPLSGD--PTQLHQVMLNLSLNARDA 590 Query: 130 LPRGGKVTISVQD 142 +P GG +TI+ ++ Sbjct: 591 MPSGGDLTITAEN 603 >gi|171915231|ref|ZP_02930701.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 677 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 14/131 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRL-KFMRLAFGYTGSVDS 79 HD+ + + I +++LL + +L I S+ + + + A G G D Sbjct: 319 HDLNNVLSPIMMAVDLLKLNTPDSGSQELLENIATSAKRGADMVGQVLSFARGVEGRRDE 378 Query: 80 LIG---LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHASLP 131 + + D+E++I D + +++ + W+ + LLNL + A ++P Sbjct: 379 VHAGRLVDDVERIIRDTFPKNIQIRTNVGNDLWSLTGDLTQLHQV--LLNLCVNARDAMP 436 Query: 132 RGGKVTISVQD 142 GG + ISV + Sbjct: 437 EGGCIAISVDN 447 >gi|163846537|ref|YP_001634581.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|163667826|gb|ABY34192.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] Length = 470 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 19/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L S L A+ L + + H+I +P+ A NSL L+++ I + I R Sbjct: 239 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQQELGRIAR 298 Query: 64 L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER 115 + F R + G S + L + +++ + + ++ I ++ Sbjct: 299 IITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLPAITAHADQ 358 Query: 116 AK-ILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF-PEKFTQIVD 169 + + LN+ + A ++P GG++T+ + ++ I+ PE + + Sbjct: 359 LRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGIAPEHLPHLFE 418 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+L + + LL Sbjct: 419 PFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 463 >gi|163848872|ref|YP_001636916.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526828|ref|YP_002571299.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670161|gb|ABY36527.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450707|gb|ACM54973.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1043 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 18/180 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLK----FMRLAFGY 73 I HD + + I ++EL D ++ +R S+ A ++ F R G Sbjct: 678 IAHDFNNILTVITGNVELAMLEIAPDHPIYPELESVRQSTARASELVRQLLTFARRQPGQ 737 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASL 130 ++ + DI +++ I +++ + + ++L+NL + A ++ Sbjct: 738 PKPINVNHQINDIMNMLKRIIGEHIHLRLELCEPIDSINIDPHQFEQVLMNLVVNARDAM 797 Query: 131 PRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 P GG++TI ++ N FS G T I ++ TI H + Y+ Sbjct: 798 PNGGELTIRTSMQYVEAGNIPAFSQAKAGKYVLLSVCDTGI---GIDETIRGHIFEPYFT 854 >gi|302381789|ref|YP_003817612.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192417|gb|ADK99988.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 643 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 23/203 (11%) Query: 20 SRICHDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70 SR+ H++ +P+ AI ++ + + I + + ++ R+ Sbjct: 421 SRMSHELRTPLTAILGFNQLLGMDGETLTDDQRHGVDQISRAGGHLLAMIEEVLDIARIE 480 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERAKILLNLF 123 G + + + D IA R++ + R +I+LNL Sbjct: 481 AGGHALAPVPLDPAPLLADVRDLIAPQAQAAGVEVRIEGDAGLSVLADRRATVQIVLNLL 540 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI------VDGNVESTID 177 A P GG VT+++ + ++ G PE ++ +D S Sbjct: 541 SNAIKYGPAGGVVTVTLVGASGRVRIEVRDEGPGV-PPELVDRLFIPFDRLDAERWSGAQ 599 Query: 178 SHDIQFYYVILLAHENKIRLLPE 200 + LA + Sbjct: 600 GSGLGLALSRGLARAQGGEVSYH 622 >gi|283852154|ref|ZP_06369427.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572380|gb|EFC20367.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 306 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 25/230 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLI--RLSSMSAI 61 L S L A+ L S I H+I +P+ I L+L+ E G + L R S Sbjct: 77 LQSQKLAAIGELSSGIAHEINNPLAIITQELDLVREIAGEGPDVTAADLAEARDSLAEIG 136 Query: 62 IRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKID 110 ++ RL + ++ ++ ++QVIED + +R V + Sbjct: 137 RQVDRCRLVTHKLLNFARKMEPVLQEEALDQVIEDMALLAEREAAGRGLAIVRDYAPGLP 196 Query: 111 LSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 R +++LNL A A+ P+GG +T+S + + ++ G PE + Sbjct: 197 PIRTDVPLLRQVILNLLTNALAATPKGGTITVSTRRDEKTICIEVRDTGCGI-PPENMQK 255 Query: 167 IVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + + + L E + L Sbjct: 256 IFNPFFTTKEPGKGTGLGLSLAHGIVTRLGGTLAAESRPGQGAAFTVTLP 305 >gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1222 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 26/179 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L S + HD+ + + I S+ELL + + +++QL+ S+ ++ + L FG Sbjct: 846 LASGVAHDLNNVLTPILMSVELLRPLAQNQADRDMLQLLSDSARRGSDIVQQL-LLFGR- 903 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDLSRERA------KILL 120 GS + L + + R+ V DL A +++L Sbjct: 904 GSESPRVPLN-----VAGILKDTGRLMRETFPKKIVQTVYAPADLRLVEADRTQIHQVVL 958 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFTQIVDGNVESTID 177 NL + A ++P GG++ I+ ++ + E + + G G +D Sbjct: 959 NLCVNARDAMPEGGRLQITAENVEVEEELAQRHAAKGAGRYVRITVRDTGAGISPENLD 1017 >gi|229592186|ref|YP_002874305.1| putative two-component regulatory system, sensor kinase protein [Pseudomonas fluorescens SBW25] gi|229364052|emb|CAY51632.1| putative two-component regulatory system, sensor kinase protein [Pseudomonas fluorescens SBW25] Length = 390 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 16/221 (7%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAI----I 62 S+ +L + + HD+ +P+ AI+ E L + L+R S A Sbjct: 168 STAELREQFIAVLGHDLRNPLFAINFGAERLLRKFPDPATDTLVRHILTSGRRAAQLVED 227 Query: 63 RLKFMRLAFGYT--GSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R G ++ GL + Q V E +RV + G+ +S +R ++ Sbjct: 228 LLDFARGRLGSGIPLNIGDCQGLQEALQHVVSEVQSVHPQRVIQADIGDLQGVSGDRDRL 287 Query: 119 LLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKING--NLARFPEKFTQIVDGNVE 173 L + ++ G G V ++ + + S+K G + P F + Sbjct: 288 AQLLSNLVANAIHHGHHDGPVEVTAKIEQGRFNLSVKNPGQIDAQALPRLFEPYSRPAKD 347 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y V +A + L +H V + L Sbjct: 348 TPQAGLGLGLYIVKQIADAHGGELSVSTTAEHGTVFTFSLP 388 >gi|21674513|ref|NP_662578.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21647705|gb|AAM72920.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 545 Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 21/192 (10%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL-------SSMSAIIR 63 M+LV L S I HD + + AI + EL L ++ + + I S+ Sbjct: 167 MELVGQLASGIAHDFNNALAAIIGNTELALKKLDPANPAVSNITDIHTLATRSANLTRQL 226 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKI 118 L F R ++ + D ++ + I DK + + W + + +I Sbjct: 227 LAFARKQMAMPRVLNLTEEVSDCLRLYQRLI--DKNIHLEWHLCDEPIQVKLDPTQLEQI 284 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----ES 174 L NL + A ++ G +T+ + ++ E N L+ P + ++ + E+ Sbjct: 285 LSNLLVNARDAIDGSGCITVRCEGARFEPTDGKTCNPRLS--PGDYARLSITDSGCGIEA 342 Query: 175 TIDSHDIQFYYV 186 ++ H + ++ Sbjct: 343 SVLPHIYEPFFT 354 >gi|146309133|ref|YP_001189598.1| sensory histidine kinase CreC [Pseudomonas mendocina ymp] gi|145577334|gb|ABP86866.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 473 Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 41/219 (18%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM---------------- 67 H++ SP+ AI + ELLD + E Q + RL+ + Sbjct: 265 HELKSPLAAIRGAAELLD-GDMPAEQRQRFVANIQQESARLQNLIERLLHLAQVEQRQGL 323 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 R+A V+ L+ V I +S GE+ L + L NL Sbjct: 324 EERVAVPLAALVEELLQAQQARIVAAGLRIEPAVPANLSLRGERFLLR----QALANLLD 379 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIV---DGNVEST 175 A P GG + I+ + + L G AR E+F + G + Sbjct: 380 NALDFTPPGGCIRIAAERQGERIVLRLFNQGEAIPEYALARLTERFYSLPRPNGGRKSTG 439 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIID---DHNVVLSA 211 + + +Q +A + L ++ + ++L A Sbjct: 440 LGLNFVQ-----EVAELHGGELQIGNVEGGVEARLILPA 473 >gi|283851584|ref|ZP_06368864.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283573118|gb|EFC21098.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 383 Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 27/164 (16%) Query: 24 HDIISPIGAI----HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTG 75 HD+ +P+ A+ L+ D + ++LI + S + L RL G Sbjct: 165 HDLKAPLSALIGLPQVLLDNYDLPDAAADAVRLIEQAGHSMLEMLNQSLVLFRLETGAYV 224 Query: 76 SVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----------ILL 120 + + L D ++ +A ++++VS + ER +L Sbjct: 225 LSPTAVDLADLARRTAARMATMPVARGRKIRVS-LAGRPLAPGERLDYSGDVLLLGPMLQ 283 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 NL + + P GG+VTI + ++ + ++ G PE Sbjct: 284 NLVVNGLEASPMGGEVTIDLVRDRDRVLVAVTNQGE---VPEPI 324 >gi|212702046|ref|ZP_03310174.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098] gi|212674561|gb|EEB35044.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098] Length = 573 Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 27/220 (12%) Query: 18 LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVMQLIR---------LSSMSAIIRL 64 L + + H++ +P+ I+ L+LL G + +LI + RL Sbjct: 348 LAAGVAHEVNNPLAVINEKAGLGLDLLHMSGNFERKERLISLLEAIESTVERARGITHRL 407 Query: 65 K-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLS-----RER 115 F R + + + ++ F+ + V + + + Sbjct: 408 LGFAR----RMEANRQELSVPEVLTETMGFLERGAKNRGVTIGTDFAEGLPDIVSDRGQL 463 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ LN+ A ++P GGKV I+ + + + + PE I + + Sbjct: 464 QQVFLNIMGNALDAVPDGGKVDIACSQTADGGLLVRVTDNGKGMSPEVIKHIFEPFYSTK 523 Query: 176 ID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + +S L Sbjct: 524 KEKGNGLGMFITYGIVRRLGGEITVDSTEGKGTTVSITLP 563 >gi|9662894|emb|CAC01288.1| Blr Regulon Signal Sensor [Aeromonas hydrophila] Length = 473 Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 16/207 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIR-LKFMRLAFGYTGS 76 H++ SP+ AI + E+L E + + L I R L+ +L G Sbjct: 265 HELKSPLAAIRGAGEILAEAPPPEVATRFIGNINLETARMQQLIERMLQLAKLESGQGLD 324 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL------NLFMVAHASL 130 ++ +V++ + +R QV+ E + +++ LL NL A Sbjct: 325 RQAVEPARLGRRVLDARQILAQRRQVTLVAELGEAQKQKWDSLLVEQALGNLLDNALDFS 384 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187 P GG + +S + F ++ G P F + S + + Sbjct: 385 PIGGTLALSGAMEEGGYCFRVRDQGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFAT 444 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 +A ++ RL D V+ L Sbjct: 445 EVARQHGGRLTLANQPDGGVLAELWLP 471 >gi|222081275|ref|YP_002540638.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221725954|gb|ACM29043.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 625 Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78 + HD + + I +LE+++ + +++ L+ + +A +L LAFG Sbjct: 264 LAHDFNNLLTVISGNLEMIEARLQDPKLLSLVLEAQAAADDGAKLTGQLLAFGRRQPLNP 323 Query: 79 SLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLP 131 L+ +G + D + + R V+ + + + + + LLNL + A ++P Sbjct: 324 KLVDIGQLVSSFSDLLRRTLGETIELRTVVTGSMNEALVDGSQLQNALLNLVLNARDAMP 383 Query: 132 RGGKVTISVQ 141 RGG ++I + Sbjct: 384 RGGFLSIEIS 393 >gi|218886793|ref|YP_002436114.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757747|gb|ACL08646.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 591 Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 23/210 (10%) Query: 18 LCSRICHDIISPIGAIHN-SLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRL 69 L + + H+I +P+ AI + LL +++ +Q+I S LK F R Sbjct: 361 LSTYVAHEIRNPLFAIGGFANSLLRSPSLDEAARGKVQVILEESRRLDTILKSILNFAR- 419 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERA------KILL 120 T + L + + + +++ +R+ V D+ + + L+ Sbjct: 420 ---PTSPRTGEVDLNLLARQTMELMSMGFDQRRITVDMQLAP-DIPKAHGDGEMLKQCLI 475 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL A ++P GG++T+ ++ ++ G PE +I + Sbjct: 476 NLVKNAQEAMPAGGRLTVRTGMNQQHVHIAVADTGVGI-PPELHDKIFSPFFSTKEKGAG 534 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 I + E R+ + ++ Sbjct: 535 IGLAMSRKIIEEMGGRVDLQSQVGKGTTIT 564 >gi|229917600|ref|YP_002886246.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469029|gb|ACQ70801.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 422 Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 20/192 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYT 74 S + HD+ +P+ + N ELL+ + + M S + R+ + + + Sbjct: 220 SGVTHDVRTPLAIVRNEAELLELGVVHETEMATTGKSITEEVDRIDRLVNQMLEYSKLSA 279 Query: 75 GSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125 GS+ + ++++I K V + EK+ + +R ++L N Sbjct: 280 GSIPLEMESIQLDELIRRLTPRMSEWFRQKDVTLDLRLEKVSIQADRLAMERVLSNFIRN 339 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNVESTIDSHDIQFY 184 A+ + P GG +TIS+ ++ + + G + G+ + H + Sbjct: 340 AYEASPVGGNITISLTSNR--LEVTDEGKGIDPTIQHSIWDMYVKGDRSN---GHGLGLA 394 Query: 185 YVILLAHENKIR 196 LL + Sbjct: 395 ITKLLLDAQGLS 406 >gi|258405276|ref|YP_003198018.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797503|gb|ACV68440.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 758 Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 15/142 (10%) Query: 22 ICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73 + HD + + AI +L+LL E + + + IR S A ++ F R A Sbjct: 385 LAHDFNNLLHAIRGNLDLLGHNKPEAHPDQQRLATIRSSIRRAERLVQQLLLFSRKA--D 442 Query: 74 TGSVDSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128 + + I + + +++E I ++++ + + ++ +LNL A + Sbjct: 443 SRKQNQDINQVVQESARMLESSIPKMIEIELTLGQGLPLVYADIVQVEQVVLNLGRNAES 502 Query: 129 SLPRGGKVTISVQDSKNENIFS 150 ++P+GG++TI ++ + F Sbjct: 503 AMPQGGRLTIETHYAELDEEFV 524 >gi|222524324|ref|YP_002568795.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|222448203|gb|ACM52469.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 482 Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 19/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L S L A+ L + + H+I +P+ A NSL L+++ I + I R Sbjct: 251 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQQELGRIAR 310 Query: 64 L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER 115 + F R + G S + L + +++ + + ++ I ++ Sbjct: 311 IITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLPAITAHADQ 370 Query: 116 AK-ILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF-PEKFTQIVD 169 + + LN+ + A ++P GG++T+ + ++ I+ PE + + Sbjct: 371 LRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGIAPEHLPHLFE 430 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ R+L + + LL Sbjct: 431 PFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 475 >gi|222053640|ref|YP_002536002.1| histidine kinase [Geobacter sp. FRC-32] gi|221562929|gb|ACM18901.1| histidine kinase [Geobacter sp. FRC-32] Length = 482 Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 22/217 (10%) Query: 18 LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L S I H+I +P+ I ++ ELL + ++ I + + + +M L F Sbjct: 256 LASGIAHEIRNPLNYISLAIDHLKSELLPTCPERSKELEAITDNIKEEVRKANYMVLNFM 315 Query: 73 YTG-------SVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------ 118 G S L G +++D + ++R++V+ DL + Sbjct: 316 NYGRPLKLRTSEVRYADLIGKALPLLQDKL-DEQRIRVAMDIP-ADLPAMQVDAELMRNC 373 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTID 177 L N A ++P GG +T+ + E F L A +I + Sbjct: 374 LFNFITNAAQAMPEGGTITLGAAFAPEEKRFILTFADQGAGIAAGDIGKIFQPYFTTKEA 433 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E+ L + +L Sbjct: 434 GIGLGLAITERIVREHGGELRVNSTVGSGTTFTMVLP 470 >gi|220908951|ref|YP_002484262.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865562|gb|ACL45901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1428 Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 26/143 (18%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------LKFMR 68 L S I HD+ + + I S +LL E +L++ M A R L F R Sbjct: 1066 LASGIAHDLNNMLTPILVSSQLLQRQLPEGRPQELLK--IMEANARRGADLIRQVLTFAR 1123 Query: 69 LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---L 119 G+ + L +I+Q+ E R+ + + +S + ++ L Sbjct: 1124 ------GTEGKRMPLQIKHLLTEIQQICERTFPKSIRIALDIPADLAMISVDPTQLHQVL 1177 Query: 120 LNLFMVAHASLPRGGKVTISVQD 142 +NL + A ++P GG++ + D Sbjct: 1178 MNLCVNARDAMPEGGQLNLRAAD 1200 >gi|162147356|ref|YP_001601817.1| two-component sensor histidine kinase, sensor protein kdpD [Gluconacetobacter diazotrophicus PAl 5] gi|161785933|emb|CAP55509.1| putative two-component sensor histidine kinase, sensor protein kdpD [Gluconacetobacter diazotrophicus PAl 5] Length = 894 Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 17/162 (10%) Query: 16 ALLCSRICHDIISPIGAI---HNSLELLD---EVGIEDEVMQLIRLSSMSAI----IRLK 65 ALL S I HD+ +P+ +I +SL+ D + E++ IR + L Sbjct: 669 ALLSS-ISHDLRTPLSSILGAASSLDSYDALLDKKDRKELLTTIREEAERLSRFVANLLD 727 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119 RL G LG++ I RV + + + + + L Sbjct: 728 MTRLEAGALTPARQPCDLGEVAGSALARASVILRHHRVSLKVAPDLPLVPLDDVLVEQAL 787 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 N+ A P G V I + L G Sbjct: 788 FNILDNAAKYTPEGSMVMIEIAQKGGSLRLRLTDEGPGLPAD 829 >gi|146275720|ref|YP_001165880.1| PAS/PAC sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|145322411|gb|ABP64354.1| PAS/PAC sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 632 Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 57/154 (37%), Gaps = 11/154 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVD---S 79 HD + + A+ + LL+ D++ + A R + +R + + Sbjct: 289 HDFNNVLAAVLGGITLLERKAPLDDLGHRLTEQIRLAAERGAELVRRMMAFARKQELKPV 348 Query: 80 LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL----SRERAKILL-NLFMVAHASLPR 132 + + + + + V +SW DL R + ++ L NL + A ++P Sbjct: 349 YLAPSAVREAVSGLVEQTLGGTVTLSWDCADTDLVFHADRSQLELALVNLVINARDAMPE 408 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 GG + +++ + + + +++ + Sbjct: 409 GGSIHVAIAPAADADRLRIEVRDEGTGIAPGVLE 442 >gi|209883698|ref|YP_002287555.1| PAS/PAC sensor hybrid histidine kinase [Oligotropha carboxidovorans OM5] gi|209871894|gb|ACI91690.1| PAS/PAC sensor hybrid histidine kinase [Oligotropha carboxidovorans OM5] Length = 534 Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 25/172 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + A+ SLEL+ + +D + +++ R L F R Sbjct: 161 IAHDFNNLLMAVMGSLELMRKRLPDDPKLHTFLENALQGARRGATLTQRMLAFAR----R 216 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-------ILLNLFMVA 126 V I + + + + D + ++ + + LLNL M A Sbjct: 217 QDLVQEAIDIPALVRGMTDLLQRSLGPTINIQTQFPLVMAPAFADFNQLEMALLNLAMNA 276 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 ++P+GG+V IS ++ ++ N L P + + + + +D+ Sbjct: 277 RDAMPKGGEVIISAREE------TITENNRLRLPPADYVCLSVQDAGTGMDA 322 >gi|218779811|ref|YP_002431129.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761195|gb|ACL03661.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 495 Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 23/221 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM---SAII 62 + L +L + + + H+I +P+G I +S ELL + + +I S+ Sbjct: 270 AERLASLGEMAAGVSHEIRNPLGIIRSSAELLGKRYDGPNRQLLEVIIEESTRLNDIITD 329 Query: 63 RLKFMRLA---F---GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDLSR 113 L F R F G + + + + + + W + Sbjct: 330 FLNFARPTEPRFQECSVAGVLGKNLAFLAPRLNQDGYHVEQEAPSDLPMVWADPNLLY-- 387 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LN+ + A ++P GG V + + + S G E +I + Sbjct: 388 ---QSFLNILINAMQAMPAGGTVHVKTRIQGEKLSVSFTDEGKGV-TDEAMKKIWNPFFT 443 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + E +D + L Sbjct: 444 TKERGTGLGLCVVRNIIEAHGGSVTIENSEDKGACVRVELP 484 >gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 645 Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 14/138 (10%) Query: 18 LCSRICHDI---ISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK----FM 67 L S I HD+ ++PI I L + I++ +L+ +S +K F Sbjct: 275 LASGIAHDLNNILTPILGIAQILP-MKFPDIDERTRELLKILEDNSKRGSALIKQVLSFA 333 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFM 124 R G + L +I+Q++ ++ + + + + + ++ L+NL + Sbjct: 334 RGLEGKHSILQVNYLLSEIQQMMRQTFPKSIEIRTNISPDLRPVRGDTTQLHQVLMNLVL 393 Query: 125 VAHASLPRGGKVTISVQD 142 A ++P GG +T+ ++ Sbjct: 394 NARDAMPNGGILTLGAEN 411 >gi|220926384|ref|YP_002501686.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950991|gb|ACL61383.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 660 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 41/196 (20%) Query: 51 QLIRLSSMSAI--IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVD 97 QLI S +A L LAF + G D+ +++ I V Sbjct: 322 QLIENSIQAAERGATLTKRMLAF--ARRQELTTGPLDVPELVRGMADLLQRSIGPNIQVG 379 Query: 98 KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 R + D ++ LLNL + A ++P+GG +TI+ + E + + +I G Sbjct: 380 TRFPLQLPLASADPNQLEL-ALLNLAVNARDAMPQGGTITIAA---QEERVGTSEIAGLA 435 Query: 158 ARFPEKFTQIVDGNVESTID----SHDIQFYYV---------------ILLAHENKIRLL 198 P ++ Q+ + +D + ++ ++ A ++ RLL Sbjct: 436 ---PGRYVQLSVTDTGEGMDERTLAQAVEPFFTTKGVGKGTGLGLSMVHGFAEQSGGRLL 492 Query: 199 PEIIDDHNVVLSALLE 214 L Sbjct: 493 LRSTKGQGTTAELWLP 508 >gi|254425627|ref|ZP_05039344.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188050|gb|EDX83015.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1428 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 26/152 (17%) Query: 18 LCSRICHDI---ISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIR----LKFM 67 L S I HD+ ++PI + L + +D +QL++ S+ L F Sbjct: 1064 LASGIAHDLNNILTPIYGVAQ-LLSMQLPDADDPIRQQLQLLKTSAKQGSRMVNQVLSFA 1122 Query: 68 RLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118 R G L ++ + + + ++ + + Sbjct: 1123 R------GKEGDRAPLAIKHLIVELRNFATQTFPKSLTITANIPNDLRMVNADATHLYQA 1176 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 L+NL + A ++P GG++T+S + + F+ Sbjct: 1177 LMNLLVNARDAMPNGGQLTLSAVNLDLDEAFA 1208 >gi|197118651|ref|YP_002139078.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088011|gb|ACH39282.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 661 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 83/219 (37%), Gaps = 17/219 (7%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----II 62 L A+ L + + H+I +P+ I + ELL E+ E + I Sbjct: 438 KLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEEAPIREEVDTIFQQVKRVERIVSN 497 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKI 118 LKF R G+V L +I I ++++ R++++ + ++ + Sbjct: 498 LLKFARREQMEAGAVRLNELLHEIVGQIGHQVSLE-RIEIAEQYAESVAQVEGDADQLRQ 556 Query: 119 LL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTI 176 + NL + A ++P GG +++ Q + + +K+ E Q+ + + Sbjct: 557 VFTNLVLNAVQAMPSGGVLSVRTQQVEPAGSYEVKVGDTGVGIALENLRQVFNPFYTTKA 616 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + E+ R+ E + + +L + Sbjct: 617 NGTGLGLSVSYGIVREHGGRIDVESVPGGGSTFTVVLPR 655 >gi|268317955|ref|YP_003291674.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM 4252] gi|262335489|gb|ACY49286.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM 4252] Length = 647 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 L S + HD+ + I + +L + + +I+ S+ ++ + LAF Sbjct: 266 LVSGMAHDLNNLFVPILLGVRMLAQDTLDPEKRARALGMIQRSAERGADLVRQV-LAF-A 323 Query: 74 TGSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFM 124 G + L ++ ++ + R++ + + ++ L+NL + Sbjct: 324 RGMEGERVPLDVRTIVQEVAHLLRETFPSTIRIETRLDDALWPVQGDATQLQQVLMNLCV 383 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKI 153 A ++P GG++ ++ ++ + + ++ ++ Sbjct: 384 NARDAMPEGGRLLLAAENVEVDPHYARRV 412 >gi|253702488|ref|YP_003023677.1| histidine kinase [Geobacter sp. M21] gi|251777338|gb|ACT19919.1| histidine kinase [Geobacter sp. M21] Length = 468 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 34/223 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQL------IRLSSMSAII------ 62 L + I H+I +P+ I +++ L ++ +L I+ A Sbjct: 250 LAAGIAHEIRNPLNYISLAIDHLKSESLPSCPEKAKELESIANNIKEEVRKANYMVLNFM 309 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLS 112 +L+ R+ + L+ Q+++D + R + + Sbjct: 310 NYGRPLKLRLQRVCY------PELVDK--AMQLMKDRLDERGIEVVRDIPEYLPPMLADP 361 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGN 171 L N + ++P GGK TI + F L + + P+ ++ Sbjct: 362 ELMRNCLCNFISNSTQAMPEGGKFTIGASIAPETGEFRLTFSDEGSGIEPQDLEKVFQPY 421 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + + S L Sbjct: 422 FTTKEAGIGLGLAITERIVREHGGGIAVQSTKGEGTTFSVTLP 464 >gi|294013096|ref|YP_003546556.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292676426|dbj|BAI97944.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 451 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 13/199 (6%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 HD+ +P+ ++ E +++ G + + I + L R G + + L Sbjct: 257 HDLRTPLASLRVRAESVEDEGERARMSETIDEMNRMLEDILSLARA--GRSSEARQKVDL 314 Query: 84 GD-IEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140 + V+EDF+ + V ++ + ++ + L NL ++ G + +SV Sbjct: 315 SALADAVVEDFLELGSPVDLADSERVVADVRPQQIRRALRNLI---ENAIVYGERAHVSV 371 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKI 195 + + + +G + ++G+ + V + E+ Sbjct: 372 ERADGAIRLIVADDGPGISEERMEEMMEPFTRLEGSRNRDTGGAGLGLALVRAIMIEHGG 431 Query: 196 RLLPEIIDDHNVVLSALLE 214 L + S +L Sbjct: 432 ALKLANRAQGGLEASLVLP 450 >gi|226940498|ref|YP_002795572.1| KdpD [Laribacter hongkongensis HLHK9] gi|226715425|gb|ACO74563.1| KdpD [Laribacter hongkongensis HLHK9] Length = 877 Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 23/233 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59 +A++ ++ + L S + HD+ +PI AI L E + D Q + + Sbjct: 639 VAQDALVSMEGERMRNTLLSAVSHDLRTPITAI-AGLAGTLEKKLADPAQQELAHAIHGE 697 Query: 60 -------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTG 106 L RL +G V + +E+V+ + VQV+ Sbjct: 698 ATQMNRLVSNLLDMARL---QSGGVKLRLDWQSLEEVVGSALGQLRPVLARHPVQVALPA 754 Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162 E L + ++L+NL A P G + IS + + G P Sbjct: 755 ELPLLEFDALLIERVLVNLLDNAAKYTPVGSGIRISARLDNGWLRLRVDDEGPGLPEPAE 814 Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F V G ES + L+ + + E + L Sbjct: 815 SLFQPFVRGVRESATSGAGLGLALCRLIVEAHGGTIATENRHEGGARFVVALP 867 >gi|297570384|ref|YP_003691728.1| PAS/PAC sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926299|gb|ADH87109.1| PAS/PAC sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 567 Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 19/185 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL- 55 K + L A+ L + + H++ +P+ +I LL + + E +++I Sbjct: 326 KKAQMLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLIKDDNLTSAQQERLEIIAEQ 385 Query: 56 ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKI 109 SS L F R A G L I + + D +R+++ + + Sbjct: 386 TRRSSTIIKALLSFAREA-RQPGRTRQACDLNGIIEKAIPLLTTDLEKRRIELELELQPL 444 Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E ++++NL + ++ + G++ +S + + + NG PE + Sbjct: 445 PPVIADPGELEQVVINLVLNGMQAIGQEGRIRVSTSTQEQNVLLQVADNGPGI-TPEHRS 503 Query: 166 QIVDG 170 +I D Sbjct: 504 RIFDP 508 >gi|262199743|ref|YP_003270952.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262083090|gb|ACY19059.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 906 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 16/154 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGYTG 75 H++ +P+ +I ++ELL+ D +Q I S + L RL G Sbjct: 551 HELRNPLSSIRAAVELLELGPTSDVDLQRIHKSLMRQTSHMAKLVDGLLDVSRLELGRIT 610 Query: 76 SVDSLIG-LGDIEQVIEDFI----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 ++ G + V++D++ + + S E + +S + A++ L NL A Sbjct: 611 LERQVLDIRGLVSDVLQDYLVSIKERGQTLHSSIATEALPVSCDPARLSQILDNLLANAM 670 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 PR G +T+++Q K E + +++ G Sbjct: 671 QFTPRDGIITVNLQRGKGEAVLTIRDTGAGIAPD 704 >gi|196228647|ref|ZP_03127513.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226928|gb|EDY21432.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 882 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Query: 22 ICHDIISPIGAIHNSLELL-DEVGIEDEV--MQLIRLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + +G I ++E++ ++ ++L+ S+ +K F R G Sbjct: 527 IAHDLNNVLGPIMMAVEVIQNDPRNPGNKGLLELVGTSAKRGSELVKQILSFARGIDGEK 586 Query: 75 GSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERA-KILLNLFMVAHASLP 131 + + ++ ++ D D R +V+ +++ + +ILLNLF+ A ++ Sbjct: 587 TILKMPQLVSEVVKLASDTFPRDITVRSKVAENLPQVEGDATQMHQILLNLFVNARDAMT 646 Query: 132 RGGKVTISV 140 RGG ++I V Sbjct: 647 RGGSISIDV 655 >gi|239907953|ref|YP_002954694.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239797819|dbj|BAH76808.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 821 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 79/210 (37%), Gaps = 13/210 (6%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L + + H+I +P+G I ELL + ++ + + + + A++ K +R + Sbjct: 601 LAAGLAHEINNPLGVIACYAELLRQSLVDPQALDDLAVIERHAVMAKKVLRDLLDFARPR 660 Query: 78 DSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKI-DLSRERA----KILLNLFMVA 126 + G DI+ ++ A +R + + L++ A ++L NL + A Sbjct: 661 PAKPGPCDIKALLSGLARIFEVQAQSRRSSLRLDVPEGIPLAKADAGALEQVLSNLLLNA 720 Query: 127 HASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQFY 184 ++ G G++T++ S++ +L + N P I D + Sbjct: 721 LDAVEPGQGRITLAAAASEDGGQVNLTVADNGPGIPAVDLPHIFDPFFTTKEAGRGTGLG 780 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + E +D V + L Sbjct: 781 LAVAFGLMRDMGGTIEAQNDGGAVFTLTLP 810 >gi|145301167|ref|YP_001144008.1| sensory histidine kinase CreC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853939|gb|ABO92260.1| two-component system blr regulon sensor histidine kinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 480 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 16/207 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIR-LKFMRLAFGYTGS 76 H++ SP+ AI + ELL E + + L I R L+ +L G Sbjct: 265 HELKSPLAAIRGAGELLAEAPPPEVARRFIGNINLETARMQQLIERMLQLAKLESGQGLD 324 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------AKILLNLFMVAHASL 130 + ++V++ + +R QV+ E D S+++ + L NL A Sbjct: 325 RQATEPARLGKRVLDARQIIAQRRQVTLVAELADASKQKWDPLLVEQALGNLLDNALDFS 384 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187 P G V ++ + + F ++ G P F + S + + Sbjct: 385 PAGSTVRLTGEMHADGYRFQVRDQGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFAT 444 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 +A ++ RL + V+ L Sbjct: 445 EVARQHGGRLNLCNQPEGGVLAELWLP 471 >gi|56709140|ref|YP_165185.1| sensor histidine kinase [Ruegeria pomeroyi DSS-3] gi|56680825|gb|AAV97490.1| sensor histidine kinase [Ruegeria pomeroyi DSS-3] Length = 456 Score = 43.7 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIG 82 HD+ SP+ A+ E +++ D ++ I L F R G + Sbjct: 263 HDLRSPLTAMRVRSEFVEDDETRDSMIASIEEMQHMVEETLSFAR---GLADGEPLQSVE 319 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 LG + + + + E + L NL + G + +S Sbjct: 320 LGAFLKTLRQDMPDGFTLAQGERIEVPLRPNAMRRALRNLI---ENAQRYGSEAEVSFAR 376 Query: 143 SKNENIFSLKINGNLARFPEK 163 ++ + + G PE Sbjct: 377 TRGGAVIRVCDRGPGIPEPEL 397 >gi|91203465|emb|CAJ71118.1| similar to two-component sensor histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 384 Score = 43.7 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 11/159 (6%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LL S + H++ +P+ I ELL E +++ + I+ S K R ++ Sbjct: 171 LLASSLAHELDTPLATISGYCELLLEEVHDEKALGKIKTISDQIARCQKATRNLLIFSRK 230 Query: 77 VDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRERAK-ILLNLFMV 125 DS I +I +A ++ R + + + + ++LNL Sbjct: 231 SDSEKKEYHINTLITTILALVEHRLKIHKINIRRAFDKQLPPLLVEGNQIQQVILNLVNN 290 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + +LP GG + I + + E + N PEK+ Sbjct: 291 SVDALPNGGDLFIKTRMNNAEKSVEIVFEDNGTGIPEKY 329 >gi|219847337|ref|YP_002461770.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541596|gb|ACL23334.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 793 Score = 43.4 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 11/129 (8%) Query: 22 ICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73 I HD + + I S+EL +D ++ IR S+ A ++ F R G Sbjct: 430 IAHDFNNILTVITGSVELAMLEIDSDHAIYPELEAIRQSAARAGELVRQLLTFARRQPGQ 489 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDL-SRERAKILLNLFMVAHASL 130 VD + D ++ I ++Q+ E++ + + ++L+NL + A ++ Sbjct: 490 PQLVDVNRQINDTMNMMRRLIGEHIQLQLQLDEHIERVMIDPAQLEQVLINLVVNARDAM 549 Query: 131 PRGGKVTIS 139 P GG++TI Sbjct: 550 PNGGELTIR 558 >gi|94263431|ref|ZP_01287244.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93456161|gb|EAT06300.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 569 Score = 43.4 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 17/214 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR----LKFMRL 69 + + I H+ +P+ AI S +LL E +++++Q+I L F R Sbjct: 345 MAAGIAHEFRNPLAAISGSTQLLAQRLKEQPGQEQLLQIINRECDRLEAAVNDFLLFSRP 404 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAK-ILLNLFMV 125 A L + VI A ++ + +W + ++ K +L+NL Sbjct: 405 ASPRPQWHHLQQLLDESLAVIRQTPAWSQQHRFTWDLPADPMVWADGDQLKQVLINLLAN 464 Query: 126 AHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHD 180 A ++P GG + + ++I+ + PE +I + + D Sbjct: 465 ACQAMPSGGTIHGAAHRRQPGDGQSPGLVIEISDDGPGIAPESQARIFEPYFTTRQDGTG 524 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + + LL Sbjct: 525 LGLAIVHQIIKGHGGEIELASTPGQGTTFTILLP 558 >gi|259419177|ref|ZP_05743094.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259345399|gb|EEW57253.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 769 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 23/194 (11%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77 HD + + AI +LL + G +D LI+ ++ A + + LAF Sbjct: 405 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAAALVSQL-LAFSRKQTLQ 462 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130 ++ + + + + ++V ++ + + + S R+ ++L+NL + A ++ Sbjct: 463 PEVLDVRETLSDLTHLLNRLVGEKVSLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 522 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYY 185 P GG++ + + + P ++ I + + I +Q FY Sbjct: 523 PHGGEIRVETEVVALDTALE---RDRAVVPPGEWVTIQVSDEGTGISPDKLQKVFEPFYT 579 Query: 186 VILLAHENKIRLLP 199 + L Sbjct: 580 TKRTGEGTGLGLST 593 >gi|312891708|ref|ZP_07751217.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295791|gb|EFQ72951.1| integral membrane sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 447 Score = 43.4 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 23/160 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---------------I 62 L S I HD+ SP+G I N LELLDE ++ E ++I + Sbjct: 226 LMSIIAHDLRSPLGNIQNYLELLDEYSLDAEERKIIEKDLLKLTQDTTSMLSKVLSWSKA 285 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-- 120 ++ + + ++L ++E+ I K + +S+ E+ +L Sbjct: 286 QMDGVTVKLNSVNLFEALANTLELEKAIAG----KKGIALSYGVEQTIKIMADVDMLQLI 341 Query: 121 --NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 NL A P GG++ IS N + +K G Sbjct: 342 VRNLINNAIKFTPAGGEIEISASSIHNNCLLMVKDTGTGI 381 >gi|253700575|ref|YP_003021764.1| histidine kinase [Geobacter sp. M21] gi|251775425|gb|ACT18006.1| histidine kinase [Geobacter sp. M21] Length = 661 Score = 43.4 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 15/218 (6%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----II 62 L A+ L + + H+I +P+ I + ELL ED E + I Sbjct: 438 KLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEDAPIREEVDTIFQQVKRVERIVSN 497 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KI 118 LKF R G+V L +I I ++++ V E + A ++ Sbjct: 498 LLKFARREQMEAGTVRLNELLHEIVGQIGHQVSLEGIEIVEQYAESVAQVEGDADQLRQV 557 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTID 177 NL + A ++P GG +++ + + E + +K+ E Q+ + + + Sbjct: 558 FTNLVLNAVQAMPAGGVLSVRTRPLEPERSYEVKVADTGVGIALENLRQVFNPFYTTKAN 617 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E+ + E + D + +L + Sbjct: 618 GTGLGLSVSYGIVREHGGLIDVESVPDGGSTFTVVLPR 655 >gi|193212432|ref|YP_001998385.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085909|gb|ACF11185.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 798 Score = 43.4 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 27/216 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57 ++I + M+L+ L I HD + +G I + EL + +E+ + ++ R + Sbjct: 417 QSILLQIQKMELIGQLAGGIAHDFNNMLGVIMGNTELAMCNDGLDPSVEENLAEIYRAAE 476 Query: 58 MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKI--- 109 SA + + LAF ++ + +++Q I D +A+ K++ W Sbjct: 477 RSAEMTSQL--LAF--ARKQTAVPSVFEVDQAIGDSLAILQRVVGKKIGFDWHPSGAGCK 532 Query: 110 --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + +IL+NL + A ++ GG+ TI ++ + + +L+ G R P ++ QI Sbjct: 533 VRVDPSQFDQILMNLCLNASDAM--GGEGTIVIKAKRLKVDHTLEHPG-GIREPGEYVQI 589 Query: 168 VDGNVESTI-DSHDIQ----FYYVILLAHENKIRLL 198 + I + H + F+ +L + L Sbjct: 590 SVSDSGQGIPEEHQLHIFEPFFTTKVLGKGTGLGLS 625 >gi|308271006|emb|CBX27616.1| hypothetical protein N47_H24380 [uncultured Desulfobacterium sp.] Length = 575 Score = 43.4 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 24/222 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL---- 64 S L +L L + I H+I +P+ +I L E E + I + + RL Sbjct: 354 SQRLASLGSLAAGIAHEIRNPLSSIK-GLATYFIEHNEKEEDKDIAKIMIQEVDRLNRVV 412 Query: 65 -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKI--DLSR 113 + + LA V ++ VIED I + KR + + E+I L + Sbjct: 413 SQLVELA----RPVSISKKPAPLKSVIEDSIKLLKREALEKNIKITIHIPPEEIQIALDK 468 Query: 114 ERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +R ++LLNL++ A S+ +GG++++ V I + G+ + E + D Sbjct: 469 DRITQVLLNLYLNAIESMEKGGRLSVDVSKKDKGAIIKVSDTGSGIK-KEDLALVFDPYF 527 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + ++ + V + L Sbjct: 528 TTKSTGTGLGLAIVYNIIEAHGGKITVQSRPGQETVFTIFLP 569 >gi|254489488|ref|ZP_05102691.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214041995|gb|EEB82635.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 516 Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 26/159 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA------IIRLKFMRLAFGYTG 75 I HD + + I +LELL+ G + + LIR + SA RL Sbjct: 148 IAHDFNNLLTVIVGNLELLEMRGANPQQLALIRDALESAELGADLTSRLMIF------AR 201 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKI---LLNLFMV 125 D+ QV D +A+ +R +++ + + + ++ ++NL + Sbjct: 202 KSHLKPERSDLRQVCSDTLALLERTVGATFDIKIDFAENLDTVMIDPVQLKSAVMNLALN 261 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKIN----GNLARF 160 A ++ G++ +S+Q+ ++ F + G+ R Sbjct: 262 ARDAMGTSGELLVSLQNVTIDDTFMAEETDMEAGDYVRL 300 >gi|226228576|ref|YP_002762682.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226091767|dbj|BAH40212.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 423 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 10/151 (6%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLKFMRL 69 +LVA + + + HDI + + + +S ++LD ++DE ++ IR A ++ + L Sbjct: 205 ELVAAMAAGMAHDIANVVQVMTSSADMLDGHELDDETRRVVSDIRTVGAQASATVRTL-L 263 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLF 123 A G D + + +++ E ++ A + ++NL Sbjct: 264 AMGRQQVEDEDGAAPFGLDRMTHLLRALVGRRITLVVEDGARNKPAASRLQLEQAVINLS 323 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + A ++P GG + + D + +++ Sbjct: 324 LNARDAMPSGGTLHLRTADVDAGGVRGIELQ 354 >gi|330504289|ref|YP_004381158.1| sensor histidine kinase [Pseudomonas mendocina NK-01] gi|328918574|gb|AEB59405.1| sensor histidine kinase [Pseudomonas mendocina NK-01] Length = 482 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 28/213 (13%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + L S I HD+ +PI + +ELLD+ ++ + + L A+ +K Sbjct: 282 SQLFSAISHDLRTPITRLRLRVELLDDESLQRKFGRDLDDLELLVKGALQCVK------- 334 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + I D+ ++ I RV + + + A + + NL Sbjct: 335 -DTDIHENIEPVDLNHLLHGLIEPYLGTGRVTLDGAARAVYPGKPLALQRCIGNLL---D 390 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 +L G + + ++D + + G +K Q+ + + + Q Y + Sbjct: 391 NALKYGERAHLHIEDDDEAFVLHVDDEGPGV-PEQKLEQVFEPHFR---LASQQQGYGMG 446 Query: 188 L-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L LAH + L + D + ++ L + Sbjct: 447 LGIARNLAHSHGGELSLRNLRDGGLRVTLWLPR 479 >gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159] gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159] Length = 421 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 26/216 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ----------------LIR---LSSMSAII 62 + HD+ +P+ A+ +E L + + D + L+ + + Sbjct: 205 VSHDLRTPLAALQALVETLLDGALADPAVAEDFLRRIAVEVEHMTRLVNQLLELTKAESG 264 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLN 121 +L+ R+ + + + + + V ++ ++L N Sbjct: 265 QLQLARVPTDLAELARATLRRFEPRAASKGIALTVQVAPEL---PPVACDPERIGQVLAN 321 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDS 178 L A P GG++T+ + + E I ++ G E F + G+ + Sbjct: 322 LLDNALKFTPAGGQITVEIAAASGEAIVRVRDTGPGIPADELDRVFERFFKGDRARSGGG 381 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + R+ E ++ L Sbjct: 382 SGLGLAIVKHLVQLHGGRVWAESPPGGGAIVGFALP 417 >gi|116747570|ref|YP_844257.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116696634|gb|ABK15822.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 571 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRL 64 L + + + I H+I +P+ A+ ++++L++ G +M +I + Sbjct: 343 LERLVFAGRIAAEISHEIKNPLAAMSGAVQMLEDESIPDGSRARLMSIIHREIDRMNSLV 402 Query: 65 K-FMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117 K F+ LA G + + + D+ Q I D ++ RV + + ++ Sbjct: 403 KDFLWLAKSTHGPENVENVPVCDLIQEILDLLSARNRVASEHVIKTAFAASPISRIDPHH 462 Query: 118 ---ILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFP-EKFTQIVD 169 I+ NL + A ++P GG +TI+V + + I+ + + P + T+I + Sbjct: 463 FRQIVWNLLVNALDAMPGGGHLTIAVGLHPSGDGSGRETRIDISDSGSGIPRDARTRIFE 522 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + + V L + R+ ++ Sbjct: 523 PFFTTKSQGTGLGLSIVYHLVEKANGRIEVTHHEEPC 559 >gi|99081069|ref|YP_613223.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99037349|gb|ABF63961.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 769 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 23/194 (11%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77 HD + + AI +LL + G +D LI+ ++ A + + LAF Sbjct: 405 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAAALVSQL-LAFSRKQTLQ 462 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130 ++ + + + + ++V ++ + + + S R+ ++L+NL + A ++ Sbjct: 463 PEVLDVRETLSDLTHLLNRLVGEKVSLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 522 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYY 185 P GG++ + + + P ++ I + + I +Q FY Sbjct: 523 PHGGEIRVETEVVALDTALE---RDRALVPPGEWVTIQVSDEGTGISPDKLQKVFEPFYT 579 Query: 186 VILLAHENKIRLLP 199 + L Sbjct: 580 TKRTGEGTGLGLST 593 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 24/216 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSSMSAIIRL-KFMRLAFGY 73 + HD+ SP+ AI S ELL + E E + IR S+ + + LA Sbjct: 798 VSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASID 857 Query: 74 TGSV-----DSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAKILLNLFMV 125 G++ + + D ++ E A +K +Q+++ E LS ++ +IL L + Sbjct: 858 AGTLSVQAHPQRVDELVRDARELFEPH-AAEKGLQLAFEVEPGLILSCDKERILQALGNL 916 Query: 126 AHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----DS 178 ++ P GG + + + L + P + + + Sbjct: 917 LSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYWHGVQNKREG 976 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 H + + + R+ E S L Sbjct: 977 HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 1012 >gi|322435171|ref|YP_004217383.1| histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321162898|gb|ADW68603.1| histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 657 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 8/143 (5%) Query: 79 SLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLP 131 S I L ++ + + D + V+V E + R + +LNL + A ++ Sbjct: 498 SEIDLREVVERVVDLTGAEMAEHNVEVRCALEPAVMVRADGEMLRQAMLNLMLNAMQAME 557 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191 +GG + + V+ + + + G PE +I + + I + Sbjct: 558 QGGILRVGVRRDGDTALLVVADEGPGI-PPELMPRIFELYFTTKPKGSGIGLAMTYRIIQ 616 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + + + L Sbjct: 617 MHGGAMEVTSEVGAGAAFTMRLP 639 >gi|258592608|emb|CBE68917.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 441 Score = 43.4 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 18/220 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL----------SSMS 59 L AL L + + H+I +P+G I + +EL L + + Q I ++ Sbjct: 218 KLSALGTLSAGLAHEINNPLGIITSRVELALMDAQETEIPKQFIDDLKVIEKHAQRAARV 277 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 A L F R A G S+D + + +IE + ++ V + + Sbjct: 278 ARGLLSFSRPATGQRLSLDMNGVIEESLLLIERQLEKEQIVLERRLAPSLPKVKGNVSQL 337 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVES 174 ++LLNLF A ++ GG++ + + ++ + + PE QI D + Sbjct: 338 EEVLLNLFTNAREAMTAGGRLRVESRLGADDRTVQILVADTGDGVPEMLVQQIFDPFFTT 397 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ RL + L Sbjct: 398 KQNGTGLGLSISYGIVKEHGGRLDVRSEAGNGTTFVMTLP 437 >gi|303246344|ref|ZP_07332624.1| histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492407|gb|EFL52279.1| histidine kinase [Desulfovibrio fructosovorans JJ] Length = 384 Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 39/222 (17%) Query: 24 HDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYT 74 HD+ +P+ A+ L + D +V++LI + S + L RL G Sbjct: 165 HDLKAPLSALV-GLPQVLLDNYDLPEAAADVVRLIEQAGHSMLEMLNQSLVLFRLETGSY 223 Query: 75 GSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERAK----------ILL 120 + L D+ + +A RV + + R+ + +L Sbjct: 224 VLAPKPVDLADLTRRTAARLAGMPVARGRVIRTTLDGRPLTPRDHLEYKGDGLLLGPMLQ 283 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-------IVDGNVE 173 NL + A + P G V + ++ + + ++ G PE + Sbjct: 284 NLLVNALEAAPSGNDVAVDLRPQPDRVVIAMTNPGE---VPEAIRDRMFEKYVTMGKRGG 340 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + Y +L A + + + ++ L + Sbjct: 341 TGLGA-----YSAMLAARAHGGGIALDASVPGQTTVAVTLPR 377 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 24/216 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSSMSAIIRL-KFMRLAFGY 73 + HD+ SP+ AI S ELL + E E + IR S+ + + LA Sbjct: 761 VSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASID 820 Query: 74 TGSV-----DSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERA-KILLNL 122 G++ + + D ++ E A +K +Q+++ E + +ER + L NL Sbjct: 821 AGTLSVQAHPQRVDELVRDARELFEPH-AAEKGLQLAFEVEPGLILSCDKERILQALGNL 879 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----DS 178 A P GG + + + L + P + + + Sbjct: 880 LSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYWHGVQNKREG 939 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 H + + + R+ E S L Sbjct: 940 HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 975 >gi|332527231|ref|ZP_08403299.1| osmosensitive K+ channel signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332111651|gb|EGJ11632.1| osmosensitive K+ channel signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 467 Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 16/227 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSS 57 +A+ + S L L S I HD+ +P+ A+ + L L IR S+ Sbjct: 214 VAQQSALQIESERLRNSLLSAISHDLRTPLAALVGLADTLAIAPPGPAPRGLVDAIRESA 273 Query: 58 MSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKID 110 L RL G + L ++ + V V+ Sbjct: 274 RRMAALVGNLLDMARLQAGAVRLRRAWQPLEEVVGSALAACQPVLQGRPVTVALADGLPL 333 Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKF 164 LS + ++L+NL A P G + I + + G R F Sbjct: 334 LSLDAVLFERVLVNLLENAARYTPPGSTLVIRAEALDQTVRLVVDDQGPGLPPGREEALF 393 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + G ES + + + + + V A Sbjct: 394 EKFERGERESATPGVGLGLAISRAIVQAHGGTIRGANRLEAGRVAGA 440 >gi|88860969|ref|ZP_01135604.1| sensor protein RstB [Pseudoalteromonas tunicata D2] gi|88816897|gb|EAR26717.1| sensor protein RstB [Pseudoalteromonas tunicata D2] Length = 427 Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 39/169 (23%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLIRLSSMSAIIR 63 LL + + HD+ +P+ I L+ L+EV G + + M L+ Sbjct: 213 LLSTAVSHDLRTPLARIRFGLDTLEEVVDDKHRNRLQQKLGKDVDEMTLL------VEAL 266 Query: 64 LKFMRLAFGYTGSVDSLIGLG----DIEQVIEDFIA--VDKRVQVSWTGE----KIDLSR 113 L F RL + L ++ ++I + I ++V++ ++ ++ R Sbjct: 267 LNFARL-------DQQTLTLKKVSVELVELINECIESKQSEKVEIGFSCSASQTRVIADR 319 Query: 114 ERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFP 161 K++ N + ++ G GKV I+++ KN IF + NG Sbjct: 320 NYLKMVFN--NIIQNAINYGQGKVIITLESDKNSFIFRVSDNGKGIAVD 366 >gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 443 Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 20/214 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSM-----SAIIRL-KFMRLAFG 72 I H++ +PI ++ E L E + D+ + L R+S + L + R+ G Sbjct: 230 ISHELRTPIASLKLLAETLKEGAMADQEVAADFLNRISVEADKMGQLVDELGELSRIESG 289 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID-LSRERA------KILLNLFM 124 + G + + + R +++ +D L RA ++L+NL Sbjct: 290 AAPLDKRPMDAGAVMTTVVGRLQNQADRAKLTLEVATVDGLPAVRADAGRIEQVLMNLTH 349 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181 A P GG++T++ S+ + G P F + + + + Sbjct: 350 NAIKFTPAGGRITLTAGISEKGIEIKVTDTGAGITADDLPRIFERFYKADKARSGGGTGL 409 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + H + + E +S L K Sbjct: 410 GLAIAKHIVHAHGGEIRAESSPGQGTTISFTLPK 443 >gi|148557326|ref|YP_001264908.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148502516|gb|ABQ70770.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 630 Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 13/157 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 I HD + + I S ELL + + E ++ I ++ A + LAFG S+ Sbjct: 288 IAHDFNNLMTVIRGSAELLQKEDLAPEKRRRYVRAITETADKATALTTKL-LAFGRRQSL 346 Query: 78 DSLI-----GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 + L +V+ + V++ + + + A++ LLN A + Sbjct: 347 KPEVLDPGSRLDAFGEVLARTLGSPIEVRLDLAPDLWPIEADAAELETALLNAAFNARDA 406 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +P GG++TIS ++ +E+ + I + P + + Sbjct: 407 MPGGGRLTISARNVVDEHAVRIAITDSGQGIPAEMLE 443 >gi|84502459|ref|ZP_01000595.1| FixL-related histidine kinase [Oceanicola batsensis HTCC2597] gi|84389271|gb|EAQ02068.1| FixL-related histidine kinase [Oceanicola batsensis HTCC2597] Length = 509 Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 10/144 (6%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAFGYT 74 I HD + + I +LELL+ D+ LI + +A L F R + Sbjct: 147 IAHDFNNLLTVIIGNLELLEMSDAADKCGALISDALEAAEVGADLTSRLLVFARKSTLNA 206 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 D + ++ I ++ S+ + + + ++ +LN+ + A ++P Sbjct: 207 EVTDLNAEVSKAVAMLRRTIGAHIAIERSFAPDLWQTTIDATQLQTAVLNIALNAQDAMP 266 Query: 132 RGGKVTISVQDSKNENIFSLKING 155 GGK+T+ ++ ++ + + G Sbjct: 267 AGGKLTLETRNMALDDSYVAQEIG 290 >gi|289668763|ref|ZP_06489838.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 951 Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL E G D + +++ + S+ A + + LAF Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLDSYVEMAQSSAARATALTQRL-LAFSRRQ 641 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + + + + D IA ++ D + + + LLNL + A Sbjct: 642 TLAPTAVDVEALVRDMHDIIARTLGPSIALQLRPADEAWQVLVDAPQLENALLNLCINAR 701 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 702 DAMPDGGELTISLHN 716 >gi|294664668|ref|ZP_06730002.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605552|gb|EFF48869.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 951 Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL E G D + +++ + S+ A + + LAF Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + + + + D IA ++ D + + + LLNL + A Sbjct: 642 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 702 DAMPDGGQLTISLHN 716 >gi|161528807|ref|YP_001582633.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosopumilus maritimus SCM1] gi|160340108|gb|ABX13195.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosopumilus maritimus SCM1] Length = 618 Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 12/153 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLS----SMSAIIRLKFMRLAFG 72 L +RI HDI +P+ I + ELL I++ + I S + L+++R Sbjct: 415 LSARISHDIRNPLAIIKSEFELLKLQKQIDENDFRRIDTSINRITHQLDDVLEYLR---- 470 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVAHAS 129 T V S L ++ + D + + V+++ ++I + ++ K IL+NL + + Sbjct: 471 DTPLVYSKFNLTELVTEVIDTLQIPSNVKITIKDDEIFMIGDKDKINIILVNLIFNSIQA 530 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 L GG + I + + +E + ++ +G Sbjct: 531 LEDGGDIDIILSKTNSEIVIQIRDSGIGITIKP 563 >gi|149177151|ref|ZP_01855758.1| probable sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148844043|gb|EDL58399.1| probable sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 264 Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 31/167 (18%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEV-------MQLIRLSSMSAI----I 62 A L + H+I +P+ + +LELL D ++ ++ ++ Sbjct: 48 ATLAGGLAHEIKNPLSTMSMNLELLTEDLETLDVPAKHRMLKKVESVQKECKHLQDILDA 107 Query: 63 RLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGE-KIDLSRERA- 116 L+F R LA + L D+ DF R + + DL + + Sbjct: 108 FLQFARVGKLALSASN-------LNDLVSDFIDFFRPQAREASIEISPHFDADLPQVQVD 160 Query: 117 -----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++L+NL + ++P GG + + + NG Sbjct: 161 QALFRQVLMNLALNVIQAMPDGGLIELQTSHKDGMVYLDIIDNGKGI 207 >gi|329765965|ref|ZP_08257527.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137514|gb|EGG41788.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 540 Score = 43.0 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 25/159 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE----DEV----MQLIRLSSMSAIIR----LK 65 L R+ HD+ +P+ I SL+LL + + D+V ++LI S + L Sbjct: 332 LSGRLAHDLRNPLSVIKISLDLLKQSPADTKISDDVTTKRLELIESSVERISHQIDDVLD 391 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKI---L 119 ++R + + I ++I I +++ +G +++ + KI Sbjct: 392 YVR-------NSPLKLSRRSIRKIILGSIEKISVPHNIKILVSGLDAEINCDYIKIDAAF 444 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 +NL + + + P GG + I ++ ++ I +G+ Sbjct: 445 INLILNSIQANPEGGTIEIKIKSDHDDVIIDFIDSGSGI 483 >gi|119511699|ref|ZP_01630804.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119463684|gb|EAW44616.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 583 Score = 43.0 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 42/201 (20%) Query: 18 LCSRICHDI---ISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK----F 66 L S I HD+ +SPI + L L L E ++ ++ L+ ++ ++ F Sbjct: 218 LTSAIAHDLKNILSPIMTVAQLLPLKHPQLSESSLQ--MLNLLETNTKKGTDLVQQIQSF 275 Query: 67 MRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNL 122 R F GS+ + L DIEQ I+ + +++ + E + +A++ L+NL Sbjct: 276 TR-NFQGKGSIVLVANLSQDIEQTIKQILPKSIESEINISSEIEFVRGNQAQLHEVLINL 334 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 + A ++P GGKV IS G+ FT+ G Sbjct: 335 LVNARDAMPEGGKVEIS---------------GHKVLIDASFTKTHIGAKVGE------- 372 Query: 183 FYYVILLAHENKIRLLPEIID 203 Y+++ + I + PE+I Sbjct: 373 --YLVITVSDTGIGMSPELIA 391 >gi|77748602|ref|NP_642000.2| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 951 Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL E G D + +++ + S+ A + + LAF Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + + + + D IA ++ D + + + LLNL + A Sbjct: 642 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 702 DAMPDGGQLTISLHN 716 >gi|327402554|ref|YP_004343392.1| PAS/PAC sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] gi|327318062|gb|AEA42554.1| PAS/PAC sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] Length = 577 Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 22/157 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL--------KFMRLA 70 I H++ +PI +I SL+LL++ + E +QLI S RL ++ Sbjct: 363 ISHELKTPISSIKMSLQLLEKEAGGIVNPEQLQLI-HSIKEDSDRLLKITGELLNLSQIE 421 Query: 71 FGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKI--------DLSRERAKILLN 121 G V D+ +E +R QV+ + D+ + + +L+N Sbjct: 422 TGNIQLVLQSSSPHDMVSHAVEAATKEAERYQVNIQVNEAEKISEIFVDMDKTQW-VLIN 480 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 L + A P GG VT+S++ F++ G Sbjct: 481 LLVNAIHYSPIGGTVTVSLEQQGTSVRFAVSDKGKGI 517 >gi|218782152|ref|YP_002433470.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763536|gb|ACL06002.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 609 Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 14/161 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-K 65 L S L A+ L S++ H++ +P+ I N+LELL E + I ++S +R+ + Sbjct: 383 LQSEKLAAMGKLTSQLAHELNNPLFGIMNTLELLKTEIPETSKRRKILDMALSETVRISE 442 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRER 115 ++ ++ + DI ++E+ + + +R ++ E + S+ + Sbjct: 443 MLKKMLSFSKPDQEERQITDINTILEELLLLHERQLQENDVKVVRDLTEGLEPVMASKNQ 502 Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + LN+ A ++ GG TI+ + + L G Sbjct: 503 LRQVFLNVIANARDAMQEGGTFTITSRAQGDFIYIDLADTG 543 >gi|310824787|ref|YP_003957145.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397859|gb|ADO75318.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 555 Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-EVGIEDEV-------MQLIRLSSMSAIIRLKFMRL 69 + S I HD+ + + A+ LE+L + MQ++ + +F R Sbjct: 197 MSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLMQIVSDAGTRVRHLQEFSRQ 256 Query: 70 AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAKIL------ 119 F + L G+ + ++ D I R V++ E L + Sbjct: 257 RFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIENEVPVLPAVNGEAADLRYVF 316 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 LNL + A ++P GG V + ++ + +++ G Sbjct: 317 LNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQDHL 360 >gi|256830706|ref|YP_003159434.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579882|gb|ACU91018.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 586 Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 21/219 (9%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS---SMSAIIRL 64 L AL L + + H+I +P+ +I L + +D +I+ + + L Sbjct: 366 RLTALGNLAAGVAHEIRNPLSSIKGFATYLAGKVQGQDQDAARAMIQETDRLNRVVSELL 425 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDL-SRERA 116 +F R G D L + + + D + + T ++ L Sbjct: 426 EFARP--GEMKLRDE--DLAQVVERALRLVRADVTAKNVAVHFEQAGTLPRVPLDPERFT 481 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQIVDGNVEST 175 + LLNLF+ A ++ +GG + I+ + +L+I E I + + Sbjct: 482 QALLNLFLNAVQAMDQGGTLRITAAQEPDAGGVALRIADTGHGMAAELVPDIFNPYFTTK 541 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + E + V + +L Sbjct: 542 SSGTGLGLAIVHRIIEAHGGEIKVESVVGQGTVFTLMLP 580 >gi|255589574|ref|XP_002535010.1| two component histidine kinase, putative [Ricinus communis] gi|223524204|gb|EEF27375.1| two component histidine kinase, putative [Ricinus communis] Length = 479 Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 16/175 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + + N L++L M++I A+ R L F R Sbjct: 133 HDFNNLLSVLSNGLQILAMQTRTPLDMKMI-EGMRRAVERGASLTQQLLSFARQQPLQAQ 191 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVAHASLPR 132 D +GD E ++ +++ + + A+ LLNL + A ++P+ Sbjct: 192 VYDLNALIGDFEPMLRRACNQQIHCELALHAREAFALVDAARFEAALLNLVVNAVDAMPQ 251 Query: 133 GGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 GG +T+ + ++ + + +G+ R + + + ++ ++ Sbjct: 252 GGVITVMTEFIESHVSVTAALPSGSYIRVS---VADTGSGMPEDVLAQALEPFFT 303 >gi|294625165|ref|ZP_06703808.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600537|gb|EFF44631.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 951 Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL E G D + +++ + S+ A + + LAF Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + + + + D IA ++ D + + + LLNL + A Sbjct: 642 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 702 DAMPDGGQLTISLHN 716 >gi|159899976|ref|YP_001546223.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893015|gb|ABX06095.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 544 Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 19/212 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + + + H+I +P+ I + LEL+ + + + + R+ RL + Sbjct: 318 MAASLAHEINNPLAIIRSGLELVAQQHTPGTALGDLVQGLDEEVARI--ARLLYTLVNFY 375 Query: 78 DSLIG--LGDIEQVIEDFIAVDKRVQVS------WTGEKIDLSRERA------KILLNLF 123 D+ +I + + + Q+ + DL ++L+NL Sbjct: 376 QPNNDGVPPDLNHLIISLMHIT-KPQLDKANVKLYQELATDLPAPNISSDACKQVLINLV 434 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182 A ++P GGK+TI K + +++ +G PE +I + + + + Sbjct: 435 RNAIDAMPDGGKLTIRTAHQKGQIFVNVEDSGIGI-PPEHRERIFEPFFSTKGVTGTGLG 493 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + + E I D + + Sbjct: 494 LSVVYGILQQVGGAISVESIVDKGSNFTLRIP 525 >gi|86158330|ref|YP_465115.1| signal transduction histidine kinase NtrB [Anaeromyxobacter dehalogenans 2CP-C] gi|85774841|gb|ABC81678.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-C] Length = 747 Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 77/191 (40%), Gaps = 22/191 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----K 65 L AL + + + H+I +P+ AI +++ LD + ++ + + RL + Sbjct: 477 RLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVN-RLNGVVSQ 535 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVS---WTGEKIDLSRER 115 F+ + + + + +V+E R+ + W + + Sbjct: 536 FLDY----SRPLKPSLAPTQVNEVLEKTFKLLQAEVPEAVRLDLDLAEWLPRVQADAEQL 591 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ LNL + A ++PRGG++T+S + +++E F + +F G + Sbjct: 592 KQVFLNLALNAFQAMPRGGRLTVSTRLARDELAFWREGARRADLVEIRFRDTGPGIPDDA 651 Query: 176 IDSHDIQFYYV 186 +S + FY Sbjct: 652 RESIFVPFYTT 662 >gi|260772412|ref|ZP_05881328.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio metschnikovii CIP 69.14] gi|260611551|gb|EEX36754.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio metschnikovii CIP 69.14] Length = 483 Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 21/167 (12%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM----SAIIRL 64 LL S + HD+ +P+G I + L + I DE++Q I S L Sbjct: 257 STLLAS-VSHDLKTPLGTIIGAATTLADNSVVLSSAIRDELLQSIAEQGRRLNRSLTKLL 315 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQ---VSWTGEKIDLSRERA---K 117 R TG++ + + E++I +A + R+ + +T + + + + Sbjct: 316 DITRYT---TGALVPKLDWVEPEELIGSVLASLNSRLTFHHIQFTSTPMLVELDSLLIEQ 372 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++LNL A PRG ++TI+ + I ++ NG PE Sbjct: 373 VILNLLENAIKYTPRGSQITITTDYTNGRFILTVADNGPGVPEPELI 419 >gi|46581554|ref|YP_012362.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450976|gb|AAS97622.1| sensory box histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|311235198|gb|ADP88052.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris RCH1] Length = 553 Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 32/238 (13%) Query: 1 MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEV--- 49 + L S L A+ L + I H+I +P+ AI NSL L +++ Sbjct: 253 ITNRTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSL--LRLPTLDETARGK 310 Query: 50 MQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQV 102 +Q+I S L+ F R T S L + + + +A +R+ Sbjct: 311 VQVILEESRRLDNILRSILNFAR----PTTSKAGKADLNGVVRQTLELMAFGFDTRRITS 366 Query: 103 SWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 DL R R + L+NL A ++P GG +T+ + + +++ +G Sbjct: 367 ELALA-ADLPRVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGE 425 Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + I + + ++ ++ L Sbjct: 426 GI-PAEMHERIFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482 >gi|160936027|ref|ZP_02083400.1| hypothetical protein CLOBOL_00923 [Clostridium bolteae ATCC BAA-613] gi|158440837|gb|EDP18561.1| hypothetical protein CLOBOL_00923 [Clostridium bolteae ATCC BAA-613] Length = 659 Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 7/104 (6%) Query: 117 KILL---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDG 170 K+LL NL A + P G +TIS ++ + G P F + G Sbjct: 549 KLLLLFENLIYNAISFTPEDGVITISPCLDQDGVTIRVSDTGMGIEPEHLPHIFERFYSG 608 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +++ +S + Y + E + E + V + + Sbjct: 609 RPDAS-ESSGLGLYIARITVEELGGSIHAESVKGQGSVFTVRIP 651 >gi|148262576|ref|YP_001229282.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396076|gb|ABQ24709.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 491 Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 83/224 (37%), Gaps = 24/224 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 + L ++ + + I H+I +P+ I +++ ++ D+ D +++ Sbjct: 264 ADRLASVGEMAAGIAHEIKNPLTGIASAITIIKDDFSPSDPRTEIVNEVLEQVSRLDKTV 323 Query: 64 --LKFMRLAFG-YTGSVDSLIGL-GDIEQVI------EDFIAVDKRVQVSWTGEKIDL-S 112 L F FG + + I + +++ + ++K++++ + + Sbjct: 324 NDLLF----FGKPSQPEPTYIDINATLKKTLMFASRHRGSKDIEKKLELQDDLPPVYVDP 379 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDG 170 ++ ++ LNLF+ A ++ +GG +TI + + + + + P+ +I Sbjct: 380 KQIQQVFLNLFLNAVQAMYQGGVLTIKSSLLQKDCTWVEVSVADTGQGIPPQILEKIFTP 439 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L ++ L D + + L Sbjct: 440 FFTTKAQGTGLGLAICHKLVTQHGGTLSVASEDGKGTIFTVALP 483 >gi|254503352|ref|ZP_05115503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222439423|gb|EEE46102.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 472 Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 16/212 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS----AIIRLKFM 67 A L + + H++ +P+ + + L D+ + ++ + LI S A L Sbjct: 257 ARLAAGLAHEVRNPLAGMSAATSTLRRFGDDKTVREQTIDLIDRGLQSIDHVAASMLSTY 316 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLSRERAK-ILLNLF 123 R G L D+ +I + K+V +S+ E S E + I+LNL Sbjct: 317 RPPEGNRDLKPD--DLNDLRTLINPKVRA-KQVDLSFQSELAETYPASAEAVRQIVLNLL 373 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 + A + P G V + + + + +G E + G + + Sbjct: 374 LNAIDATPVGSTVAFESKLIEEQLTIKVSDSGPGLPG-EALNVLTGGTTPEKPQTRRLGL 432 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V L + RL V++ + K Sbjct: 433 WLVHQLIDDVNGRLAISTRPQSGTVITITIPK 464 >gi|329848555|ref|ZP_08263583.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843618|gb|EGF93187.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 946 Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 24/179 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSA-IIRLKFMRL-AFGYTGSVDSL 80 HD + +G I SL++L G+ E Q +I + SA R+ RL AF Sbjct: 596 HDFNNLLGPIIGSLDMLQRRGVGGEREQRMIANALQSADRARVLVQRLLAF--ARRQPLQ 653 Query: 81 IGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 D++ +IE RV++ + ++ LLNL A ++ Sbjct: 654 AEAVDVKGLIEGMADLVASTSGPTIRVELDLAPNLPSARADANQLEMALLNLAGNARDAM 713 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----SHDIQFYY 185 P GG++ I+ E P + ++ + +D + ++ ++ Sbjct: 714 PDGGRLVIAAAQEVVEAGHH-----RANLAPATYIRLSVSDSGLGMDTSTLARAVEPFF 767 >gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAFGY 73 I H++ +P+ +I ELL ++ + E + + S+ L + RL G Sbjct: 306 ISHELRTPLTSIIAFTELLLNDPRLAPEQRESLSEVLESSQKLLGMITNLLDYSRLEAGK 365 Query: 74 TGSVDSLIGLGD-IEQVIE--DFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 ++ L D I + +A KR+ +S +++LLNL Sbjct: 366 VKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMDCAPEVPLVHADPLRISQVLLNLLSN 425 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182 A P GG+V + + + E +++ G E F G + + + Sbjct: 426 AVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPEEEQELIFQPFRQGREKGRPEGWGLG 485 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L + R+ E H + L Sbjct: 486 LALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517 >gi|319791417|ref|YP_004153057.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] gi|315593880|gb|ADU34946.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] Length = 467 Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED------EVMQ-LIRLSSMSAIIRLKFMRLAFGYT 74 I HD+ +PI + E++D+ + M L+R + R G T Sbjct: 267 ISHDLQTPITRMRLRTEMMDDEHDRTKFRQDLDAMNSLVREGVT-------YARTLHGAT 319 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132 + +E ++ D+ K V + + R A +I++NL +L Sbjct: 320 EPPLRMDADALLESMLADYEDAGKTVHLEGKAGTPIVGRPNAMRRIVMNLI---DNALIF 376 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 G V + VQ + ++ NG E Sbjct: 377 GSDVRVRVQPGDGQLAIAVVDNGPGIPPDEL 407 >gi|288959081|ref|YP_003449422.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911389|dbj|BAI72878.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 748 Score = 42.6 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 10/102 (9%) Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSR--ERAKI---LLNLFMVAHASL 130 +++ LGD + + D + R + W ++ + ++ +LNL + A ++ Sbjct: 458 PTVVDLGDSLRRMADLLERSIRADIALDWDIAPAPMAVAVDPVQLEMAVLNLVLNARDAM 517 Query: 131 PRGGKVTISVQDSKNENIFSLKI--NGNLARFPEKFTQIVDG 170 P GG++ I+ +++ G R P+ + D Sbjct: 518 PGGGRIRIAAAPGPEPRSARIEVSDTGAGMR-PDVIARAFDP 558 >gi|117617519|ref|YP_858399.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558926|gb|ABK35874.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 463 Score = 42.6 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI ++ E LDE ++ + Q ++ L F R Sbjct: 267 ISHDLRTPITSLRLRTEFLDEGEDKERIQQTLQQMEQMLAATLSFAR-------EEGQQE 319 Query: 82 GLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRG 133 + +E + +D+ + V G+++ R ++L NL ++ Sbjct: 320 ATRELDLVSLLESLCDDYADTGQPVTCLAEGKQVYACRANTLRRVLQNLI---GNAIKYA 376 Query: 134 GKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHDIQFYY--VIL 188 G +S++ + +E + + G AR + F V + +S + Sbjct: 377 GSAEVSLERTDSELVIRVCDQGPGIDPARLEDVFKPFVRLDEARNTESGSVGLGLAIART 436 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 L H++ L + + L Sbjct: 437 LVHQHGGELTLHNREQGGLEARISLP 462 >gi|146283221|ref|YP_001173374.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145571426|gb|ABP80532.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 561 Score = 42.6 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 23/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----Y 73 I HD + + I L++LD + + +M +R ++ + + LAF Sbjct: 203 IAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQL-LAFSRRQSLA 261 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHA 128 SVD ++ +G + ++++ ++ D VQV W E E ++LNL + A Sbjct: 262 PESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVD--PGELELVILNLAVNARD 319 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186 ++P GG + I +++ +E + L+ G+ R I DG + + + ++ Sbjct: 320 AMPDGGSILIEARNAPDEPVMGLR--GDFVRL----AVIDDGTGIPEDVRARVFDPFFT 372 >gi|84501102|ref|ZP_00999337.1| sensor histidine kinase [Oceanicola batsensis HTCC2597] gi|84391169|gb|EAQ03587.1| sensor histidine kinase [Oceanicola batsensis HTCC2597] Length = 430 Score = 42.6 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 23/195 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ S + HD+ +P+ + L +L++ E ++ L F R G Sbjct: 227 TLMLSGVSHDLRTPLTRLKLGLSMLEDEEREPLERD-VQEMQRMIDEFLDFAR------G 279 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + + D ++ + R V+ + G + + L NL Sbjct: 280 AAAEKVEKCDPVAMVRGIVEDAARGGAVVRLVEATGEGRILLRPGAMRRALENLI---SN 336 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTIDSHDIQ 182 ++ G + +SVQ S+ ++ +G + F ++ G ++ + + Sbjct: 337 AVRYGSRAEVSVQLSEKALRIRVEDDGPGIPPEQREDATRPFARLEPGRNQNRVSGVGLG 396 Query: 183 FYYVILLAHENKIRL 197 +A + L Sbjct: 397 LAIATDIARTHGGVL 411 >gi|193212167|ref|YP_001998120.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085644|gb|ACF10920.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 648 Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 29/196 (14%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL-------SSMSAIIR 63 M+LV L I HD + + AI + EL L ++ + IR S+ Sbjct: 271 MELVGQLAGGIAHDFNNALAAIIGNTELVLKKLDPAHPTVSNIRDIHTLATRSADLTRQL 330 Query: 64 LKFMR--LAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRE 114 L F R +A + L + D +Q+ W + + + Sbjct: 331 LAFARKQVAM------PQVFNLTEAISESLHLHQRLLDDNIQLEWHLCEEPIQVKFDPTQ 384 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DG 170 +IL NL + A ++ G++T+ + + G P + ++ Sbjct: 385 LEQILSNLLINARDAIEGSGRITVKCGGVRFDPDDG--KTGTPGLSPGHYAKLSVTDNGS 442 Query: 171 NVESTIDSHDIQFYYV 186 +E+T+ H + ++ Sbjct: 443 GIEATVLPHIYEPFFT 458 >gi|108759200|ref|YP_633189.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108463080|gb|ABF88265.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 515 Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 71/177 (40%), Gaps = 32/177 (18%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQLIRLSS 57 + + L A+ + ++I H++ +P+ +I ++ELL + EV LI Sbjct: 287 MRAEQLAAVGRISAQIVHEVRNPLSSIGLNVELLQDGFETARFATPEDAAEVKDLISA-V 345 Query: 58 MSAIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSW 104 + RL +++R+A + D+ V++ + V + Sbjct: 346 TQEVDRLADVTEQYLRMA----RPPRPDLDPRDVTAVLDTVLDFTREELERAGVEVVRDF 401 Query: 105 TGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + + + ++ LNL + ++P GG++TI + +++ +++ G Sbjct: 402 ALDTPHVLADEGQLRQVFLNLLRNSREAMPSGGRLTIVTRPAEDAVEVTVRDTGQGM 458 >gi|119944999|ref|YP_942679.1| sensor histidine kinase PAS domain-containing protein [Psychromonas ingrahamii 37] gi|119863603|gb|ABM03080.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas ingrahamii 37] Length = 506 Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 46/236 (19%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAI-- 61 S L AL + I H+I +P+ ++ + L E G E + I++S A Sbjct: 284 QSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFLMEEGLPLEFRTECAEKIQVSLEKASCI 343 Query: 62 --IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSR 113 L+F R S + + D++ V+ + I A ++++ + S Sbjct: 344 IENLLRFSR------PSSEQNMVPVDLDTVLCETIMLIANQAKVYKIEIVYQPIGKCGSV 397 Query: 114 ERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++ +N F+ A ++P GGK++I ++ +E ++ G T I+ Sbjct: 398 SGIFTLLQQVFMNFFLNAINAMPHGGKLSIILEQQNDEARICIRDTG---------TGIL 448 Query: 169 DGNVESTIDS-HDIQFY---------YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +G +++ D H + +++ + + + + LL Sbjct: 449 EGALDNIFDPFHTSSPAGKGVGLGLSLCYSIVKQHRGSISVDSMLGKGSTFTVLLP 504 >gi|220917160|ref|YP_002492464.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955014|gb|ACL65398.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-1] Length = 747 Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 78/191 (40%), Gaps = 22/191 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----K 65 L AL + + + H+I +P+ AI +++ LD + ++ + + RL + Sbjct: 477 RLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVN-RLNGVVTQ 535 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQV---SWTGEKIDLSRER 115 F+ + + + + +V+E R+++ W + + Sbjct: 536 FLDY----SRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQL 591 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ LNL + A ++PRGG++T+S + +++E F + +F G + Sbjct: 592 KQVFLNLALNAFQAMPRGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGIPDDA 651 Query: 176 IDSHDIQFYYV 186 +S + FY Sbjct: 652 RESIFVPFYTT 662 >gi|322418879|ref|YP_004198102.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125266|gb|ADW12826.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 656 Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ +NL + A A++ RGG++ +S + + + NG PE +I + + Sbjct: 552 QVAINLILNAGAAMQRGGELVVSTEPGGEQWVSLKFRDNGAGIS-PEHMERIFEPFFTTK 610 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ ++ E + L Sbjct: 611 VKGTGLGLAITRQIVEQHHGKICIESGIGAGTTVEVRLP 649 >gi|168705546|ref|ZP_02737823.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 559 Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 11/138 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 I HD + + + +LEL+ + +L+ + +A + + G+ Sbjct: 203 IAHDFNNLLTVVLGNLELIRCGAATGADAEELLASTERAAKQAAELTKQMLGFARRQPLR 262 Query: 81 IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRER-----AKILLNLFMVAHASL 130 D+ Q++ D + +D R+ V + ++L+NL + A ++ Sbjct: 263 TASVDLNQLVRDSLVLLRRTIDARIVVRFEPAPHLRPVAADPVQLQQVLMNLCLNARDAM 322 Query: 131 PRGGKVTISVQDSKNENI 148 P GG +T+ D+ + Sbjct: 323 PEGGTLTVETADADPPDG 340 >gi|138895124|ref|YP_001125577.1| sporulation kinase B [Geobacillus thermodenitrificans NG80-2] gi|196248295|ref|ZP_03146996.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134266637|gb|ABO66832.1| Sporulation kinase B [Geobacillus thermodenitrificans NG80-2] gi|196212020|gb|EDY06778.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 430 Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 67/163 (41%), Gaps = 18/163 (11%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIR---LSSMSAII 62 + M++V+ L + I H+I +P+ + ++LL E + + IR A Sbjct: 199 MKMEKMEIVSQLAASISHEIRNPLTVVKGFIQLLQTEPLPRETKERYIRIALEEVERAEG 258 Query: 63 RLK----FMRLAFGYTGSVDSLIGLG-DIEQVIE--DFIAVDKRVQVSWTGEKIDLSRE- 114 + F + I + ++ +V++ +A V +S + E + Sbjct: 259 IIHDYLTFAK----PAPKETEPIDVAVELRKVLQMIAPMAHMHSVDLSSSLEHGIVIGNV 314 Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + LNL + ++P GG + ++V++ + + ++ NG Sbjct: 315 QYFQQCFLNLLKNSIEAMPNGGTLRVTVENQETSVVITVSDNG 357 >gi|149918140|ref|ZP_01906633.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149821145|gb|EDM80551.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 394 Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 59/156 (37%), Gaps = 14/156 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIRLKFM----RLAFGYTG 75 I HD+ P+ I ++ LL++ G ++ V+ +R S A ++ + R++ G Sbjct: 169 ISHDLRGPLNNIGLAMNLLEDGGAAHQERVLSTVRRSITRAERLIRDLADIGRMSAGALR 228 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLNLFMVAHASL 130 + + + R + +++ + ++L L + +L Sbjct: 229 VEPRPVSPASLIESAVGDAQPSIRARAVRVDVELEPGLPKVWADGPRVLQVLDNLLRNAL 288 Query: 131 ---PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 P G++ + + + + F ++ G E+ Sbjct: 289 KFGPHAGRIILQARRAGDHVEFLVRDEGPGVAADER 324 >gi|86158207|ref|YP_464992.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774718|gb|ABC81555.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 621 Score = 42.2 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 70/221 (31%), Gaps = 37/221 (16%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGY 73 + HD+ +P+ AI LL + D + IR ++ A ++ R G Sbjct: 399 VSHDLRNPLNAILLGTSSLLAREDLSDRNVASIARIRSAAERATRLIRDLLDLTRARLG- 457 Query: 74 TGSVDSLIGLGDIEQVIED--------------FIAVDKRVQVSWTGEKIDLSRERAKIL 119 G + ++ QV + + Q W ++I A+++ Sbjct: 458 -GGIPIQPRPTELRQVAQQVVDELEPSYPDRPILVEASGNTQGHWDPDRI------AQVI 510 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176 NL A RG VT+ V E + S+ G P + + G Sbjct: 511 GNLVTNALKYGARGTPVTVGVAAEDGEVLLSVHNLG--VPIPAEIIPTLFEPGGRAAPDP 568 Query: 177 DSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + R+ ++ + L + Sbjct: 569 TGRSVGLGLFIVERIADAHGGRVEVRSGEEDGTTFTVRLPR 609 >gi|149917430|ref|ZP_01905928.1| osmosensitive K+ channel signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149821767|gb|EDM81163.1| osmosensitive K+ channel signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 357 Score = 42.2 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 19/208 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRL-------SSMSAIIRLK 65 +LL S + HD+ +P+GAI ++ L+E G + QL+ + L+ Sbjct: 129 SLLAS-VSHDLRTPLGAILGAVTTLEEGGERIDPETQSQLLAAIHDQAELLARQLRNLLE 187 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLNL 122 R G L + + V+ + D++V V E + + + L L Sbjct: 188 MTRFEGGGLELQRELAAVEEPIGVVLGALQHRLGDRQVDVQNPVEPLYARFDPVAVELVL 247 Query: 123 FMVAHASLPRG-GKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + +L G G + I V+ + + F + V G+ ST Sbjct: 248 SNLLENALRHGEGTIEIRVEAGGDREVEIRVLDRGPGLPPGGPERLFEKFVRGSKASTGG 307 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 + V LL E+ R+ D Sbjct: 308 GVGLGLAIVALLVRESGGRVWARTRSDG 335 >gi|288960772|ref|YP_003451112.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288913080|dbj|BAI74568.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 593 Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIR---LSSMSAIIRLK----FMRLAFGY 73 I H+I +P+G I S ++L E LI ++ + R Sbjct: 380 IAHEIRNPLGIIKTSSQVLRMKSQPPEASDRLIGFVLDEVGRMEALVQELLDYAR----P 435 Query: 74 TGSVDSLIGLG-DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMV 125 ++ ++ LG ++ V+E A R +V E D + LLN+ + Sbjct: 436 KAAMRQVVDLGAELRNVLEFIAAEMFRRRVLPKVELPDGPLPVQGDPSQLHQALLNILLN 495 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A ++P GG ++++ +E S+ G Sbjct: 496 AMEAMPDGGALSVTALREGDEVAVSIADTG 525 >gi|297568937|ref|YP_003690281.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296924852|gb|ADH85662.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 576 Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 79/215 (36%), Gaps = 23/215 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLK----FMRL 69 + + + H+ +P+ AI S +LL + +++++ +I +K F R Sbjct: 364 MAAGVAHEFRNPLAAISGSTQLLAQRLQKQPGQEKLLAIITRECDRLEAAIKNFLLFCR- 422 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKID---LSRERAK-ILLN 121 + L ++ + I +R ++ RE+ + +LLN Sbjct: 423 ---PATPRKQWVNLYELWEECIGLIRQTPDCTERHRLVGKMPPDLEVWADREQLRQVLLN 479 Query: 122 LFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDS 178 L A ++P GG+++ + + S+NE+ +++ PE +I + + + Sbjct: 480 LVSNACQAMPEGGELSCTAENFQSENESGVRIRLQDQGKGISPEDRERIFNPYFTTRQEG 539 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + V + + R+ + L Sbjct: 540 TGLGLAIVHQIIAGHGGRIRVASSLGQGTTFTVEL 574 >gi|327481616|gb|AEA84926.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 528 Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 23/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----Y 73 I HD + + I L++LD + + +M +R ++ + + LAF Sbjct: 170 IAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQL-LAFSRRQSLA 228 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHA 128 SVD ++ +G + ++++ ++ D VQV W E E ++LNL + A Sbjct: 229 PESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVD--PGELELVILNLAVNARD 286 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186 ++P GG + I +++ +E + L+ G+ R I DG + + + ++ Sbjct: 287 AMPDGGSILIEARNAPDEPVMGLR--GDFVRL----AVIDDGTGIPEDVRARVFDPFFT 339 >gi|120601284|ref|YP_965684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] gi|120561513|gb|ABM27257.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio vulgaris DP4] Length = 553 Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 28/236 (11%) Query: 1 MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHN-SLELLDEVGIEDEV---MQ 51 + L S L A+ L + I H+I +P+ AI + LL +++ +Q Sbjct: 253 ITNRTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSLLRLPTLDETARGKVQ 312 Query: 52 LIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSW 104 +I S L+ F R T S L + + + +A +R+ Sbjct: 313 VILEESRRLDNILRSILNFAR----PTTSKAGKADLNGVVRQTLELMAFGFDTRRITSEL 368 Query: 105 TGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 DL R R + L+NL A ++P GG +T+ + + +++ +G Sbjct: 369 ALA-ADLPRVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGEGI 427 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + I + + ++ ++ L Sbjct: 428 -PAEMHERIFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482 >gi|182416233|ref|YP_001821299.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177843447|gb|ACB77699.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 622 Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 14/152 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAF---G 72 L S I HD+ + + + + ++L E++ L+ SA ++ R +AF G Sbjct: 250 LASGIAHDLSNVLVPVVFATDILRRAPREEQEQALLDTIHSSAGRAIQIARQIIAFVRGG 309 Query: 73 YTGSVDSLIG--LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125 + + + L + ++ R++ W + A++L+NL + Sbjct: 310 ESRRTELQLRDVLHETAEMARVVFPKSIRIREDLPEDLWPVRADAA--QMAQVLMNLAVN 367 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 A ++P GG++ + + ++ I+G Sbjct: 368 ARDAMPDGGELQFAAGNLAECDLARNGISGAR 399 >gi|283853644|ref|ZP_06370878.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283570977|gb|EFC19003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 490 Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 23/223 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLS-SMSAIIR 63 S L A+ L I H+I +P+ AI N+L ++G+ I LS S Sbjct: 263 KSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGLASREKASIILSESKRLDAI 322 Query: 64 LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117 LK F R T SV + + D+ + Q + A+ Sbjct: 323 LKDIINFAR----PTSSVPGEVNVNDVAARTTALMRHGLEAQHITLTLALSPDTPMARGD 378 Query: 118 ------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 LLN + ++P GG++T++ + S+ +G P+ Q+ + Sbjct: 379 PETLTQCLLNCLKNSMEAMPGGGRITVATGLRQGRVFLSVADDGPGI-APDILPQVFNPF 437 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E H ++ L Sbjct: 438 FTTRDKRAGLGLAMTKKILEDLGGAVDLESPPGHGATVTLFLP 480 >gi|258543850|ref|ZP_05704084.1| sensor histidine kinase [Cardiobacterium hominis ATCC 15826] gi|258520890|gb|EEV89749.1| sensor histidine kinase [Cardiobacterium hominis ATCC 15826] Length = 500 Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 24/189 (12%) Query: 1 MAKNICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLEL-LDEVGIEDEVM-QL 52 +A ++ L ++ AL+ S+ I HD+ SP+ + N +E+ L + E + ++ Sbjct: 252 LADDLNHMLDRIE--ALITSQRQVTNNIAHDLRSPLNRMRNRMEVALLDRNSEAAALREV 309 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--LGDIEQV-------IEDFIAVDKRVQVS 103 I S A LK + + D + + Sbjct: 310 IADSVEDAENLLKTFNALLNIAQVESRAKDDFKHESLSAICDDLAELYDVMTEEGEHSFE 369 Query: 104 WTGEKI-DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 E+ D+ R A+ + NL A P GG +T++ + S+ NG+ Sbjct: 370 AHIERGLDIMGNRQLIAQAITNLLDNAVKYTPSGGHITLTAEQRGENIHVSVGDNGHGI- 428 Query: 160 FPEKFTQIV 168 P+K ++ Sbjct: 429 PPDKRDDVL 437 >gi|108805767|ref|YP_645704.1| multi-sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108767010|gb|ABG05892.1| multi-sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 608 Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 68/206 (33%), Gaps = 16/206 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75 H++ +PI A+ LE+L++ E+ + +R + RL+ RL Sbjct: 385 HELKTPISALSGYLEMLEDEQDEEVRAEFLRE-MRTQTERLQNLARTLLDLSRLDANAVI 443 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSRERAKILLNLFMVAHASL---P 131 + L D+ + + R ++ + + ++ L ++ ++ P Sbjct: 444 FRLEEVDLEDLLHELRRDFSYTGRPLRIHAEEGVPPVETDPTQLHRTLAILVDNAIKYSP 503 Query: 132 RGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 G V ++++ + ++ G + A P F + S D + Sbjct: 504 EGTPVDLTLRREDGGVVIDVRDRGCGISEAEIPHIFERFYRAQGSSRADGTGLGLALANE 563 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + + + S +L Sbjct: 564 IVGHLGGEIRVQSEPGAGSTFSVVLP 589 >gi|76803264|ref|YP_331359.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM 2160] gi|76559129|emb|CAI50728.1| signal-transducing histidine kinase; probable GAF, PAS/PAC domain protein [Natronomonas pharaonis DSM 2160] Length = 508 Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 10/145 (6%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYT 74 S HD+ +P+ A LEL E +DE + ++ S A R L+F R G T Sbjct: 312 ASHASHDLRNPLSAAAGRLELAIEQHGDDEDLLAVKRSLEDADARIDEMLEFARA--GNT 369 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAHASLPRG 133 + + L + + + + ++ R+R + L NLF ++ Sbjct: 370 VTDPKPVSLSEAAAAAWETLDTEGATLAVDDEVRLRGDRDRIERLFENLF---RNAVEHA 426 Query: 134 GKVTISVQDSKNENIFSLKINGNLA 158 G+ + F + +G Sbjct: 427 GEDATVRLGALPTPGFYVADDGPGI 451 >gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 467 Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 18/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--IRLSSMSAIIRL-KFMRLAFGYT 74 L + + H++ +P+ I LEL+ + E L I+ M + +L+ Sbjct: 230 LVADVAHELRTPLTIIQGQLELIQQGVKRAEPETLLPIQDEVMRLTRLVGDLHQLSLAEA 289 Query: 75 GSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL----SRERAKILLNLFM 124 G + D+ + + A K + +S ++++NL Sbjct: 290 GRLPLEKTWTDLTALAGRIVDNFQIEAEAKEITLSLEASDSIPVYVDPHRMTQVIVNLVG 349 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI--VDGNVESTIDSH 179 A P GG + I V+ +E I ++ G R P F + D Sbjct: 350 NALRYTPTGGTIRIVVRQEGSEAILAVSDTGPGIRPEHLPHIFDRFFRSDEARSREEGGT 409 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + R+ E + L K Sbjct: 410 GLGLAIAKEFVEAHGGRIGAESRPGEGTTFTVRLPK 445 >gi|253573995|ref|ZP_04851337.1| lantibiotic biosynthesis sensor histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846472|gb|EES74478.1| lantibiotic biosynthesis sensor histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 464 Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 19/198 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFM---RLAFGY 73 S + HD+ +P+ + ++ELL E DE + I S+ +K + Sbjct: 247 SALAHDVKTPLTIVRGNVELLSETEQSDEQREYTEYIAQSARQMEAYIKTLIEITNTETA 306 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRERA--KILLNLFM 124 + L + +E + V+ + + L+N+ Sbjct: 307 ASYQPVNLDLKEFIHTLEAQMQALAAVKELSVAVHFVGELPDELYADPVLLERALMNVIA 366 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSH-D 180 A P +T+SV+ + + F + G Q G+ D H Sbjct: 367 NAMDHTPAKSTITLSVEAAGDRIQFRVTDEGPGFSPEALKYATEQFYMGDPSRRSDGHYG 426 Query: 181 IQFYYVILLAHENKIRLL 198 + Y +A + L Sbjct: 427 MGLYITQFVAQLHGGELH 444 >gi|220908212|ref|YP_002483523.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864823|gb|ACL45162.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 682 Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 26/190 (13%) Query: 9 LSSMDLVAL--LCSRICHDI---ISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSA 60 + + L +L L S I HD+ ++PI + L L + ++ QL+ S+ Sbjct: 307 MRAQRLESLGTLASGIAHDLNNILTPILGVAQ-LLPLKFPHMNEQTRQLLDTLETSARRG 365 Query: 61 IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDL 111 +K F R G S+ L +I Q+I + + ++ W E Sbjct: 366 SALIKQILSFARGIEGKHLSLQLSHLLQEIRQIIIQTLPKSIDIHLNLQPQLWMVEGDVT 425 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQI 167 + +NL + A ++P+GG + I + D + F G R T Sbjct: 426 QLHQV--FMNLCVNARDAMPQGGSLEIQAENLELDEAAAHTFLEARPGRYVRV--TITDT 481 Query: 168 VDGNVESTID 177 G + Sbjct: 482 GKGIPPENLS 491 >gi|115377380|ref|ZP_01464585.1| sensory box histidine kinase/response regulator, putative [Stigmatella aurantiaca DW4/3-1] gi|115365591|gb|EAU64621.1| sensory box histidine kinase/response regulator, putative [Stigmatella aurantiaca DW4/3-1] Length = 1222 Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-EVGIEDEV-------MQLIRLSSMSAIIRLKFMRL 69 + S I HD+ + + A+ LE+L + MQ++ + +F R Sbjct: 864 MSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLMQIVSDAGTRVRHLQEFSRQ 923 Query: 70 AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAKIL------ 119 F + L G+ + ++ D I R V++ E L + Sbjct: 924 RFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIENEVPVLPAVNGEAADLRYVF 983 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 LNL + A ++P GG V + ++ + +++ G Sbjct: 984 LNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQDHL 1027 >gi|168701908|ref|ZP_02734185.1| signal transduction histidine kinase, nitrogen specific, NtrB [Gemmata obscuriglobus UQM 2246] Length = 418 Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 23/168 (13%) Query: 18 LCSRICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAI----IRLKFMRL 69 L + I H++ +P+G + +E LL + +D ++++ L+F R Sbjct: 189 LAASIAHELNNPLGTVSLRIEGLLAKTPADDPRRRPLEVVEGEVERMAGLVANLLQFSR- 247 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAK-ILLN 121 S + + + D +A R Q + I R+ + + LN Sbjct: 248 ---AGRDQVSTVDVCEEVSRTVDLVAHHLRKHGVLVEPQFAPGVPHIHADRQHLRQVFLN 304 Query: 122 LFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARFPEKFTQ 166 LF A ++PRGG++ V+ ++I P + Sbjct: 305 LFTNAADAMPRGGRLVPRVRAGALPDGRPAVVIEIADTGVGIPAELRD 352 >gi|145300859|ref|YP_001143700.1| two-component system sensor histidine kinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853631|gb|ABO91952.1| two-component system sensor histidine kinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 461 Score = 42.2 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI ++ E L E ++ + Q ++ L F R Sbjct: 265 ISHDLRTPITSLRLRTEFLAEGEDKERIQQTLQQMEQMLAATLSFAR-------EEGQQE 317 Query: 82 GLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRG 133 + +E + +D+ + V G+++ R ++L NL ++ Sbjct: 318 ATRELDLVSLLESLCDDYADTGQPVTCLVEGKQVYACRANTLRRVLQNLI---GNAIKYA 374 Query: 134 GKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYY--VIL 188 G +S++ +++E + + G R + F V + I+S + Sbjct: 375 GSAEVSLERTESELLIRVCDQGPGIDPERLEDVFKPFVRLDEARNIESGSVGLGLSIART 434 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 L H++ L + + L Sbjct: 435 LVHQHGGELTLHNREQGGLEARISLP 460 >gi|291546652|emb|CBL19760.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Ruminococcus sp. SR1/5] Length = 224 Score = 42.2 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 22/153 (14%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMRLAFG 72 S+ H++ +P+ I++ L+++ + D+VM + + L AF Sbjct: 19 SKFSHELRNPLTLINSGLQMIASAHPDVKEYEHWDDVMDNL-DYVKELLDELS----AFN 73 Query: 73 YTGSVDSL-IGLGD-IEQVIE------DFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLF 123 G V I + ++ D++ + + + + L R R + +LLNL Sbjct: 74 NAGHVKRENIDTCSYLRTILSSIKPTLDYLEITLETDIPDSLPSMALDRIRVRQMLLNLL 133 Query: 124 MVAHASLPR-GGKVTISVQDSKNENIFSLKING 155 A ++P GGK++ SV + ++ NG Sbjct: 134 KNAWEAVPIPGGKISFSVIPENSGIRIDIRDNG 166 >gi|260892097|ref|YP_003238194.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ammonifex degensii KC4] gi|260864238|gb|ACX51344.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ammonifex degensii KC4] Length = 621 Score = 42.2 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 19/217 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAII----RLK 65 L AL + + H+I +P+ I +++ G + L+ L Sbjct: 393 RLAALGKFVAGVAHEIRNPLTTISGYIQMWQRYGKPTPHSLPLVAQEVRRLNAIVDKLLF 452 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDL-----SRERAKI 118 F R L + + FI A D +V+V + + ++ Sbjct: 453 FAR----PAEMKLQPYDLNQLVVQVLQFIGHAQDNKVKVEVSLSPELPTVLLDPEQMRQV 508 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL-ARFPEKFTQIVDGNVESTID 177 L+N+ ++ ++P GG +++S + + + + + PE +I D + Sbjct: 509 LMNIIYNSYQAMPNGGLLSVSTELTSDGKYAVVTVGDTGCGIPPENLPRIFDPFFTTKAR 568 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + E + L Sbjct: 569 GSGLGLALAHEIVTAHGGHIEVESKVGVGTTMRVYLP 605 >gi|119718537|ref|YP_925502.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119539198|gb|ABL83815.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 593 Score = 42.2 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 31/223 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRL------- 69 L + + H++ +P+ AI E+L E G+ D + + R+ Sbjct: 374 LVATVSHELKNPLSAILGYAEILAGEPGLSDAARACVAAIERGGG---RLARVVDDLLLL 430 Query: 70 ---AFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKIDL-----SRERAKI 118 A S + LG + +A +R+ + + + R+ + Sbjct: 431 HEPADADAMSTSQPVDLGQAVAEVVELNGPVARGRRLTLRADLPAVPVLALADPRDVDHV 490 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + NL A P GG + ++V+ +E L+ + E+ + + D Sbjct: 491 VTNLVGNALKYTPEGGTIAVTVERDGDEA--VLRCTDDGIGIAEEEQAHLFEEFFRSTDP 548 Query: 179 HDI-QF------YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Q V + + R+ + L Sbjct: 549 AAVAQPGTGLGLAIVRRVVERHGGRIEVDSALGRGSTFRVFLP 591 >gi|49475714|ref|YP_033755.1| sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238521|emb|CAF27757.1| Sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 825 Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 17/135 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEV--GIEDEVMQLI--RLSSMSAIIRLKFMRLAFG-YTGS 76 I HD + + AI S +LL + LI + ++ A ++ + LAF Sbjct: 457 IAHDFNNVLTAILMSCDLLLNTHRSFDPAYADLINIKNNANRAAALVQQL-LAFSRKQTL 515 Query: 77 VDSLIG----LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAH 127 + L DI +I + + ++++ W+ E S +R ++NL + A Sbjct: 516 QPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSVEVDQASFQRV--IMNLVINAR 573 Query: 128 ASLPRGGKVTISVQD 142 ++P GG VTI+ + Sbjct: 574 DAMPNGGIVTIATNN 588 >gi|289548272|ref|YP_003473260.1| multi-sensor signal transduction histidine kinase [Thermocrinis albus DSM 14484] gi|289181889|gb|ADC89133.1| multi-sensor signal transduction histidine kinase [Thermocrinis albus DSM 14484] Length = 639 Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 15/208 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLA 70 +++ + I H + +P+ +I S E+L ++D+ ++ L++ + + +R Sbjct: 413 LNIAGEIAVSIAHQLNNPLASILASAEVL-MSRLQDDTLKPLVQRIVDNTARASQTVRKL 471 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSW------TGEKIDLSRERAKI 118 +GS D + + E + A K V++ + + +I Sbjct: 472 LDISGSKDGSPSKVNPATLTEGVVDMMLYKARKKGVKLEYVNFLKENITLFCYPWKLEQI 531 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 L+NL A P+GG V +++++ + ++S+K +G R + +I + + ++ Sbjct: 532 LMNLVDNAIDETPQGGYVRVTLEEVRGGLVWSVKDSGKGVR-EDILDRIFEPFFTTKVEG 590 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHN 206 + + V + R+ D Sbjct: 591 YGLGLSIVKRFVEDMGGRVEVINHPDGA 618 >gi|115375617|ref|ZP_01462874.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310823166|ref|YP_003955524.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367393|gb|EAU66371.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309396238|gb|ADO73697.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 549 Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 24/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVM-QLIRLSSMSA---IIRL-------- 64 + R+ H+I +P+ I SLE LL +D L R S+ + RL Sbjct: 336 VARRLAHEIKNPLTPIQMSLETLLAAQSAQDARFPALFRESAGVVLEEVDRLRRIVDEFS 395 Query: 65 KFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKIL 119 +F RL + + L ++ + V+ + + + T + ++R ++L Sbjct: 396 RFARL----PKPQLTPVDLSELTQSVLALYATPPPGITLLPTIQTGVVARADRDQLTQVL 451 Query: 120 LNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +NL A +L +GG V + V+ ++ + I ++ G E ++I + + Sbjct: 452 VNLVKNAEEALADKGGSVRVRVKGTQTDAIVEVEDTGPGIPL-EHRSRIFEPYFTTKQGG 510 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E+ +L S +L + Sbjct: 511 TGLGLAIAARILQEHGGKLEVGGEPGEGARFSLILPR 547 >gi|224370880|ref|YP_002605044.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223693597|gb|ACN16880.1| two-component sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 557 Score = 41.8 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 74/190 (38%), Gaps = 31/190 (16%) Query: 3 KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE--------D 47 K + L D + AL + + + H+I +P+G I +LL++ D Sbjct: 313 KELNAQLIQADKMAALGKMAAGVAHEINNPLGIIAAKAGWMRDLLEDEAFRNSENFKEYD 372 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--------DKR 99 + ++ I A K G+ S++ ++ D+ QV++ + D R Sbjct: 373 QALEKIEEHVERAA---KVTHNMLGFARSMEPVMERVDVNQVLKKTLEFLDYHAGINDIR 429 Query: 100 VQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 ++ + ++ +++++ LN+ A ++ R G +T+ + + + G Sbjct: 430 IETRFDESIPEIMSDQSQLQQVFLNILNNAVDAIERQGTITVETLAKTDTLVIHITDTGR 489 Query: 157 LARFPEKFTQ 166 PE + Sbjct: 490 G--IPETLKK 497 >gi|85707060|ref|ZP_01038149.1| sensor histidine kinase [Roseovarius sp. 217] gi|85668501|gb|EAQ23373.1| sensor histidine kinase [Roseovarius sp. 217] Length = 453 Score = 41.8 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VDSLIG 82 HD+ SP+ A+ E++DE D ++ I L F R G S V + Sbjct: 266 HDLRSPLTAMRVRAEMVDEDETRDSLVASIEEMQEMVDATLAFAR---GMASSEVYETVD 322 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 LG + ++ + + + + + + L N + + GG ++ Sbjct: 323 LGAYLKQLQADMIDGFTLDTANSISVRLRPQSVRRALRN---IIENAQRYGGGAEVTFVH 379 Query: 143 SKNENIFSLKINGNLARFPEK 163 + NG E Sbjct: 380 DAEYVQIRVSDNGPGVPEAEL 400 >gi|312114267|ref|YP_004011863.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219396|gb|ADP70764.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 836 Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 73/221 (33%), Gaps = 37/221 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSA-------IIRLKFMRLAFGYTG 75 HD + + I LE+L +DE Q LI ++ A L F R Sbjct: 422 HDFNNLLMPILAGLEMLQRRYPDDERTQRLIGMALQGAERSRTLISRLLSFAR----RQN 477 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAK------ILLNLFMVAHA 128 + +GD+ + D + Q+ + + L LLNL + + Sbjct: 478 LEARPVDVGDLVNGMMDLMLRTLGPQIDIHLKIAEGLPAASVDPNQFELALLNLAVNSRD 537 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY--- 185 ++P GG++ I + +N +G R T G E+T+ H I+ +Y Sbjct: 538 AMPDGGRIIIEISLETVQNDSKDLKSGAYIRV--AVTDTGYGMDEATLQ-HAIEPFYSTK 594 Query: 186 -----VIL-------LAHENKIRLLPEIIDDHNVVLSALLE 214 L LA ++ L LL Sbjct: 595 GVGKGTGLGLSMVYGLAAQSGGMLRLASRSGEGTTAELLLP 635 >gi|108758513|ref|YP_628610.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108462393|gb|ABF87578.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 698 Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 20/214 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK----FMRLAFGY 73 + HD+ +P+GAI ++ ++ + G+ DE Q IR S+ A ++ F R G Sbjct: 465 VSHDLRNPLGAISLAVSMMLQRGLLDERQARQAQRIRSSADRATRMIRDLLDFTRARQGT 524 Query: 74 TGSV-DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 V + L ++ + + D + + + G A+++ NL A Sbjct: 525 GLPVYPQPMDLHEVVRTVLDEVHAGWPDRHLETERTGDGVGTWDPDRLAQLIGNLVGNAL 584 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV-ESTIDSHDI-- 181 P G V ++ + + + + G R P F + V I Sbjct: 585 QYSPPGTPVRVTSRGDDDGVVLEVHNLGPAIPLERQPRIFEPLERATVRPEDQGRRSIGL 644 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Y V + + + ++ + L + Sbjct: 645 GLYIVRSIVLAHGGTVEARSQEETGTTFTVRLPR 678 >gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 392 Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 35/225 (15%) Query: 20 SRICHDIISPIGA--IHNSLELLDEVGIEDEVMQL--------IRLSS-MSAIIRLKFMR 68 S I HD+ SPIG + ++ L++ + L I S+ M LK+ + Sbjct: 156 SVIAHDLRSPIGTLKMVFNMLLMNLTPEQIGEENLEMVTMGNNITESTFMLLDNLLKWTK 215 Query: 69 LAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKID---LSRERAKILL-N 121 G SV + + ++ D +A K + V + + K ++ N Sbjct: 216 SQTGRMNSVFQEVDISEVVVFASKMSDLVAQVKSISVEYDIPGPISVNCDVDMVKTIMRN 275 Query: 122 LFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD--------G 170 L ++ GG++ ISV+++ S++ G R E ++++ G Sbjct: 276 LM---SNAIKYSNEGGRIIISVRETPTHARISVRDFGTGIR-EEDIPKLLNPEIHYMTYG 331 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +Q V L N L E + + + K Sbjct: 332 TKNEEGSGLGLQ--LVQDLTRRNGSELTIESAEGEGSTFTFTIAK 374 >gi|289661809|ref|ZP_06483390.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 940 Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL D +++ + S+ A + + LAF Sbjct: 572 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLDRYVEMAQSSAARATALTQRL-LAFSRRQ 630 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + + + + D IA ++ D + + + LLNL + A Sbjct: 631 TLAPTAVDVEALVRDMHDIIARTLGPLIALQLRPADEAWQVLVDAPQLENALLNLCINAR 690 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 691 DAMPDGGELTISLHN 705 >gi|322434234|ref|YP_004216446.1| integral membrane sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321161961|gb|ADW67666.1| integral membrane sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 604 Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 19/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLI---RLSSMSAII 62 + S L + + S I HD+ I AI+ + E L E +LI + + Sbjct: 354 VDSERLATIGRMASSISHDLRHYISAIYANAEFLSLEATPQVEREELIFEVQTAVHGMTD 413 Query: 63 RLKFMRLAFGYTGSV--DSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSR 113 L + L F TG S + + + + A++ R+ + E + Sbjct: 414 LLDSL-LGFSKTGRSLLPSYESIPYLVERAAGLLRAHPEARAIELRLDELPSVEAWVDAT 472 Query: 114 ERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171 + + + NL + A + RGG V ++V+ S++E LKI N P F + Sbjct: 473 KFVRAVFNLLLNACQAARRGGLVPAVTVELSEDEKRIVLKIIDNGLGVPASFATTIFEPF 532 Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A E+ + E V + L K Sbjct: 533 VSTGRENGTGLGLTLAQHIAQEHGGMVRLEESAPGRTVFTLSLYK 577 >gi|110634254|ref|YP_674462.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110285238|gb|ABG63297.1| PAS/PAC sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 651 Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 47/227 (20%) Query: 24 HDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74 HD + + I +SL+LL ++ + L+ + +A L F R Sbjct: 291 HDFNNLLMVILSSLDLLRRKLPDNDERIRSLVDNAVQAAQRGASLTQRMLSFAR----RQ 346 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKI------LLNLFMVAH 127 + + L ++ I D + + L + LLNL + A Sbjct: 347 ELKRTAVDLPELVHGISDLLQRTLGPLIRIETRFPPTLPKVHTDANQFESALLNLAINAR 406 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQ 182 ++P GG + IS ++ G AR + ++ + Sbjct: 407 DAMPSGGPLIISAREETISG-------GPGARLAPGRYVCLSVEDRGEGMDEETLARATD 459 Query: 183 FYYVIL---------------LAHENKIRLLPEIIDDHNVVLSALLE 214 ++ LA ++ RL + + L Sbjct: 460 PFFTTKGIGKGTGLGLSMVQGLAEQSGGRLSLKSVKGEGTTAEMWLP 506 >gi|332715677|ref|YP_004443143.1| putative two-component sensor histidine kinase protein [Agrobacterium sp. H13-3] gi|325062362|gb|ADY66052.1| probable two-component sensor histidine kinase protein [Agrobacterium sp. H13-3] Length = 438 Score = 41.8 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 8/148 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + ++ D+ +++++ +R + + R A G G S I Sbjct: 241 ISHDLQTPITRMRLRADMADDTPEKEKLVSDLREIERLVQDGIAYARSAHGN-GEKSSRI 299 Query: 82 GLG-DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 L I+ + D+ K V V ++ A +IL NL +L GG I Sbjct: 300 DLASFIDSIAYDYQDTGKAVTVDGMVRGTVSTKPHALRRILTNLI---DNALKFGGSAEI 356 Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQ 166 V D + E + + P++ Q Sbjct: 357 KV-DRRTEGTVVITVLDRGPGIPDEMLQ 383 >gi|303246319|ref|ZP_07332599.1| histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492382|gb|EFL52254.1| histidine kinase [Desulfovibrio fructosovorans JJ] Length = 822 Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 17/212 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L + + H+I +P+G I ELL + + + + + + AI+ K +R + Sbjct: 602 LAAGLAHEINNPLGVIACYAELLRQNETDPQALDDLAVIERHAIMAKKVLRDLLDFARPR 661 Query: 78 DSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEK-IDLSRERA----KILLNLFMVA 126 + G DI +++ A ++V++ T + + ++R A ++L NL + A Sbjct: 662 QASTGPCDIAALLKSLSRLFEVQAQARKVRLETTIDDNLPVARADASALEQVLSNLLLNA 721 Query: 127 HASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQFY 184 ++ P G+V I+ + +++ S+ ++ N P T+I D + Sbjct: 722 LDAVSPETGEVRIAARPGPDDDSVSILVSDNGPGIPPQDLTRIFDPFFTTKEAGRGSGLG 781 Query: 185 YVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 ++ L + R+ E D V + +L Sbjct: 782 LAVVFGLLRDMGGRVEVENADGA--VFTVILP 811 >gi|254476571|ref|ZP_05089957.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. R11] gi|214030814|gb|EEB71649.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. R11] Length = 439 Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 25/203 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYT 74 L+ S + HD+ +P+ + L +L++ E +R L F+ + G + Sbjct: 236 TLMLSGVSHDLRTPLTRMKLGLSMLEDEEAEP-----LRQDVDEMQALLDAFLDFSRGVS 290 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA--KILLNLFMVAHASL 130 S + + V D + + +GE + R+ A + + NL ++ Sbjct: 291 TSEPEAVDPHVLVTVAVDGWRRQGKDVMLGEMSGEGEVMLRKAALRRAIENLI---SNAV 347 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-------- 182 G + +SV ++ ++ +G ++ + + +D Q Sbjct: 348 RYGSRARVSVALTERFLRIRVEDDGPGIPEADRAEAM---RPFTRLDPARNQDLGSGVGL 404 Query: 183 -FYYVILLAHENKIRLLPEIIDD 204 V +A + L +D Sbjct: 405 GLAIVTDIARAHGGMLRLGKSED 427 >gi|323138439|ref|ZP_08073508.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322396235|gb|EFX98767.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 742 Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 27/171 (15%) Query: 22 ICHDIISPIGAIHNSLELLD----EVGIEDE----VMQLIRLSSMSAI----IRLKFMRL 69 + H++ +P+GAI NS+ LL+ E +E + I+ L+ R+ Sbjct: 521 LAHELRNPLGAISNSVNLLNILTSETSSAEEKKRASLARIKRQVNHLKRIVDDLLEITRI 580 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI------ 118 G + LG+I D ++ + +++ + ++ Sbjct: 581 KHGKIELKKERVELGEILSQAVDLCQPLVQEKGHQLTIELPSRPLEVDGDPVRLVQIFGN 640 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 LLN + + GG++ I+ + E I ++ G PE I D Sbjct: 641 LLNNAVKFTDA---GGRIDIAAAHGEKEAIVRVRDTGAGL-PPETLGSIFD 687 >gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 691 Score = 41.8 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 28/226 (12%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM----SAIIRLK 65 L + L S I H+I +P+ + E+L+E E LIR S + L Sbjct: 448 ARLKSTLLSNISHEIRTPLAGVIGFAEVLEEELDEPHRELAALIRDSGRRLLETLNTLLD 507 Query: 66 FMRLAFGYTGSVDSLIGLG-DIEQVIE--DFIAVDKRVQVSWTGEKIDLS---------R 113 R+ G ++ Q + + DK +++ L R Sbjct: 508 LARIEAGAFVLTPEPFDAADEVRQSVRIFQRMIDDKGLRLELDLPDAPLPVYLDRNGFHR 567 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV-- 168 ++ N G + + + + ++ G + A P F + Sbjct: 568 IVVNLVSNAVKFTDE-----GMIRVGLAAEGDWLRLQVQDTGVGIDPAFMPHLFEEFRQE 622 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + T + L R+ + + L Sbjct: 623 NNGLARTHPGSGLGLAITHRLVEMMGGRIEVQSEKGKGTTFTVWLP 668 >gi|316933147|ref|YP_004108129.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315600861|gb|ADU43396.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 445 Score = 41.8 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 10/146 (6%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + E +++ + + + L F+R G T +LI Sbjct: 240 ISHDLRTPITRMRLRAEFIEDEHQRTQTLHDLDQMGAMLTAVLTFLRD--GATRDAPTLI 297 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVT 137 L Q+I D +V++ G + + + + + NL ++ G +VT Sbjct: 298 DLASAMQLIADQFTDIG-AKVAYQGPEHAMAMARPGDLHRAVTNLV---ENAVRFGTEVT 353 Query: 138 ISVQDSKNENIFSLKINGNLARFPEK 163 I + +++ ++ +G +K Sbjct: 354 IRLALTQDTITIEVEDDGPGIADADK 379 >gi|86157319|ref|YP_464104.1| osmosensitive K+ channel signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773830|gb|ABC80667.1| osmosensitive K+ channel signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 902 Score = 41.8 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 17/230 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59 A+ + +L + L S + HD+ +P+ AI + LL + + D + +L+ Sbjct: 654 ARRSALRARTEELRSGLLSAVSHDLRTPLAAITGASTLLLDAAVADPAVRRELVATVVEE 713 Query: 60 A-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 A L RL G + L ++ + + + + DL Sbjct: 714 AERLERLVSDLLDMTRLDSGVVEPRREWVPLVEVVGAAMNRVERALGNRPVAIALRDDLP 773 Query: 113 RERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKF 164 ++L+NL A P G +++++ + + G E+ Sbjct: 774 LLSIDPILIEQLLVNLLENATKYTPPGTEISVAAVREGGTLVIEVADRGPGIPAGEEERI 833 Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +A + RL V L Sbjct: 834 FERFHRAARPGVRGVGLGLPIARAIAQAHGGRLTAASRPGGGSVFRLTLP 883 >gi|237798889|ref|ZP_04587350.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021743|gb|EGI01800.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 397 Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ ELL ++D+ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINAGAELLLRRPLDDKTLQVVQHILTSGQRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131 S+ +++ +E I+ +RV + ++L R + +I L + ++ Sbjct: 242 PLSIHDAHGLDKTLEHVISEVQRVHPDRLIRSNIGALELIRCDHERIAQLLSNLVSNAIS 301 Query: 132 RG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185 G + ++ V ++F L + PE + I + Y Sbjct: 302 HGDAQSSVEVNAGVRGDLFVLSVANQGEPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIARAHGGVLEVCSTHEGGTVFTFSMP 390 >gi|148265415|ref|YP_001232121.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398915|gb|ABQ27548.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 662 Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 79/229 (34%), Gaps = 31/229 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSS----M 58 + + L A+ L + + H+I +P+ I + ELL + E + I Sbjct: 438 VRAEKLAAIGELAAGVAHEINNPMAIIRGNTELLQMSIPPEADNREEVDTIFQQMGRVER 497 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEK 108 LKF R +G I +++ + ++ R + + + Sbjct: 498 IVANLLKFAR-------QEQKNLGTVFINRLLREILSQVGHQVPLSGINIREEYAPDIPE 550 Query: 109 IDLSRERAKILL-NLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFT 165 I+ ++ + + NL + A ++P GG +TI + + ++ GN E Sbjct: 551 IEGDSDQVRQVFINLVINAVQAMPGGGDLTITTGIDSEAGKCEITVTDTGNGIAL-ENLE 609 Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 QI + + + + ++ R+ + + +L Sbjct: 610 QIFNPFFTTKAGGTGLGLSVSYGIIRDHGGRIEVRSEPEKGSMFRVVLP 658 >gi|310825294|ref|YP_003957652.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398366|gb|ADO75825.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 873 Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 35/227 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNS--------------LELLDEVGIEDEVMQLIRLS 56 L AL L + + H++ +P+GAI NS L L+D VG E + + I Sbjct: 643 RLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVGEEADRLNRIVD- 701 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLS--- 112 L F R + S + +E V+ +A ++V W E Sbjct: 702 -----DLLNFARP---PSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPPVLA 753 Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQI 167 R + LNL + + ++ +GG + + + ++E G+ + +I Sbjct: 754 DERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVRARI 812 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + E LL Sbjct: 813 FEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 859 >gi|117618476|ref|YP_858674.1| sensory histidine kinase CreC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559883|gb|ABK36831.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 473 Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 16/207 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIR-LKFMRLAFGYTGS 76 H++ SP+ AI + E+L E + + L I R L+ RL G Sbjct: 265 HELKSPLAAIRGAGEILAETPPPEVARRFIGNINLETARMQQLIERMLQLARLESGQGLD 324 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL------NLFMVAHASL 130 S+ ++ ++ + +R QV E +++ LL NL A Sbjct: 325 RQSVEPAKLGKRTLDARQIIAQRRQVELVAELASAPKQKWDPLLVEQAIGNLLDNAIDFS 384 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187 P G+VT+S K F + G P F + S + + Sbjct: 385 PANGQVTLSGSLQKEGYCFRVTDGGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFAH 444 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 +AH++ RL + + L Sbjct: 445 EVAHQHGGRLTLANRPEGGALAELWLP 471 >gi|218187433|gb|EEC69860.1| hypothetical protein OsI_00217 [Oryza sativa Indica Group] Length = 750 Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 45/222 (20%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS------------AIIRLK------ 65 H++ SP+ AI + E+L E + I + A RL+ Sbjct: 541 HELKSPMAAIRGAAEILAEQPPPQVAARFIDNILVQNARMQSLVEKLLAQARLENRVEIT 600 Query: 66 ---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 F RLA + + + V + G+ L Sbjct: 601 PEVIRVNSLFTRLA-----------DARSALLSAKAIVLTIQPVPFNVEGDPDLLE---- 645 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVE 173 + L NL A P+GG + ++ ++ + + + +G+ F + E Sbjct: 646 QALGNLLDNAIDFTPQGGTIELAAREEQGQIQLVVIDSGSGIPDYALDRIFERFYSLPRE 705 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + S + +V +A ++ + D+ V+ + L + Sbjct: 706 NGLKSSGLGLAFVQEVARLHQGEITLRNRDEGGVMATLTLHR 747 >gi|126462925|ref|YP_001044039.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126104589|gb|ABN77267.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 941 Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 19/199 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L S + HD+ + + AI S L+ + G + Q I ++ A ++ L G Sbjct: 541 LASGLAHDLNNLLAAIGGSALLIQDLQSGAAEVHAQRILAATEQAGALVRRF-LTLGKRQ 599 Query: 76 SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128 S S I L + +++ + R+ ++ I + + +++LNL + A Sbjct: 600 SNRSRIDLCPLLQEAADLVQAGLRNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARD 659 Query: 129 SL----PR--GGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 ++ PR G ++T+++ + + G R+ +E + + Sbjct: 660 AISTAPPREGGHEITVALAPAGPAQLAQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQAR 719 Query: 180 DIQFYYVILLAHENKIRLL 198 Q Y+ A + L Sbjct: 720 VFQPYFSTKGAAGTGLGLA 738 >gi|223940722|ref|ZP_03632560.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223890613|gb|EEF57136.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1463 Score = 41.8 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 16/132 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD+ + + I S ELL+ + E+ ++I S + R L F R G Sbjct: 1103 IAHDLNNVLAPILMSCELLEHELRDAEIREVIS-SIKTGAQRGADLVRQVLSFARGVEGR 1161 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHA 128 ++ + +IEQ++ + +V VS W + ++LLNL + A Sbjct: 1162 RLALQPRHLIREIEQIMGETFPKSIQVDVSPDPELWMVVGD--PTQLHQVLLNLCVNARD 1219 Query: 129 SLPRGGKVTISV 140 ++P GG++T+S Sbjct: 1220 AMPAGGQLTLSA 1231 >gi|291288804|ref|YP_003505620.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885964|gb|ADD69664.1| integral membrane sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 623 Score = 41.8 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMR 68 +CHD+++PI + +E ++ ++ E +LI S AI ++ +R Sbjct: 400 LCHDLLNPISCVIGMMEYYNDPNEMAEVMDAEGKELIVESLEQAINIIQMVR 451 >gi|94992604|ref|YP_600703.1| two-component system histidine kinase [Streptococcus pyogenes MGAS2096] gi|94546112|gb|ABF36159.1| two-component system histidine kinase [Streptococcus pyogenes MGAS2096] Length = 343 Score = 41.8 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAI----IRLKFMRL 69 L S I H I +P+ A + +LL + G+ DE + +++S +K RL Sbjct: 125 LISDISHQIKTPVAAANTFAQLLGDTGLSDEERSEYIATLQMSLEKLTFLTNSLIKMSRL 184 Query: 70 AFGYTGSVDSLIGLGDI-EQVIEDFI--AVDKRVQVS---WTGEKIDLSRE-RAKILLNL 122 G L DI Q ++ A DK + ++ + L A+ + N+ Sbjct: 185 ESGIIRLKPEQSSLNDIVMQAVKTVYAKARDKNITITFDCGQTFEALLDFNWTAEAVTNV 244 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179 A P GG V + + + + + NG E F + G + +D Sbjct: 245 LDNAVKYTPSGGVVDLKITEYPSYLRLDVSDNGIGIPEEEQAKIFGRFYRGKQSAGVDGV 304 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I Y + ++ + D+ S L+K Sbjct: 305 GIGLYLTRDIVNKQNGYIKV-ASDEKGTTFSLFLKK 339 >gi|148658249|ref|YP_001278454.1| nitrogen specific signal transduction histidine kinase NtrB [Roseiflexus sp. RS-1] gi|148570359|gb|ABQ92504.1| signal transduction histidine kinase, nitrogen specific, NtrB [Roseiflexus sp. RS-1] Length = 516 Score = 41.8 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 20/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAII 62 + + L A+ L + I H++ +P+ AI L L E + ++L + Sbjct: 276 VRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCAPETPNQHFLRLAEEEIERIVR 335 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116 L+ +R + V + + + ++ + ++ R++V + + Sbjct: 336 VLERLRDLYRPRADVFTNVDVNELIESVLLLTGKQLERSRIRVVRELTPNLPTIQGVADQ 395 Query: 117 --KILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++LLNL + A ++P GG + + + + ++ G PE+ T+I D Sbjct: 396 LKQVLLNLVLNAAEAMPNGGILHVQTHRAHLASGQEAIAIAITDTGVGI-PPEQLTRIFD 454 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + Y + + + + I ++ Sbjct: 455 GLHTTKERGMGLGLYTSKAIVERHLGSISVQSIPGEGTTFEIMVP 499 >gi|21107860|gb|AAM36536.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 676 Score = 41.8 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 15/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-T 74 + HD + + AI LELL + +++ + S+ A + + LAF Sbjct: 308 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 366 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127 + + + + + + D IA ++ D + + + LLNL + A Sbjct: 367 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 426 Query: 128 ASLPRGGKVTISVQD 142 ++P GG++TIS+ + Sbjct: 427 DAMPDGGQLTISLHN 441 >gi|116622423|ref|YP_824579.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225585|gb|ABJ84294.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 690 Score = 41.8 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 10/126 (7%) Query: 39 LLDEVGIEDEVMQLIRL-------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE 91 LL + G+ M +R + L F R G+ ++D + + + ++E Sbjct: 353 LLSDAGLSQRTMTGLREIRCAGDRGAELTGQLLAFSRKQIGHPRALDLNALVRESQGMLE 412 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + D R+ VS + +R ++ L+NL + A ++P GG + I + + Sbjct: 413 RLLGEDVRLAVSLDPAASAIRADRGQMHQVLMNLVVNAREAMPEGGTLWIETANVTEGGL 472 Query: 149 FSLKIN 154 +++ Sbjct: 473 GYVRLR 478 >gi|239905563|ref|YP_002952302.1| sensor protein KdpD [Desulfovibrio magneticus RS-1] gi|239795427|dbj|BAH74416.1| sensor protein KdpD [Desulfovibrio magneticus RS-1] Length = 889 Score = 41.4 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 19/218 (8%) Query: 15 VALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVM-QLIRLSSMSAIIRLK-----FM 67 ALL S + HD +P+ AI S E LL + + + + RL+ + Sbjct: 668 AALL-STVTHDFKTPLSAIAGSAESLLALGEATTPEVRRSLEENIAQEASRLERLVDNLL 726 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERA---KI 118 R+A +GSV I L IE V+ +A V + + + + ++ Sbjct: 727 RIAALESGSVVPDIKLIPIEDVVGSALARLDATLAGHAVHLDIPDDLPPIPMDEVLMEQV 786 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDGNVESTI 176 L+NL A P G ++ +S ++ + ++ G PEK + S+ Sbjct: 787 LINLLENAAKHTPLGTEILVSAAIRGHKAVIEVRDAGPGLPPGDPEKLFERFQRGDRSST 846 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + +L Sbjct: 847 SGYGLGLAICRAVVKAHGGSITADRNRPAGAAFTVILP 884 >gi|168699112|ref|ZP_02731389.1| Multi-sensor Hybrid Histidine Kinase [Gemmata obscuriglobus UQM 2246] Length = 1099 Score = 41.4 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 12/167 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 I HD+ + + I +L+ L + E++ ++ + A ++ + L F G ++ Sbjct: 734 IAHDLNNALAPITMALQTLKHSYPDHAELLDVLEAGAGRAAGMVRQL-LTFAKGGEENTR 792 Query: 81 IG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 I L + E+++ + + V++ L ++ LLN+ + A ++P Sbjct: 793 IAVSARAVLTEAEKIVHSTFPKNIALTVTYPPGLPALLANPTQLHQVLLNMCVNARDAMP 852 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 GG +T+S + ++ + + + AR P + + G+ I + Sbjct: 853 AGGALTLSAEAAELDQAAADALAEFGAR-PGSYVVLKVGDTGGGIPA 898 >gi|218778402|ref|YP_002429720.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759786|gb|ACL02252.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 847 Score = 41.4 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 25/144 (17%) Query: 24 HDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSSMSAII---RLKFMRLAFGYTG 75 HD + + A++ ++L + + Q + +A + L F R Sbjct: 479 HDFNNLLQAMNGFVELAGMDLPRDHRSRPFLEQTLTAGRRAANLVQQLLLFSR------- 531 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDL-----SRERAKILLNLFMV 125 S D D+ ++D + + R+ QV W L ++L+NL + Sbjct: 532 SKDMQFKYMDLNTAVDDLLKMVGRIIGTDIQVQWRPWNSSLTIHADPGMMDQVLMNLCVN 591 Query: 126 AHASLPRGGKVTISVQDSKNENIF 149 A ++P GG +TI+ + + F Sbjct: 592 ARDAMPNGGVLTIAASIMEADAPF 615 >gi|94496319|ref|ZP_01302896.1| two-component sensor histidine kinase [Sphingomonas sp. SKA58] gi|94424065|gb|EAT09089.1| two-component sensor histidine kinase [Sphingomonas sp. SKA58] Length = 565 Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 28/236 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL-IR 54 ++++ L M+++ L + HD + + I L+L+ E M L Sbjct: 197 SQDMLRQLQKMEVMGQLTGHVAHDFNNLLTPIIAGLDLILSPRRTPESIDRHAGMALQAA 256 Query: 55 LSSMSAIIRL-KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL 111 S+ + RL F R + + L D+ +E +A R+ +S Sbjct: 257 ESAQILVQRLLTFAR----RQPLSPTAVHLPDLLAGMEALLASTLGPRITLSTDLPADLP 312 Query: 112 S----RERAKI-LLNLFMVAHASLPRGGKVTISVQ--------DSKNENIFSLKINGNLA 158 + ++ +LNL + + ++P GG +TI + + +++ G Sbjct: 313 PVHADANQLELAILNLAINSRDAMPDGGTLTIEAERLSPPQGLAPGDYVRITIRDTGTGM 372 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ ++ + H + LA + L + + + L Sbjct: 373 -TPDVRKAAIEPFFTTKTGGHGLGLSMAHGLAGQLGGTLQIDSEEGAGAAILLWLP 427 >gi|83645344|ref|YP_433779.1| osmosensitive K+ channel histidine kinase [Hahella chejuensis KCTC 2396] gi|83633387|gb|ABC29354.1| Osmosensitive K+ channel histidine kinase [Hahella chejuensis KCTC 2396] Length = 527 Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 15 VALLCSRICHDIISPIGA-IHNSLELLD--EVGIEDEVMQLIRLSSMSAI-------IRL 64 ALL S + HD+ +P+ A I ++ LL + +++ +L+ + A L Sbjct: 287 AALLSS-VSHDLKTPLAAMIGSAGSLLQYHDRLSDEDRKELMETTLQEAERLDRYIQNLL 345 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN--- 121 RL +G L DI + + + D+ L Sbjct: 346 DMTRLGYGALKLHRDWTSLHDIVGAAVKRLVNELKPLKVNIELAPDIPLLYVHAALLEQA 405 Query: 122 LFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L + + P GG++ I I + G E+ Sbjct: 406 LINILENAAKFSPEGGRIDILASVESTSLIIDVIDQGPGIPPEER 450 >gi|325168814|ref|YP_004280604.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325064537|gb|ADY68226.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 701 Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 15/150 (10%) Query: 24 HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGYTGSVDSL 80 HD + + A+ +LELL + VG + ++LI + A L LAF + D Sbjct: 345 HDFNNLLMAVLGNLELLRKYVGNDARAVRLIEGAQQGAKRGASLTQRLLAF--SRRQDLR 402 Query: 81 IGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHASL 130 I D+ ++ + KR V + + ++ LLNL + A ++ Sbjct: 403 IDPVDMRALVAGMEDLLKRSVGSTVVIKTDVPDHLPLVSADANQVELALLNLVVNARDAM 462 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF 160 P GG++ I + D GN Sbjct: 463 PDGGEIVIGLHDVHQNVQAGELAAGNYVVL 492 >gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1032 Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Query: 24 HDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYT 74 HD + + I+ E+L DE + + IR + A L F R A Sbjct: 654 HDFNNLLTVINGYSEVLLAGMSDESDPDRRAVAAIRDAGERAAALTSQLLAFSRRAVLKP 713 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLP 131 +D + + +++ I D R+ + + + ++L+NL + A ++P Sbjct: 714 RVLDLNKVVAETGKLLGRLIGEDVRLSTALDPRAGRVSVDPGQFGQVLMNLAVNARDAMP 773 Query: 132 RGGKVTISVQ 141 GG++TI + Sbjct: 774 TGGQLTIETR 783 >gi|86159761|ref|YP_466546.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776272|gb|ABC83109.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 581 Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRL---- 64 + R+ H+I +P+ I S+E L E + Q I + Sbjct: 359 VARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEGTQAIGEEVRRLKRIVDEFS 418 Query: 65 KFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNL 122 +F RL A + + V+ ++ + R++ ++LLNL Sbjct: 419 RFARLPAPERAEVPAEELAAAVLALFPAAPPGVEVERAIAPDLPAVLADRDQVMQVLLNL 478 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A ++P GG++ ++ ++ F + +G P ++ + + + Sbjct: 479 VRNALDAMPSGGRLRLAAYRDRDAVAFEVSDSGPGI-APGDLERVFEPYFTTKPGGTGLG 537 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A E+ L + L Sbjct: 538 LAIARRIAEEHGGALDAASSPGAGATFTLRLP 569 >gi|148266201|ref|YP_001232907.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399701|gb|ABQ28334.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 476 Score = 41.4 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 46/229 (20%) Query: 18 LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L S I H+I +P+ I ++ ELL + ++ I + + + +M L F Sbjct: 255 LASGIAHEIRNPLNYISLAIDHLKSELLPSCPERGKELESIADNIKEEVRKANYMVLNFM 314 Query: 73 YTGSVDSLIGLGDIE--------------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 G + L ++ ++ E I V + + Sbjct: 315 NYG-RPLKLRLHEVRYPELISKAMPLLQDKLNEQHIEVVEDIPAD-LPPMQVDPELMRNC 372 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 L N A ++P GGK+T+ +N+F L F G + ID Sbjct: 373 LFNFITNAAQAMPDGGKITLGAAFVAGDNLFRLT-----------FADQGSGIAPNDID- 420 Query: 179 HDIQFYYVILLA-------------HENKIRLLPEIIDDHNVVLSALLE 214 Q Y+ A E+ ++ E + + +L Sbjct: 421 KIFQPYFTTKEAGIGLGLAITERIIKEHGGEMVVESQLGNGTTFTIILP 469 >gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 970 Score = 41.4 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 31/208 (14%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRL-------SSMSAIIRLKFMR 68 LL + + H++ +P+ I + ++L ++ ++ L+ +S L F R Sbjct: 748 LLAAGVAHEVNTPLAVISSYAQMLSKQLQGDERRSALLEKITTQTFRASEIVNNLLNFSR 807 Query: 69 LAFGYTGSVD-SLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSR---ERAKI--- 118 TGS + + + + + + RV+V L + K+ Sbjct: 808 -----TGSSEFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAPT-LPKIYGNTGKLQQV 861 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 LNLF+ A ++P GG ++I+ ++ + + G+ PE +I D + Sbjct: 862 FLNLFLNAKDAMPSGGTLSITTRNGR-AVEVEVCDTGSGI-APEHIQRIYDPFFTTKKSP 919 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHN 206 L + + II +H Sbjct: 920 RQGHSGGTGL-----GLAVTYGIIQEHA 942 >gi|254521427|ref|ZP_05133482.1| sensory box histidine kinase/response regulator [Stenotrophomonas sp. SKA14] gi|219719018|gb|EED37543.1| sensory box histidine kinase/response regulator [Stenotrophomonas sp. SKA14] Length = 914 Score = 41.4 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 24/159 (15%) Query: 22 ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72 I HD + + A+ LELL+ V + +++ R + A + + LAF Sbjct: 535 IAHDFNNMLTAVSMGLELLEMRVEQGRVDGLERYLEMARSGADRAAALTQRL-LAFSRRQ 593 Query: 73 --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 V ++ + + + I I ++ R + ++D + LLNL + Sbjct: 594 TLAPSSVRVAALVSGMLDI--LNRSIGPSINIETRFEDFEDAVRVDAPQLE-NALLNLCI 650 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKI---NGNLARF 160 A ++P GG + IS S ++ G+ R Sbjct: 651 NARDAMPGGGTIIISSSTEALAGTRSERLGLPAGDYVRL 689 >gi|75910540|ref|YP_324836.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704265|gb|ABA23941.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 759 Score = 41.4 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 74/206 (35%), Gaps = 52/206 (25%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEV---MQLIRLSSMSAIIRLK----FMR 68 L S I HD+ + + I +LL ++ ++++ +++ +K F R Sbjct: 396 LASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINAKRGADLVKQVLSFAR 455 Query: 69 LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAK 117 G I L ++ +++++ V W + Sbjct: 456 ------GVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSGDSTQLHQV- 508 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 L+NL + A ++P GG +TIS + E + ++ ++ Sbjct: 509 -LMNLCVNARDAMPNGGTLTISAE---------------NLLIDENYARM-------NLE 545 Query: 178 SHDIQFYYVILLAHENKIRLLPEIID 203 + Q +Y+++ + + + PE +D Sbjct: 546 AK--QGHYIMVTVSDTGVGISPENLD 569 >gi|121602917|ref|YP_989140.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis KC583] gi|120615094|gb|ABM45695.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis KC583] Length = 845 Score = 41.4 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 17/151 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVG--IEDEVMQL--IRLSSMSAIIRLKFMRLAFG-YTGS 76 I HD + + AI S +LL + L I+ ++ A ++ + LAF Sbjct: 477 IAHDFNNVLTAILMSCDLLLNTHRVSDPAHADLTNIKNNANRAAALVQQL-LAFSRKQTL 535 Query: 77 VDSLIG----LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAH 127 + L DI +I + ++++ W+ E S + ++NL + A Sbjct: 536 RPEKVDFTEFLSDIRNLILPLLGNHIQLKIIHGRDLWSVEVDQASFQCV--VMNLVINAR 593 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++P GG VTI+ + + L G A Sbjct: 594 DAMPDGGTVTIATNNITKQQSAELNYAGLAA 624 >gi|170695559|ref|ZP_02886703.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170139546|gb|EDT07730.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 509 Score = 41.4 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 30/182 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + + N LE+L ++I AI R L F R Sbjct: 164 HDFNNLLAVLSNGLEVLALQARTPLDKKMI-DGMRRAIDRGASLTQQLLSFAR------- 215 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRERAK---ILLNLFMV 125 + D+ +I +F + R ++ S + A+ LLNL + Sbjct: 216 QQPLQAQVHDLNGLIREFTPMLSRAGNRNTHVELGLHATHAFASVDAARFEAALLNLVVN 275 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++P GG VTI+ ++E + + G+ R + + + + + Sbjct: 276 AVDAMPTGGAVTITTDTVQSETEVTPALPAGHYVRIS---VADTGSGMSEDVLAQAFEPF 332 Query: 185 YV 186 + Sbjct: 333 FT 334 >gi|167647630|ref|YP_001685293.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167350060|gb|ABZ72795.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 653 Score = 41.4 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 40/225 (17%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 + HD + + A+ SLEL+ + ED + LI + A L LAF + Sbjct: 289 LAHDFNNLLTAVLGSLELVRKRLPEDPRISPLIDNAIHGAQRGAVLTQRMLAF--ARKQE 346 Query: 79 ---SLIGLGDIEQVIEDFIAVDKRVQVSWT------GEKIDLSRERAK-ILLNLFMVAHA 128 + L + + + + + LLNL + A Sbjct: 347 LRLEPVDLPALATGMAGLFQRSVGPAIQIQTSFPAGLAPALTDANQLENALLNLVVNARD 406 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDSHDIQFY 184 ++P GG + I + ++ P + ++ +++ + + + Sbjct: 407 AMPEGGVIRIEASNE------TVAAASASGLPPGDYVRLAVIDTGQGMDAETRARATEPF 460 Query: 185 YV---------------ILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y LA ++ RLL + L Sbjct: 461 YTTKGVGKGTGLGLSMVHGLAEQSGGRLLIRSEAGEGTAMEMWLP 505 >gi|194292456|ref|YP_002008363.1| histidine kinase of the two-component signal transduction system [Cupriavidus taiwanensis LMG 19424] gi|193226360|emb|CAQ72309.1| Histidine kinase of the two-component signal transduction system [Cupriavidus taiwanensis LMG 19424] Length = 684 Score = 41.4 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 19/174 (10%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS-- 59 + L L + + H+I +PI I +L++ + + ++LI Sbjct: 447 ITSEKLALAGQLTAGVAHEINNPIAVIQGNLDVARDILGPAADPVRHELRLIDEQVRRIY 506 Query: 60 --AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKID-L 111 L+F+R + +G++ D + RV++++T + + Sbjct: 507 LLTNRLLQFVRPE--AYAGNTERLDVGEVAGGCVDLVRHMLKDAAIRVELAFTATRRVRI 564 Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEK 163 SR + +++NL A ++P GG +T++ QD + ++ G R + Sbjct: 565 SRSELQQVIVNLLTNAIHAMPDGGTLTLATQDWDAHGVTLHVRDTGRGIRAEDL 618 >gi|186685040|ref|YP_001868236.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467492|gb|ACC83293.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1298 Score = 41.4 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 12/133 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMRLAFG 72 I HD+ + + I + +LL ++DE + L+ ++ +K F R G Sbjct: 932 IAHDLNNILTPILAAAQLLQGTFLQDEERSGQLLALVESNAQRGAALVKQILSFARGFKG 991 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 + + +I Q++++ + + ++ ++ L+NL + A + Sbjct: 992 ERILIQVKYLIAEIIQIVKETFPKSIELSAIIPEDTWPITGNTTQLHQVLMNLVVNARDA 1051 Query: 130 LPRGGKVTISVQD 142 LP GGK+ ISV++ Sbjct: 1052 LPDGGKIAISVEN 1064 >gi|148547450|ref|YP_001267552.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511508|gb|ABQ78368.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 553 Score = 41.4 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%) Query: 22 ICHDIISPIGAIHNSLEL----LDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFG-YT 74 I HD + + +I +LEL L + + D ++L R ++ A ++ + LAF Sbjct: 181 IAHDFNNLLASILGALELAGQRLVQQRLADTAQLLELSRHNAQRAAALVQRL-LAFSRQQ 239 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK----ILLNLFMVAH 127 V + + + + D I+ V + + R A+ LLNL + A Sbjct: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYQDQTHAGLWPIRIDAQQLENALLNLCINAR 299 Query: 128 ASLPRGGKVTISVQD---SKNENIFSLKINGNLARF 160 ++P GG ++I + E G R Sbjct: 300 DAMPLGGTLSIGCANVDVQGAEARQRGLAAGQFLRI 335 >gi|168700450|ref|ZP_02732727.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 842 Score = 41.4 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 15/176 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRL----SSMSAIIRLKFMRLAFGYTG 75 HD + + I+ +LL E + + IR S+ L F R Sbjct: 475 HDFNNMLQVINGYADLLAEGLPPGDERAGVVAEIRKAGERSAALTSQLLAFARQQVAAPR 534 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHASL 130 VD D ++ I D R+ W + ++LLNL + A ++ Sbjct: 535 LVDVGAAAADTAGMLRPLIGEDVRLVTDLPRGGW--PVFVDPGQLEQVLLNLAVNARDAM 592 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 P GG +T++ + + + + + + + + + ++ Sbjct: 593 PAGGTLTVAARSEAVGPAEAALADMKAGEYTVLSVTDTGCGMPADVQARVFEPFFT 648 >gi|115373530|ref|ZP_01460827.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115369536|gb|EAU68474.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 812 Score = 41.4 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 35/227 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNS--------------LELLDEVGIEDEVMQLIRLS 56 L AL L + + H++ +P+GAI NS L L+D VG E + + I Sbjct: 582 RLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVGEEADRLNRIVD- 640 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLS--- 112 L F R + S + +E V+ +A ++V W E Sbjct: 641 -----DLLNFARP---PSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPPVLA 692 Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQI 167 R + LNL + + ++ +GG + + + ++E G+ + +I Sbjct: 693 DERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVRARI 751 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + + + E LL Sbjct: 752 FEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 798 >gi|257063842|ref|YP_003143514.1| signal transduction histidine kinase [Slackia heliotrinireducens DSM 20476] gi|256791495|gb|ACV22165.1| signal transduction histidine kinase [Slackia heliotrinireducens DSM 20476] Length = 556 Score = 41.4 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 23/214 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAI----IRLKFMRLAFGYT 74 H++ +P I +++L+E G D+ ++ IR ++ S L+ R+ G Sbjct: 334 HELRTPTTVIRAYIDMLEEEGDLDDEARRNAVKAIRTNAQSLSKLVDSILESARMEAGAV 393 Query: 75 GSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASL 130 +++ DI +E +A DK + + + G + K+L L + ++ Sbjct: 394 KLEKTVVDAADIMVEVEKTLTPLAQDKSIDLQVSYGNTPLFMADANKLLHILENLGSNAI 453 Query: 131 PR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVESTIDSHD 180 GG+V++S + ++ N E Q+V +V + Sbjct: 454 KYTGFGGEVSVSASLDEEAGEMRFVVSDNGIGISEADKQVVFEKFKQAGSSVSKPVSGSG 513 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + A + +L E + + Sbjct: 514 LGLALAKEYAELHGGSILLESALGQGSEFTVCIP 547 >gi|134299370|ref|YP_001112866.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052070|gb|ABO50041.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 575 Score = 41.4 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 18/166 (10%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----LKFM 67 L+AL L + + H++ +PIG I +EL+ + + + + + R ++ + Sbjct: 343 LIALGRLATGVAHELRNPIGIIKTLVELMKDEYSQVSGIDEFTKAVDEQVDRQNMVIQEL 402 Query: 68 RLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERA------K 117 L FG V + D+ + + F A R V V ++ L + A + Sbjct: 403 -LDFGRPTKVSIKECSVNDLLKGVLSFSAAMLRKENVTVHLHLDES-LPKIMADTEKLKQ 460 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +NL + A ++P GG + I + S+N + G EK Sbjct: 461 VFVNLIVNAAEAMPSGGTLDIKTEQSENLVTVTFSDTGEGIDLEEK 506 >gi|320160098|ref|YP_004173322.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993951|dbj|BAJ62722.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 528 Score = 41.4 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 31/226 (13%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLK----- 65 DL+A++ HD+ SP+ I +SLE+L+ +DE ++ + ++ + R++ Sbjct: 297 DLMAMVY----HDLRSPLSNIISSLEMLNMLLPVSDDENLRALLSIAIRSTGRMQRLINT 352 Query: 66 ---FMRLAFGYTGSVDSLIGLG----DIEQVIEDFIAVDKR---VQVSWTGEKIDLSRER 115 RL G + ++ + + I + VQ+ +++ + Sbjct: 353 LLDIYRLEAGQPITSRAMTEIAPLVYEAVDTILPVAENKGQQVDVQIEPNLPPLNIDADM 412 Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIV 168 ++L+NL A GK+T+SV F+++ NG +KF ++ Sbjct: 413 IRRVLINLLDNATKYTLFKGKITLSVYRKGERVEFAVRDNGPGIPPDALEVIFDKFARLQ 472 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + L + + E + + L Sbjct: 473 SERFPKGI---GLGLAFCRLAVRSHGGEIWVESKLNEGSCFTFALP 515 >gi|95931005|ref|ZP_01313733.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132901|gb|EAT14572.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 502 Score = 41.4 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 22/144 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMRLAFGYTG 75 H+I +P+ I ++ +L + +D+ + I + +A L F G G Sbjct: 279 HEIKNPLAGISGAVTVLADDLAKDDPRRQVVQDILAQIARLNKTATDLLNF-----GRPG 333 Query: 76 SVD-SLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRERAK-ILLNLFMVA 126 S + + D+ + F+A +++ + R++ + +LLN+ + A Sbjct: 334 SPQCDFVDVNDVVKQTLFFVAQHPEAKNIHQITELTRDLPPVWADRKQIQQVLLNIIINA 393 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 S+P GG +T+ + ++ + Sbjct: 394 LQSMPNGGSLTVQTELTREHDERR 417 >gi|70732212|ref|YP_261968.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5] gi|68346511|gb|AAY94117.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5] Length = 567 Score = 41.4 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 12/149 (8%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGS 76 + H+I +P+G I + +LL + + ++ +I S + +F+ A Sbjct: 351 LAHEIRNPLGIIKTATQLLHRRANLPENDKRHLEYVISEVSRINDLITEFLDFAKPSAPI 410 Query: 77 VDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHAS 129 + + +E+++ + + ++ L +R+ + LNL + A + Sbjct: 411 RATQLARPLVEELLGFCTPELATHNIDARIDDQAPGATLHADARQLKQACLNLILNAIDA 470 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158 +P GG++T+ + +E I S+ G Sbjct: 471 MPDGGRLTLGISQRDDETIISVSDTGQGI 499 >gi|95931397|ref|ZP_01314107.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132553|gb|EAT14242.1| periplasmic sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 497 Score = 41.4 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 21/214 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS---AIIRLKFMRLA 70 L S I H++ +P+ A LELL +E D + + + S L F A Sbjct: 282 LTSGIAHELGNPLSASIGYLELLKKRCEEPKNRDLIERALNESHRMDQLIKDLLDFA--A 339 Query: 71 ----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123 G+ S + + +++ ++ + W + +S K+ L+NL Sbjct: 340 PDHESGHANCAPSDVLKHSCDMLLQQGALKERHLSTDWPEQLSHVSIPPIKLQQVLVNLI 399 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHD 180 + A + G +TI+ ++ ++ ++ NG F Sbjct: 400 LNARDATDSYGAITITATENDSKITIKVEDNGHGIEGQSLETIFDPFYTTKAPGK--GRG 457 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y L H+ + L + L Sbjct: 458 LGLYVSYQLVHDARGELQATSTQGKGSCFTVTLP 491 >gi|163783058|ref|ZP_02178053.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881738|gb|EDP75247.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1] Length = 339 Score = 41.4 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 28/227 (12%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--- 60 ++ LSS+ +AL I H I +P+ I +LE L++ E ++IR + + Sbjct: 123 SLSQKLSSVGFLAL---GIAHQINTPLSTILLALEELEDKLGTSEETEVIRSAVNTCKDY 179 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDL- 111 + +L F+ S+ DI + ++D + +++ G+ L Sbjct: 180 VDKLLFL-------VKRSSVKDFVDINKAVKDSVELLKMYAKERGVEIRLHLKGDGYILG 232 Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167 + + ++LNL + A P G V + + +N + ++ G E F Sbjct: 233 NESDIRHLVLNLVINALQVSPYGESVEVVSEVGENAWMLRVEDRGPGIEPDELSKIFIPF 292 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G +S + + V + E + + Sbjct: 293 YQGKSKS--EGAGLGLAIVDSILREYGGSINVRSTPGEGSTFELSIP 337 >gi|153006016|ref|YP_001380341.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029589|gb|ABS27357.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 437 Score = 41.4 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 26/173 (15%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----- 64 + L L + HD++SP + ++LL + +L+ S S RL Sbjct: 212 EATRLKDLFADILRHDLLSPAATLRMGIDLLAKNEASPAATRLLEKMSRS-CARLTDLIE 270 Query: 65 ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSR 113 K+ ++ + + D+ +V++D IA R +S GE + Sbjct: 271 HAAKYAKI----STLEQLELDTLDLRRVLQDVIADFQETLQEDGLRSSLSSLGELPVRAN 326 Query: 114 ERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + +L GG VT+ V+D+ + ++ G R +K Sbjct: 327 PLVSEVF--ANLVSNALKYGRAGGTVTVGVEDAGEHWVVAVTDCGEGIRDEDK 377 >gi|317487012|ref|ZP_07945820.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316921694|gb|EFV42972.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 585 Score = 41.0 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 25/221 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSS----MSAI 61 LVAL + + I H++ +P+ AI L E E E + ++ Sbjct: 368 RLVALGNMAAGIAHEVRNPLSAIK-GLARFFMEASPEGSDESRMADIMTREVLRLDKVVG 426 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLS----RE 114 L F R + +GL ++ + D + D ++++ + LS R+ Sbjct: 427 DLLDFAR----PDVLNLTDVGLNELVERARDMVRSDMDARKIRFEAELPEPPLSVRLDRD 482 Query: 115 RA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 R ++LLNLF+ A ++P GG++ + + E + G PE+ I Sbjct: 483 RMTQVLLNLFLNAVQAMPDGGRLMVRARMEGTELALDVADTGCGI-APERLADIFSPYFT 541 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + V Sbjct: 542 TKASGTGLGLSIVHKIVEAHDGTIEVASTPGEGTVFKLRFP 582 >gi|152986808|ref|YP_001345964.1| sensory histidine kinase CreC [Pseudomonas aeruginosa PA7] gi|150961966|gb|ABR83991.1| two-component sensor CreC [Pseudomonas aeruginosa PA7] Length = 474 Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 24/203 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78 H++ SP+ AI + ELLD ++ + + + + RL+ + LA Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVANIAGESE-RLQQLIERLLSLAQVEQRQGL 323 Query: 79 SLIGLGDIEQVIEDFIAVD-KRVQVSWTGEKIDLSRERA---------KILLNLFMVAHA 128 +G D+ +V E + R+Q + L A + L NL A Sbjct: 324 EEVGPVDLREVAEALLEGQAARIQRQGLTVEKRLDGPCAIRGERFLVRQALANLLDNALD 383 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182 P GG++ +S + L G AR E+F + + Sbjct: 384 FTPPGGRLRLSAEVDGKGVALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443 Query: 183 FYYVILLAHENKIRLLPEIIDDH 205 F V +A + RL +D Sbjct: 444 F--VAEVAQLHGGRLQVGNHEDG 464 >gi|317502227|ref|ZP_07960400.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088793|ref|ZP_08337703.1| hypothetical protein HMPREF1025_01286 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896342|gb|EFV18440.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330407316|gb|EGG86819.1| hypothetical protein HMPREF1025_01286 [Lachnospiraceae bacterium 3_1_46FAA] Length = 341 Score = 41.0 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 19/216 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAI----IRLKFMRL 69 L S I H I +P+ A + +LL + G+ DE + +++S +K RL Sbjct: 123 LISDISHQIKTPVAAANTFAQLLGDTGLSDEERSEYIATLQMSLEKLTFLTNSLIKMSRL 182 Query: 70 AFGYTGSVDSLIGLGDI-EQVIEDFI--AVDKRVQVS---WTGEKIDLSRE-RAKILLNL 122 G L DI Q ++ A DK + ++ + L A+ + N+ Sbjct: 183 ESGIIRLKPEQNSLNDIVMQAVKTVYAKARDKNITITFDCGQTFEALLDFNWTAEAVTNV 242 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179 A P GG V + + + + + NG E F + G + +D Sbjct: 243 LDNAVKYTPSGGVVDLKITEYPSYLRLDVSDNGIGIPEEEQAKIFGRFYRGKQSAGVDGV 302 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I Y + ++ + D+ S L+K Sbjct: 303 GIGLYLTRDIVNKQNGYIKV-ASDEKGTTFSLFLKK 337 >gi|33469600|gb|AAQ19841.1| signal transduction protein [Alcaligenes faecalis] Length = 491 Score = 41.0 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 29/169 (17%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRL------- 55 L + L A+ + + + H+I +P+G + N+L+ L++ G D + L+ Sbjct: 272 LVTQRLAAVGRVAAGVAHEINNPLGGMLNALDTLEKHGSPDPLTQKTVGLVSRGLSQIRA 331 Query: 56 --SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---ID 110 S++ RL + G D+ +IE + ++V + W +D Sbjct: 332 TVSALLVEARLDSPLMTLG---------DWEDLRTLIEPQLE-QRQVHLVWDVPDLPTLD 381 Query: 111 LSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 L + + LNL + A ++ GG V ++ + G Sbjct: 382 LPAHLIRQLTLNLLLNARNAVDSGGTVACVAVVERSALSIQVSNTGQHI 430 >gi|302038879|ref|YP_003799201.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606943|emb|CBK43276.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 786 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 19/151 (12%) Query: 84 GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISV 140 D+ +++ I + + + + + ++ LLNL + A ++P GG +TI Sbjct: 491 RDLMALLKSLIGEHISIVLQLDPLPLWVKADAVQLEQVLLNLAVNARDAMPHGGTLTIDT 550 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI-QFYYVIL----------- 188 + E ++ + AR + G I + ++ Sbjct: 551 RQVSREEVWGTDHDSRTARTYVRLRVHDTGTGIDPATKAKIFEPFFTTKPPGRGTGLGLS 610 Query: 189 ----LAHENKIRLLPEIIDDHNVVLSALLEK 215 + H++ + E +S L + Sbjct: 611 TVYGIVHQSGGTITVESAVGQGTTMSVFLPE 641 >gi|317052603|ref|YP_004113719.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316947687|gb|ADU67163.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 531 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 13/205 (6%) Query: 22 ICHDIISPIGAIHNSLELLDE--VGIEDEVMQLI---RLSSMSAIIRLKFMRLAFGYTGS 76 I H+I +P+ AI L+ L +E E +L+ R + + +R Sbjct: 317 ISHEIKNPLNAISMGLQRLSMEVPQLEPEQQELLYSMRSAVERTSRIVSALREYAHPVQP 376 Query: 77 VDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129 I + + F D V+V W + + L NL A + Sbjct: 377 RCQQIDPQQLVSSVLSLYRNGFTQQDITVEVDWQFTGSLSADPELLCQALENLVKNALEA 436 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 P GG++T+ + ++ + L+ +G +++ V S + + Sbjct: 437 APHGGRLTVGLYRQEHHLVMILENSGYDGS-SVHMDHLLEPYVTSKTQGSGLGLPIARRI 495 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 + +L E ++ +L Sbjct: 496 VEAHGGQLFLESPQTGIFRVTVVLP 520 >gi|75910949|ref|YP_325245.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704674|gb|ABA24350.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 630 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 10/135 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIR---LKFMRLA 70 L S I HD+ + + I + +LL+ ++ +L I + A + L F R Sbjct: 267 LASGIAHDLNNVLAPILMTAQLLESQIKDERSQRLLPILITNAKRGANLVKQVLSFTRGL 326 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 G + +G+I+Q+I++ + + +S + ++ L+NL + A Sbjct: 327 EGERTLLQLKHLVGEIQQIIKETFPKSIELAAHISQNLWTVSGDATQLHQVLMNLCVNAR 386 Query: 128 ASLPRGGKVTISVQD 142 ++P+GG + I+ ++ Sbjct: 387 DAMPKGGTLKITAEN 401 >gi|256833022|ref|YP_003161749.1| histidine kinase [Jonesia denitrificans DSM 20603] gi|256686553|gb|ACV09446.1| histidine kinase [Jonesia denitrificans DSM 20603] Length = 360 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 14/156 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAFGYTG 75 + H++ +P+ A+H LE L + +E L S L R+ G Sbjct: 135 VSHELRTPVAALHAQLENLVDGVVEPTPATLHTALTQTERLSRLISYLLDLSRIEAGAAE 194 Query: 76 SVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAH 127 +GD + + K++ + DL +I+ NL A Sbjct: 195 LRVKEFAVGDFLEDAVGALTMLEAGKQLDFVVDVDPGDLTITSDPERLRQIVTNLVQNAI 254 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 P GG VT+ ++ +E + G ++ Sbjct: 255 RHSPYGGTVTVVAREEGDEVLLDFLDEGPGIAVEDR 290 >gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8] gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8] Length = 491 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIR 54 MA N+ + + L + + HD+ SPI +I LE + + + E Q Sbjct: 242 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVSMKDGDLPPEERQRYV 301 Query: 55 LSSMSAIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK 108 +++ RL + L+ T V+ I I ++++D + + R + + Sbjct: 302 TTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 361 Query: 109 IDLSRERAKI----------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 DL A++ L NL A P GG+V + + + + E ++ G Sbjct: 362 PDLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNKQGEVCVAVADTGPGI 421 Query: 159 R---FPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P F + + D + + + L E V L Sbjct: 422 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTVFRFRL 481 Query: 214 E 214 Sbjct: 482 P 482 >gi|159901168|ref|YP_001547415.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894207|gb|ABX07287.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 677 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 45/225 (20%) Query: 24 HDIISPIGAIHNSL----------------ELLDEVGIEDEVM-----QLIRLSSMSAII 62 HD+ +P+ AI N + ELLD + M L+ +S M A Sbjct: 458 HDLRAPLTAIINGMTMVRRGFAGPINDQQRELLDIANNSSQEMVGMINTLLDISKMEA-G 516 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119 L R S ++ E++I +VD + + + ++ +IL Sbjct: 517 ELVLNR----APCSAYEIVDRAS-ERLINSARSVDISINLDMALNLPIIDADQDKIVRIL 571 Query: 120 LNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGN------LARFPEKFTQIVD 169 NL A P GG VTI V+ K +S+ G A+ +KF Q+ Sbjct: 572 QNLLDNAIKFTPVGGSVTIRVRQLTDNEKQTICWSVIDAGPGIPESYRAKIFDKFVQVAG 631 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + + R+ E ++ S + Sbjct: 632 QRKGTGLG-----LAFAKLASEAHGGRIWVESVEGEGSTFSFTIP 671 >gi|332703497|ref|ZP_08423585.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio africanus str. Walvis Bay] gi|332553646|gb|EGJ50690.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfovibrio africanus str. Walvis Bay] Length = 586 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 117 KILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++LLNL M + A+LP GG+V ++ + + N+ + S+ NG P+ ++ + Sbjct: 487 QVLLNLIMNSLAALPETGGQVIVTAEPAGNDMLLSVADNGRGFS-PDAREHALEPFFTTR 545 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L ++ RL E + V+ L Sbjct: 546 AQGTGLGLAIAHKLVQDHGGRLEIESEEGRGAVVRVFLP 584 >gi|325109831|ref|YP_004270899.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970099|gb|ADY60877.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1434 Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 16/150 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--------LSSMSAIIRLKFMRLAFGY 73 + H++ +P+ I LE+L + E ++ +R L R+ G Sbjct: 1079 LAHELRNPLAPIRTGLEVLRVSDNDPETLEEVRGIMERQTQQLVTLVDDLLDVSRITRGK 1138 Query: 74 TGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMV 125 + L ++ + I + ++ A+IL NL Sbjct: 1139 MELRKCEVRLREVARNAIDTARPLIDEAGHRLIESFPDQPITLFVDPHRFAQILSNLLNN 1198 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A P GG + + + + ++ +G Sbjct: 1199 AAKYTPDGGTIEFKGELDGDTAVIRIRDSG 1228 >gi|327482749|gb|AEA86059.1| sensory box histidine kinase [Pseudomonas stutzeri DSM 4166] Length = 591 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 29/218 (13%) Query: 21 RICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS-------SMSAIIRLKFMRLA 70 R H++ +P+ + + LL E + L L F R Sbjct: 378 RASHELRTPVTGMQMAFSLLRERLRYPADSRESDLFDTVHEEMQRLVRLINDLLNFSRYQ 437 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERA-KILLNL 122 G + ++ + V+ ++++ + L R++ ++L NL Sbjct: 438 SGQQKLELEQCDVPELLEAARQRFEVNAAEQDVQLKLELQQPLPTLMLDRQQIERVLDNL 497 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTI 176 A PRGG+V + + I S++ NG AR E F QI + + Sbjct: 498 LSNALRHTPRGGEVRLLARHHGERLILSVEDNGEGIPYSQQARIFEPFVQIGRRRGGAGL 557 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + R+ H + L Sbjct: 558 GLAL-----CKEIAQLHGGRIGVHSRIGHGTIFYVALP 590 >gi|218782993|ref|YP_002434311.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218764377|gb|ACL06843.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 739 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 30/151 (19%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAII----RLKFM 67 LL + HD+ + + I + +LL E++ + +IR S + A L Sbjct: 367 LLAGGVAHDLNNVLSGIVSYPDLLMLDCPEEDKTMRDSLAIIRDSGLRASAIVMDLLTLA 426 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKID--LSRERA 116 R V + L + VI+D++ A R++V +T + + Sbjct: 427 R------RGVMEMEALN-LNAVIQDYLNSPEYNKLHAYHPRLKVRFTPDPDLHNIKGSEV 479 Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSK 144 K ++NL A S+P GG V IS +S+ Sbjct: 480 HLRKSVMNLVSNAAESMPNGGDVHISTMNSR 510 >gi|319788264|ref|YP_004147739.1| PAS/PAC sensor signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466776|gb|ADV28508.1| PAS/PAC sensor signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 802 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 61/139 (43%), Gaps = 13/139 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + I +L+L + E + + + S+ A + ++ + LAF + + Sbjct: 582 HDFNNLLAPIMAALDLAADPQANPERRARTVAVAQQSAERAAMLVQRL-LAFARKQPLQT 640 Query: 80 -LIGLGDIEQVIEDFIA--VDKRVQVSWTGEKIDLS----RERAKI-LLNLFMVAHASLP 131 + + + + I + D R++V + R + ++ LLNL + A ++ Sbjct: 641 VEVDVPALLEGIGGLMRSSFDPRIRVEVDADPGTPPAVGDRNQLEMALLNLGVNARDAMS 700 Query: 132 RGGKVTISVQDSKNENIFS 150 GG +T++ + ++ + + Sbjct: 701 EGGTLTLASRGAEIVDGIA 719 >gi|312960921|ref|ZP_07775426.1| periplasmic sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311284579|gb|EFQ63155.1| periplasmic sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 435 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 33/232 (14%) Query: 5 ICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED-------EVMQ 51 I FN + A L R I HD+ +PI + EL+D+ G +D E+ Sbjct: 211 IAFNAMQARIAAYLKERMQLLAAISHDLQTPITRMKLRAELMDDCGDKDKLWNDLGEMEH 270 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 L+R + R G T ++ ++ D+ + K VQ+S + Sbjct: 271 LVREGVA-------YARSVHGATEESRRTDLDSFLDSLVFDYQDMGKDVQLSGKSNAVIH 323 Query: 112 SRERA--KILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLK-----INGNLARFPE 162 +R A ++L+NL +L G ++ + +D + ++ + LAR E Sbjct: 324 TRPHALRRVLVNL---TDNALKFAGAAQLRVEPKDGDSLSVTVMDRGPGIAEEELARVIE 380 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ + ST + LA L + + L Sbjct: 381 PFYRVENSRNRST-GGTGLGLAIAQQLAQALGGSLTLRNREGGGLCAELRLP 431 >gi|171910863|ref|ZP_02926333.1| integral membrane sensor signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 464 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 19/218 (8%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-- 65 + L L + + + H+I +P+ AI EL G I S R++ Sbjct: 239 QAEKLAVLGRMTAALAHEIQNPVSAIKMHAELAALDGNAP-----IAEVIASEAARIEGL 293 Query: 66 -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERA 116 F+ + L L + V VQV R Sbjct: 294 VNQWMFLSRPEPPALQMVDLKPLLEAVVVTHGPQMRHAGVQVQLEVPGGIQIMADRRRLV 353 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++ NL + A ++P GG ++ + S G PE + + Sbjct: 354 QVFSNLLINATQAMPLGGLTLVTAIQEQGMVKISFADEGKGFS-PEALARFAEFFYSERE 412 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + L + VV L Sbjct: 413 GGMGIGLTVANEIVKAHGGTLSVVNLARGAVVTVELSP 450 >gi|108759412|ref|YP_633337.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108463292|gb|ABF88477.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 578 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 83/217 (38%), Gaps = 24/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSA---IIRLK------- 65 + R+ H+I +P+ I SLE L + + + S+ + RL+ Sbjct: 365 VARRLAHEIKNPLTPIRMSLETLQAAQEAKHPRFQDMFKESAGVVLEEVDRLRRIVDEFS 424 Query: 66 -FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKIL 119 F R+ + + LG+ + V+ + +Q+ T + ++R + ++L Sbjct: 425 HFARM----PKPQLAPVDLGELAQSVLALYATPPTGIQILPTLQTGVVARVDRDQLTQVL 480 Query: 120 LNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +NL A ++ GG + + V+ ++ + I ++ +G E +I + + Sbjct: 481 VNLVKNAEEAMASTGGTLRVRVRSTEADAIVEVEDSGPGIPL-EHRARIFEPYFTTKDGG 539 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E+ +L H S +L + Sbjct: 540 TGLGLAIASRILQEHGGKLEVGGEPGHGARFSLVLPR 576 >gi|322418889|ref|YP_004198112.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125276|gb|ADW12836.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 490 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVES 174 ++L+NL M A ++P+GGK+ + S + I + +G+ PE +++ D + Sbjct: 385 QLLINLIMNARDAMPQGGKLWLKGSCSGADVIIDVIDSGHGM-PPEHLSRVFDPFFTTKE 443 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A RL + + L Sbjct: 444 PGKGTGLGLAIAARIAESCGGRLDVQSELGKGSRFTLTLP 483 >gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 380 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 28/199 (14%) Query: 24 HDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSV 77 H++ +P+ AI +E L + E Q I + + R+ G Sbjct: 164 HELRTPLAAIKGYIEGLMDGVIPAEGNTYQQIHDEINRLQRLVDDLQELSRVESGAFHLK 223 Query: 78 DSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHAS 129 L+ L D+ I++ + ++Q+ + + ++R ++L NL A Sbjct: 224 PELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIEPNLPPVLIDKDRILQVLTNLVGNALQY 283 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA-------------RFPEKFTQIVDGNVES-T 175 P GGKVT+ + + E + S+ G R + + G+ T Sbjct: 284 TPSGGKVTVQISKQRTEILISVSDTGIGISPEHLPFIFNRFYRTDKSRARASGGSGIGLT 343 Query: 176 IDSHDIQFYYVILLAHENK 194 I ++ ++ + A Sbjct: 344 IAQALVKAHHGRIWAESGG 362 >gi|307725908|ref|YP_003909121.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586433|gb|ADN59830.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 509 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 30/182 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + + N LE+L ++I AI R L F R Sbjct: 164 HDFNNLLAVLSNGLEVLAIQSRTPIERKMI-EGMRRAIDRGASLTQQLLSFAR------- 215 Query: 76 SVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAK---ILLNLFMV 125 + D+ +I +F + +V+++ + A+ LLNL + Sbjct: 216 QQPLQAQVHDLNALIREFAPMLSRARNRNTKVELALQPGDTFALVDAARFEAALLNLVVN 275 Query: 126 AHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++P GG VTI + +++ G R + + + + + + Sbjct: 276 AVDAMPTGGTVTIGTRTVQSDADLPPGLAGGRYVRIS---VVDTGTGMPADVLAQAFEPF 332 Query: 185 YV 186 + Sbjct: 333 FT 334 >gi|312130844|ref|YP_003998184.1| integral membrane sensor signal transduction histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907390|gb|ADQ17831.1| integral membrane sensor signal transduction histidine kinase [Leadbetterella byssophila DSM 17132] Length = 342 Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%) Query: 22 ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGY 73 + H++ +PI AI ++LL + V++ I + L RL Sbjct: 130 LSHELKTPISAIIGGVDLLKDGNLAPAQRSMVLKEIETGALRLNTQVESLLNMSRL---E 186 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKI------LLNLFMVA 126 +G++ DI ++I I + + E IDL K+ L+ L ++ Sbjct: 187 SGTLKLKYDWTDINEMIFGVIEKMSKEHLRKIDFEPIDLP--LVKLDVGLIELVLLSLIR 244 Query: 127 HA---SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +A S+P GGKV +S Q + ++ + +++ G E+ Sbjct: 245 NAFRYSIP-GGKVCLSAQITNDQLVLTVEDEGPGIPEEER 283 >gi|146284366|ref|YP_001174519.1| sensory box histidine kinase [Pseudomonas stutzeri A1501] gi|145572571|gb|ABP81677.1| sensory box histidine kinase [Pseudomonas stutzeri A1501] Length = 595 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 29/218 (13%) Query: 21 RICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS-------SMSAIIRLKFMRLA 70 R H++ +P+ + + LL E + L L F R Sbjct: 382 RASHELRTPVTGMQMAFSLLRERLRYPADSRESDLFDTVHEEMQRLVRLINDLLNFSRYQ 441 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERA-KILLNL 122 G + ++ + V+ ++++ + L R++ ++L NL Sbjct: 442 SGQQKLELEQCDVPELLEAARQRFEVNAAEQDVQLKLELQQPLPTLMLDRQQIERVLDNL 501 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTI 176 A PRGG+V + + I S++ NG AR E F QI + + Sbjct: 502 LSNALRHTPRGGEVRLLARHHGERLILSVEDNGEGIPYSQQARIFEPFVQIGRRRGGAGL 561 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + R+ H + L Sbjct: 562 GLAL-----CKEIAQLHGGRIGVHSRIGHGTIFYVALP 594 >gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 962 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 17/166 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK-FMRLAFGYT 74 S + H++ +P+ ++ ELL ++ E + I + + F+ L + Sbjct: 593 STVSHELRTPLASVLGFAELLLTKKLKPERQQRYIATIYQEATRLTALINDFLDLQRMES 652 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKI---LLNLFMV 125 G + I+QVI D + + R ++ EK +S ++AK+ LNL Sbjct: 653 GRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTVVSGDQAKLHQVFLNLISN 712 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV 168 A P GG V + + N + ++ G P FT+ Sbjct: 713 AVKYSPHGGHVRVGCRQDGNRLLVEVQDEGLGIPSEAIPHLFTKFY 758 >gi|78221775|ref|YP_383522.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193030|gb|ABB30797.1| histidine kinase [Geobacter metallireducens GS-15] Length = 499 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 75/228 (32%), Gaps = 30/228 (13%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 + L ++ + + I H+I +P+ I ++ ++ + ED ++I Sbjct: 265 ADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFSDEDPRKEIIGEVVEQVSRLDKTV 324 Query: 64 --LKFMRLAFGYTGSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKIDL 111 L F FG + D+ ++ + K + ++ +I + Sbjct: 325 NDLLF----FGKPTPPEPTY--ADVNAILRKTLLFALQHKGGKNIAKSLDLADGLPEIFV 378 Query: 112 -SRERAKILLNLFMVAHASL-PRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ- 166 ++ ++ LNL + A ++ GG +T+ S+ D + I PE Sbjct: 379 DPKQVQQVFLNLILNAIQAMQADGGTLTVGSSLVDLDGKGWVRTTIADTGPGIPEPIIGK 438 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I + + L ++ L D V + L Sbjct: 439 IFTPFFTTKAQGTGLGLAICHKLITQHGGTLSVTSEDGKGTVFTIDLP 486 >gi|326402800|ref|YP_004282881.1| putative two-component hybrid sensor and regulator [Acidiphilium multivorum AIU301] gi|325049661|dbj|BAJ79999.1| putative two-component hybrid sensor and regulator [Acidiphilium multivorum AIU301] Length = 632 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 20/133 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SMSAIIRLKFMRLAFGY-T 74 + HD + + I +LE+L+ E +L+ + RL LAFG Sbjct: 267 LAHDFNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARL----LAFGRRQ 322 Query: 75 GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAK------ILLNLFMVA 126 I + ++ + V + L R A LLNL + A Sbjct: 323 TLRPLAIDVNELVGKMAPLFRRTLGSPVMIETRLAAG-LPRTMADPGQIETALLNLALNA 381 Query: 127 HASLPRGGKVTIS 139 ++P+GG++ I Sbjct: 382 RDAMPKGGRLVIE 394 >gi|163731784|ref|ZP_02139231.1| sensor kinase-like protein, putative [Roseobacter litoralis Och 149] gi|161395238|gb|EDQ19560.1| sensor kinase-like protein, putative [Roseobacter litoralis Och 149] Length = 765 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 19/131 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 404 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 459 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + + D + + ++V ++ T + + L R+ ++L+NL + A Sbjct: 460 LRPETLDMRDTLADLTHLLNRLVGEKVTLTLTHDPVLLPIRADKRQLEQVLMNLVVNARD 519 Query: 129 SLPRGGKVTIS 139 ++P GG++ I Sbjct: 520 AMPNGGEIRIE 530 >gi|160884705|ref|ZP_02065708.1| hypothetical protein BACOVA_02694 [Bacteroides ovatus ATCC 8483] gi|156109740|gb|EDO11485.1| hypothetical protein BACOVA_02694 [Bacteroides ovatus ATCC 8483] Length = 1392 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 81/219 (36%), Gaps = 33/219 (15%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGY 73 I H+ +P+ I ++E L D ++ + L+ SS L+F RL Sbjct: 869 ISHEFRTPLTIIRGAIEDLSNQKDLPPAANKQLGLLTKSSNRLLRLIDQLLEFRRL---- 924 Query: 74 TGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGE----KIDLSRERA-KI 118 ++ + L E V E F +A KR++ + ++ L R + KI Sbjct: 925 ---QNNKMELKLEETVAERFFYDIYLTFKDMAAKKRIEYLFESNDSTGRMLLDRSKMDKI 981 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES---T 175 NL A + P GGK+ + + S + F+L ++ + P + +++ E Sbjct: 982 AYNLLSNAFKNTPAGGKIVMRLDSSAENDTFTLSVSDSGPGVPAEKRKMLFVRFEQINYA 1041 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + LA +K + S + Sbjct: 1042 SDGTGVGLHLTAELAKVHKGNVAYSDSSLGGACFSLTIP 1080 >gi|148259594|ref|YP_001233721.1| PAS/PAC sensor hybrid histidine kinase [Acidiphilium cryptum JF-5] gi|146401275|gb|ABQ29802.1| PAS/PAC sensor hybrid histidine kinase [Acidiphilium cryptum JF-5] Length = 632 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 20/133 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SMSAIIRLKFMRLAFGY-T 74 + HD + + I +LE+L+ E +L+ + RL LAFG Sbjct: 267 LAHDFNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARL----LAFGRRQ 322 Query: 75 GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAK------ILLNLFMVA 126 I + ++ + V + L R A LLNL + A Sbjct: 323 TLRPLAIDVNELVGKMAPLFRRTLGSPVMIETRLAAG-LPRTMADPGQIETALLNLALNA 381 Query: 127 HASLPRGGKVTIS 139 ++P+GG++ I Sbjct: 382 RDAMPKGGRLVIE 394 >gi|197121353|ref|YP_002133304.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196171202|gb|ACG72175.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 530 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 17/219 (7%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA-------IIR 63 +L + L S + HD+ +P+ AI + LL + G+ D + L A Sbjct: 289 ELRSGLLSSVSHDLRTPLAAITGAATLLLDDGVNDPAIRRDLAATVVDEAERLERLVSNL 348 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL----SRERAK 117 L RL G + L ++ + + R +++ L + Sbjct: 349 LDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAGRPVAVAIPDELPLLSVDPILVQQ 408 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + +NL A P G ++ + + G E+ + Sbjct: 409 LFVNLLENATKHTPPGSEIAVRAVREGGTVAIEVADRGPGLPEGEEERIFERFQRAARPG 468 Query: 178 SHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + RL V L Sbjct: 469 VRGVGLGLPIARAIAQAHGGRLTAANRASGGAVFRLTLP 507 >gi|307824779|ref|ZP_07655002.1| multi-sensor signal transduction multi-kinase [Methylobacter tundripaludum SV96] gi|307734137|gb|EFO04991.1| multi-sensor signal transduction multi-kinase [Methylobacter tundripaludum SV96] Length = 659 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 19/215 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYTGSV 77 S + H++ SP+ +I + +LL+ +D+ +++ A +F L F S+ Sbjct: 438 SMVSHEVRSPLASIKTATQLLELQAKDDDSAAILQRILRGAHRLTQFFDNYLTFDRLNSM 497 Query: 78 -----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLFMVAH 127 + L + Q + D ++ + L + + + + L + Sbjct: 498 QWVLCQMSVDLPALLQTLRDHYTSIATHEIRLSLAPAVLQKRWLYADAQLLPVLLDNLLE 557 Query: 128 ASL---PRGGKVTISV-QDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD 180 +L P G +V +S S+ G E F + + Sbjct: 558 NALKYSPSGSEVELSAYIGKDGGLCLSVSDQGVGIAADELDLVFNKFFRSAQVGRVVGAG 617 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + Y V +A + + + + L + Sbjct: 618 LGLYLVRQIAGLHGGSVQMQSRPGQGTTATLTLPQ 652 >gi|218780111|ref|YP_002431429.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761495|gb|ACL03961.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 396 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 22/172 (12%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMS----AII 62 L A+ L + + H+I +P+ I S L+ E E E + LI ++ Sbjct: 162 KLAAIGRLAAGVAHEINNPLTTILTSAMLIQEDIPADNPEHEELALIAKEALRCRNIVSN 221 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK 117 L F R + S + DI + D R+ G +I ++A+ Sbjct: 222 LLDFAR----QSEPCKSDQDVNDIVAEAAALVRKPANFKDIRLTCDLHGREIQAHCDKAQ 277 Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 IL +NL + A + GG +T + N + + PE Sbjct: 278 ILQCLVNLALNAIDATEPGGTITFETKLLPEGNWMEITVADTGPGLPENIVD 329 >gi|46202628|ref|ZP_00052899.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 555 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 32/239 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57 M + + + + ++ A + S HD+ P+ + + L LL ++ + + I + Sbjct: 321 MERELQRSNAELENFAYVAS---HDLRQPLRMVSSYLTLLQRRLGESLDQDCREFIAYAV 377 Query: 58 MSA-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGE 107 A L + R+ G G+ + LGD+ ++ + + + ++ + Sbjct: 378 DGAQRMDHMITDLLGYSRI--GRGGAPQEKVDLGDVMKLAQANLGALIEENGADITVSEG 435 Query: 108 KIDLSRERA---KILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNL----- 157 + ++ NL A +G +V ++ S +E I S++ NG Sbjct: 436 LPVVMGNEVELERLFQNLISNAVKFQVKGRSPQVDVTWSSSTDEWIISVRDNGIGIDEAG 495 Query: 158 -ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 AR + F ++V + I +A + R+ E + V L K Sbjct: 496 QARLFQIFQRLVGQD---EYPGSGIGLASCRKIAEHHGGRIWVESVPGEGSVFHVALPK 551 >gi|86156964|ref|YP_463749.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773475|gb|ABC80312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 247 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 10/208 (4%) Query: 17 LLCSRICHDIISPIGAIHNSLEL-LDEV--GIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72 L + + H++ +P+ A+ ++L L E ++ + + L+ ++ A G Sbjct: 36 LDGATLAHELKNPLTAVKALVQLGLGNPREAASHERLEHVARAVERMERILRDYLASARG 95 Query: 73 YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNLFMVAH 127 + + +G + V++ A +V R + L+NL Sbjct: 96 MAELAPARVEVGPLVSGVLQGLSARASEARVRLVTHGDATVEADPRRLEEALVNLVANGI 155 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 + P GG+V + V S ++ G P+ ++ + + + +V Sbjct: 156 EATPPGGEVEVEVLSSAEGAELVVRDTGTGI-APDALQRLGTPFFSTRSGGNGLGVAHVR 214 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L E V+ A L + Sbjct: 215 SVIAMHGGSLQYESEPGKGTVVRATLPR 242 >gi|153003884|ref|YP_001378209.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027457|gb|ABS25225.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 441 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 1/117 (0%) Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 R+ R + LLNL A + P GG+V + V+ + +E ++ G Sbjct: 312 RLYAQGDATLEADPRRIKEALLNLVANAIEATPAGGEVVVEVRPAGDEAEIVVRDTGRGM 371 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 P+ +I + D + + ++ L E H + L + Sbjct: 372 -PPDTLRRIGTPFFTTREDGTGLGVVLARSVIAQHGGSLRYESEPGHGTRVRVTLPR 427 >gi|291548310|emb|CBL21418.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5] Length = 454 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 30/181 (16%) Query: 1 MAKNICFNLSSM---------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-- 49 M N+ +L + AL HD+ +P+ I + +LL E ++DE Sbjct: 217 MKDNLKISLERQWNTEQTQKEQIAALA-----HDLKTPLTVIQGNADLLTETNLDDEQRL 271 Query: 50 -MQLIRLSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKR 99 + SS ++ + R A GY ++S I L Q + ++ + R Sbjct: 272 YAGYVVESSGQMQSYIQTLIDISRAAVGYQLHIES-IDLPAFMQHLFGYMESLCRTKEIR 330 Query: 100 VQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 +Q++ L +R + ++N+ P+GG + + VQ + S+ G Sbjct: 331 LQMNTVSLPQMLKFDRVLIERAIMNVISNGLDYSPQGGTLYVDVQSNNGFVEISVTDEGT 390 Query: 157 L 157 Sbjct: 391 G 391 >gi|162453443|ref|YP_001615810.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164025|emb|CAN95330.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 511 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 31/236 (13%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR- 54 A+ + + V L + + HD+ +P+GA+ N+ L ++G E V Q + Sbjct: 264 AQEARMRMEKLAAVGQLAASVGHDLRNPLGAVRNANHYLKKRILGTDLGAEPRVAQFLSI 323 Query: 55 ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105 + L F R + +++D + + RV+V Sbjct: 324 IEKELAACAKIISNLLDFAR-------ERRPRFAACALRPLVDDAISVVEIPPRVRVDND 376 Query: 106 GEKID----LSRERAK-ILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLA 158 + +++ + +L+NL A ++P R G+V I+ + + + S+ +G Sbjct: 377 VPDTLPVVEIDKDQFRQVLVNLIQNAAEAIPAEREGRVRIAAERTGDGVTLSVVDDGTGI 436 Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E +I + + + + + + + L Sbjct: 437 S-EETLARIFEPLFSTKLKGTGLGLAISAGIVERHGGTIEATSALGSGTTFVVRLP 491 >gi|222054469|ref|YP_002536831.1| histidine kinase [Geobacter sp. FRC-32] gi|221563758|gb|ACM19730.1| histidine kinase [Geobacter sp. FRC-32] Length = 501 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 67/175 (38%), Gaps = 23/175 (13%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--- 65 + L ++ + + I H+I +P+ I ++ ++ E + I + I RL Sbjct: 264 ADRLASVGEMAAGIAHEIKNPLTGIAAAITIIKEDFAPSDSRTTIVDEVLEQIKRLDKTV 323 Query: 66 ----FMRLAFG-YTGSVDSLIGLGD-IEQVI------EDFIAVDKRVQVSWTGEKIDL-S 112 F FG + + I + + ++K++++ + + Sbjct: 324 NDLLF----FGKPAQPEPAFTDINSTIRKTLKFASQHRGSKNIEKKLELQEDLPPVYVDP 379 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQ 166 ++ ++LLNL + A ++ GG +TI K E + L + P + + Sbjct: 380 KQIQQVLLNLILNAMQAMHDGGTLTIRSAFEKKEQDWVLIMVKDTGQGIPAQILE 434 >gi|126732481|ref|ZP_01748280.1| sensor histidine kinase [Sagittula stellata E-37] gi|126707120|gb|EBA06187.1| sensor histidine kinase [Sagittula stellata E-37] Length = 420 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 14/152 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--Y 73 ++ S + HD+ +PI + L LLD+ E + L F R G Sbjct: 216 TMMLSGVSHDLRTPITRLRLGLSLLDDEDREPLERD-VEEMQRLIDTFLDFAR---GDAQ 271 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDLSRERAKILLNLFMVAHASL 130 G + + + I ++ED + V + GE R + + NL + Sbjct: 272 AGPPEPVDPMALITSIVEDAQRAGQNVSLGALDGQGEAALRPRSMRRAIENLI---GNAT 328 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 G + +S + E +++ + P Sbjct: 329 RYGTQCRVSA--NMTERSLRIRVEDDGPGIPP 358 >gi|307718408|ref|YP_003873940.1| sensor protein ZraS [Spirochaeta thermophila DSM 6192] gi|306532133|gb|ADN01667.1| sensor protein ZraS [Spirochaeta thermophila DSM 6192] Length = 678 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 28/211 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQL--IRLSSMSAIIR 63 L S + AL L + + H+I +P+GAI + L LL + L I Sbjct: 456 LISERISALGALSAGLAHEINNPLGAISSHLAYLLSVEENPERRESLLWIEKEITRIGNL 515 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQV----SWTGEKIDLSR 113 +K + + + G D++Q + D I A KR+ + + +S Sbjct: 516 VKTI-----LSHARGRTEGPCDVDQTLRDTIGLLTPQARQKRIALSYTSTGPLPSALISE 570 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD 169 K + LN+ A S+ GG + + + + + + G P F + Sbjct: 571 AELKQVALNILKNAMESIGEGGSIQVEARAVDDALVIAFHDTGPGFPEPSESHLFAPLFT 630 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPE 200 E T I + R+ Sbjct: 631 TKAEGTGLGMTI----THHIIQRAGGRIAVR 657 >gi|15595661|ref|NP_249155.1| sensory histidine kinase CreC [Pseudomonas aeruginosa PAO1] gi|254243560|ref|ZP_04936882.1| two-component sensor CreC [Pseudomonas aeruginosa 2192] gi|9946325|gb|AAG03853.1|AE004484_5 two-component sensor CreC [Pseudomonas aeruginosa PAO1] gi|126196938|gb|EAZ61001.1| two-component sensor CreC [Pseudomonas aeruginosa 2192] Length = 474 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 24/203 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78 H++ SP+ AI + ELLD ++ + + + + RL+ + LA Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVGNIAGESE-RLQQLIERLLSLAQVEQRQGL 323 Query: 79 SLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128 +G D+ ++ + R++V E R + L NL A Sbjct: 324 EEVGKVDLREIAASLLEGQAARIQRQRLRVENRLEGPCEVRGEQFLLRQALANLLDNALD 383 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182 P GG + + + L G AR E+F + + Sbjct: 384 FTPPGGILRLLAEADGEGIALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443 Query: 183 FYYVILLAHENKIRLLPEIIDDH 205 F V +A + RL DD Sbjct: 444 F--VAEVAQLHGGRLQVGNRDDG 464 >gi|299131770|ref|ZP_07024965.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298591907|gb|EFI52107.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 845 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 15/147 (10%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGY-TGSV 77 I HD + + AI + + LL+ D Q I +A +R LAF Sbjct: 476 IAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQLLAFSRRQTLR 535 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKILLNLFMVAHA 128 ++ LGD + + ++V++ W + E+ ++NL + A Sbjct: 536 PQVLDLGDALSDLTMLLKRLIGEKVKLDVVHGRDLWPVKVDVSQFEQV--IVNLAVNARD 593 Query: 129 SLPRGGKVTISVQDSKNENIFSLKING 155 ++P GGK+ + + +++ L+ G Sbjct: 594 AMPEGGKLAVKTSNVSAQDVARLQAKG 620 >gi|262198688|ref|YP_003269897.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262082035|gb|ACY18004.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 524 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 23/154 (14%) Query: 24 HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTG 75 HD+ SPIGAI NS EL L E E++ +I ++ +AI L F R G Sbjct: 318 HDLRSPIGAIVNSTELLRYELGEDSESRELLDIIEEAADNAIAVVDDVLDFTRE--GIPS 375 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL--SRERAKILLNLFMVAHA 128 + I ++ +E + V R +V+ E L R+ + L NL + A Sbjct: 376 RKECEI--AEVLGRLERSLEVRVRECGVNFRVTGPREGSLLCDPRKVHRALENLAVNALD 433 Query: 129 SL---PRGG-KVTISVQDSKNENIFSLKINGNLA 158 ++ P V I V +E F + NG Sbjct: 434 AVASSPTSAPAVWIEVAQEADEVRFLVCDNGPGI 467 >gi|145589847|ref|YP_001156444.1| osmosensitive K+ channel signal transduction histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048253|gb|ABP34880.1| osmosensitive K+ channel signal transduction histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 897 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 23/236 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH---NSLELLDEV--GIEDEVMQLIRL 55 +A++ + S L L S I HD+ +P+ A+ ++LE+LD + E+ L+R Sbjct: 653 VAQSSTVQIESERLRNSLLSAISHDLRTPLTALVGLTDALEMLDAPLTSEQKEIAVLLRE 712 Query: 56 SS----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKR-VQVSWTGEK 108 + L RL G + + + A + R + V+ + Sbjct: 713 KALKMSSQVSNLLDMARLQSGAVQLNKQWFLIEEAIGAAIKSVESASEGRHITVTLPPDL 772 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING----NLARFP 161 L+ + ++ +NL A+ P+ V+I S +++ + + Sbjct: 773 PLLNFDAVLIERVFINLLENAYKYTPKNSSVSIGASVSSPQSVEIWVQDDGPGLPKGKEE 832 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLA--HENKIRLLPEIIDDHNVVLSALLEK 215 + F + GN E I + I A + ++ + + + L + Sbjct: 833 DIFRKFERGNKEGAISG--VGLGLTICRAIIEAHGGKITGKTMAGGGARFTFSLPR 886 >gi|190574102|ref|YP_001971947.1| putative two component system histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190012024|emb|CAQ45646.1| putative two component system histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 377 Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 23/222 (10%) Query: 11 SMDLVALLCSRICHDIISPIGAI-----HNSLELLDEVGIEDEVMQLIRLS----SMSAI 61 ++ L + + + HD+ +P+ AI +LEL ++ + +Q + S + Sbjct: 152 ALKLNETMAAVLTHDLRTPLSAILLCTDKLALELPEDNAGAQQTLQYLEASTLRMARMVE 211 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGE---KIDLSRER 115 L F R+ G S L D+ + + R+ + G+ + DL R Sbjct: 212 QLLDFSRIRSGGLRLEASACDLADVTRAVVAEAGSAHGADRIHLDLQGDTRLQGDLDR-L 270 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ NL +L G + + V D ++ L+++ ++ + S Sbjct: 271 GQVAANLV---GNALTHGSEARVQV-DGRDPRGVLLRVSNAGRIDDALLPRLFEPFKASF 326 Query: 176 IDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S + Y V + R+ VV A+L + Sbjct: 327 HQSKGLGLGLYIVDQFVRAHGGRIAARNEAGQ-VVFEAMLPR 367 >gi|182413565|ref|YP_001818631.1| histidine kinase [Opitutus terrae PB90-1] gi|177840779|gb|ACB75031.1| histidine kinase [Opitutus terrae PB90-1] Length = 1452 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 24/179 (13%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAI-IR------LKFMRLAFGY 73 I HD + + I +L L + IE + ++ + S +A R L F + Sbjct: 1095 IAHDFNNLLTVIMGNLSLAKIDPKIEPDTVRCLSESERAAARARDLTQQLLTFAK----- 1149 Query: 74 TGSVDSLIGLG--DIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLFMVA 126 G + D+ + F +V+ + + A+++ N+ + A Sbjct: 1150 -GGEPMRMPTRLPDLVREAAQFALHGAKVRCDYQIASDLWPASVDRGQIAQVVHNIVINA 1208 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 + ++P GG++ I +Q+ S G R G T+ + YY Sbjct: 1209 NQAMPTGGRIEIGLQNEMVLEPRSGLEPGRYVRM--TVADSGAGIPAETL-GRIFEPYY 1264 >gi|108760411|ref|YP_628670.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108464291|gb|ABF89476.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 875 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 26/222 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHN--------------SLELLDEVGIEDEVMQLIRLS 56 L AL L + + H++ +P+GAI N ++ LLD VG E + + I Sbjct: 648 RLAALGELSAVVAHEVRNPLGAIFNSVASIRRIVGPDSAAVPLLDIVGEESDRLNRI--- 704 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---R 113 L F R + +V + D + RV++ + ++ R Sbjct: 705 ---VADLLTFARPPAPHPYAVPLSPLVEDAVRGALAEAPGQVRVELDLADDVPSVTVDER 761 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNV 172 + LNL + A ++P+GG + SV+ + ++ + P+ +I + Sbjct: 762 MMRQAFLNLAINAVQAMPQGGMLRASVRRATGTPEVEVQFVDSGPGISPDVRARIFEPFF 821 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + ++ R+ E L Sbjct: 822 TTKAKGTGLGLAVVKRIIESHQGRVALESQPGQGTTFRLYLP 863 >gi|301058125|ref|ZP_07199177.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300447757|gb|EFK11470.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 489 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 76/173 (43%), Gaps = 17/173 (9%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LI 53 + + L + L AL + + + H+I +P+G I ++ EL+ + +E ++ Sbjct: 255 QRELETQLDQAERLAALGQMVAGVSHEIRNPLGIIRSTAELMGSMSSGNESQAKLSGLIV 314 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKI 109 SS I +F+ A T + L +I Q ++ + K + + Sbjct: 315 EESSRLNNIVTEFLDFARPQTPNF-QDCDLNEILHKNIQFLQRELETRKILLQDGLPHRS 373 Query: 110 DLSRERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++L LN+FM A ++ GG ++ISV + ++ + +++ +G+ Sbjct: 374 LPLKADPQLLYRSFLNIFMNALQAMEDGGTLSISVSEDEDYYVVAVQDDGSGI 426 >gi|258405063|ref|YP_003197805.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257797290|gb|ACV68227.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 803 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 20/137 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLK----FMRLAFG 72 I HD + + I +LE++ + + L I+ S A ++ F R A Sbjct: 441 IAHDFNNVLHVISGNLEMMALRSNSQQAVGLNRIQTIQKSIDRASQLVQQMLLFSRKA-- 498 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRER-----AKILLNLFMV 125 S + L + + + K + + ++LLNL Sbjct: 499 --ESYKQSVDLNEEVEQTLHILERSVPKMISIETFLPDGLPPISADPVQVEQVLLNLGSN 556 Query: 126 AHASLPRGGKVTISVQD 142 A A++P GG+ + D Sbjct: 557 AEAAMPAGGRFIVETSD 573 >gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella copri DSM 18205] gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella copri DSM 18205] Length = 935 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 24/163 (14%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRLAFGY 73 I H++ +P+ I + +E LL++ GI + +L+++ +A+ L F ++ Sbjct: 412 ISHELRTPLTLIADPVEMLLEDTGIRGKSRELLKMVQRNALALQQLVSNILDFRKI---Q 468 Query: 74 TGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDLSRER---------AKILL 120 G ++ + DI + + DF +R Q+ + DL ++I+ Sbjct: 469 NGKMELKLYRFDIVKTLTMWVGDFQLTAERKQIRLHLDVDDLKGSHEMIADQEKISRIVF 528 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 NL A P GG++ +S++D +K G E Sbjct: 529 NLLSNALKYTPAGGEIFVSLKDEGTNLRLDVKDTGKGISQDEA 571 >gi|116054193|ref|YP_788637.1| sensory histidine kinase CreC [Pseudomonas aeruginosa UCBPP-PA14] gi|296386962|ref|ZP_06876461.1| sensory histidine kinase CreC [Pseudomonas aeruginosa PAb1] gi|313111909|ref|ZP_07797699.1| two-component sensor CreC [Pseudomonas aeruginosa 39016] gi|115589414|gb|ABJ15429.1| two-component sensor CreC [Pseudomonas aeruginosa UCBPP-PA14] gi|310884201|gb|EFQ42795.1| two-component sensor CreC [Pseudomonas aeruginosa 39016] Length = 474 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 24/203 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78 H++ SP+ AI + ELLD ++ + + + + RL+ + LA Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVGNIAGESE-RLQQLIERLLSLAQVEQRQGL 323 Query: 79 SLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128 +G D+ ++ + R++V E R + L NL A Sbjct: 324 EEVGKVDLREIAASLLEGQAARIQRQRLRVENRLEGPCEVRGEQFLLRQALANLLDNALD 383 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182 P GG + + + L G AR E+F + + Sbjct: 384 FTPPGGILRLLAEADGEGIALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443 Query: 183 FYYVILLAHENKIRLLPEIIDDH 205 F V +A + RL DD Sbjct: 444 F--VAEVAQLHGGRLQVGNRDDG 464 >gi|323703118|ref|ZP_08114772.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] gi|323531895|gb|EGB21780.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum nigrificans DSM 574] Length = 687 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 77/174 (44%), Gaps = 21/174 (12%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL- 64 L S+ L+ + + I H++ +P+ + L+L+ ++ E QL+ A + Sbjct: 472 LDSLGLLGKMAAGIAHEVRNPLTTVRGFLQLMKGKEDSTKHKEYFQLMIDELDRANSIIT 531 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEKIDLSRE 114 +++ LA + + ++ +I+D +A + V+++ + L+R+ Sbjct: 532 EYLSLA----RKNKTELESNNLNTIIKDIEPLITADAIHMAKNIEVKLT-DIPNLLLNRK 586 Query: 115 RA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++LNL ++P GG +T+ + + ++K G + PE ++ Sbjct: 587 EINQLILNLVRNGLEAMPEGGTLTVKTFKDGEQVVLAVKDQGPGIK-PEVIKKL 639 >gi|325921185|ref|ZP_08183051.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548327|gb|EGD19315.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 952 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 21/138 (15%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGYTG 75 + HD + + AI LELL E G D + + + + S+ A + + LAF Sbjct: 584 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVDMAQSSAARATALTQRL-LAF---S 639 Query: 76 SVDSLIGLG-DIEQVIEDF---IAVDKRVQVSWTGEKI------DLSRERAK-ILLNLFM 124 +L ++E ++ D IA +S + + + LLNL + Sbjct: 640 RRQTLAPTALEVEALVRDMHDIIARTLGPSISLQLRPAAESWKVLVDAPQLENALLNLCI 699 Query: 125 VAHASLPRGGKVTISVQD 142 A ++P GG++TI++ + Sbjct: 700 NARDAMPDGGELTIAIAN 717 >gi|332653310|ref|ZP_08419055.1| sensory box histidine kinase PhoR1 [Ruminococcaceae bacterium D16] gi|332518456|gb|EGJ48059.1| sensory box histidine kinase PhoR1 [Ruminococcaceae bacterium D16] Length = 312 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 17/219 (7%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI-------IRLK 65 + AL+ S I H +P+ + +LL+E + + + S+ A +K Sbjct: 81 QISALI-SDISHQTKTPVANLQLYAQLLEEQPLTPQGKDCAKAISVQAEKLQNLIEALVK 139 Query: 66 FMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 RL G + ++ + + + V G+ + ++ + L Sbjct: 140 ASRLETGILVLHPQNDELGPVVARAAAQYAPKAWDKEVSLTVVQGEGQAVFDAKWTEEAL 199 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTI 176 NL A P GG + + VQ+ + + + G E F + + Sbjct: 200 CNLLDNAVKYTPSGGSIRVEVQNYELFSAIQVSDTGPGIPEQEQAEIFGRFCRASGAYQQ 259 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D I Y +A + E + S L + Sbjct: 260 DGVGIGLYLTRQIAQHQGGYVKVESVLGKGSTFSLYLPR 298 >gi|149919887|ref|ZP_01908363.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149819334|gb|EDM78767.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 657 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLA 70 L S I HD + + I L I+++ +L I ++ A L F R Sbjct: 302 LASGIAHDFNNLLTVILGGASFLGMGAIDEDQRELVADIEDAAQHAAALTGQLLAFTRRE 361 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL---LNLFMVAH 127 V+ + +++ + + V E + + ++++ +NL + A Sbjct: 362 VVQRRRVEVAGAIEQCQRLFARLLDHGIELHVEVAPELPAIRFDESQLIQIVMNLVLNAR 421 Query: 128 ASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 ++P GG++ + E S++ +G + + +I + + + Sbjct: 422 DAMPSGGRIELRAVTGSGPSGEPELHLSVRDDGEGM-DADTYARIFEPFFTTKRTGTGLG 480 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + RL E V + + Sbjct: 481 LATIKDIVVAAGGRLSVESALGQGSVFTCCIP 512 >gi|27380375|ref|NP_771904.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353539|dbj|BAC50529.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 509 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 54/159 (33%), Gaps = 24/159 (15%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56 M K + + L L + HD + + I SL L D+ + I + Sbjct: 144 MQKQLAESQKFDALGQLTGG-VAHDFNNLLMIISGSLHTLKRGADDGAKLQRAISAIETA 202 Query: 57 SMSAIIR----LKFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVS----- 103 + L F R I L + I +V+E + R+ Sbjct: 203 TRRGAALTNQLLTFAR----RQSVNPQAIDLAERIGAIREVLEAGVGSAVRLAFDIAREV 258 Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 W E A LLNL + A ++P GG VTI ++ Sbjct: 259 WPIRTDVSEFETA--LLNLVINARDAMPDGGTVTIRARN 295 >gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 922 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 20/181 (11%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 I HD+ + + I E+L E + +++I +++ + ++ + LAF S+ Sbjct: 544 IAHDLNNLLTPILGYSEMLLKRIREPEKSKQYVEVIHHAALKSRELVRQL-LAFSSRQSL 602 Query: 78 D-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMVAHAS 129 + + L ++ + E + R + + +I++NL + A + Sbjct: 603 EFRTVDLNEVIRDFEQLLRRTIRADIDIRYHLHEQPLPMRGDASQLEQIIMNLAVNAEDA 662 Query: 130 LPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +P GG++ + V E F G+ A + ++ SH + +Y Sbjct: 663 MPAGGELIMESSLLVIKKGEEKYFEGLAAGSYALL---TVRDTGEGMDQKTLSHLFEPFY 719 Query: 186 V 186 Sbjct: 720 T 720 >gi|119357351|ref|YP_911995.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354700|gb|ABL65571.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 823 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 31/187 (16%) Query: 22 ICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 I HD + +G I +LE LD ++ IR ++ + ++ + LAF Sbjct: 458 IAHDFNNMLGVILGHTEIALEQLDPSESAYADLEAIRKAAARSAGLIRQL-LAF--ARKQ 514 Query: 78 DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-----SRERAKILLNLFMVAH 127 + + + ++E + + +R + + W E + + +IL NL + A Sbjct: 515 TVMPKIISLNTMVEGMLTMMRRLIGENITLVWIPENQNAKIKIDPSQIDQILANLCVNAR 574 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA----RFPEKFTQIVDGNVESTID----SH 179 S+ GG++TI ++ N N A R P + + + S ID H Sbjct: 575 DSIVGGGRITI------ETGRLCVQRNENTANHPCRIPGDYVTLAVTDNGSGIDKKHLPH 628 Query: 180 DIQFYYV 186 + ++ Sbjct: 629 IFEPFFT 635 >gi|332652347|ref|ZP_08418092.1| putative His Kinase A (phosphoacceptor) domain protein [Ruminococcaceae bacterium D16] gi|332517493|gb|EGJ47096.1| putative His Kinase A (phosphoacceptor) domain protein [Ruminococcaceae bacterium D16] Length = 552 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++L+NL A ++P GG++ I + ++ G PEK Q++ G + Sbjct: 455 QVLINLINNAVKAMPDGGQLEIRAEKEPEGVCLTVTDTGVGM-GPEKLEQVLHGAGTGGL 513 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + L EN +L E Sbjct: 514 GLSIV-----RRLLGENGGQLSMESGRGEG 538 >gi|85859323|ref|YP_461525.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85722414|gb|ABC77357.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 576 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 12/134 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72 + + + H+I +P+ AI S+ +L ++ +M++I +K F+ LA Sbjct: 345 MAAGLAHEIRNPLAAISGSIHMLKKDLKLDPTDERLMKIILRGKDQLENFMKDFLLLAKP 404 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDL---SRERAK-ILLNLFMV 125 G + + I++++E + + + + V + L ++ + ++ NL + Sbjct: 405 AAGEKEWMNLNALIDEILESLVYIPDWSENITVEKNYPEPSLLYANKREMQHVIWNLILN 464 Query: 126 AHASLPRGGKVTIS 139 A ++PRGG++ I Sbjct: 465 ALQAMPRGGRLHIR 478 >gi|220917252|ref|YP_002492556.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955106|gb|ACL65490.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 595 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 37/221 (16%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGY 73 + HD+ +P+ AI LL + D + IR ++ A ++ R G Sbjct: 376 VSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSAAERAARLIRDLLDLTRARLG- 434 Query: 74 TGSVDSLIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKIL 119 G + D+ QV + + W ++I A+++ Sbjct: 435 -GGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEASGDTHGQWDPDRI------AQVI 487 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176 NL A RG V + + E S+ G P + + + G Sbjct: 488 GNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGT--PIPAETVRTIFEAGGRAAPDP 545 Query: 177 DSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + R+ ++ + L + Sbjct: 546 TGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 586 >gi|197122378|ref|YP_002134329.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] gi|196172227|gb|ACG73200.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. K] Length = 747 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 77/191 (40%), Gaps = 22/191 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----K 65 L AL + + + H+I +P+ AI +++ LD + ++ + + RL + Sbjct: 477 RLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVN-RLNGVVTQ 535 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQV---SWTGEKIDLSRER 115 F+ + + + + +V+E R+++ W + + Sbjct: 536 FLDY----SRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQL 591 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++ LNL + A ++P GG++T+S + +++E F + +F G + Sbjct: 592 KQVFLNLALNAFQAMPHGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGIPDDA 651 Query: 176 IDSHDIQFYYV 186 +S + FY Sbjct: 652 RESIFVPFYTT 662 >gi|299138654|ref|ZP_07031832.1| integral membrane sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298599290|gb|EFI55450.1| integral membrane sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 447 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 11/197 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + +E+ DE+ ++++Q + + + R A G T + + Sbjct: 242 ISHDLQTPITRMKLRVEMADEIPEREKLLQDLTEIERLVHEGIAYARSAHGNTEAPSRID 301 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139 IE ++ D+ K V +S ++R A + L NL +L G + Sbjct: 302 IGSFIESLVFDYQDTGKAVTLSSKINATMVTRPHALRRTLTNLI---DNALKFGSSAEVR 358 Query: 140 VQDSK-NENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHEN 193 V+ + S+ G + T + +D + + L+ Sbjct: 359 VEKTNSEAITISVLDRGPGIPEDQLETVLQPFFRLDQSRNRDTGGAGLGLAIAHQLSLAI 418 Query: 194 KIRLLPEIIDDHNVVLS 210 L DD +V Sbjct: 419 SGTLTLRNRDDGGLVAE 435 >gi|255263006|ref|ZP_05342348.1| multi-sensor hybrid histidine kinase [Thalassiobium sp. R2A62] gi|255105341|gb|EET48015.1| multi-sensor hybrid histidine kinase [Thalassiobium sp. R2A62] Length = 770 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 23/194 (11%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78 HD + + AI +LL + G +D + I ++ A ++ + LAF Sbjct: 409 HDFNNLLTAISGHCDLLLLRHDQGDQDYSDLVQINQNANRAASLVRQL-LAFSRKQNLRP 467 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 ++ L D + + ++ ++ + + L R+ ++++NL + A ++P Sbjct: 468 EILDLRDTLADLTHLLNRLVGEKTTLTLSHDPSLLPIKVDKRQLEQVMMNLVVNARDAMP 527 Query: 132 RGGKVTISVQ----DSKNENIFSLKINGN--LARFPEKFTQIVDGNVESTIDSHDIQFYY 185 GG++ I + S E ++ G+ R + I + + FY Sbjct: 528 DGGEIRIETEAKNLKSPLERDRAIIPAGDYVTVRVLDDGVGISSEKLPKIFEP----FYT 583 Query: 186 VILLAHENKIRLLP 199 + + L Sbjct: 584 TKRTSEGAGLGLST 597 >gi|78223657|ref|YP_385404.1| histidine kinase [Geobacter metallireducens GS-15] gi|78194912|gb|ABB32679.1| histidine kinase [Geobacter metallireducens GS-15] Length = 367 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 18/222 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--- 65 + L AL L + + H+I +P+G+I + E+L + + RL Sbjct: 145 AERLSALGELSAMLAHEIRNPLGSIRGTAEILRDDFQPGHPKHEFLEILLKETDRLNRVV 204 Query: 66 --FMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDLSRER--AK 117 F+RL+ G + ++ +++ D A R+ + + Sbjct: 205 EDFLRLSRPGDGERKTCDLAAELRELVTLLGSDAAARGVRIGLEADEVPPVTGDPEKLRQ 264 Query: 118 ILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFP-EKFTQIVDGNV 172 LNL + + GG VT+ V + + + L A P E +I Sbjct: 265 AFLNLMLNGIQATGAGGTVTVRVKMFPRSGDDRPLVELAFADTGAGIPRESLERIFTPFF 324 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L Sbjct: 325 TTKEGGTGLGLAITQRIVEGHGGTVTVESEPGQGTTFRVRLP 366 >gi|86135912|ref|ZP_01054491.1| sensory box histidine kinase/response regulator hybrid [Roseobacter sp. MED193] gi|85826786|gb|EAQ46982.1| sensory box histidine kinase/response regulator hybrid [Roseobacter sp. MED193] Length = 691 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRL--SSMSAIIRLKFMRLAFGY-TGSVDS 79 HD + + I +LELL D+V +++ I S+ +L + L+FG + Sbjct: 338 HDFNNLLSIILGNLELLKDQVEPNSPILKYIDQALSATKRGAKLTYDLLSFGRRAQLLPQ 397 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----RAKI---LLNLFMVAHASLPR 132 ++ + + IED + +S D + + ++ +LNL + A ++P Sbjct: 398 VLKIDTVLNGIEDMLRRTLPANISLDFRYDDHVKPVLLDQGQLENAVLNLVLNARDAMPS 457 Query: 133 GGKVTISVQD 142 GG +T+SV + Sbjct: 458 GGNLTLSVSN 467 >gi|83944498|ref|ZP_00956951.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. EE-36] gi|83844700|gb|EAP82584.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. EE-36] Length = 761 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 19/136 (13%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL + G D + I ++ A L F R Sbjct: 400 HDFNNLLTAISGHCDLLLLRHDPGDRDYSDLVQIDQNANRAAALVGQLLAFSR----KQT 455 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + + D + + + V ++ + + I R+ ++L+NL + A Sbjct: 456 LRPETVNMRDTLADLTHLLNRLVGETVTLTLSHDPILQPIRADKRQLEQVLMNLIVNARD 515 Query: 129 SLPRGGKVTISVQDSK 144 ++P GG++ ++ ++++ Sbjct: 516 AMPMGGEIKVTTENTQ 531 >gi|83955441|ref|ZP_00964072.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. NAS-14.1] gi|83840085|gb|EAP79260.1| sensory box sensor histidine kianse/response regulator [Sulfitobacter sp. NAS-14.1] Length = 761 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 19/136 (13%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL + G D + I ++ A L F R Sbjct: 400 HDFNNLLTAISGHCDLLLLRHDPGDRDYSDLVQIDQNANRAAALVGQLLAFSR----KQT 455 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + + D + + + V ++ + + I R+ ++L+NL + A Sbjct: 456 LRPETVNMRDTLADLTHLLNRLVGETVTLTLSHDPILQPIRADKRQLEQVLMNLIVNARD 515 Query: 129 SLPRGGKVTISVQDSK 144 ++P GG++ ++ ++++ Sbjct: 516 AMPMGGEIKVTTENTQ 531 >gi|330967406|gb|EGH67666.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 403 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++D+ +Q+ I S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDDKTLQVAQHILTSGQRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +RV + ++L R + +I L + ++ Sbjct: 242 PLSIHDAHGLDKTLEHVVSEIQRVHPARLIRSNIGALELIRCDHERIAQLLSNLVSNAIT 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185 G ++ V + F L + PE + I + Y Sbjct: 302 HGAFDSSVEVAAGVLGDRFVLSVANQGEPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIAQAHGGTLDVSSTQEGGTVFTFSMP 390 >gi|332188326|ref|ZP_08390052.1| sensory box protein [Sphingomonas sp. S17] gi|332011639|gb|EGI53718.1| sensory box protein [Sphingomonas sp. S17] Length = 661 Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 74/224 (33%), Gaps = 42/224 (18%) Query: 24 HDIISPIGAIHNSLELLDEVGIE-DEVMQLIR---LSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + + L++L G+ + +LI S+ A ++ + LAF Sbjct: 308 HDFNNLLTPMVGGLDILSRSGVGTERQRRLIEGAIQSAERARALVQRL-LAF--ARQQPL 364 Query: 80 LIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS----RERAKI-LLNLFMVAHAS 129 + DI ++ + R+ + + S + ++ LLNL + A + Sbjct: 365 QLRAVDIGTLVRGMAELVGSTIGPRISLVIEMPEGLPSARADHNQVEMALLNLCVNARDA 424 Query: 130 LPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +P GG + IS ++N+ S +LA ++ ++ ++ Sbjct: 425 MPEGGTLRISASARHLSAENDEGLSAGSYISLAVSDTGI------GMDEETAKRAVEPFF 478 Query: 186 ---------------VILLAHENKIRLLPEIIDDHNVVLSALLE 214 LA + L D + LL Sbjct: 479 STKGLGKGTGLGLSMAHGLARQLGGTLTITTAPDAGTRVEILLP 522 >gi|218885805|ref|YP_002435126.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756759|gb|ACL07658.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 545 Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 30/240 (12%) Query: 1 MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQ 51 MA + N L + + AL + I H++ +PI + S E L E I+ + + Sbjct: 286 MAHELAVNQEHLLQARKMAALGTFTAGIAHELNNPINNVLLSAEGLREDYGEAIDADGQE 345 Query: 52 LIRLSSMSAI-------IRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98 +I A L F R +A + + + L + ++ I++ Sbjct: 346 MIGDIMQQAERASDIVRNLLDFSRTEHPTFVALHPADVIGATVNLLKNQVMLSG-ISLAV 404 Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNL 157 V + DL R ++ +NL + + PRGG V + F ++ +G Sbjct: 405 HVPADLPMVRGDL-RSLQQVFMNLLLNGIQATPRGGAVAVVAMGVPPGHVAFEVRDSGPG 463 Query: 158 ARFPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 PE+ + + ST + + L H ++ R+ + V + LL Sbjct: 464 --IPEEIREHIFEPFFSTKEVGKGTGLGLAVTYALVHRHEGRIEVHGGEGRGAVFTVLLP 521 >gi|330505346|ref|YP_004382215.1| sensory histidine kinase CreC [Pseudomonas mendocina NK-01] gi|328919632|gb|AEB60463.1| sensory histidine kinase CreC [Pseudomonas mendocina NK-01] Length = 473 Score = 40.7 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 71/213 (33%), Gaps = 38/213 (17%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM---------------- 67 H++ SP+ AI + ELLD + E Q + RL+ + Sbjct: 265 HELKSPLAAIRGAAELLD-GDMPTEQRQRFVANIQQESARLQNLIERLLHLAQVEQRQGL 323 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124 R+A VD L+ + I +S GE+ L + L NL Sbjct: 324 EERVAVPLVPLVDELLQAQQVRIAAAGLQIERTLPTGLSLRGERFLLR----QALANLLD 379 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIV---DGNVEST 175 A P GG++ I + + L G AR E+F + G + Sbjct: 380 NALDFTPPGGRICIVAERQGERIVLCLFNQGEAIPDYALARLTERFYSLPRPNGGRKSTG 439 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + + +Q +A + L ++D V Sbjct: 440 LGLNFVQ-----EVAELHGGELHIGNVEDGVEV 467 >gi|197122464|ref|YP_002134415.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172313|gb|ACG73286.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 618 Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 37/221 (16%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGY 73 + HD+ +P+ AI LL + D + IR ++ A ++ R G Sbjct: 399 VSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSAAERAARLIRDLLDLTRARLG- 457 Query: 74 TGSVDSLIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKIL 119 G + D+ QV + + W ++I A+++ Sbjct: 458 -GGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEAAGDTHGQWDPDRI------AQVI 510 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176 NL A RG V + + E S+ G P + + + G Sbjct: 511 GNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGT--PIPAETVRTIFEAGGRAAPDP 568 Query: 177 DSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + R+ ++ + L + Sbjct: 569 TGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 609 >gi|118443713|ref|YP_877290.1| sensory transduction histidine kinase [Clostridium novyi NT] gi|118134169|gb|ABK61213.1| sensory transduction histidine kinase [Clostridium novyi NT] Length = 553 Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDG 170 +I+LNL A P+GGK+ +++ D ++ +++ NG ++FTQ+ D Sbjct: 413 RIILNLLSNAVKFTPKGGKIKVNIHDDGDKLRITVRDNGIGIPEDKIHMIFDRFTQV-DK 471 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I Y V L + ++ E + L Sbjct: 472 SFTRSTEGSGIGLYLVKALVEMHNGKVSVESVYGKGSEFIIDLP 515 >gi|83312412|ref|YP_422676.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947253|dbj|BAE52117.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 782 Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 25/158 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRLAFGY 73 I HD + +G I +LELL + DE ++ R + L F R A Sbjct: 418 IAHDFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTV 477 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAK-ILLNLFMVA 126 G+ I + D + D + + ++ K ++R + LLNL + A Sbjct: 478 VGNDP--IDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINA 535 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++P GG + I + + + ARF Sbjct: 536 RDAMPDGGTLAIETSN--------IVVEAEHARFDPNL 565 >gi|299132907|ref|ZP_07026102.1| histidine kinase [Afipia sp. 1NLS2] gi|298593044|gb|EFI53244.1| histidine kinase [Afipia sp. 1NLS2] Length = 432 Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 15/158 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HDI + + I + L LL+ ++ ++ + R G I Sbjct: 104 IVHDINNLLAVISSGLRLLECQDDAEDRKAIVGKLQETITRSAFLTRRLLGDARPRAKPI 163 Query: 82 G-------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 L I ++ D +++ + + + + LLNL A ++P Sbjct: 164 DGYVDGRRLAAIASSLDRAFHPDITIRMEIAPDLWAFNADAEDLYFALLNLCRNAADAMP 223 Query: 132 RGGKVTISVQD-----SKNENIFSLKINGNLARFPEKF 164 GG +TI+ ++ + + + + PE+ Sbjct: 224 EGGIITIAARNVEHSAGATQGFVEIVVADDGMGMPEEV 261 >gi|261856579|ref|YP_003263862.1| integral membrane sensor signal transduction histidine kinase [Halothiobacillus neapolitanus c2] gi|261837048|gb|ACX96815.1| integral membrane sensor signal transduction histidine kinase [Halothiobacillus neapolitanus c2] Length = 476 Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 23/213 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-----TGS 76 + H++ SPI AI ++ELL + + ++L + + RL+ R+ G + Sbjct: 262 LAHELKSPIAAIRGAIELLPDETDSERRIRL-ETNIATETTRLQ--RIVDGVLNLARAEN 318 Query: 77 VDSLIGLGDIE--QVIEDFIA------VDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125 L DI +++D + +K + V T +S R + + NL Sbjct: 319 RGRLDERQDIAFDDLVQDVVNERADRLANKSLHVKTTLSPTKVSGSRFLLRQAVGNLLDN 378 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD-GNVESTIDSHDI 181 A PR G + I+V ++ +++ +G P F + +S S + Sbjct: 379 AIDFSPRNGVLEINVSQEDDQVQLTIRDHGPGIPDYAQPRLFERFYSTPRPDSGERSSGL 438 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A + + L Sbjct: 439 GLNLVQEVARLHGGHIELHNHPHGGAEACLNLP 471 >gi|254465485|ref|ZP_05078896.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] gi|206686393|gb|EDZ46875.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] Length = 654 Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 80/225 (35%), Gaps = 26/225 (11%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII- 62 S L A+ + + + H+I +P+ I +L+L +E +LI + Sbjct: 430 SEKLAAVGEITASVAHEINNPVAVIQGNLDLARTVLGRHAEPVEEEFRLIDDQVYRISVI 489 Query: 63 ---RLKFMRLA--FGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRE 114 L+F R G G + + D + I ++ TG+ E Sbjct: 490 VSKLLQFARPEEYSGAAGLISPAEVVADCLVLTRHQIEATGIEAEAHLASTGQVRISRTE 549 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 ++++NL + A ++P GG++T++ +D+ + + + + G +++ + Sbjct: 550 LQQVIVNLILNAVQAMPGGGRLTLTAEDTPDGVLLAAEDTGTGIP-----ADLLNRIFDP 604 Query: 175 TIDSHDIQFYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLE 214 + Q + L L R+ + L Sbjct: 605 FFTTKQAQGTGLGLSISHQLVSRAGGRITVQSEPGRGTRFEIFLP 649 >gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 778 Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 26/217 (11%) Query: 24 HDIISPIGAIHNSLELL--DEVGIEDEVMQL-----IRLSSMSA----IIRLKFMRLAFG 72 H++ +P+ AI E+L + G L IR S L R+ G Sbjct: 556 HELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSRIEAG 615 Query: 73 YTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFM 124 + +I + + A R++++ L E ++ L+NL Sbjct: 616 RATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLG 675 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-------VDGNVESTID 177 A P GG++ +S + +++ ++++ + + + +DG + + Sbjct: 676 NAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLARRYE 735 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L + ++ L Sbjct: 736 GTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLP 772 >gi|194337020|ref|YP_002018814.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309497|gb|ACF44197.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 650 Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 23/130 (17%) Query: 24 HDI---ISPI--GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 HD+ ++PI A +EL G ++EV + R S ++ +L + LAF S Sbjct: 296 HDLNNLLTPILGYAEMLEMELAGNAGQQEEVRAIQRAS--TSARKLIWQLLAF----SRT 349 Query: 79 SLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126 + LG++E +++ + RV+ + L ++ L+NL + A Sbjct: 350 QTLELGEVELNAMLKEFGEMLRQSVGSGVRVEFELAPSLLPLHANAGQLEQVLVNLALNA 409 Query: 127 HASLPRGGKV 136 ++P GG++ Sbjct: 410 RDAMPSGGRL 419 >gi|262196308|ref|YP_003267517.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079655|gb|ACY15624.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 540 Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 18/195 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75 H++ +P+ A+ +S+ELL I+D+ I S + +L+ R+A G Sbjct: 188 HELRNPLAALTSSVELLAHGAIDDQRRDWIHDSMARQLAQLRSLVDDLLDVTRIAQGKMV 247 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------KILLNLFMVAH 127 + + + + + ++ + + + R ++++NL A Sbjct: 248 LRKAPVDIASVVADALESVSSLVNARKHTLVCEPIVERLEVFGDRTRLEQVIVNLVANAA 307 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNL--ARFPEKFTQIVDGNVESTIDSHDIQFYY 185 GG++ +S + ++ G A E + E+ I Sbjct: 308 NYTEPGGRIELSARREGEHIRVAVVDTGVGIDAADIEHIFEPFAQVGEAGSGGLGIGLTL 367 Query: 186 VILLAHENKIRLLPE 200 V L + + E Sbjct: 368 VRQLVELHGGTVEAE 382 >gi|220916056|ref|YP_002491360.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953910|gb|ACL64294.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 530 Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 17/219 (7%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA-------IIR 63 +L + L S + HD+ +P+ AI + LL + G+ D + L A Sbjct: 289 ELRSGLLSSVSHDLRTPLAAITGAGTLLLDDGVNDPAIRRDLAATVVDEAERLERLVSNL 348 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117 L RL G + L ++ + + + +L + Sbjct: 349 LDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAARPVAVAIPDELPLLSVDPILVQQ 408 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + +NL A P G ++ + + G E+ + Sbjct: 409 LFVNLLENATKHTPPGSEIAVRAAREGGMVAIEVADRGPGLPEGEEERIFDRFQRAARPG 468 Query: 178 SHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + RL V L Sbjct: 469 VRGVGLGLPIARAIAQAHGGRLTAANRAGGGAVFRLTLP 507 >gi|304309785|ref|YP_003809383.1| Sensory histidine kinase in two-component regulatory system with OmpR [gamma proteobacterium HdN1] gi|301795518|emb|CBL43716.1| Sensory histidine kinase in two-component regulatory system with OmpR [gamma proteobacterium HdN1] Length = 430 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 10/149 (6%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTG 75 LL + I HD+ +P+ + + ELL E + ++R L +F +AF Sbjct: 214 LLLAGISHDLRTPLTRMRLTAELL-EASDPELTEGMVRD-IEDMDAILDQF--IAF-VRD 268 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL----LNLFMVAHASLP 131 D + +GD+ +VIE+ IA + V + L K L L ++ +A Sbjct: 269 GRDEQVDVGDLNEVIEEVIAQYESEDVILRSDLQALPPISLKRLSLKRLFANLIGNALRH 328 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF 160 GG+V IS + E + G Sbjct: 329 GGGEVDISSGVERGEIRLVVADRGPGLPV 357 >gi|284042187|ref|YP_003392527.1| integral membrane sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283946408|gb|ADB49152.1| integral membrane sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 463 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 12/170 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 + HD+ SP+ AI + E L + D + + R L RL G Sbjct: 243 VSHDLRSPLTAIATAGEALTSPNLTDAERAELAAAVTGESQRLSRLVDKLLDLSRLQGGA 302 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 + ++ +V D V + + + ++ + + G Sbjct: 303 ADPRREWCSVEEVLRVAIDETPHPAGFNVGIDRDLPLVRADAVQLERAFANLLENAARYG 362 Query: 134 GKVTISVQDSKNENIFSLKIN----GNLARFPEKFTQIVDGNVESTIDSH 179 G ++V+ + ++I G R E+ + E+ D H Sbjct: 363 GDHPVAVRARVVGHRLLIRIVDRGPGIHGRELERIFEPFHRAPETRNDGH 412 >gi|58038744|ref|YP_190708.1| sensory transduction protein kinase [Gluconobacter oxydans 621H] gi|58001158|gb|AAW60052.1| Sensory Transduction Protein Kinase [Gluconobacter oxydans 621H] Length = 667 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 23/186 (12%) Query: 22 ICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYTGSVD 78 I HD + + AI SLELL++ ++ + L+R ++ SA R L FG Sbjct: 299 IAHDFNNLLAAISGSLELLEDIAEFDEASLALLRNAADSAQRGAVLTRRLLQFGRPREAR 358 Query: 79 -SLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRERAK----ILLN 121 S + LG + + D + + + V + L A LLN Sbjct: 359 LSAVSLGQLLPGLTDLLRQSLKKRGVPASAAPCALCVEDVPPDLPLVWSDADQLEMALLN 418 Query: 122 LFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 L + A ++ GG V IS + ++ + A E + + + + Sbjct: 419 LCVNARDAMADGGTVRISAHVVEQKRTGLPVECCPDRAVALEVVDE--GEGMPPEVAARI 476 Query: 181 IQFYYV 186 ++ Sbjct: 477 FDPFFT 482 >gi|149923735|ref|ZP_01912129.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149815419|gb|EDM74959.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 686 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI-GLGDIEQVIEDFIAV--DKRVQVSW 104 E + LI ++ A + + LAF T S I + ++ + + DKRV+++ Sbjct: 342 ENLALILDTAEQAAELTRKL-LAFSRTNQRSSAILDVHEVVRGTVALLRHSVDKRVEITL 400 Query: 105 TGEKIDLS----RERAK-ILLNLFMVAHASLPRGGKVTISVQD 142 ++ LS R + + LLNL + A+ ++P GG + I+ + Sbjct: 401 DFDEGALSIQGDRAQVQNALLNLGINANQAMPEGGTLEIATRQ 443 >gi|189425993|ref|YP_001953170.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422252|gb|ACD96650.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 415 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 19/197 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS---AIIRLKFMRLA 70 L + + H++ +P+ I +LL E + +++ S L + R Sbjct: 203 LGAVLAHEVRTPLAGIKGFAQLLRERVQESREREYAGKIVAESERLEGLVTDLLTYTRQE 262 Query: 71 FGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDL-SRERAK-ILLNLFMVAH 127 GS L + D + + E+ + +Q++ + +R + +LLNLF A Sbjct: 263 TMQAGSAVVLELVQDAWDHLAEEALQAKVALQITGAVSRPVACPADRLRQLLLNLFTNAQ 322 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGN-------LARFPEKFTQIVDGNVESTIDSHD 180 ++P+GG + + + D + + +G F +T G+ H Sbjct: 323 QAMPQGGDLRVDLSDDGEQATILISDSGPGFAEESLKRAFDPFYTTRASGSGLGLAVCHK 382 Query: 181 IQFYY--VILLAHENKI 195 I Y + LA+ Sbjct: 383 IAAGYGGTVRLANARSG 399 >gi|322421490|ref|YP_004200713.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127877|gb|ADW15437.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 879 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 23/161 (14%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVM----QLIRLSSMSAI 61 + M+ V L + HD + + AI EL L +VG ++E +++ S +A Sbjct: 502 MHAQKMEAVGQLAGGVAHDFNNILSAIIGYSELTLRKVGADEEARHYVDEILAASHRAAT 561 Query: 62 IRLKFMR--LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKID 110 R LAF + + + D+ +V+ F + R V + Sbjct: 562 ----LTRSLLAF--SRKQPVSLAVIDLNEVVGGFQSFLSRLIKEDIELKVACGTERLPVL 615 Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 R + ++L+NL A ++PRGG + ++ + F Sbjct: 616 ADRGQVEQVLMNLVANARDAMPRGGSLVVTTRRMTLGRDFV 656 >gi|163746277|ref|ZP_02153635.1| sensor kinase-like protein, putative [Oceanibulbus indolifex HEL-45] gi|161380162|gb|EDQ04573.1| sensor kinase-like protein, putative [Oceanibulbus indolifex HEL-45] Length = 525 Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 60/153 (39%), Gaps = 20/153 (13%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 163 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 218 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + + D + + ++V ++ + + + R+ ++L+NL + A Sbjct: 219 LRPETLDMRDTLADLTHLLNRLVGEKVTLTLSHDPVLAPIRADKRQLEQVLMNLVVNARD 278 Query: 129 SLPRGGKVTISVQDSK-NENIFSLKINGNLARF 160 ++P GG++ I + + + + +++ RF Sbjct: 279 AMPAGGEIRIVTEVTTLDHPLERDRVSVPAGRF 311 >gi|327537523|gb|EGF24242.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1347 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 16/153 (10%) Query: 22 ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+GA+ N++ ++ + + + +++ L R+ G Sbjct: 982 LSHELRNPLGAVTNAIAIMSSEETKPDVTERALGVVKRQLGQMSRLLDDLLDVSRITHGK 1041 Query: 74 TGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 L + + A ++++ L ++ +NL Sbjct: 1042 IELRKQQTDLTKMIEQAVIATQSRADGADLELTVALPSTPLIVDGDPARLEQVTMNLLTN 1101 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GGK+ + ++D ++ NG Sbjct: 1102 AVKYTPPGGKIRLELKDDGQNAYLKVQDNGAGI 1134 >gi|107099449|ref|ZP_01363367.1| hypothetical protein PaerPA_01000461 [Pseudomonas aeruginosa PACS2] gi|218889204|ref|YP_002438068.1| sensory histidine kinase CreC [Pseudomonas aeruginosa LESB58] gi|254237306|ref|ZP_04930629.1| two-component sensor CreC [Pseudomonas aeruginosa C3719] gi|126169237|gb|EAZ54748.1| two-component sensor CreC [Pseudomonas aeruginosa C3719] gi|218769427|emb|CAW25187.1| two-component sensor CreC [Pseudomonas aeruginosa LESB58] Length = 474 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 24/203 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78 H++ SP+ AI + ELLD ++ + + + + RL+ + LA Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVGNIAGESE-RLQQLIERLLSLAQVEQRQGL 323 Query: 79 SLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128 +G D+ ++ + R++V E R + L NL A Sbjct: 324 EEVGKVDLREIAASLLEGQAARIQRQRLRVENRLEGPCEVRGEQFLLRQALANLLDNALD 383 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182 P GG + + + L G AR E+F + + Sbjct: 384 FTPPGGILRLLAEVDGEGIALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443 Query: 183 FYYVILLAHENKIRLLPEIIDDH 205 F V +A + RL DD Sbjct: 444 F--VAEVAQLHGGRLQVGNRDDG 464 >gi|167033383|ref|YP_001668614.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859871|gb|ABY98278.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 551 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 73/181 (40%), Gaps = 19/181 (10%) Query: 22 ICHDIISPIGAIHNSLEL----LDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFG-YT 74 I HD + +G++ +LEL L E D ++L R +++ A +++ + LAF Sbjct: 181 IAHDFNNLLGSLLGALELAEQRLREQRHADTARMLELCRNTTIRAATQVQRL-LAFSRQQ 239 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 + I + + ++D IA + W ++ LLNL + Sbjct: 240 TLIPQPIDVQCLVAGMQDLIASSTGPHIDFHDQTLAGLWQIRID--PQQLENALLNLCIN 297 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A ++P GG ++IS +S + +++ R+ + + + ++ ++ Sbjct: 298 ARDAMPLGGILSISCANSDLAVAEAGQLDLPAGRYLHIRVTDTGMGMSNEVMQRALEPFF 357 Query: 186 V 186 Sbjct: 358 T 358 >gi|146306183|ref|YP_001186648.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145574384|gb|ABP83916.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 479 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 76/213 (35%), Gaps = 28/213 (13%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + L S I HD+ +PI + +ELLD+ ++ + + + A+ +K Sbjct: 279 SQLFSAISHDLRTPITRLRLRVELLDDEALQAKFSRDLDELEVLVKGALQCVK------- 331 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + I D+ ++ I RV V + A + + NL Sbjct: 332 -DTDIHENIEPVDLNHLLHGLIEPYLGTGRVTVDGAARYPYPGKPLALRRCIGNLL---D 387 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 +L G + + ++D + + G +K Q+ + + + Q Y + Sbjct: 388 NALKYGERAHLHIEDDAEAFVLHVDDEGPGV-PEQKLEQVFEPHFR---LASQQQGYGMG 443 Query: 188 L-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L LAH + L + + + ++ L + Sbjct: 444 LGIARNLAHSHGGELSLRNLREGGLRVTLWLPR 476 >gi|86357748|ref|YP_469640.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86281850|gb|ABC90913.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 583 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 13/146 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + I A R + + + GS Sbjct: 375 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 433 Query: 81 IGLG-DIEQVIEDF-------IAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 D+ ++ + R+++ +S + A + +LNL + A A+ Sbjct: 434 YPSPVDVASLLRGMADILEIAVGTKCRIKLELDARLPVVSLDAALLEQSVLNLCLNASAA 493 Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155 +P GG + I ++ + S+ +G Sbjct: 494 MPMGGVIVIGATADQDALLISVTDSG 519 >gi|77464081|ref|YP_353585.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77388499|gb|ABA79684.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 945 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 19/199 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L S + HD+ + + AI S L+ E G + Q I ++ A ++ L G Sbjct: 541 LASGLAHDLNNLLAAIGGSALLIQEMQSGAAEVHAQRILAATEQAGALVRRF-LTLGKRQ 599 Query: 76 SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128 S S I L + +++ + R+ ++ I + + +++LNL + A Sbjct: 600 SNRSRIDLCPLLQEAADLVQAGLRNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARD 659 Query: 129 SL----PR--GGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 ++ PR G ++++++ + + G R+ +E + + Sbjct: 660 AISTAPPREGGHEISVTLAPAGPAQLVQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQAK 719 Query: 180 DIQFYYVILLAHENKIRLL 198 Q Y+ A + L Sbjct: 720 VFQPYFSTKGAAGTGLGLA 738 >gi|332185367|ref|ZP_08387115.1| sensory box protein [Sphingomonas sp. S17] gi|332014345|gb|EGI56402.1| sensory box protein [Sphingomonas sp. S17] Length = 832 Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 24/181 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAI-IRLKFMRL-AFGYTGSVDSL 80 HD + + I +L+LL + G+ Q L+ ++ SA R RL AF Sbjct: 470 HDFNNLLTPIVGTLDLLQQKGLGGAREQRLVAGAAQSAERARTLVQRLLAF--ARRQPLQ 527 Query: 81 ---IGLGDIEQVIEDFIAVDKRVQV------SWTGEKIDLSRERAKI-LLNLFMVAHASL 130 + + + ++D +A Q+ + D + ++ LLNL + A ++ Sbjct: 528 LISVDMAALVAGMQDLVASTTGPQILVEINVAPDLPPADADPNQVEMALLNLAVNARDAM 587 Query: 131 PRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 P GG + I+ + + +L G R G T+ + ++ + Sbjct: 588 PGGGTLRITLAAEHLAEGRLIGSHGALLPAGRYVRLS--VADTGSGMHAETL-ARAVEPF 644 Query: 185 Y 185 + Sbjct: 645 F 645 >gi|315185572|gb|EFU19341.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6578] Length = 678 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 28/211 (13%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQL--IRLSSMSAIIR 63 L S + AL L + + H+I +P+GAI + L LL + L I Sbjct: 456 LISERISALGALSAGLAHEINNPLGAISSHLAYLLSVEDDPERRESLLWIEKEITRIGNL 515 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQV----SWTGEKIDLSR 113 +K + + + G D+++ + D I A KR+ + + +S Sbjct: 516 VKTI-----LSHARGRTEGPCDVDRTLRDTIGLLSPQARQKRIALSYTSTGPLPSALISE 570 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD 169 K + LN+ A S+ GG + + + + + + G P F + Sbjct: 571 AELKQVALNILKNAMESIGEGGSIQVEARSVDDGLVIAFHDTGPGFPEPSEAHLFDPLFT 630 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPE 200 E T I + R+ Sbjct: 631 TKAEGTGLGMTI----THHIIQRAGGRIAVR 657 >gi|86747162|ref|YP_483658.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570190|gb|ABD04747.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 921 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD+ + + + +E+L E + ++ + L A+ R L F R Sbjct: 546 HDLNNILTVLTGGIEILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQPLQPR 605 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLFMVAHASL 130 S+D + + +++ + ++V + + + L+NL + A ++ Sbjct: 606 SIDVNALMQETARLLRS--TLGGDIEVEFEPAPGLRPALADSSQLSSALINLAINARDAM 663 Query: 131 PRGGKVTISVQDSKNENIFSLK 152 PRGG + ++ ++ + ++ + Sbjct: 664 PRGGTLRLAAGNADLDQRYADQ 685 >gi|322436994|ref|YP_004219206.1| response regulator receiver sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164721|gb|ADW70426.1| response regulator receiver sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 519 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 19/178 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSM 58 + S L A L + I H+I +P+ AI N + L+D G E + + + Sbjct: 281 IQSEKLAAAGRLSAAIAHEINNPLEAITNLMYLIDTSEEITPTLKGYVQEALSELSRLTH 340 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLS--RER 115 A L F R G D + D + ++ F A V+ + + LS + Sbjct: 341 IARQSLGFYRELTGAA-LFDLNESVDDTLNIYLKRFDAKHIHVERHYHPGPLQLSAVKGE 399 Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS----LKINGNLARFPEKFTQIV 168 + ++ NL + A+ +LP G +T+S S + + L++ N + P + Sbjct: 400 VRQVVSNLLVNAYDALPTNGCLTVSTDTSTDAEGLTDLVILRVTDNGSGIPPNVVAHI 457 >gi|308270674|emb|CBX27285.1| hypothetical protein N47_I07050 [uncultured Desulfobacterium sp.] Length = 1252 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNV 172 ++++NL + A ++P GGK+TI ++ ++ ++ ++A P + + + Sbjct: 997 QVIMNLVVNARDAMPYGGKITIETENVNIDDGYAHT---HVAVIPGPYVMLSISDTGVGM 1053 Query: 173 ESTIDSHDIQFYYV 186 I +H + ++ Sbjct: 1054 PDEIKAHIFEPFFT 1067 >gi|260892433|ref|YP_003238530.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260864574|gb|ACX51680.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 611 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 15/214 (7%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRL 69 L +L L + + H+I +P+ AI+ L+L + G ++ + +R ++ + Sbjct: 387 RLASLGRLVAGVAHEIRNPLTAINCYLQLWQKSGRFPEKPLNTMREEINRLDNLVEKL-- 444 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT---GEKIDLSRERAKILLN 121 + ++ +++ D + R++ + E + ++L N Sbjct: 445 -LCLAKPAEVKKVPYEVNRLVRDSLRFFEEVVGIRIETDFASDLPEVPLDPEQMGRVLQN 503 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL-ARFPEKFTQIVDGNVESTIDSHD 180 LF A ++ GG +T+ + + +++ PE +I + + Sbjct: 504 LFFNACEAMAGGGVLTVRTYKAGDGRHAVIEVADTGCGIPPEHLKEIFEPFFTTKPQGTG 563 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E + L Sbjct: 564 LGLSLAKEVVEAHGGRIEVESELGKGTTMRIYLP 597 >gi|260428142|ref|ZP_05782121.1| sensor histidine kinase [Citreicella sp. SE45] gi|260422634|gb|EEX15885.1| sensor histidine kinase [Citreicella sp. SE45] Length = 426 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 19/174 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ++ S + HD+ +PI + L +L++ E + L F R Sbjct: 222 TMMLSGVSHDLRTPITRLKLGLSMLEDEEREPLERD-VEDMQRLIDAFLDFAR-----GD 275 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHA 128 + D +++E +A +R GE + L NL Sbjct: 276 TQGGEAEPTDPIELVEGIVADARRAGKDVTVASTEGAGEVTLRPAAMRRALENLI---GN 332 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 ++ G + +SV ++ ++ +G PE+ + +D Q Sbjct: 333 AVRYGTRCEVSVALTEKSLRLRVEDDGPGI-APERREDAL--RPFVRLDPARNQ 383 >gi|224588314|gb|ACN58938.1| putative two component fused sensor/regulator transcriptional regulator [uncultured bacterium BLR7] Length = 642 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 32/219 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMR--LAFGYTGSVDSL 80 HD + + AI SL LL + ED M +L+ ++ A + + LAF + Sbjct: 289 HDFNNLLMAILGSLSLLRKRLPEDNQMLRLLDNATAGANRGVALTQRMLAF--ARRQEID 346 Query: 81 IGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHASL 130 + ++ ++ + R + + ++ + ++ +LN+ + A ++ Sbjct: 347 LVPLELPALVRGMTELLDRSVSAQAAIETRFPLSLSRVVADANQLELAVLNICVNARDAM 406 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV---- 186 P GG + IS ++ + + + R+ + +H + ++ Sbjct: 407 PDGGTILISAREQQVGPGHATNL--PEGRYVCLAVSDTGEGMSEETLAHATEPFFTTKGV 464 Query: 187 -----------ILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + RL+ + L Sbjct: 465 GKGTGLGLSMVHGMAEQMGGRLMLKSTKGEGTTAEIWLP 503 >gi|146282050|ref|YP_001172203.1| sensor/response regulator hybrid [Pseudomonas stutzeri A1501] gi|145570255|gb|ABP79361.1| probable sensor/response regulator hybrid [Pseudomonas stutzeri A1501] Length = 763 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 27/218 (12%) Query: 22 ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI-------RLSSMSAIIRLKFMR---L 69 I HD + + I S ELL + LI R + L F R L Sbjct: 391 IAHDFNNLLAVIGGSFELLRKRLPPSDPRTESLIENGLQATRRGAGLVQRLLSFARKQEL 450 Query: 70 AFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAH 127 D +IG+ ++ ++ +E I++D R + + + + +++L NL + A Sbjct: 451 RPSAVALPDLVIGMRELLKRSVETNISIDLRFPLD--LPQAYVDANQLEMVLINLVVNAR 508 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---------PEKFTQIVDG--NVESTI 176 ++P GG + I Q + G + PE + D + Sbjct: 509 DAMPDGGSICIEGQSRTAAEAGRIDAPGYVILIVRDDGIGMEPEVLARATDPFFTTKGPG 568 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + LA ++ RL + L Sbjct: 569 NGTGLGLSMAHGLAEQSGGRLQIHSRPGKGTTVEIWLP 606 >gi|322419782|ref|YP_004199005.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126169|gb|ADW13729.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 660 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Query: 37 LELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS-LIGLGDIEQVIEDFIA 95 ++L +E D+VMQ I ++ A + + LAF G V + L +I + +E F+ Sbjct: 320 MDLSEENPARDKVMQ-ISAAADRAANLTRSL-LAFSRKGEVKAAPANLNEIVKGVEKFLQ 377 Query: 96 V--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + ++ + + L S + ++L+NL A ++P+GG++ + + + Sbjct: 378 RIIGEDIDLTTSLAEGALWAVVDSGQIEQVLMNLAANARDAMPKGGRLFVQTERHDIDAA 437 Query: 149 FS 150 F Sbjct: 438 FV 439 >gi|86156451|ref|YP_463236.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85772962|gb|ABC79799.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 469 Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 25/217 (11%) Query: 19 CSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMS----AIIRLKFMRL 69 R+ HDI++PI + ++EL E E ++ R S L F R Sbjct: 238 AGRVAHDIMNPIASAQMAIELELRDQEAEGAPAGERLERARRSLRRIQTLVAGLLGFAR- 296 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G+ ++ +V++D + A D + + ++ + ++ + Sbjct: 297 ----AGARPETGATAELAEVVQDVLSGAEARATDAGMTLVAEVAPATVACAKGVLISLVA 352 Query: 124 MVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178 + ++ RGG+V + + + + ++ +G ++ + + Sbjct: 353 NLVENAVKYARRGGRVVVRTRANDDAVRVEVEDDGPGLPPDLGDRVFEPYVRGGARDVPG 412 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V LA + R+ L + Sbjct: 413 LGLGLATVKRLAEAHGGRVGVRSEPGRGATFWFELPR 449 >gi|300864199|ref|ZP_07109084.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337811|emb|CBN54230.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 365 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 21/166 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMS----AIIRLKFMRLA 70 + S I HD SP I S E+L ++ ++E +LI+L A L+F R Sbjct: 153 MVSTIIHDFKSPFTGIQLSSEMLQDLHPDEETAEWCELIQLQVQRMLGMADEVLEFSR-- 210 Query: 71 FGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123 G + L E++ + V + + + + ++L NL Sbjct: 211 -GNAVLHKKTVNLSHTLQQFEKLNRVYFDSTH-VDLVVQTADVIIEADENKILRVLQNLV 268 Query: 124 MVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 A + +GGKV I ++ + + NG PE + + Sbjct: 269 GNAVEAFDGKGGKVEIVLETDEKWAKIIISDNGPG--IPESIREHL 312 >gi|159900038|ref|YP_001546285.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893077|gb|ABX06157.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1022 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 34/172 (19%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAI--HNSLELLDEVGIEDEVMQLIRLSSM---SAI 61 L + L AL L S I HD + I I H L L++ + E + +I ++ + Sbjct: 653 LQTERLRALGELSSGIAHDFNNLIAGILGHTQLLLIEAPEEQREGLAVIEQAARDGRHMV 712 Query: 62 IRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------- 111 R++ F R + D+ +I D I + ++ W Sbjct: 713 ERIQQFTR------AQQPEDHEMVDLNTIINDVIKL---IRPRWRSRPASTMIQTRIEKG 763 Query: 112 --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++L N+ + A ++P+GG +TI + + + I + G Sbjct: 764 QIPLIYGSPFALREVLTNVVLNATDAMPKGGILTIRTEQVEADVIMEVSDTG 815 >gi|152987097|ref|YP_001349505.1| sensor histidine kinase/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150962255|gb|ABR84280.1| sensor histidine kinase/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 571 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIRL-KFMRLAFGYT 74 I HD + + I SLEL+ +D +LI + + + RL F R Sbjct: 217 IAHDFNNLLTPIMASLELIRRRLDDDRSGELIDGALQAAERARNLVGRLLTFAR----RQ 272 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKI-LLNLFMVAH 127 L ++ + + D I R++VS + + + ++ ++ +LNL + A Sbjct: 273 TLKPQATALHELVEGMRDLIERSLGPSIAVRIEVSASLPAVVVDPQQLELAILNLAVNAR 332 Query: 128 ASLPRGGKVTISVQDSKNENIFSL-KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 +L GG++ I + + G R + + + ++ ++ Sbjct: 333 DALGEGGRLEIGARTDQVVGGTVDGLAAGRYVRLD---VADNGAGMPGEVLARCMEPFF 388 >gi|327480298|gb|AEA83608.1| sensor/response regulator hybrid [Pseudomonas stutzeri DSM 4166] Length = 763 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 27/218 (12%) Query: 22 ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI-------RLSSMSAIIRLKFMR---L 69 I HD + + I S ELL + LI R + L F R L Sbjct: 391 IAHDFNNLLAVIGGSFELLRKRLPPSDPRTESLIENGLQATRRGAGLVQRLLSFARKQEL 450 Query: 70 AFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAH 127 D +IG+ ++ ++ +E I++D R + + + + +++L NL + A Sbjct: 451 RPSAVALPDLVIGMRELLKRSVETNISIDLRFPLD--LPQAYVDANQLEMVLINLVVNAR 508 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---------PEKFTQIVDG--NVESTI 176 ++P GG + I Q + G + PE + D + Sbjct: 509 DAMPDGGSICIEGQSRTAAEAGRIDAPGYVILIVRDDGIGMEPEVLARATDPFFTTKGPG 568 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + LA ++ RL + L Sbjct: 569 NGTGLGLSMAHGLAEQSGGRLQIHSRPGKGTTVEIWLP 606 >gi|323699710|ref|ZP_08111622.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459642|gb|EGB15507.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 320 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 22/160 (13%) Query: 23 CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRLAFGYTG 75 CH++ SP+ I N+ ELL + E +LI+L+ ++A L+F R Sbjct: 106 CHELKSPLIGIVNAFELLRMTEDQGEREELIQLAGVAARKLGILVDGVLEFSRQE--SMA 163 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAK--------ILLNLFMVA 126 ++ ++ + D + R + ++ T E D + + + LNL A Sbjct: 164 PAPTVFSPAELLASVRDMSLLQVRSRGLALTTETADGTPPLVRGGESVLRLVALNLVGNA 223 Query: 127 HASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163 RGG + + + + + ++ G R + Sbjct: 224 VRYTDRGG-IRVELGSRDNPAEALVLTVSDTGRGIRAEDL 262 >gi|218437672|ref|YP_002376001.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170400|gb|ACK69133.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1021 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 23/143 (16%) Query: 18 LCSRICHDI---ISPIGAIHNSLELLDE--VGIED---EVMQLIRLSSMSAIIRL-KFMR 68 L S I HD+ + PI I + LL + +++ E + L+ SS + + + Sbjct: 656 LASGIAHDLNNILQPILFIAH---LLRQKFPHLDEQTRERLALLEDSSKRGTSLVRQILS 712 Query: 69 LAFGYTGS---VDSLIGLGDIEQVIEDFIAVD-----KRVQVS-WTGEKIDLSRERAKIL 119 A G GS V L ++ QV + KR + WT + Sbjct: 713 FACGEEGSRVNVQVKHILREVIQVAQKTFPKSIKIQMKRPTLDLWTVYADATQLHQV--F 770 Query: 120 LNLFMVAHASLPRGGKVTISVQD 142 +NL + A ++P GG +TIS+++ Sbjct: 771 MNLMVNARDAMPEGGMLTISIEN 793 >gi|156742867|ref|YP_001432996.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234195|gb|ABU58978.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 576 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 21/175 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMR 68 ALL + HD+ +P+ A+ LELL + + LI + + L +R Sbjct: 351 ALLAQMVIHDLKNPLTALIGFLELLSAADLSESQRSLIDSALRNGRDLAGLVDDLLDLIR 410 Query: 69 LAFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILL 120 G + L + + ++ + + + + L R A +ILL Sbjct: 411 YNEGRLRLRLGDVSLPVLCAECADELAGWLLYESKTLILDVSPTLPLIRADARILKRILL 470 Query: 121 NLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKFTQIVDG 170 NL A PRG +T+ V D + + + G PE+ ++ + Sbjct: 471 NLLSNAIKHTPRGTLITLRVWREPHPDRGEQTVIEVADTGPGI-PPERIERLFEP 524 >gi|15605839|ref|NP_213216.1| histidine kinase sensor protein [Aquifex aeolicus VF5] gi|2982998|gb|AAC06610.1| histidine kinase sensor protein [Aquifex aeolicus VF5] Length = 310 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 81/212 (38%), Gaps = 25/212 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---------RLSSMSAIIRLKFMRLAFG 72 + H++ +P+ + N+LE L ++ E +LI +S + L F + Sbjct: 104 LSHELKTPLAVVMNTLETLLDMEEESVKRELIGRALKRVKEAISLTETVYMLSFSK---- 159 Query: 73 YTGSVDSLIGLGDIE-QVIEDFIA--VDKRVQVSWTGEKIDL--SRERAKILL-NLFMVA 126 G V + L ++ +V++D +K + V ++ L +RE K+++ NL A Sbjct: 160 GKGKVREEVNLEEVLSEVLKDLEENIKEKEISVEIDLKEKCLKGNREEIKVIIRNLLQNA 219 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQF 183 RGGKV + + +N + S++ G + P V G + + Sbjct: 220 VEYNKRGGKVLVETRKDENAIVLSVEDTGIGIENRKIPLILEPFVKGEESKGL---GLGL 276 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V +A ++ + + + Sbjct: 277 ALVKKIAQNYGAKINIQSERGKGTKVEIRFPE 308 >gi|325262999|ref|ZP_08129735.1| sensor histidine kinase KdpD [Clostridium sp. D5] gi|324032093|gb|EGB93372.1| sensor histidine kinase KdpD [Clostridium sp. D5] Length = 892 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 37/214 (17%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIE------------D 47 + I L L A L I HD+ +P+ +I + E L++E +E D Sbjct: 654 QQEIDMKLQKEQLRANLLRSISHDLRTPLTSISGNAETLLINEGKVEKEQRKKIYKDIYD 713 Query: 48 EVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + M LI L L R+ G ++ I IE+ + K ++ Sbjct: 714 DSMWLINL----VENLLSVTRIENGTMELNLQGEIVEDVIEEALHHVNRRGKEQKIHVEC 769 Query: 107 EKIDLSRERAKILLN-LFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +++ +++ K++L L + ++ P G + I + + + S+ NG + Sbjct: 770 DELLMAKMDVKLMLQVLINLTDNAVKYTPAGSDIRIKAEKQGDRAVISVTDNGLGIPAEQ 829 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIR 196 K S Q +Y A + R Sbjct: 830 K--------------SRLFQMFYTAGHAVSDGRR 849 >gi|295694964|ref|YP_003588202.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus tusciae DSM 2912] gi|295410566|gb|ADG05058.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bacillus tusciae DSM 2912] Length = 752 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 4/100 (4%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++L+NL A ++PRGG++ + + + I I+ + + ++ G T Sbjct: 623 QVLVNLLKNAIEAMPRGGQIVVQARQEDDRTILIRVIDEGMGIPEDSLPRL--GEPFFTT 680 Query: 177 DSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ E + LL Sbjct: 681 KEKGVGLGLTMSYQIIESHGGQMHFESEVGAGTTVEILLP 720 >gi|239944802|ref|ZP_04696739.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239991267|ref|ZP_04711931.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] gi|291448266|ref|ZP_06587656.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|291351213|gb|EFE78117.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] Length = 560 Score = 40.3 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 5/115 (4%) Query: 106 GEKIDLSRERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ R ++ NL A + GG++ + ++ I ++ +G + Sbjct: 420 PDRVVDPRGLVTVVGNLVDNATDAAAGSDGGRIEVGLRTEGRTVILEVRDSGPGVPQEQH 479 Query: 164 FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +G + +H + V LA + D V + +L + Sbjct: 480 ASIFTEGWSTKDVPAHGKRGLGLALVRRLAERQGGSVTVSGADGGGAVFTVVLPE 534 >gi|163857757|ref|YP_001632055.1| two-component hybrid sensor and regulator [Bordetella petrii DSM 12804] gi|163261485|emb|CAP43787.1| two-component hybrid sensor and regulator [Bordetella petrii] Length = 533 Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 17/175 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFG 72 LL + HD + + I S ELL + G+ D + I +S A R Sbjct: 170 LLTGGVAHDFNNLLMVIRGSAELLRQPGLSDSKRQQYIDAISSTSDRAA---HLTRQLLA 226 Query: 73 YTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKID----LSRERAK-ILLNL 122 Y D+ IE +++++ + R + + +LN+ Sbjct: 227 YARKQPLRPATFDVRSCIEGMQDLFHATTGSSIEIAYDLAPTPCYVHVDRNQLETCILNI 286 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + A ++P GG +TI+V + G ID Sbjct: 287 IINARDAMPAGGTLTITVSAVDTVPATRHHGPAHRPHVAITIADTGLGIAPEVID 341 >gi|253699164|ref|YP_003020353.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774014|gb|ACT16595.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 689 Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 66/178 (37%), Gaps = 14/178 (7%) Query: 22 ICHD----IISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-S 76 I HD + IG + +L + E + + ++ A + + LAF S Sbjct: 464 IAHDFNNLLTGMIGYVSLALMTMKEEDPAANYLDRVVSAADRAADLTQRL-LAFSRKQIS 522 Query: 77 VDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS----RERA-KILLNLFMVAHAS 129 + L I + ++ ++++ + L + ++++NL A + Sbjct: 523 HPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPREGMLPVVADSSQVDQVVMNLVTNARDA 582 Query: 130 LPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +P GG +TI+ + + + G++ + ++ +H ++ ++ Sbjct: 583 MPAGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDTGTGMDEATRAHVLEPFFT 640 >gi|91775008|ref|YP_544764.1| histidine kinase [Methylobacillus flagellatus KT] gi|91708995|gb|ABE48923.1| histidine kinase [Methylobacillus flagellatus KT] Length = 442 Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 7/151 (4%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 LL + I HD+ +P+ + S+E+L + +I+ I +F+ G G Sbjct: 217 TLLLAGISHDLRTPLARLRLSVEMLPDEYCASLKAGMIQDIGDMDSIIHQFLDFVRGIEG 276 Query: 76 SVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132 ++ L + V + +++ +S + R A ++L NL + Sbjct: 277 EPTQMMDLNALLTSVADRHTRAGRKLTMSLAPTHLIPLRPLAMQRLLTNLI---DNAFAY 333 Query: 133 -GGKVTISVQDSKNENIFSLKINGNLARFPE 162 GG+VT++ + + I S+ NG + Sbjct: 334 GGGEVTVTTRITAGNIILSVLDNGPGIPAAQ 364 >gi|320353834|ref|YP_004195173.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320122336|gb|ADW17882.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 704 Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK---- 65 L +L L + I H+I +P+ +I+ +++LL + D + LI + R++ Sbjct: 470 RLTSLGQLSAGIAHEIRNPLASIYFNVQLLAKKLPAADPTLALINDTQKGIN-RIRALVK 528 Query: 66 ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERA 116 F + + S L + +++ + R++V+ EK + Sbjct: 529 GMLDFAKPSLPSLKSGSLERVLRESIGLMDSQLKKQ-RIEVALQVEKDLPPVVFDAHQIQ 587 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 ++++NL + A ++P GG+V + +D + + Sbjct: 588 QVVVNLLLNAMEAMPGGGRVDLVARDERGTDR 619 >gi|213022037|ref|ZP_03336484.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 150 Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 46 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 105 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 106 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 143 >gi|154245239|ref|YP_001416197.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159324|gb|ABS66540.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 690 Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 70/181 (38%), Gaps = 23/181 (12%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS---- 59 S L A+ + + + H+I +P+ I +L++ + LI Sbjct: 453 SEKLAAIGEITAGVAHEINNPVAVIQGNLDVARDVLGPAAAPVRTEFNLIDQQVHRITII 512 Query: 60 AIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116 L+F R A + G ++ + +GD +++ + + V + R Sbjct: 513 VSKLLQFARPA-EFAGHLEPVAPSEVIGDALVLVQYLLGRGEIAVVRDESATRLVLMNRV 571 Query: 117 ---KILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++L+NL + A ++P+GG +T+ + + + ++ G PE ++ D Sbjct: 572 ELQQVLINLMVNAAHAMPQGGTLTLRTRDTAHNGRAGVSIAVADTGPGI-APEHVARVFD 630 Query: 170 G 170 Sbjct: 631 P 631 >gi|86157876|ref|YP_464661.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774387|gb|ABC81224.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 471 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 14/211 (6%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMR 68 L+ S+I H++ +P+GAI +++ + + ++++ L F R Sbjct: 249 ELMSSQISHELKNPLGAIKALVQISARGASDGDTCERLKVVSSEVERMREILDGYLSFSR 308 Query: 69 LAFGYTG---SVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNLFM 124 SV L ++ V++ A + R + LLNL Sbjct: 309 PLECLQREELSVGELAD--EVLSVLQGRAAAGGVGLHRRGDARIDADPRRLKEALLNLVA 366 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A + RG +V + V D +++ G P ++ + + Sbjct: 367 NAVEASRRGDRVEVLVSDRGGAVEVAVRDTGRGM-PPAVVARLGTPFFTTREQGTGLGVL 425 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ L D + L + Sbjct: 426 LARRAFVQHGGTLEYASAPDAGTTATGTLPR 456 >gi|194292018|ref|YP_002007925.1| sensor signal transduction histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193225922|emb|CAQ71869.1| putative sensor signal transduction histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 436 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 18/166 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + ++L++ + ++ Q +R + + R G T + + Sbjct: 238 ISHDLQTPITRMRLRVDLMEASPTQQKLYQDLREMEHLVREGVAYARTLQGGTETPARID 297 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139 ++ + D++ + + L+R +A +IL NL +L G +VT++ Sbjct: 298 PDALLDSLAGDYLDAGHTIAIEGQAGAPLLTRPQALRRILTNLI---DNALKFGAEVTLA 354 Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 V +++ + + PE + +Q YY Sbjct: 355 VA-RQDDGWLQIAVQDRGPGIPEAELE------------RVMQPYY 387 >gi|46200789|ref|ZP_00056503.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 444 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 10/146 (6%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVDSL 80 I HD+ SPI + ELL E D++++ + L F R G Sbjct: 244 ISHDLRSPITRLRLRTELLPEGEGRDKMLRDLDEMETMVASSLDFAR---GEAVDETTET 300 Query: 81 IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVT 137 I L +E + ++ + + W + R A + L NL + G + Sbjct: 301 IDLAATLEAICDNAADMGLAAEFEWERRLVCACRPAAIKRALANLI---ENAARYGRQAK 357 Query: 138 ISVQDSKNENIFSLKINGNLARFPEK 163 + + ++ +G E Sbjct: 358 VRAHATDQAVEVVIEDSGPGIPEAEL 383 >gi|301065968|ref|YP_003787991.1| signal transduction histidine kinase [Lactobacillus casei str. Zhang] gi|300438375|gb|ADK18141.1| Signal transduction histidine kinase [Lactobacillus casei str. Zhang] Length = 336 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I H + +P+ A +N LE++ E +L+ + A + + + LA + Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182 Query: 82 GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122 + Q +D + DK++ + W + + L+N+ Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 A GG++ I + G A P F + G + ++ Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 I + EN RL E + Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327 >gi|313498519|gb|ADR59885.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 553 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 72/179 (40%), Gaps = 15/179 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLS---SMSAIIRLKFMRLAFG-YT 74 I HD + + +I +LEL + ++ + QL+ +S + A ++ + LAF Sbjct: 181 IAHDFNNLLASILGALELAGQRLVQQQLTDTAQLLEISRHNAQRAAALVQRL-LAFSRQQ 239 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK----ILLNLFMVAH 127 V + + + + D I+ V + + R A+ LLNL + A Sbjct: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRIDAQQLENALLNLCINAR 299 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG ++I + + + + +++ RF + + + ++ ++ Sbjct: 300 DAMPLGGTLSIGCANVEVQGAEARQLDLTAGRFLRIRVEDTGMGMSKAVMQRALEPFFT 358 >gi|294054893|ref|YP_003548551.1| PAS/PAC sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614226|gb|ADE54381.1| PAS/PAC sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 633 Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 12/155 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---LKFMRLAFGYT 74 L + + H++ +P+G I +E L + E + + A + + F L + Sbjct: 396 LAAGVAHEVKNPLGVIQLGVEYLQKQIQEPPELLELMEDMKVATDKANEVIFELLDYSAP 455 Query: 75 GSVD-SLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKI---LLNLFMV 125 + + + ++ + + + RV+ T E + +S + +K+ L+NLF+ Sbjct: 456 HEITMQPVNMNELLHRVLGLMRHNFNKAQIRVRDHSTDEPLFVSMDSSKMEQVLINLFLN 515 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 A + +P GG++TI + ++ S + RF Sbjct: 516 AISVMPDGGELTIRSSTQRMQSAGSNVSSELTERF 550 >gi|118593272|ref|ZP_01550657.1| sensor histidine kinase [Stappia aggregata IAM 12614] gi|118434163|gb|EAV40819.1| sensor histidine kinase [Stappia aggregata IAM 12614] Length = 482 Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 15/202 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI ++ E +++ D++++ + + L+F R Sbjct: 282 ISHDLRTPITSLRLRAEFIEDEENRDKMIETLEEMAAMTEAALRFTRD--DAQTENAENA 339 Query: 82 GLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 LG I E + D + + V G + R A + L NL + G +V++ Sbjct: 340 DLGAILEALAGDQQDLGHQCSVETEGRIVLPCRPMALKRALRNLI---ENGIRYGDRVSV 396 Query: 139 SVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 S E + + G E F ++ + + T + + H Sbjct: 397 HAARSAGEALIRITDEGPGIPEERLKDVFEPFVRLEESRNDET-GGIGLGLAITRSIIHA 455 Query: 193 NKIRLLPEIIDDHNVVLSALLE 214 + R+ + + + L Sbjct: 456 HGGRIDLKNRPEGGLEADIRLP 477 >gi|316934712|ref|YP_004109694.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602426|gb|ADU44961.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 707 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 15/122 (12%) Query: 48 EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 +I + L F R + LGD D + R + Sbjct: 376 RSFDMIDSAVAKGTALTRQLLSFSR----RHNVAAQAVDLGDAVNKFADVLRQSVRSDIG 431 Query: 104 WTGEKIDLS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 E D E LLNL + A ++P GG++TIS+ +N +++G+ Sbjct: 432 IVIEPPDQPVVVTIDPNEFEIALLNLALNARDAMPDGGRITISIHTETLKNFGPRRLSGS 491 Query: 157 LA 158 A Sbjct: 492 YA 493 >gi|39997587|ref|NP_953538.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39984479|gb|AAR35865.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 830 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 34/225 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSAII 62 L +L L + I H++ +P+ + L+ L + + + +Q I Sbjct: 615 RLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKALQEIERVERLVAG 674 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERA 116 L F + + + D+ +VI+D + + +R V + + + + R Sbjct: 675 LLNF-------SSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPVFRIDV 727 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169 + LLNL A ++P GG V ++ + + ++ G P F Sbjct: 728 EKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPLIFEPFFT 787 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + E+ R+ E + L Sbjct: 788 RKGAGTGLGLSI----TQRIVEEHHGRISVESSAGAGTTFTITLP 828 >gi|322436618|ref|YP_004218830.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164345|gb|ADW70050.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 386 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 29/227 (12%) Query: 11 SMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSA 60 S L A L S I H+I +P+ A+ N + L+ ++ ++L+R+ + Sbjct: 156 SEKLAAVGQLASSIAHEINNPLEAVLNLVYLVRGADTLEDARHYANLAEIELVRV-ADIT 214 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTG----EKIDLSR 113 + L+F R + + + L D I A +R++V E L Sbjct: 215 MQTLRFHR-----QQTAAAPVNLEDTITAILRLYASRFPARRIKVEQYLRASHEPYLLEG 269 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVD 169 + ++L NL A+ ++P GG +TI + + + + I F + Sbjct: 270 DIRQVLNNLIRNAYDAMPHGGTLTIRLHSATCLKTSIPGVRITIADTGTGFLPAMRGHLF 329 Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + +++ R+ + V + L Sbjct: 330 EPFHTTKEVTGTGLGLWITKGIVDKHEGRIYMRSREGQGTVFTIWLP 376 >gi|197120179|ref|YP_002140606.1| HAMP domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197089539|gb|ACH40810.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 468 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 42/227 (18%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQL------IRLSSMSAII------ 62 L + I H+I +P+ I +++ L ++ L I+ A Sbjct: 250 LAAGIAHEIRNPLNYISLAIDHLKSEFLPSCPEKAQDLESIANNIKEEVRKANYMVLNFM 309 Query: 63 ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---- 112 +L+ R+ + L+ Q+++D + ++ ++V + Sbjct: 310 NYGRPLKLRLQRVCY------PELVDK--AMQLMKDRL-DERGIEVVREIPEDLPPMLAD 360 Query: 113 ----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQI 167 R L N + ++P GGK TI + F L + P+ ++ Sbjct: 361 PELMRN---CLCNFISNSTQAMPEGGKFTIGASLAPETGQFCLTFSDEGTGIEPQDLEKV 417 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E+ + S L Sbjct: 418 FQPYFTTKEAGIGLGLAITERIVREHGGSIAVRSTKGEGTTFSVTLP 464 >gi|298506526|gb|ADI85249.1| sensor histidine kinase, Cache and HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 830 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 34/225 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSAII 62 L +L L + I H++ +P+ + L+ L + + + +Q I Sbjct: 615 RLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKALQEIERVERLVAG 674 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERA 116 L F + + + D+ +VI+D + + +R V + + + + R Sbjct: 675 LLNF-------SSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPVFRIDV 727 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169 + LLNL A ++P GG V ++ + + ++ G P F Sbjct: 728 EKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPLIFEPFFT 787 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T I + E+ R+ E + L Sbjct: 788 RKGAGTGLGLSI----TQRIVEEHHGRISVESSAGAGTTFTITLP 828 >gi|218710598|ref|YP_002418219.1| putative sensor histidine kinase [Vibrio splendidus LGP32] gi|218323617|emb|CAV19885.1| putative sensor histidine kinase [Vibrio splendidus LGP32] Length = 477 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 16/200 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HDI +P+ + E++D+ + +L+ M L++MR + + Sbjct: 282 ISHDIKTPLACLKLRTEMMDDEQTKLRFEKLLNEVDMMLNGALQYMR-----ENDIHEEL 336 Query: 82 GLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGK 135 DI ++E AV + V + + A + L NL + G Sbjct: 337 EWIDINDILEQCAAVHNKNGVCVSLIDLPRIELYGKPLAIKRCLFNLV---DNGVKYGNT 393 Query: 136 VTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193 V IS+ + L+ G + EK + + ++ I+ + +A + Sbjct: 394 VDISMFSHSDSIQIVLRDAGKGIKEDMLEKVFEPYFRDNDTGIEGSGLGLAIARSIARAH 453 Query: 194 KIRLLPEIIDDHNVVLSALL 213 + + + + +L Sbjct: 454 GGDVQLSNSPEGGLEVDIIL 473 >gi|254414754|ref|ZP_05028519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178602|gb|EDX73601.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 367 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 27/221 (12%) Query: 20 SRICHDIISPI-GAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLK----FMR 68 S + HD+ +P+ GAI ++L +++V++++ S +++ ++ R Sbjct: 142 STLTHDLKTPLLGAIET-IKLFQGGQFGTITPPQEKVLRMMDRSHHASLQLIQTLLDVYR 200 Query: 69 L-AFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSR---------ERA 116 A G + + E+VI F +A +RV + + D R + Sbjct: 201 NDAEGLKLQRQPVNLVALAEEVIATFTDLAASRRVHILLNQSESDFRRSLWVNGDALQLQ 260 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVE 173 ++ NL + A PRGGKV + V I + G P F + G+ Sbjct: 261 RVFANLLVNAINHSPRGGKVEVRVASPGEYQIVRMLDRGQGITEEELPHLFERFYQGHTN 320 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + + E + L Sbjct: 321 RQATGSGLGLYLTRQIIEAHGGTIWAENRKPKGALFGFKLP 361 >gi|78355552|ref|YP_387001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217957|gb|ABB37306.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 498 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 19/212 (8%) Query: 18 LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L + I H+I +P+ AI N+L L ++D + R+ + +R + Sbjct: 279 LATYIAHEIRNPLFAIGGFANAL--LRSPSLDDNAREKARIILEESRRLDTILRSTMNFA 336 Query: 75 GSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA------KILLNLF 123 D G D+ ++ D + +KR + L R + L+NL Sbjct: 337 KPSDPRRGDVDMNHIVRDTMWLMRLNDEKRSITTGVDLTEPLPLARGDADMTKQCLINLV 396 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVESTIDSHDIQ 182 A ++PRGG +T+ + + +++ PE+ + + + + Sbjct: 397 KNAQEAMPRGGSLTV--RTGMKQRGIFIQVEDTGTGIPEEIRENVFSPFFSTKDKGAGLG 454 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L E + + + ++ L+ Sbjct: 455 LAMTKKLIEEMGGAVELQTAEGKGTSVTLFLQ 486 >gi|13472175|ref|NP_103742.1| sensor/response regulator hybrid protein [Mesorhizobium loti MAFF303099] gi|14022920|dbj|BAB49528.1| probable sensor/response regulator hybrid protein [Mesorhizobium loti MAFF303099] Length = 690 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 22/180 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMS----AIIRLKFMRLAFGY 73 + HD + + AI + L LL+ D+ V+ L R S+ L F R Sbjct: 323 LAHDFNNLLAAILSGLGLLERHATLDDQARQVVDLTRRSAKQGAELVSRMLAFSR----R 378 Query: 74 TGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGEKID-LSRERA----KILLNLFMVA 126 + + L + + +A + ++ W + L+ L+NL A Sbjct: 379 QNLKPAAVHLATLGDTMNGLVAPVLGGLIRFEWKIDNSVWLAHVDVGQLELALMNLVFNA 438 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG +T+ Q+ E G+ + + I + ++ ++ Sbjct: 439 RDAMPSGGTITVHAQNRVIEIASEDLPPGDYVVV---TVKDTGAGIPQDILAKVVEPFFT 495 >gi|309810842|ref|ZP_07704643.1| putative histidine kinase KdpD [Dermacoccus sp. Ellin185] gi|308435148|gb|EFP58979.1| putative histidine kinase KdpD [Dermacoccus sp. Ellin185] Length = 879 Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 18/215 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSL------ELLDEVGIEDEVMQLIRLSSMSAIIR----LK 65 ALL + + HD+ +P+ I ++ E+ + E+++ + S+ L Sbjct: 617 ALLSA-VSHDLRTPLAGIKAAVGSLRSDEVTFSPEDQAELLEAVETSADRLDALIGNLLD 675 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 RL G + I L ++ + RV + + + L V Sbjct: 676 ASRLQTGALVANPREIDLAEVVTPAVRALETPDRVTWHLDDAARHVVADPGLLDRVLANV 735 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSH 179 +L GG + V S L++ + P++ + + G+ + D Sbjct: 736 LENALRHGGSDGVVVTTSALGPRVELRVADHGPGIPDEAREEIFRPFQRYGDAPAG-DGI 794 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L L E V + +L Sbjct: 795 GLGLAVARGLTEAMGGMLEAETTPGGGVTMVIVLP 829 >gi|294675548|ref|YP_003576164.1| sensor histidine kinase [Prevotella ruminicola 23] gi|294473924|gb|ADE83313.1| sensor histidine kinase [Prevotella ruminicola 23] Length = 371 Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 17/150 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--FGYTGSVDSLI 81 H + +PI ++ +E+L E +D+ LI + RL+ R+A F GS+ Sbjct: 174 HQLGTPISSLMAWVEILKENHPDDD---LIPE-MDKDVKRLE--RIAERFSKIGSLPEPT 227 Query: 82 --GLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAKILL-----NLFMVAHASLPR 132 + ++ + D++ +V+++ D+ L NL A ++ Sbjct: 228 PGSMNEVIAHVVDYMRRRTSNKVEITTQIPDHDVVVNMNASLFEWVIENLCKNAVDAMEG 287 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPE 162 GK++I + D + + G R + Sbjct: 288 AGKISIQLIDDDHRVAIEITDTGKGIRKKD 317 >gi|227535577|ref|ZP_03965626.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186707|gb|EEI66774.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 336 Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I H + +P+ A +N LE++ E +L+ + A + + + LA + Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182 Query: 82 GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122 + Q +D + DK++ + W + + L+N+ Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 A GG++ I + G A P F + G + ++ Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGLPIAEADMPHLFERFFRGQYATA-NNV 301 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 I + EN RL E + Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327 >gi|153005834|ref|YP_001380159.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029407|gb|ABS27175.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 233 Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 10/206 (4%) Query: 18 LCSRICHDIISPIGAIHNSLEL-LDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 L +++ H++ +P+ A+ L+L L E + L+ + L+ + Sbjct: 23 LGAKVAHELKNPLTAVKALLQLGLRNPAEAASHERLALVEREVARMLEILQRYLACYRPL 82 Query: 75 GSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 ++ + + + R+ R + L NL Sbjct: 83 EELEPTPVALGPLAADTLLALSARAADAGVRLSTRGDATAEADPRRLREALQNLVSNGIE 142 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 + PRGG+V + V + ++ G P+ ++ + D + Sbjct: 143 ATPRGGEVVVEVLARADGAEIVVRDTGRGM-APDTLRRLGTPFFSTREDGTGLGVVLARA 201 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + L E A L Sbjct: 202 AIARHGGTLRYESAPGKGTTARATLP 227 >gi|115378951|ref|ZP_01466084.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|310818264|ref|YP_003950622.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115364027|gb|EAU63129.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391336|gb|ADO68795.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 639 Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 23/216 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 L + + H+I +P+ A+ E L E + ++ IR SS L+F R Sbjct: 424 LAASVVHEINNPMTAVATYAEALLMNARLRPNSTAEQDKLKKIRESSDRI---LRFTRDL 480 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKIDLSRERAKILL 120 +++ + L I + + +V V + ++ + Sbjct: 481 VSYARPAKEKPEQVPLESILEQAVSYCEHVVSHAKVNVERDYAPLPPVSAVRANLVQVFV 540 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL A ++ GGKV +S + + + ++ G P+ I D + + Sbjct: 541 NLITNACHAMVSGGKVMLSTRRDGQDAVVLVRDTGTGI-DPKHLGHIFDPFFTTKEEGKG 599 Query: 181 IQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 I+ + + R+ + V + L Sbjct: 600 TGLGLSIVQGIVESHGGRITVDSTLGEGTVFTLRLP 635 >gi|78224348|ref|YP_386095.1| histidine kinase [Geobacter metallireducens GS-15] gi|78195603|gb|ABB33370.1| histidine kinase [Geobacter metallireducens GS-15] Length = 484 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 68/229 (29%), Gaps = 46/229 (20%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQLIRLSSMSAIIRLKFMR 68 L S I H+I +P+ I +++ L V I+ A + Sbjct: 253 LASGIAHEIRNPLNYISLAIDHLKSEFTAACPDKTERVVPVADKIKEEVRRANYMVVNF- 311 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAK------I 118 + FG + I ++ + + ++RV V T DL R Sbjct: 312 MNFGRPLKLRITEISYRELIEKALPLLEEKLAEQRVTVR-TAIPTDLPAMRVDGEMLRNC 370 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 L N A ++P GG VT+ + +N F L + G E + + Sbjct: 371 LFNFVTNAAQAMPDGGTVTLGATFDREQNRFLLTFSDEGC-----------GIREEDL-A 418 Query: 179 HDIQFYYVILLA-------------HENKIRLLPEIIDDHNVVLSALLE 214 Q +Y A E+ + + LL Sbjct: 419 KVFQPWYTTREAGIGLGLAITERIVREHGGEIRVASSAGKGTTFTVLLP 467 >gi|269104853|ref|ZP_06157549.1| signal transduction histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161493|gb|EEZ39990.1| signal transduction histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 481 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 41/218 (18%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + EL+D+ + + ++++ + L+ +R Sbjct: 280 LFSSISHDLKTPITRLRLRAELIDDESKIEKFNRDLDELEMMVKGA------LQCVR--- 330 Query: 72 GYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KIL 119 L + + + E + ++V++ +++ A + Sbjct: 331 --------DTDLHENLVTVDVLDILHHIAEGHNSQQRKVRILEKPIAPLMAKPLALKRCF 382 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTID 177 NL + G +VT+ + D + + +K G ++ + + + D Sbjct: 383 TNLI---DNGVKYGERVTVLISDESDALVLIIKDQGKGIPLEQQ-DAVFEPYYRLAKDKD 438 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 H + + + L +D + + L + Sbjct: 439 GHGLGMGIARNIVRAHGGDLTIHNANDGGLEVKVFLPR 476 >gi|220918232|ref|YP_002493536.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956086|gb|ACL66470.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 512 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 61/155 (39%), Gaps = 17/155 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAI----IRLKFMRLAFGYTGSVD 78 H++ +P+GAI +L+++D G + + ++R S L R+ G + Sbjct: 161 HELRNPLGAIVLALDVIDRRGAAEPRQLDVVRRQSRQLSRLVDDLLDVSRVTSGKIALHN 220 Query: 79 SLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 + L + Q V R +V ++ L + ++ + + +L Sbjct: 221 RPVDLAGLVIRAVEAMQPSAAAAGVSLRAEV--APGEVPLVGDPVRLEQVVANLVGNALK 278 Query: 132 R---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 GG V ++++ S +E + ++ +G + Sbjct: 279 YNRPGGHVVVALEASGDEAVLRVRDDGIGLAEHDL 313 >gi|300788745|ref|YP_003769036.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] gi|15011030|gb|AAK77358.1|AF331073_2 histidine kinase [Amycolatopsis mediterranei U32] gi|7340668|emb|CAB83037.1| putative histidine kinase [Amycolatopsis mediterranei] gi|299798259|gb|ADJ48634.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] Length = 472 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 16/203 (7%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTGSV 77 HD+ +P+ ++ +++ LD E ++ + L+ R G Sbjct: 270 HDLRTPLASMIATVDTLDHAEPATRTRAAAILGTQARRLAKLVEDLLEIARFDAGKADLR 329 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK-V 136 + + L D+ + V+ V S + R ++ NL + P G V Sbjct: 330 VAPVDLADLVADAAEVTGVEAAVTASGDVTVVADPRRVHTVVANLL---SNAAPHGAMPV 386 Query: 137 TISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHE 192 T+++ + ++ + + G P F + G+ + Sbjct: 387 TVTLDGTGDDVVVRVADAGPGVPEDLLPVLFDRFTRGDHARQATEGSGLGLAIARENVLA 446 Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215 + L +D V + L + Sbjct: 447 HGGSLAVH--NDGGAVFTVRLPR 467 >gi|327381909|gb|AEA53385.1| Sensor protein [Lactobacillus casei LC2W] gi|327385070|gb|AEA56544.1| Sensor protein [Lactobacillus casei BD-II] Length = 336 Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I H + +P+ A +N LE++ E +L+ + A + + + LA + Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182 Query: 82 GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122 + Q +D + DK++ + W + + L+N+ Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 A GG++ I + G A P F + G + ++ Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 I + EN RL E + Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327 >gi|257439008|ref|ZP_05614763.1| two-component sensor histidine kinase [Faecalibacterium prausnitzii A2-165] gi|257198593|gb|EEU96877.1| two-component sensor histidine kinase [Faecalibacterium prausnitzii A2-165] Length = 512 Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 22/149 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---FGYTGSVDSL 80 HD+ SP+ A+ + L+ L+ E + + + L+ RL F Sbjct: 303 HDLRSPLFAVSSGLDTLE---AAPEALPALLPALQQRTAFLR--RLTEDLFLAAKLEQKQ 357 Query: 81 IGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLS--RERAKI---LLNLFMVA 126 + L + + + IA +K+ V +L ++ ++ L NL A Sbjct: 358 VMLNEDRVSLGEVIAAVCDSCREEAEKKGVVLQAPPASELPVWGDQIRLQQILQNLLTNA 417 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING 155 P GG +T+S + + S++ G Sbjct: 418 IHYTPAGGSITVSSRVEAGAALVSVRDTG 446 >gi|196231754|ref|ZP_03130611.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196224226|gb|EDY18739.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 550 Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L AL + S I HD + + +I ELL E + ++ I + A ++ +R Sbjct: 174 RLAALGVMASGIAHDFNNTLSSILGYGELLLESPDHTDYLKRILSAGHDARQIVRRLR-E 232 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG---------EKIDLSRERAK 117 F G+ + + +I+ + + ++W E L+ + Sbjct: 233 FYKVGNTGEPLAAVHLNPLIDQAVTLTMPRWNNQALTWGAHITVKREFRELPILAGNPVE 292 Query: 118 I---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + NL A +LP GG++ I + + +G Sbjct: 293 LRELFTNLIFNAVDALPHGGQILIRTAVEGETIVVRVTDDG 333 >gi|254476854|ref|ZP_05090240.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Ruegeria sp. R11] gi|214031097|gb|EEB71932.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Ruegeria sp. R11] Length = 747 Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 69/193 (35%), Gaps = 21/193 (10%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78 HD + + AI +LL D+ + + I ++ A + + LAF Sbjct: 383 HDFNNLLTAISGHCDLLLLRHDQGDQDFGDLIQIHENANRAAALVSQL-LAFSRKQTLQP 441 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 ++ + D + + +++ ++ + + + S R+ ++L+NL + A ++P Sbjct: 442 EVLDVRDTLSDLTHLLNRLVGEKITLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMP 501 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYYV 186 +GG++ + + + P + + + I +Q FY Sbjct: 502 QGGEIRVETEAVVLDEPLE---RDRAVVPPGDWVTVKVSDEGVGIAPDKLQKVFEPFYTT 558 Query: 187 ILLAHENKIRLLP 199 + L Sbjct: 559 KRTGEGTGLGLST 571 >gi|196231613|ref|ZP_03130471.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224466|gb|EDY18978.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 605 Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 64/143 (44%), Gaps = 10/143 (6%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLK----FMRLA 70 L S I HD+ + + I S +L + +++ +++ I S+ +K F R Sbjct: 233 LASGIAHDLNNILSPILMSCGILRKEFDDEDTLKMLSIIEGSAERGAGIVKQVLTFARGV 292 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 G + + ++ +V+ + +Q ++ + + + ++ LLNL + A Sbjct: 293 EGERVLLQLKHLVSELAKVMAQTFPRNIDIQTNFPPDLWTVMGDATQLHQVLLNLCVNAR 352 Query: 128 ASLPRGGKVTISVQDSKNENIFS 150 ++P+GG + +S ++ + F+ Sbjct: 353 DAMPQGGGIRLSAENVNIDQHFA 375 >gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 396 Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 34/221 (15%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 S L A+ HD+ +PI + ELLD+ ++ E+ Q + L FMR Sbjct: 186 SATLAAM-----SHDLKTPITRLRLRAELLDDGELKQEISQDLHDMESMVQATLAFMRG- 239 Query: 71 FGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 G + + + + + ++ D V V + + ++ R +A + L NL Sbjct: 240 -GDSAEPIQPLDVTALLESLQADAEEVGAHVSIEGSTDRPYPGRPQALKRCLSNLV---D 295 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-------------RFPEKFTQIVDGNVES 174 + G + I V+D + + + + G R ++ G Sbjct: 296 NACKYGNRAEILVEDDERQLVIRVLDQGPGISEAQLERVFEPFYRIERSRSRDTGGTGLG 355 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I A + L+ + + L + Sbjct: 356 LTIARAI--------AQIHGGTLVLHNLKRGGLEAMLTLPR 388 >gi|28868812|ref|NP_791431.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|28852051|gb|AAO55126.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|331017348|gb|EGH97404.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 403 Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++D+ +Q+ I S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDDKTLQVAQHILTSGQRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +RV + ++L R + +I L + ++ Sbjct: 242 PLSIHDAHGLDKTLEHVVSEIQRVHPSRLIRSNIGALELIRCDHERIAQLLSNLVSNAIT 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185 G ++ V + F L + PE + I + Y Sbjct: 302 HGASDSSVEVAAGVLGDRFVLSVANQGEPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIAQAHGGTLDVCSTQEGGTVFTFSMP 390 >gi|27804857|gb|AAO22894.1| sensor protein [Myxococcus xanthus] Length = 638 Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMR--LA 70 L + + H+I +P+ A+ + L + G + +R S+ L+F R ++ Sbjct: 422 LAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLRKILESSHRILRFTRDLVS 481 Query: 71 FG-YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKIDLSRERAKILLNL 122 + + L I + F RV + + ++ +NL Sbjct: 482 YARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIELPPLSAVRANLVQVFVNL 541 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A ++P GG V ++ + + ++ G P+ +I + + + Sbjct: 542 ITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGI-EPKHLQRIFEPFFTTKPEGRGTG 600 Query: 183 FYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 I + + RL E L Sbjct: 601 LGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 634 >gi|157372129|ref|YP_001480118.1| sensory histidine kinase CreC [Serratia proteamaculans 568] gi|157323893|gb|ABV42990.1| integral membrane sensor signal transduction histidine kinase [Serratia proteamaculans 568] Length = 472 Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 25/157 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM------------RLA- 70 H++ SP+ AI + ELL E + + R++ + R A Sbjct: 265 HELKSPLAAIRGAAELLQEQPPAATAQRFLTN-IEQQSARIQQLVDKLLVQARLESRPAL 323 Query: 71 ----FGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 V + + + + V+ ++ G+ + +S + L NL Sbjct: 324 DLVPLAMATLVRQAVAGKEAQAARRSVLLQVEGVEDITLNGDGLLIS----QALTNLLDN 379 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 A P GG + + + ++E + + ++ + + P+ Sbjct: 380 ALDFTPVGGTIKV--RGERHEGHYQVTVSDDGSGIPD 414 >gi|88703694|ref|ZP_01101410.1| two-component sensor histidine kinase [Congregibacter litoralis KT71] gi|88702408|gb|EAQ99511.1| two-component sensor histidine kinase [Congregibacter litoralis KT71] Length = 492 Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 21/181 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRL-----KFMRLAF 71 L + + HD+ +P+ +I LE L ++ IR + A +RL + L+ Sbjct: 270 LIANVSHDLRTPVSSIQGFLETLMVKDLDANAQTDYIRTAHKHA-LRLNELISELFELST 328 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS-RERA----KILL 120 +GSV+ + ++I+D + A ++ + ++ + L R ++L Sbjct: 329 LESGSVEPHWENFPVMELIQDIVLDHEVSARERGITLTTEAPRESLQVRADIAMIHRLLE 388 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID 177 NL A P+GG++TI V + + NG+ P F + + +ST D Sbjct: 389 NLIHNALRHTPQGGEITIRVIEDAQRVQVQVSDNGDGIASQDIPRIFERFYQRDTDSTTD 448 Query: 178 S 178 S Sbjct: 449 S 449 >gi|108759665|ref|YP_634982.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463545|gb|ABF88730.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 631 Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMR--LA 70 L + + H+I +P+ A+ + L + G + +R S+ L+F R ++ Sbjct: 415 LAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLRKILESSHRILRFTRDLVS 474 Query: 71 FG-YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKIDLSRERAKILLNL 122 + + L I + F RV + + ++ +NL Sbjct: 475 YARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIELPPLSAVRANLVQVFVNL 534 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A ++P GG V ++ + + ++ G P+ +I + + + Sbjct: 535 ITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGI-EPKHLQRIFEPFFTTKPEGRGTG 593 Query: 183 FYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 I + + RL E L Sbjct: 594 LGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 627 >gi|295101919|emb|CBK99464.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii L2-6] Length = 584 Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 24/150 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL----AFGYTGSVDS 79 HD+ SP+ A+ LE L G E + + + R++F+R F Sbjct: 375 HDLRSPLFAVSGGLETL---GSAPEALPALLPALRQ---RIEFLRRLTEDLFLAAKLEQK 428 Query: 80 LIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKID-LSRERAKI---LLNLFMV 125 I L + + + A K V++ + + + + ++ + NL Sbjct: 429 QILLNEDRAALNEEAAVVCAACRSEADQKGVELHLSADTPLSVWGDSVRLQQIIQNLVTN 488 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A P GG + + + S++ G Sbjct: 489 AIHYTPAGGSIHVDCRAEGETACVSVQDTG 518 >gi|167768473|ref|ZP_02440526.1| hypothetical protein CLOSS21_03032 [Clostridium sp. SS2/1] gi|167709997|gb|EDS20576.1| hypothetical protein CLOSS21_03032 [Clostridium sp. SS2/1] gi|291560448|emb|CBL39248.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [butyrate-producing bacterium SSC/2] Length = 343 Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58 M KN ++ +L L+ S I H + +P+ + + LL + E+E M + Sbjct: 110 MQKNRHKVDMERQELQMLI-SDISHQVKTPVSNLQMVTDTLLTKPVSEEERMDFL-QGIR 167 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGL-GDIEQVIED--FIAVDKRVQVSWTGE 107 S +L F+ RL G L + Q + + A K + VS Sbjct: 168 SQTDKLDFLFQALVKTSRLETGAIRLEKKDSSLFHTLAQAMSSIVYAAEKKEIAVSVDCP 227 Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 + + S+ ++ L NL A P GGK+++SV + + NG Sbjct: 228 ENLIISHDSKWTSEALFNLLDNAVKYTPSGGKISVSVVQWEMYVEVKVTDNGKGISESNQ 287 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I Y + + S +L Sbjct: 288 AAIFRRFYREEEVHDQQGVGIGLYLAREIVTRQGGYIKVVSELRQGSEFSIMLP 341 >gi|159898658|ref|YP_001544905.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891697|gb|ABX04777.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 943 Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 22/194 (11%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR---LSSMSAIIRLKFMRLAFGYTG 75 I HD + + +I L+LL VG D + + I S+ A + + LAF Sbjct: 581 IAHDFNNILTSILGGLDLLQRRINVGRFDTIERYINSAIKSAKRAAALTQRL-LAFSRQQ 639 Query: 76 SVD-SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAK--------ILLNLFM 124 ++D I + + Q ++D + +++QV+ R + LLNL + Sbjct: 640 ALDVQPININSLIQSLDDLLQRSLGEQIQVATNLSDDV---WRVRTDANQLENALLNLAI 696 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++P GG +TIS + + L+++ + E G I+ F+ Sbjct: 697 NARDAMPYGGILTISTSNIDAQQANQLQLDPHEYVLIEVI-DTGTGMSSEVIERAFDPFF 755 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 756 TTKPLGQGTGLGLS 769 >gi|110679929|ref|YP_682936.1| sensor kinase-like protein, putative [Roseobacter denitrificans OCh 114] gi|109456045|gb|ABG32250.1| sensor kinase-like protein, putative [Roseobacter denitrificans OCh 114] Length = 776 Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 19/131 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 415 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 470 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + + D + + ++V ++ T + + L R+ ++L+NL + A Sbjct: 471 LRPETLDMRDTLADLTHLLNRLVGEKVTLTLTHDPVLLPIRADKRQLEQVLMNLVVNARD 530 Query: 129 SLPRGGKVTIS 139 ++P GG++ I Sbjct: 531 AMPNGGEIRIE 541 >gi|90424699|ref|YP_533069.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90106713|gb|ABD88750.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 702 Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 42 EVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 + + + +I + A L F R + S ++ L + D + Sbjct: 369 DDPQDRRALDMIDSAVNKATTLTRQLLSFSRR---HAVSA-KVVDLAESVHRFSDVLRQS 424 Query: 98 KRVQVSWTGEKIDLSRERAKI--------LLNLFMVAHASLPRGGKVTISVQDSKNENI 148 R ++ E+ +I LLNL + A ++P GG++TIS++ + Sbjct: 425 VRSDIAIEIERPAGPLP-VRIDPNEFEIALLNLALNARDAMPDGGRITISIKRRIDGKT 482 >gi|256824368|ref|YP_003148328.1| signal transduction histidine kinase [Kytococcus sedentarius DSM 20547] gi|256687761|gb|ACV05563.1| signal transduction histidine kinase [Kytococcus sedentarius DSM 20547] Length = 389 Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 28/206 (13%) Query: 20 SRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIR 63 S + H++ +P+ A+ + + DE E QL I S + R Sbjct: 152 SDLAHELRTPVSVLTVYHEALQDGVSHWDEPTGELMGEQLARLTRLVEDINDVSRAEEGR 211 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERA-KILLN 121 ++ R G +G + + E + + + +D+ R+R ++L N Sbjct: 212 IELDRSPQGVSGLLHAATEAHK-----EAYATKGVALTMDADPGLAVDVDRQRMGQVLGN 266 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177 L A P GG+VT+ + S + S+ G P F + G+ D Sbjct: 267 LLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDH 326 Query: 178 -SHDIQFYYVILLAHENKIRLLPEII 202 + L + L Sbjct: 327 GGSGVGLAISRALIQAHGGTLSATST 352 >gi|168185721|ref|ZP_02620356.1| sensory transduction histidine kinase [Clostridium botulinum C str. Eklund] gi|169296297|gb|EDS78430.1| sensory transduction histidine kinase [Clostridium botulinum C str. Eklund] Length = 552 Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDG 170 +I+LNL A P+GG + +++ D + +++ NG ++FTQ+ D Sbjct: 412 RIMLNLLSNAVKFTPKGGNIKVNIHDDGDRIKITVRDNGIGIPKDKTHIIFDRFTQV-DK 470 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + I Y V L + R+ + L Sbjct: 471 SFTRSTEGSGIGLYLVKALVEMHNGRISVDTKYGEGSEFIIDLP 514 >gi|311103713|ref|YP_003976566.1| heavy metal sensor kinase family protein 1 [Achromobacter xylosoxidans A8] gi|310758402|gb|ADP13851.1| heavy metal sensor kinase family protein 1 [Achromobacter xylosoxidans A8] Length = 466 Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 18/203 (8%) Query: 24 HDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 H++ +P+ + N +++ + + ++ + L R G Sbjct: 245 HELRTPLATLINGTQVMLSSPRDAAELRDALESNLEELEDLKTLVNDMLFLARADRGERA 304 Query: 76 SVDSLIGLG-DIEQVIEDFIAV----DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 + + + L + +V E + A+ ++ + + L NL A + Sbjct: 305 ADLAPVSLAAEARRVAEYYEAMLEESGVHLRCVGDATVAANAGLVRRALANLISNAIKAT 364 Query: 131 PRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTI--DSHDIQFYY 185 PRGG++ ++ S ++ G A P F + T + H + Sbjct: 365 PRGGEIVLACSASPAGARLEVRNPGAPIPSADLPRIFDRFFRSTHARTPRSEGHGLGLAI 424 Query: 186 VILLAHENKIRLLPEIIDDHNVV 208 V +A + + VV Sbjct: 425 VRAIARMHGGEVDAASGAHGTVV 447 >gi|239631207|ref|ZP_04674238.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525672|gb|EEQ64673.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 336 Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I H + +P+ A +N LE++ E +L+ + A + + + LA + Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182 Query: 82 GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122 + Q +D + DK++ + W + + L+N+ Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 A GG++ I + G A P F + G + ++ Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 I + EN RL E + Sbjct: 302 GIGLAIAAGITRENDGRLFAENTAEG 327 >gi|161528164|ref|YP_001581990.1| histidine kinase [Nitrosopumilus maritimus SCM1] gi|160339465|gb|ABX12552.1| histidine kinase [Nitrosopumilus maritimus SCM1] Length = 417 Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 35/169 (20%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSS----M 58 L ++ L SR+ HDI +P+ I ++LL DE I+ ++LI+ S Sbjct: 206 KLASIGELASRVSHDIRNPLTTIKGVVDLLTSQKSTVTDEKDIQ--RLELIKKSVTQINH 263 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAK 117 L ++R + I L + ++E KRV + + E ++ + Sbjct: 264 QVEDVLDYVR---------TNKISL-EKTSLLEIINLAAKRVSIPDSVEVSYPEKDYTIR 313 Query: 118 --------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + +NL + A ++ R GK+ I ++ N ++ +G Sbjct: 314 CDKLKMEIVFVNLLLNAVDAVRREGKIAIRMKSVDNFIEIQVEDSGPGI 362 >gi|158522818|ref|YP_001530688.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511644|gb|ABW68611.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 595 Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQL----IRLSSMS 59 S L A+ L + + H+I +P+ +I E + + + + + + Sbjct: 376 SRRLAAIGKLAAGVAHEIRNPLSSIK-GFATYFKEKFSDSDQDKKTADTMIYEVERLNRA 434 Query: 60 AIIRLKFMR-LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L+F R ++ T + + + DF + + +R ++ Sbjct: 435 VTQLLEFARPVSLEITEVEPGELIEHSLRLMENDFTNKGIESTARIQTTRPVIRTDRDRL 494 Query: 119 ---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVES 174 LLNL++ A ++ GG++T+++ D N + ++ + EK QI D + Sbjct: 495 NQVLLNLYLNAVDAMESGGRLTVTLSDGDNNDTVTIDVTDTGHGIAEKDMEQIFDPYFTT 554 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V L + E + H + Sbjct: 555 RSRGTGLGLAIVYKLVESLGGTITVESREGHGTTFHIRVP 594 >gi|94969808|ref|YP_591856.1| histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551858|gb|ABF41782.1| histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 321 Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 12/82 (14%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++L+NL + A + P GG VT+S + K + L+++ A P I Sbjct: 206 QVLMNLLLNAAQATPPGGTVTVSAEKVKFNELIELRVSDTGAGIPP------------DI 253 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 H + ++ + L Sbjct: 254 LPHVFEPFFTTKRNQGTGLGLS 275 >gi|11498784|ref|NP_070013.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM 4304] gi|2649399|gb|AAB90059.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM 4304] Length = 456 Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 74/199 (37%), Gaps = 19/199 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 HDI + I AI LE++ + +E +LI L+ + RL + + L Sbjct: 265 HDIANAITAIRAVLEIVRDS--PEEAEKLIPLAIRRSDY---VFRL---INDARELEKAL 316 Query: 84 GDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHASLPR-GGKV 136 +++ +++ + + V+VS E + +S + +LN + ++ GGK Sbjct: 317 EELKPVNVAEMVREVAEQFRNVEVSVEAENVVVSANEGLRAVLN--NILQNAMVHGGGKA 374 Query: 137 TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIR 196 + V ++ I + G P++ + + +T + + Y + Sbjct: 375 RVEVLANERNGIVRVIDYGKG--VPDEIKEKIFEEGFTTGEGMGLGLYITKRILEIFGGE 432 Query: 197 LLPEIIDDHNVVLSALLEK 215 + + + + K Sbjct: 433 IKVRDNEPSGAIFEIKIPK 451 >gi|298527667|ref|ZP_07015071.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511319|gb|EFI35221.1| multi-sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 853 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 19/171 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS----AII 62 LVA+ L + + H+I +P+G I +ELL EV E + I + + Sbjct: 633 KLVAMGQLAAGVAHEINNPLGVILCYVELLKRQFSEVPQGQEDLVTIEKQARNCKRIVSD 692 Query: 63 RLKFMRLAFGYTGSVDSLIG--LGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAK 117 L+F R G T + + L ++ ++ + + ++++ + K Sbjct: 693 LLEFARS--GETSKHTASLNQTLEEVLGMVGEQFKKQGVQIETDLDPDLPQMEMDTNKIK 750 Query: 118 -ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + +NL M A ++ R GK+ IS + +++ + N PE Sbjct: 751 QVFMNLLMNARQAMDGRDGKMHISTRYMAQDSLARVIFWDNGEGIPEYMQD 801 >gi|159044193|ref|YP_001532987.1| histidine kinase [Dinoroseobacter shibae DFL 12] gi|157911953|gb|ABV93386.1| histidine kinase [Dinoroseobacter shibae DFL 12] Length = 779 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 19/132 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ E + I ++ A L F R Sbjct: 406 HDFNNLLTAISGHCDLLLLRHDQGDPEYGDLVQINQNANRAASLVGQLLAFSR----KQT 461 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 LI L D + + +RV ++ + R+ ++L+NL + A Sbjct: 462 LQPELIDLRDTLSDLTHLLNRLVGERVSLTLMTDPDLSPMRADRRQLEQVLMNLVVNARD 521 Query: 129 SLPRGGKVTISV 140 ++P GG++TI Sbjct: 522 AMPEGGEITIEA 533 >gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] Length = 373 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 18/209 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSAIIRLK----FMRLAFGYTGSVD 78 H++ +P+ A+ E L + +E E + I+ + ++ ++ G Sbjct: 156 HELRTPLSALQAYAEALADGVMEPEKAAERIQQEVRAMSRLVRDLSLVSQVESGAVELHP 215 Query: 79 SLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSR------ERAKILLNLFMVAHASL 130 + ++ + + A + L R ++L NL A Sbjct: 216 GPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPRVWADAERTLQVLANLLSNALRHT 275 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDSHDIQFYY 185 P GG+V + + + +FS++ G P F + D + + Sbjct: 276 PEGGRVRLGAERTGQAVVFSVEDTGPGIPEEHLPRIFERFYRIDPSRSRQDGGTGVGLTI 335 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 L R+ E V L Sbjct: 336 AKSLVEAMGGRIWVESQLGRGSVFRFTLP 364 >gi|209966017|ref|YP_002298932.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959483|gb|ACJ00120.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 843 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 22/209 (10%) Query: 24 HDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 HD + + AI N+LEL + E ++ ++ + ++ + LAF Sbjct: 488 HDFNNLLTAIVNNLELARRDPAGAAERLEGALKAARAGTELVRRL-LAF--ARMQPLEPQ 544 Query: 83 LGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR--ERAKI---LLNLFMVAHASLPR 132 D +++ D + AV +RV+VS T + + ++ LLNL + A ++P Sbjct: 545 PTDPGRLLHDILPLLRRAVGERVEVSVTAGRRLPPVLVDPVQLENALLNLAVNARDAMPG 604 Query: 133 GGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 GG++ I +D + + ++ G PE ++ + + Sbjct: 605 GGRLEIRAGVELAEDGTPQVVLTVADTGTGM-TPEVAQRMFEPFFTTKPPGKGTGLGLAS 663 Query: 188 L--LAHENKIRLLPEIIDDHNVVLSALLE 214 L ++ ++ E V Sbjct: 664 LYGFVRQSGGQVRVETAPGRGTVFHLSFP 692 >gi|148545613|ref|YP_001265715.1| sensory histidine kinase CreC [Pseudomonas putida F1] gi|148509671|gb|ABQ76531.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida F1] Length = 478 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 23/206 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75 H++ SP+ AI + ELL + + + RL+ R+ Sbjct: 265 HELKSPLAAIRGASELLQGEDMPADQRARFAGNIERESERLQQMIERLLNLARVEQMQAL 324 Query: 76 SVDSLIGLGDIE-QVIEDFIAV--DKRVQVSWTGEKIDL----SRERAKILLNLFMVAHA 128 + + L + +++ A R+QV + L NL A Sbjct: 325 EDEQQVALAALVDELLLAHAARIEGARLQVRQRVPATLRLLCDPFLMRQALANLLDNALD 384 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQ 182 P GG + ++ SL G R E+F + + Sbjct: 385 FTPEGGTLLFDLERDGERVALSLFNQGQAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLN 444 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVV 208 F V + + L + +D V Sbjct: 445 F--VAEVMQLHGGALAVDNVDGGVRV 468 >gi|302338341|ref|YP_003803547.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635526|gb|ADK80953.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 630 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGL----GDIEQVIED 92 E L + I+ ++ A + + LAF I L ++E++++ Sbjct: 288 EKLHSGEDVASDIDGIQKAAKKATALTRQL-LAFSRRQVLKPKQIDLNRLVREMEKMLQR 346 Query: 93 FIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 ++ D + + + E+ D+ + ++L+NL + A ++P GGKV I+ ++ + E F Sbjct: 347 LVSEDITMTLLPSAERSDVYVDPGQIEQVLMNLVVNARDAMPGGGKVFITTKNHEVERAF 406 >gi|307155197|ref|YP_003890581.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985425|gb|ADN17306.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 675 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 27/161 (16%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIRLSSMSAII----RL 64 A + S HD+ +P+ AI N L + E I+D M+L+R L Sbjct: 458 AYVAS---HDLKAPLRAIAN-LSVWIEEDIKDQLDEDTRHQMELLRGRVHRMEALINGLL 513 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLN 121 ++ R+ G +I +G++ I D +A ++ L S ++L N Sbjct: 514 QYSRV--GRLKGQTEVINVGELLTEIVDSLAPPSEFRIEIVEPMPTLVTESFPLRQVLTN 571 Query: 122 LFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLA 158 L +L G + ISV++ + FS+ +G Sbjct: 572 LI---SNALKHHHNNEGNIQISVEEKEEFYQFSITDDGPGI 609 >gi|254425720|ref|ZP_05039437.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188143|gb|EDX83108.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1097 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 73/199 (36%), Gaps = 41/199 (20%) Query: 22 ICHDI---ISPIGAIHNSLEL-LDEVGIE-DEVMQLIRLSSMSAIIRL-KFMRLAFGYTG 75 I HD+ ++PI I L L L + E + ++ S+ + + + A G Sbjct: 866 IAHDLGNILTPILGIAQLLRLTLTDANASTQEQIDILEKSAQRGTKMVRQILTFAQGSPE 925 Query: 76 S---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------KILLNLFM 124 S D L +I ++ V++ + + D + ++L+NL + Sbjct: 926 SKTTADISALLQEIVDIVRQGFPSSIEVRLEMSLLEDDPGHKAVAVDSTHLHQVLMNLCV 985 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++P GG +TI + + + AR +++ G + Sbjct: 986 NARDAMPNGGVLTIVLDQ--------VSVTEAAARKDP---EVLAG-------------H 1021 Query: 185 YVILLAHENKIRLLPEIID 203 Y+++ + + E+ D Sbjct: 1022 YMVVTVADTGAGIASEVRD 1040 >gi|86159947|ref|YP_466732.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776458|gb|ABC83295.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1088 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 16/156 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+ I NSL +LD ++ L R+A G Sbjct: 736 LSHELRNPLAPIRNSLYILDHAEPAGQQARRAKDIVARQVEHLTRLVDDLLDVTRIARGK 795 Query: 74 TGSVDSLIGL-GDIEQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 + + G +V ED + + V+++ L ++L NL Sbjct: 796 IELRREDLDVVGLARRVAEDHRSLMQGRGVELTIDLLPGALTVNGDPARLTQVLGNLLNN 855 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 A P GG+VT+SV+ + ++ G Sbjct: 856 AAKFTPPGGRVTLSVRAEGDRAALRVRDTGPGIAPD 891 >gi|17229460|ref|NP_486008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131058|dbj|BAB73667.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 759 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 28/145 (19%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEV---MQLIRLSSMSAIIRLK----FMR 68 L S I HD+ + + I +LL ++ ++++ +++ +K F R Sbjct: 396 LASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINAKRGADLVKQVLSFAR 455 Query: 69 LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAK 117 G I L ++ +++++ V W + Sbjct: 456 ------GVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSGDSTQLHQV- 508 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142 L+NL + A ++P GG +TIS ++ Sbjct: 509 -LMNLCVNARDAMPDGGTLTISAEN 532 >gi|194737287|ref|YP_002117074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301231|ref|ZP_02664657.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194712789|gb|ACF92010.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287721|gb|EDY27112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616282|gb|EFY13192.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617275|gb|EFY14177.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625953|gb|EFY22768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626649|gb|EFY23451.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631484|gb|EFY28241.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635197|gb|EFY31915.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642598|gb|EFY39194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646809|gb|EFY43313.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650807|gb|EFY47200.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655893|gb|EFY52194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657292|gb|EFY53571.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665554|gb|EFY61739.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669737|gb|EFY65882.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670984|gb|EFY67116.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679192|gb|EFY75245.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679350|gb|EFY75397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688117|gb|EFY84081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195790|gb|EFZ80965.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200695|gb|EFZ85768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202184|gb|EFZ87240.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209295|gb|EFZ94230.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211620|gb|EFZ96457.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218042|gb|EGA02755.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221331|gb|EGA05753.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225742|gb|EGA09963.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230970|gb|EGA15087.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235752|gb|EGA19834.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240066|gb|EGA24112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242601|gb|EGA26623.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249691|gb|EGA33598.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252574|gb|EGA36415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256932|gb|EGA40644.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262045|gb|EGA45609.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263949|gb|EGA47463.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268438|gb|EGA51908.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 465 Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ +DS + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKDSGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|163746438|ref|ZP_02153796.1| sensor histidine kinase, putative [Oceanibulbus indolifex HEL-45] gi|161380323|gb|EDQ04734.1| sensor histidine kinase, putative [Oceanibulbus indolifex HEL-45] Length = 440 Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ S + HD+ +P+ + L ++DE L+ + +F+ A G Sbjct: 235 TLMLSGVSHDLRTPLTRMRLGLSMIDEEDAAP----LLADVDDMQRMLDEFLNFAKGAAE 290 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILL-NLFMVAHAS 129 + Q I D R E ++ L + + + NL + Sbjct: 291 GEPEKVDPHKFVQTIVDDAQRGGRNVTLLPPEGSGEGRVKLRKVAMRRAVDNLI---SNA 347 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 + G + +SV S ++ NG P++ S +D Q Sbjct: 348 VRYGTQAEVSVMLSDRTLRIRVEDNGPG--IPQERRD-EATRPFSRLDPARNQ 397 >gi|254429234|ref|ZP_05042941.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195403|gb|EDX90362.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 439 Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 11/170 (6%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 ALL + + HD+ +P+ + S E + + + +++ I + F+R Sbjct: 226 ALLLAGVSHDLRTPLTRLRLSAEFMQDEELAKGIIEDIEDMDAILDQFISFIR---DGAD 282 Query: 76 SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 L D I++V + A R ++ ++ L R K +L + +L G Sbjct: 283 EQPDFENLNDLIQEVAGKYPAEQLRFELE-DLPRLMLKRLTVKRML--ANLVGNALKYGA 339 Query: 135 K-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHD 180 V + ++N+ + +++ +G R P G T+ Sbjct: 340 SPVEVRTAVAENKVVLTVRDHGRGVREEDIPLLLQPFSRGEKARTLSGSG 389 >gi|310826639|ref|YP_003958996.1| two-component sensor histidine kinase [Eubacterium limosum KIST612] gi|308738373|gb|ADO36033.1| two-component sensor histidine kinase [Eubacterium limosum KIST612] Length = 670 Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 29/234 (12%) Query: 7 FNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55 + + +L L+ R + HD+ +P+ AI +EL+ ++ + +++I Sbjct: 438 VAVRTRELTTLMNERKKFLSDLAHDLKAPVTAIQGFIELVKYGDVQVDEEVQRYLEVINQ 497 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S +++ ++ F DI +++DF + R G + + Sbjct: 498 KSNEVQTKVRSLQ-EFTSQDEAVMKKERMDIGGLLDDFYENN-RPDAEANGISFSIIKPG 555 Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---F 160 ++ NLF A + P G++ + V + + NG Sbjct: 556 KPIEILGNPELIYRVFENLFYNAMSFTPMNGRIVVEVTLEEGWVVIRFSDNGAGIPPDIL 615 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P+ F + E DS + + V + + + L+ Sbjct: 616 PKIFDRFYTTRGEKN-DSQGLGLFIVRYTIKAHGGTIEVVSEMGEGTTFTIRLK 668 >gi|197122291|ref|YP_002134242.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|220917074|ref|YP_002492378.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|196172140|gb|ACG73113.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|219954928|gb|ACL65312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 502 Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 20/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQ-LIRLSSM 58 + + A+ + + + H+I +P+ + +LELL E +D MQ +R + Sbjct: 269 VRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSDDARHSDIVTEMQHQVRRLTH 328 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SR 113 + L F R A S D L + +I + D +++ Sbjct: 329 TMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQ-SRDGTLELVPELSPGLPAVLADPS 387 Query: 114 ERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ LN+ + A ++ RGG++T+ + ++ G + QI Sbjct: 388 QLEQVFLNICLNACQAMIATRRGGRLTVRSRAGDGTVSVEVEDTGPGI-PADLRAQIFKP 446 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + E+ + + + L++ Sbjct: 447 FFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQQ 491 >gi|191637843|ref|YP_001987009.1| Sensor protein [Lactobacillus casei BL23] gi|190712145|emb|CAQ66151.1| Sensor protein [Lactobacillus casei BL23] Length = 328 Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I H + +P+ A +N LE++ E +L+ + A + + + LA + Sbjct: 124 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 174 Query: 82 GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122 + Q +D + DK++ + W + + L+N+ Sbjct: 175 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 234 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 A GG++ I + G A P F + G + ++ Sbjct: 235 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 293 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 I + EN RL E + Sbjct: 294 GIGLAIAAGITRENDGRLSAENTAEG 319 >gi|186686383|ref|YP_001869579.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468835|gb|ACC84636.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 762 Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 28/145 (19%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEV---MQLIRLSSMSAIIRLK----FMR 68 L S I HD+ + + I +LL ++ ++++ +++ +K F R Sbjct: 396 LASGIAHDLNNILTPILAGAQLLPLKFPDADERTHHLLEILEINARRGADLVKQVLSFAR 455 Query: 69 LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAK 117 G I L ++ +++++ ++ W + Sbjct: 456 ------GVEGKRITLQLRHLIVEVAKILKETFPRSIQISTDVLQDLWMVSGDSTQLHQV- 508 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142 L+NL + A ++P GG + IS ++ Sbjct: 509 -LMNLCVNARDAMPNGGSLIISAEN 532 >gi|218246751|ref|YP_002372122.1| histidine kinase [Cyanothece sp. PCC 8801] gi|257059793|ref|YP_003137681.1| histidine kinase [Cyanothece sp. PCC 8802] gi|218167229|gb|ACK65966.1| histidine kinase [Cyanothece sp. PCC 8801] gi|256589959|gb|ACV00846.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 357 Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 93 FIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 ++ +RV ++ TG+++ + + ++ +NL A PRG +V I +Q +E Sbjct: 223 YLTQSRRVHINITGDRLWVKGDPWQLKRVFINLLSNAINHSPRGSRVEIILQSKGDEQQI 282 Query: 150 SLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + NG P+ F + G + + Y + + ++ E Sbjct: 283 LFRDNGLGISQEELPQLFERFYQGTSDRQAKGSGLGLYLSRQIIEAHGGKIWAENRSPKG 342 Query: 207 VVLSALLE 214 + L Sbjct: 343 AMFGCRLP 350 >gi|114777281|ref|ZP_01452292.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] gi|114552426|gb|EAU54909.1| sensory box histidine kinase/response regulator [Mariprofundus ferrooxydans PV-1] Length = 697 Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIR--LSSMSAIIRLKFMR--LAF-GYTG 75 I HD + + AI S+EL+ E G+ +VM+ + ++ L R LA+ G Sbjct: 337 IAHDFNNLLTAIQGSIELVKLEEGLSPDVMESLDTMDTATRTAADL--CRQMLAYSGKGL 394 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMVAHA 128 L D+ + + I V +VS E ++ + ++LLNL + A Sbjct: 395 MKPEQFNLQDLIEELHGLIDVSVGKEVSLEVEFDPAAKPVSADRSQISQVLLNLSLNAAE 454 Query: 129 SLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 S+P G G + I+V + G A P +T + + + +D Sbjct: 455 SMPAGRHGHIRITVSHRHLSEHADVHFVGKAALQPGDYTVLAVEDDGAGMD 505 >gi|75907566|ref|YP_321862.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701291|gb|ABA20967.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 576 Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 14/161 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRLA 70 L S I HD+ + + I +++LL E +V + + + L+ F R Sbjct: 219 LASGIAHDLNNILTPILMAVQLLQMKLHEPQVQKVLNTLESNVKRGANLLRQVLSFARGI 278 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 G V + +IEQ+++ + Q +S + ++ L+NL + A Sbjct: 279 EGKKTIVPVRKLILEIEQIVQQTFSKSIICQTYIPENLWYVSGDTTQLHQVLMNLVLNAR 338 Query: 128 ASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKF 164 ++P GG + I+ + + ++ L I P K Sbjct: 339 DAMPNGGILKITADNVVLSPQGKHYIKLSIEDTGLGIPAKI 379 >gi|323529788|ref|YP_004231940.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323386790|gb|ADX58880.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 509 Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 24/135 (17%) Query: 24 HDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 HD + + I N LE+L + + + + + I + L F R Sbjct: 164 HDFNNLLAVISNGLEVLAIQSRTAIDKKMIEGMRRAIDRGASLTQQLLSFAR-------Q 216 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRERAK---ILLNLFMVA 126 + ++ +I +F + R +++ + + A+ LLNL + A Sbjct: 217 QPLQAQVYELNALIREFAPMLSRAGNRSTHVELALQPGEAFALVDAARFEAALLNLVVNA 276 Query: 127 HASLPRGGKVTISVQ 141 ++P GG VTI+ + Sbjct: 277 VDAMPTGGVVTIATE 291 >gi|213161648|ref|ZP_03347358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 393 Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 289 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 348 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 349 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 386 >gi|197122071|ref|YP_002134022.1| integral membrane sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196171920|gb|ACG72893.1| integral membrane sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 633 Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+ I ++L LL +Q+I L R+A G Sbjct: 271 LSHELRNPLAPIRSALHLLSHPAASPAQGRRALQVIARQVDHLTRIVDDLLDVTRIARGK 330 Query: 74 TGSVDSLIGLGD-IEQVIEDF--IAVDKRVQVSWTGEKIDLSRER-----AKILLNLFMV 125 I L + I + ED+ + D+R+ + L + A+++ NL Sbjct: 331 IELRRERIDLSEVIARTAEDYRDLLDDRRIALEVELSAGPLRADADPTRVAQVVGNLLSN 390 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 A P GG+VT+ + + + G PE +I + Sbjct: 391 AAKFTPPGGRVTVRAAAREGRAVIRVIDTGVGM-PPELLGRIFEP 434 >gi|299133405|ref|ZP_07026600.1| PAS/PAC sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298593542|gb|EFI53742.1| PAS/PAC sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 534 Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 19/137 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + A+ SLEL+ + +D + + ++M R L F R Sbjct: 161 IAHDFNNLLMAVMGSLELMRKRLPDDPKLHTLLENAMQGARRGSTLTQRMLAFAR----R 216 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------GEKIDLSRERAKI-LLNLFMVA 126 V + + + ++ + + + + + + ++ LLNL + A Sbjct: 217 QDLVQTAVDIPNLIRGMTELLQRSLGPSIDIQTQFPLVIAPALTDANQLEMALLNLAVNA 276 Query: 127 HASLPRGGKVTISVQDS 143 ++P GG++ I+ ++ Sbjct: 277 RDAMPDGGQIVIAAREE 293 >gi|213423581|ref|ZP_03356561.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 177 Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 73 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 132 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 133 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 170 >gi|220915778|ref|YP_002491082.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953632|gb|ACL64016.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 525 Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 22/221 (9%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 S L L + + + H++ +P+ ++ S+ELL + + + +L+ + A Sbjct: 301 SERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVLREASRLDELV 360 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAK-I 118 L+F R A G+VD L D +V D A + + ++ + + Sbjct: 361 TEFLRFARPAPLRPGAVDLASLLEDALRVFTNDPAAAGLVLSREISPAPAACDPDQIRQV 420 Query: 119 LLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK----FTQIVDGNVE 173 + NL A +L RGG++ ++ F+++ +G E+ Sbjct: 421 VWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAERERIFLPFHTTKERG 480 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +Q + + R+ + L Sbjct: 481 TGLGLAVVQ-----RIVDAHGGRVEVRSAPGQGARFTVHLP 516 >gi|326331535|ref|ZP_08197825.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1] gi|325950791|gb|EGD42841.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1] Length = 367 Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 18/201 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS----SMSAIIRLKFMRLAF 71 L S + H++ +PI + LE LD+ + ++ + A R Sbjct: 148 LLSDLAHELRTPIATLQAYLEGLDDGVRQWDQPTRNVLGDQVTRLARLASDLDSVSRAEE 207 Query: 72 GYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEK-IDLSRER-AKILLNLFM 124 G ++ + D + D R+ V G + + R R ++L NL Sbjct: 208 GQLQMTLEPATTAELVRAARDAVTARYEEKDMRIDVIERGPGHVAVDRTRFLQVLTNLLD 267 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SH 179 A PRGG VTI + + G+ + F + G+ T D Sbjct: 268 NARRHTPRGGTVTIDTHAEDDWVTICITDTGDGISQSQLAHIFERFYRGDTARTGDEQGS 327 Query: 180 DIQFYYVILLAHENKIRLLPE 200 I + + RL Sbjct: 328 GIGLTISRAIVEAHGGRLDAY 348 >gi|222479351|ref|YP_002565588.1| multi-sensor signal transduction histidine kinase [Halorubrum lacusprofundi ATCC 49239] gi|222452253|gb|ACM56518.1| multi-sensor signal transduction histidine kinase [Halorubrum lacusprofundi ATCC 49239] Length = 655 Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLA 70 S + HD+ +P+ +LEL E G E+ ++ I +A+ R++ R Sbjct: 457 ASMVSHDLRNPLSVASGNLELYRETG-EESRLETID----TALTRIQELITDLTSLAR-- 509 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 +G L+ + + V D + + + E ++ + ++I + ++ Sbjct: 510 YGIPDENHELVSVSE---VARDAWELIDTRSATLSTEPCTVTGDASQITTLFENLFRNAV 566 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 GG ++V+ EN F ++ G+ P++ + D + I V +A Sbjct: 567 GHGGP-DVTVRVGPLENGFYVEDTGDGI-PPDERDTVFDHGYTTGYSGSGIGLTIVSRIA 624 Query: 191 HENKIRLLPEIIDDHNVVLS 210 + + + Sbjct: 625 QAHSWDVTLTDSTEGGARFE 644 >gi|62182624|ref|YP_219041.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130257|gb|AAX67960.1| sensory kinase in two component regulatory system with HydG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717121|gb|EFZ08692.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 554 Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 450 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 509 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 510 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547 >gi|309792751|ref|ZP_07687196.1| GAF sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225203|gb|EFO78986.1| GAF sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 471 Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 23/213 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 L S L A+ L + + H+I +P+ A NSL L+++ I + I R Sbjct: 242 LQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLAADDPQRAFLTIAQQELGRIAR 301 Query: 64 L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRER 115 + F R S + L + ++++ + + ++ I ++ Sbjct: 302 IITRMRDFYRPTRAELASTSINVLLRETLELVQTHLRHSHINAVTELGSDIPAIIAHADQ 361 Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + + LN+ + A ++P GG + + + + + I + G Sbjct: 362 LRQVFLNIILNACDAMPDGGDLRVRTRMLQARHEAPTTIEID-------ICDTGAGIPPE 414 Query: 175 TIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHN 206 + H + +Y + + II HN Sbjct: 415 HL-PHLFEPFYTTKTHGTGLGLAISAHIISQHN 446 >gi|220916841|ref|YP_002492145.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954695|gb|ACL65079.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 633 Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 17/165 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+ I ++L LL +Q+I L R+A G Sbjct: 271 LSHELRNPLAPIRSALHLLSHPAASPAQGRRALQVIARQVDHLTRIVDDLLDVTRIARGK 330 Query: 74 TGSVDSLIGLGD-IEQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 I L + I + ED+ + D+R+ + L A+++ NL Sbjct: 331 IELRRERIDLSEVIARTAEDYRDLLDDRRIALEVELSAGPLWADADPTRVAQVVGNLLSN 390 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 A P GG+VT+ + + + G PE +I + Sbjct: 391 AAKFTPPGGRVTVRAAAREGRAVIRVIDTGVGM-PPELLGRIFEP 434 >gi|86158632|ref|YP_465417.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775143|gb|ABC81980.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 633 Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 17/165 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+ I ++L LL +++I L R+A G Sbjct: 271 LSHELRNPLAPIRSALHLLSHPAARPAQTRRALEVIGRQVDHLTRIVDDLLDVTRIARGK 330 Query: 74 TGSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 + L ++ + ED+ + D+R+ + L A+++ NL Sbjct: 331 IELRRERVDLAEVVARTAEDYRDLLDDRRIALEVGLPGGPLWADADPTRVAQVIGNLLSN 390 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 A P GG+VT+ + + G PE +I + Sbjct: 391 AGKFTPPGGRVTVRADARGGRAVIRVIDTGVGM-PPELLGRIFEP 434 >gi|229819771|ref|YP_002881297.1| histidine kinase [Beutenbergia cavernae DSM 12333] gi|229565684|gb|ACQ79535.1| histidine kinase [Beutenbergia cavernae DSM 12333] Length = 395 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 22/179 (12%) Query: 6 CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------I 53 FN + DL ++ + + + H++ +P+ A+ LE + + + L Sbjct: 123 AFNAMARDLASVDEARREIVANVSHELRTPVAALRAQLENMVDGVTRPDEEALQAALDQT 182 Query: 54 RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTG---E 107 + L RL G TG + + D + + D + R V+W Sbjct: 183 ERLTRLVTYLLDLSRLEAGATGLHLQDVEVQDFLEEVVDAASHAARAAGRTVAWEVSTSP 242 Query: 108 KIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + R A +++LNL A P GG V + + + + + P Sbjct: 243 EDLHVRADAERLHQVVLNLLANATRHSPPGGTVRVRASQAPIGDEIVIDVVDEGTGIPP 301 >gi|49474327|ref|YP_032369.1| sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239831|emb|CAF26224.1| Sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 829 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 17/156 (10%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-MQLI--RLS 56 M ++ M V L I HD + + AI S + LL+ D LI + + Sbjct: 440 MLEDKIMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNMHRSSDPAYADLINIKNN 499 Query: 57 SMSAIIRLKFMRLAFG-YTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVS-----WTG 106 + A ++ + LAF + L DI +I + + ++++ W+ Sbjct: 500 ANRAAALVQQL-LAFSRKQTLRPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSV 558 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 E S +R ++NL + A ++ GG VTI+ + Sbjct: 559 EVDQASFQRV--IINLVINARDAMSEGGVVTIATNN 592 >gi|89096820|ref|ZP_01169711.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088200|gb|EAR67310.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 591 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 65/210 (30%), Gaps = 22/210 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAFGYTG 75 I HD+ +P+ I LL+ +L IR ++ LAF Sbjct: 362 ISHDLRTPLSTIQGYAHLLESGQYRWTEEELLDMGKMIREKGDYMTALIEDFSLAFQLKN 421 Query: 76 -SVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS-----RERAKILLNLF 123 S+ + D+ +++ + + V ++ G L R ++L NL Sbjct: 422 QSLPHQLKPADLNELVRGIMLKFVNDRTLEDVPFNFEGANTALFIQADIRWFERMLDNLI 481 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV-ESTIDSH 179 P+G +T SV I S+ NG F + G + + Sbjct: 482 YNCIKHNPKGTSITASVSSQGGTAIVSISDNGTGMDEETVRHLFDRYFRGTSTDEQTEGA 541 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + +A + + + V Sbjct: 542 GLGMSIARAIAELHGGSIHVSSVKHRGTVF 571 >gi|126740177|ref|ZP_01755866.1| two-component hybrid sensor and regulator [Roseobacter sp. SK209-2-6] gi|126718632|gb|EBA15345.1| two-component hybrid sensor and regulator [Roseobacter sp. SK209-2-6] Length = 772 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 19/180 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFG-------- 72 I HD + + I + ELL D + I+ ++ + + LAF Sbjct: 412 IAHDFNNLLTVIQGNAELLKVAEDPDHELADAIKEAAQKGGELTRQL-LAFSRKQPLQPE 470 Query: 73 YTGSVDSLIGLGDIE-QVIEDFIAVD-KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 + + L + +++ D I V + W E A L NL M A ++ Sbjct: 471 AVNLSELVPDLAEALDRILGDGIKVHCTQDSGLWPVFADSSQFESA--LFNLAMNARDAM 528 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----HDIQFYYV 186 P GG + IS ++ N S P + +I + S + + ++ Y+ Sbjct: 529 PDGGSIEISCRNRIWTNAASSGAE-TGILAPGDYVEIALKDTGSGMSAENLQRAVEPYFT 587 >gi|116049196|ref|YP_792002.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|296390378|ref|ZP_06879853.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] gi|115584417|gb|ABJ10432.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 858 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74 I HD + + I SLEL+ + LI S+ A L F R Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127 + L ++ + + D I + E + + +LNL + A Sbjct: 560 TLKPQAVALRELVEGMRDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++ GG++ I ++ + + ++G A R+ G + + + + ++ ++ Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675 >gi|110833333|ref|YP_692192.1| two-component sensor histidine kinase [Alcanivorax borkumensis SK2] gi|110646444|emb|CAL15920.1| two-component sensor histidine kinase [Alcanivorax borkumensis SK2] Length = 544 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 15/205 (7%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK- 65 M+L +L L + + H+I +P+ AI+++ +LL + E +Q+IR + Sbjct: 325 MNLASLGRLSATLAHEIRNPLSAINHASDLLLDGDPSQEDQHLLQIIRNHVTRVNGIIHD 384 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 + L+ G + I I++V E + R+ + + ++ +R++++ L Sbjct: 385 VLDLSRRPKGQAERFILPTLIQEVTEQWKIKNTTGRIALHCQPDM-EVRFDRSQLIQVLD 443 Query: 124 MVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + +L GG + D ++ NG F E + + + D Sbjct: 444 NLIGNALRHGGDFCEVSLHCGHHDRTGLPWLRVQDNGQGISF-EARDYLFEPFYTTAKDG 502 Query: 179 HDIQFYYVILLAHENKIRLLPEIID 203 + + Y L H N+ L E Sbjct: 503 NGLGLYLCRELCHANQATLDLEESS 527 >gi|257486825|ref|ZP_05640866.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 394 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSR---ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +R + L R + +I L + ++ Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIRSDIKMLERIRCDHERIAQLLSNLVSNAIS 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI----QFYY 185 G + + V ++F L + PE + I D+ Y Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDAPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390 >gi|254503265|ref|ZP_05115416.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222439336|gb|EEE46015.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 390 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 38/220 (17%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM---SAIIRLKFMR 68 L A+L H+I +P+ I + +LL++ +++ +LI + + R++ Sbjct: 157 LAAMLA----HEIKNPLSGIRGAAQLLEQSAPDEDRALTRLITDETDRIVKLVDRMEVF- 211 Query: 69 LAFGYTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSRER-A 116 S + I L ++++ + A D R+ + + ++++ Sbjct: 212 -------SDERPIERDPVNIHVVLDHVKRLSDSGFARDNRITENYDPSLPPVYANKDQLI 264 Query: 117 KILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171 ++ LNL A ++ G G++ +S S+ + P +F +G Sbjct: 265 QVFLNLIKNASEAI--GDDPDGEIRVSTAFRPG-VRLSVPGTEDKVSLPLEFCVQDNGPG 321 Query: 172 VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 V + H + + + L+ +II DH V+ Sbjct: 322 VPEDLLPHLFEPFITTKTNGSGLGLALVAKIIGDHGGVIE 361 >gi|168699935|ref|ZP_02732212.1| probable sensory transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 266 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 57/236 (24%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR---------LKFMRL- 69 H+I + +G + +L+LL ++ E L R+S +S R L+F RL Sbjct: 30 HEIKNHLGTLSLNLQLLAEDFEDAQSPRERKALERVSRLSGECRKLLDLSNDFLRFARLR 89 Query: 70 -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116 A G VD++I +A + V++ W Sbjct: 90 ELHTRPAALGAV--VDAVID-------FLGPVAKARGVEIKWFSAPEL---PLVCLDCDL 137 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARF----------- 160 + LLNL + A ++P GG +T+ + + ++ + G AR Sbjct: 138 FEQALLNLGLNAFDAMPDGGTLTLIGRSGGRSDDASVKGDEGCGAGARTVCLDVIDTGAG 197 Query: 161 --PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 P ++ + D + + + + + + H + L Sbjct: 198 IEPAALAKLFRPFHTTKPDGNGLGLATTRKIVVAHGGTIEAQSAPGHGTRFTIALP 253 >gi|295699597|ref|YP_003607490.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia sp. CCGE1002] gi|295438810|gb|ADG17979.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia sp. CCGE1002] Length = 375 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 18/217 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67 +L + + HD+ +P+GA+ S E L +++ + ++ +R L Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADEQA-ATVAARVKNSSLRMARMVDQLLNLA 206 Query: 68 RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125 RL G I L + VI++F + Q+ +T ++ + Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASQKSGKQIVFTCTGNTAGAWDTDLVWQAVSNL 266 Query: 126 AHASLPRG---GKVTISVQDSKNEN---IFSLKINGNLARFPEKFTQ-IVDGNVESTIDS 178 +L G G + + V + S + FP F + +GN + + Sbjct: 267 VSNALHHGAPEGDIGVEVDGEAEDCVRLKVSNRGTIPAEVFPHLFKAFVSNGNGARSREG 326 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V +A + + D+ + L + Sbjct: 327 LGLGLHIVQEIARMHGGDVSVVSSDEAGTTFTIELPR 363 >gi|239817394|ref|YP_002946304.1| histidine kinase [Variovorax paradoxus S110] gi|239803971|gb|ACS21038.1| histidine kinase [Variovorax paradoxus S110] Length = 458 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 20/152 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED------EVM-QLIRLSSMSAIIRLKFMRLAFGYT 74 I HD+ +PI + +L+D+ + + M L+R + R G Sbjct: 251 ISHDLQTPITRMRLRTDLMDDAHDREKFRQDLDAMHSLVREGVT-------YARTLHGAA 303 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132 + +E ++ D+ V ++V++ +SR A +IL+NL +L Sbjct: 304 EPPLRIDADALLESMVADYEDVGQQVRLEGKAGAPIVSRPHALRRILMNLI---DNALKF 360 Query: 133 GGKVTISVQDSKNEN-IFSLKINGNLARFPEK 163 G +V + V ++ + S+ NG E Sbjct: 361 GSEVRLRVHAEEDGRLVLSVLDNGPGIPPDEL 392 >gi|291537556|emb|CBL10668.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 572 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58 M KN ++ +L L+ S I H + +P+ + + LL + E+E M + Sbjct: 339 MQKNRHKVDMERQELQMLI-SDISHQVKTPVSNLQMVTDTLLTKPVSEEERMDFL-QGIR 396 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGL-GDIEQVIED--FIAVDKRVQVSWTGE 107 S +L F+ RL G L + Q + + A K + VS Sbjct: 397 SQTDKLDFLFQALVKTSRLETGAIRLEKKDSSLFHTLAQAMSSIVYAAEKKEIAVSVDCP 456 Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 + + S+ ++ L NL A P GGK+++SV + + G Sbjct: 457 ENLIISHDSKWTSEALFNLLDNAVKYTPSGGKISVSVVQWEMYVEVKVTDTGKGISESNQ 516 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I Y + + S +L Sbjct: 517 AAIFRRFYREEEVHDQQGVGIGLYLAREIVTRQGGYIKVVSELRQGSEFSIMLP 570 >gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 473 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 24/229 (10%) Query: 6 CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 + + D VA + H++ +P+ I E + + + E M+L + + RLK Sbjct: 246 RMDAARRDFVAAVS----HELRTPLSIIQGYTEAILDGMVTPEEMKLYLDTIREEVERLK 301 Query: 66 FM--------RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLS---- 112 + RL G + LG+ QV F A + ++ + E S Sbjct: 302 RLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLHFHVEVSPRSLVLG 361 Query: 113 -RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI 167 ++R ++++NL A P GG VT+ V+ + E + +++ G P + + Sbjct: 362 DKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGPGIPPEELPYIWEKF 421 Query: 168 V--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D T + V + + R+ + L Sbjct: 422 YRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKVTLP 470 >gi|240146956|ref|ZP_04745557.1| two-component system histidine kinase [Roseburia intestinalis L1-82] gi|253578643|ref|ZP_04855914.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|283795678|ref|ZP_06344831.1| two-component system histidine kinase [Clostridium sp. M62/1] gi|317499118|ref|ZP_07957397.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|251849586|gb|EES77545.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|257200867|gb|EEU99151.1| two-component system histidine kinase [Roseburia intestinalis L1-82] gi|291077350|gb|EFE14714.1| two-component system histidine kinase [Clostridium sp. M62/1] gi|291524078|emb|CBK89665.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Eubacterium rectale DSM 17629] gi|316893638|gb|EFV15841.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 343 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58 M KN ++ +L L+ S I H + +P+ + + LL + E+E M + Sbjct: 110 MQKNRHKVDMERQELQMLI-SDISHQVKTPVSNLQMVTDTLLTKPVSEEERMDFL-QGIR 167 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGL-GDIEQVIED--FIAVDKRVQVSWTGE 107 S +L F+ RL G L + Q + + A K + VS Sbjct: 168 SQTDKLDFLFQALVKTSRLETGAIRLEKKDSSLFHTLAQAMSSIVYAAEKKEIAVSVDCP 227 Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 + + S+ ++ L NL A P GGK+++SV + + G Sbjct: 228 ENLIISHDSKWTSEALFNLLDNAVKYTPSGGKISVSVVQWEMYVEVKVTDTGKGISESNQ 287 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I Y + + S +L Sbjct: 288 AAIFRRFYREEEVHDQQGVGIGLYLAREIVTRQGGYIKVVSELRQGSEFSIMLP 341 >gi|75909975|ref|YP_324271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703700|gb|ABA23376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 714 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 42/183 (22%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMR 68 L S I HD+ + + I S++LL ++ ++++ +S A +K F R Sbjct: 346 LASGIAHDLNNILTPIMASIQLLALKSSSNDARNHQLLKILEHNSKRAADLVKQILTFAR 405 Query: 69 LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS------WTGEKIDLSRERA 116 GS + L +IEQ++ ++ WT + + Sbjct: 406 ------GSETRGVTLQIEPLLLEIEQILNSTFPKSIKITKHLPPENLWTIQAD--PTQIH 457 Query: 117 KILLNLFMVAHASLPRGGKVTISVQ-------------DSKNENIFSLKINGNLARFPEK 163 ++L+NL + A ++P G ++I + D++ + I P Sbjct: 458 QVLMNLCVNARDAMPGNGTLSIFAENLLVDKNFAKMNLDAEVGPYVVITIADTGFGIPPL 517 Query: 164 FTQ 166 + Sbjct: 518 ILE 520 >gi|114319381|ref|YP_741064.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114225775|gb|ABI55574.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 488 Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 26/221 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAI- 61 + + L A+ L S I H+I +P+G + N+L G D + L+ + Sbjct: 263 VRADRLAAIGRLTSGIAHEINNPLGGMLNALNTYKHHGAPDPFTLKTLSLVERGLLQIRD 322 Query: 62 ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRE 114 L RL G L D+ ++ I K+V + W G + Sbjct: 323 IVGALLVETRL----KGEDLWAEDLEDVRTLLAPDIRR-KQVNLDWDNRLQGPVPLPATP 377 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171 ++L+NL + A + + G+V ++ + ++ +G+ R F + Sbjct: 378 VRQVLINLLLNAVRAAQQRGRVDCRLERVDGWLLITVWNDGDHIPAERMDHLFEPFSGAS 437 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + + R+ E D + L Sbjct: 438 AVGNGLGLWV----TYQIIEQLSGRIEVESRPDDTRFVVQL 474 >gi|326629557|gb|EGE35900.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 552 Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 448 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 507 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 508 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 545 >gi|213969583|ref|ZP_03397719.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] gi|301383357|ref|ZP_07231775.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13] gi|302058811|ref|ZP_07250352.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40] gi|302134500|ref|ZP_07260490.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925679|gb|EEB59238.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] Length = 403 Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++D+ +Q+ I S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDDKTLQVAQHILTSGQRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +RV + ++L R + +I L + ++ Sbjct: 242 PLSIHDAHGLDKTLEHVVSEIQRVHPSRLIRSNIGALELIRCDHERIAQLLSNLVSNAIT 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185 G ++ V + F L + PE + I + Y Sbjct: 302 HGASDSSVEVAAGVLGDRFVLSVANQGDPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIAQAHGGTLDVCSTQEGGTVFTFSMP 390 >gi|161617312|ref|YP_001591277.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366676|gb|ABX70444.1| hypothetical protein SPAB_05163 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 527 Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 423 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 482 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 483 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 520 >gi|302344709|ref|YP_003809238.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] gi|301641322|gb|ADK86644.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfarculus baarsii DSM 2075] Length = 573 Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 19/224 (8%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-K 65 + + L + +L + + H+I +P+ AI +LLD + + R+ + Sbjct: 343 MHAEKLASVGILAAGVAHEIGNPLAAIGGYAQLLDSDDTTPAERREFAGAIAEQTERINR 402 Query: 66 FMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---- 118 +R Y+ + + + + + KR+ + DL+R K+ Sbjct: 403 IIRELLDYSRPSQYLGQPVDVNQAIEAVLNMFFTSKRLSQDNLSIQRDLARNLPKVSLDR 462 Query: 119 ------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +LN+ + A ++ GG++TIS ++ G P+K I D Sbjct: 463 DQLQQVVLNMVINAAQAMAGGGQLTISTREQAGWLRMEFADTGPGI-GPDKLPLIFDPFF 521 Query: 173 ESTIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 + I + R+ + LL Sbjct: 522 TTKPPGQGTGLGLSICDRIISAGGGRIEVASALGKGTTFTVLLP 565 >gi|226357508|ref|YP_002787248.1| histidine kinase [Deinococcus deserti VCD115] gi|226319499|gb|ACO47494.1| putative histidine kinase, classic [Deinococcus deserti VCD115] Length = 456 Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 23/171 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRLKFMRLAFG 72 L + I HD+ +P+ I +LE + + + +L R + L+F+ LA Sbjct: 237 LTADIAHDLNTPLAVISGTLEAILDGTFKPTSERLKRLHQETQHVSQLVNDLRFLSLA-- 294 Query: 73 YTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA------KILL 120 G + L ++E I +A V + + + R ++L Sbjct: 295 DAGELHMNHKLAEVEPFIRGAVATFEEMARQGDVTLETHLKVAGV-RASVDVVRITQVLQ 353 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV 168 NL A A GG+V ++ + + S+K G+ + P F ++ Sbjct: 354 NLLSNALAHTSAGGRVVVTAEVAGQSLTVSVKDTGDGIQPEHLPHVFNRLY 404 >gi|328952443|ref|YP_004369777.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452767|gb|AEB08596.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 13/157 (8%) Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAK- 117 F R L ++ Q + + + +++ T ++ + K Sbjct: 460 FTR----PAPPFKQEADLNELVQDVAAMMGEATQEMGVKIETKLANTLPLVNFDANQMKQ 515 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 +L+NL A + GG +TIS +++ S+ G + PE QI + + Sbjct: 516 VLINLVKNALEATDSGGVITISTSAWEDQVRLSVTDTGKGIQ-PEIMPQIFNPFFTTKKT 574 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ + E D + L Sbjct: 575 GTGLGLAVINKIIEDHNGAITVESSKDRGTTFTISLP 611 >gi|219853149|ref|YP_002467581.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219547408|gb|ACL17858.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 746 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 71/172 (41%), Gaps = 15/172 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56 M + + N+ ++ + +L I HD + + AI ++EL LDE DE M + Sbjct: 503 MQEEL-LNIERLESIGVLAGGIAHDFNNLLSAILGNIELARMDLDEDSPLDERMAEMEQV 561 Query: 57 SMSAIIRLKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110 + A + + L F G + LG + + +F V+ S Sbjct: 562 VLRATALTRQL-LTF-AKGGAPIRRWVHLGPMIKDTAEFTCRGSPVKCSCRVPDDLWITE 619 Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-KINGNLARF 160 + + + +++ N+ + A ++P GG + ++ ++S+ + + G + Sbjct: 620 VDQNQISQVINNIVLNAVQAMPDGGILRVTAENSEYDCGEVVPLAAGRYVKI 671 >gi|329934373|ref|ZP_08284452.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] gi|329305969|gb|EGG49824.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] Length = 478 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 21/216 (9%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIRLSSMSAI----IRLKFM 67 + + H++ +P+ A+ LLD+ E + L+ + ++ Sbjct: 262 AADVSHELRTPLAAMTAVTGLLDDDAAAGHLGPETSEAITLVADETRKLAHLVEDLMEIS 321 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVA 126 R G I LG++ RV V +R + +I + L + Sbjct: 322 RFDAGAARLDLDEIDLGELLHKTLALRHWQDRVTVD--VPGGLRARLDPRRIDVVLANLT 379 Query: 127 HASLPRGG---KVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSH 179 +L GG +V I + + + ++ NG P F + G+ T + Sbjct: 380 GNALRHGGPGARVRIRARTEADRLVLTVHDNGPGIAEDMLPHVFDRFTKGDTARTRSEGS 439 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + A + L + V + L + Sbjct: 440 GLGLAIAAENARLHGGTLTAANSTEGGAVFTLTLPR 475 >gi|307725769|ref|YP_003908982.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia sp. CCGE1003] gi|307586294|gb|ADN59691.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia sp. CCGE1003] Length = 375 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67 +L + + HD+ +P+GA+ S E L + + + ++ +R L Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADQQS-ATVAARVKNSSLRMARMVDQLLNLA 206 Query: 68 RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNL 122 RL G I L + VI++F + + ++ +T + + NL Sbjct: 207 RLQGGRLPLQPRSIELASLCRSVIDEFTSRENGKRIVFTSHGNTAGAWDTDLVWQAVSNL 266 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 A GG V++ V + ++ + LK+ PE F + + S Q Sbjct: 267 VSNALHHGAEGGDVSVEVDGAADDFV-RLKVANRGVIPPEVFPHLFKAFGPNNGGSRSRQ 325 Query: 183 -----FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A + + + + V + L + Sbjct: 326 GLGLGLHIVHEIARMHGGSVSVKSDESAGTVFTIELPR 363 >gi|108757007|ref|YP_635070.1| sensory box histidine kinase TodK [Myxococcus xanthus DK 1622] gi|33113335|gb|AAO48790.1| TodK [Myxococcus xanthus] gi|108460887|gb|ABF86072.1| sensory box histidine kinase TodK [Myxococcus xanthus DK 1622] Length = 501 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 36/219 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----------FG 72 HDI SP+GAI N +L G +++ R S A ++ RL G Sbjct: 275 HDIRSPLGAIMNWSRVLAAGGTDEDAQ---RTSQRIATAAVRIERLTRLLLDFTRTRLMG 331 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD-----------KRVQVSWTGEKIDLSRERAKILLN 121 + L D+ + V Q W +++ A++ N Sbjct: 332 GVAIEPRPVDLKDLVAKVAHEFGVAFPQRTVEVDPKGNTQGVWDPDRL------AQVTSN 385 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177 L A P V ++ + + + + G P F G S Sbjct: 386 LVENALKYSPPETPVRLTARGLRTRVVLEVHNAGRPIPDNLLPHLFEPFRGGPQSSRTLK 445 Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S+ + + V + + + + + L + Sbjct: 446 MSYGLGLFIVREIVQAHGGTIEVRSDEAEGTTFTVTLPR 484 >gi|83311264|ref|YP_421528.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946105|dbj|BAE50969.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 860 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 17/144 (11%) Query: 22 ICHDIISPIGAIHNSLELLD------EVGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGY 73 I HD + +G I +LELL+ E G++ ++ R + L F R Sbjct: 496 IAHDFNNLLGIITGNLELLERTVQGSESGMKRVQTALRSARRGADLTRRLLSFSRQDPKA 555 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERAK-ILLNLFMVA 126 G S + D +++ + + R Q++ D++R + LLNL + A Sbjct: 556 QGK--SRTDIADAISGMQEMVQRSLTKVIEVRTQMAADTWHADINRSEFEDCLLNLCLNA 613 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P+GG +T+ + + ++ Sbjct: 614 RDAMPQGGVLTVEASNVEVDDEMR 637 >gi|161505339|ref|YP_001572451.1| sensor protein ZraS [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866686|gb|ABX23309.1| hypothetical protein SARI_03484 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 487 Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 383 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 442 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 443 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 480 >gi|126729800|ref|ZP_01745613.1| sensory box sensor histidine kianse/response regulator [Sagittula stellata E-37] gi|126709919|gb|EBA08972.1| sensory box sensor histidine kianse/response regulator [Sagittula stellata E-37] Length = 765 Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 13/130 (10%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + AI +LL D+ + + I ++ A + + LAF ++ Sbjct: 404 HDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAALVGQL-LAFSRKQTMQP 462 Query: 80 LI-----GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 + L D+ ++ + R+ + + +R ++ ++NL + A ++P Sbjct: 463 EVLDLRDTLSDLAHLLNRLVGEKVRLTLRHDPALPPVRGDRRQLEQVMMNLVVNARDAMP 522 Query: 132 RGGKVTISVQ 141 GG++ + + Sbjct: 523 EGGEILVETE 532 >gi|256422336|ref|YP_003122989.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037244|gb|ACU60788.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 444 Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 29/215 (13%) Query: 24 HDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG---YTGS 76 HD+ +PI I + L+ E ED+ + I+ + +A ++ + LA Sbjct: 231 HDLRNPIAGIRSVTHLMQEYPYTPEQEDKYLFWIKDACETADQIIEELLLAAKQRESALL 290 Query: 77 VDSLIGLGD-IEQVIEDFIAVDK--RVQVSWTGEKIDLSR----ERAKILLNLFMVAHAS 129 I L + +++V ++++ R + + +R + +++ NL A Sbjct: 291 QTDYISLNEWLQEVRDNWLQQSGFNRAILLELPPEELKARIHTGKMQRVVDNLLHNAAKF 350 Query: 130 LPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQI-------VDGNVESTIDSH 179 P G +TI ++ + S+ G A P F Q ++ + + H Sbjct: 351 TPIEGDITIGMRRHRGGVRISIADTGIGIPEALIPNLFDQFTSSSRKGLNEEPSNGLGLH 410 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L HE+ R+ ++ + S L Sbjct: 411 I-----CKQLVHEHGGRIYVHSQENKGTIFSIDLP 440 >gi|161527757|ref|YP_001581583.1| histidine kinase [Nitrosopumilus maritimus SCM1] gi|160339058|gb|ABX12145.1| histidine kinase [Nitrosopumilus maritimus SCM1] Length = 459 Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 86/215 (40%), Gaps = 26/215 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + +RI HD+ +P+ I N++ ++ E + +I+ ++ + LAF Sbjct: 249 MSARITHDLRNPLTTIKNAVAVMKMKNPEKIKENQQYFDMIQDGVTRMNHQIDEV-LAFV 307 Query: 73 YTGSVDS-LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128 + + +I + + I++ + +++S + + ++ ++ L+N+ + Sbjct: 308 KAKEPERNFVEFSEISNNVLNTISIPENIKISISESNEKIWCDKIQLQNVLINMISNSVQ 367 Query: 129 SLPRG-GKVTISVQDSKNENIFSLKINGNL-------ARFPEKFTQIVDGNVESTIDSHD 180 ++ + G++ I + + ++K NG A F +T DG + + Sbjct: 368 AIGKNQGEIIIDYKIEGEFDKITVKDNGTGIPENLLDAVFEPLYTTKQDGTGLGLVSCKN 427 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + +D+ + + LL K Sbjct: 428 A--------VEAHNGKIYAQNLDEGGAIFTILLPK 454 >gi|330988658|gb|EGH86761.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 394 Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 25/212 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMVAHA 128 S+ +++ +E ++ +RV E+I ER A++L NL Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLV---SN 298 Query: 129 SLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI----Q 182 ++ G + + V ++F L + PE + I D+ Sbjct: 299 AISHGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDAPQAGLGLG 358 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y +A + L + V + + Sbjct: 359 LYIASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390 >gi|297570096|ref|YP_003691440.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296926011|gb|ADH86821.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 909 Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 61/137 (44%), Gaps = 19/137 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72 L + I HD + + I + EL+ + + D++ +++ L A + + LAF Sbjct: 544 LAAGIAHDFNNILTGILSYSELILRGNTSDPALRDDISRILELGRRGAGLTRQL--LAF- 600 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-----SRERAKILLNL 122 + ++ + + +++E+ + R ++V++ + +++LNL Sbjct: 601 -SREQEARMQPLKLNELVENLMKTLGRLIGEDIEVTFNLSPDLGNVNGDPGQLEQVILNL 659 Query: 123 FMVAHASLPRGGKVTIS 139 + A ++P GG + I+ Sbjct: 660 VVNARDAMPTGGTIVIT 676 >gi|225155881|ref|ZP_03724367.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224803431|gb|EEG21668.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 662 Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 13/193 (6%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFG 72 L L+ I HD + + I +EL G DE +Q +R + +A + +R Sbjct: 271 LGTLVGG-IAHDFNNLLAIIKGFIELSLTQGPADETLQRYLREAYNAAQRSIGLVRQILT 329 Query: 73 YTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAK-ILLNL 122 ++ + L ++ Q+I + + ++ R Q+ + + +L+NL Sbjct: 330 FSRKAEVSYSLINLNQLIGEHVQMLAETFPRTIEFRQQLDPALPTFAADPNQLQQVLMNL 389 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 + A ++P GG +T++ + + L+ + G + H + Sbjct: 390 CVNARDAMPDGGALTLATRRVPGSELAVLRADEKQDYVEITVADTGTGMTPE-VREHIFE 448 Query: 183 FYYVILLAHENKI 195 ++ A Sbjct: 449 PFFTTKQARAGTG 461 >gi|330896143|gb|EGH28364.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 726 Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFG-YT 74 I HD + +G+I SLEL+ L S A + + LAF Sbjct: 354 IAHDFNNLLGSISASLELMQLRIAAGRAADIGKYQTLALTSVQRAAALTRRL-LAFSRQQ 412 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHA 128 ++ ++ +ED I V + + + LLNL + A Sbjct: 413 PLDPKVVDPNEVVAGLEDMIRRTMGPDVVVRCDLASVGCISCDINQLENALLNLAINARD 472 Query: 129 SLPRGGKVTIS 139 ++ GG +T+ Sbjct: 473 AMAAGGTLTLR 483 >gi|154246365|ref|YP_001417323.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154160450|gb|ABS67666.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 493 Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 15/186 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 + HD+ +P+ ++ E + + + ++++ I A L F+R T + Sbjct: 272 LSHDLRTPLTSLRLRAEFVADDELREKMLGTIAEIQGMAEASLAFVRA--DATAETTRTV 329 Query: 82 GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 L +E + +D + V + + R A + NL ++ G + + Sbjct: 330 DLSALVESLCDDLAEIGWDVTFEESPKVGCRCRPDAVRRACRNLV---ENAVRYGKRARV 386 Query: 139 SVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 V+ S + + ++ +G F ++ T H + V +A Sbjct: 387 RVERSGDAALIVVEDDGPGIAEELKEQVFAPFFRLESSRCMET-GGHGLGLAIVRTVARR 445 Query: 193 NKIRLL 198 + + Sbjct: 446 HGGDVT 451 >gi|121606714|ref|YP_984043.1| integral membrane sensor signal transduction histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120595683|gb|ABM39122.1| integral membrane sensor signal transduction histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 435 Score = 39.1 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 10/185 (5%) Query: 22 ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRL--KFMRLAFGYTGSVD 78 I HD+ SP+ I + ELL D G+ D+ ++R + A RL F+ LA +D Sbjct: 233 ISHDLRSPLSRIRMAAELLPDAPGVRDKQASIVRN--VQAADRLVGAFLDLARASAEPLD 290 Query: 79 SLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KV 136 + L + ++++ R+++ G A + L + + G V Sbjct: 291 ERVDLAALTRRLLDSGDHEGVRLELLAAGPLWLQPASSAALERLLVNLLDNAAKYGQPPV 350 Query: 137 TISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193 +S+Q + + +++ +G G+ + + + + Sbjct: 351 VVSLQARATQAVLTVRDHGAGIAPGQMDALRKAFFRGSHDRGLPGTGLGLAIAERSVQRH 410 Query: 194 KIRLL 198 + Sbjct: 411 GGEMT 415 >gi|159897348|ref|YP_001543595.1| signal transduction histidine kinase, nitrogen specific, NtrB [Herpetosiphon aurantiacus ATCC 23779] gi|159890387|gb|ABX03467.1| signal transduction histidine kinase, nitrogen specific, NtrB [Herpetosiphon aurantiacus ATCC 23779] Length = 393 Score = 39.1 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 77/225 (34%), Gaps = 25/225 (11%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 L L A L + I H+I +P+ A N+ + +E+++ + +R S++ + R + Sbjct: 171 LQGARLAAVGQLSASIAHEINNPLYAARNA-----LLLLEEDLPEEVRESTVMQLARDQL 225 Query: 67 MRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116 R+A + + L + + + R + D+ Sbjct: 226 TRIAGIIERMRDFYRPMRGEMAPTDLNAVIEETLALAGLHARHNNTMITFTPDIHLPAVV 285 Query: 117 -------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++ LNL + A ++ GG +T++ + + + + G + + + Sbjct: 286 CNADQLRQVFLNLVLNALDAMTNGGTLTVTTEAATSFVTIEICDTGTGI-PDDIRAHLFE 344 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ ++ + +L Sbjct: 345 PFFTNKPNGTGLGLPISAHIVTQHGGQIEVDSTVGVGSTFRVVLP 389 >gi|320102387|ref|YP_004177978.1| histidine kinase [Isosphaera pallida ATCC 43644] gi|319749669|gb|ADV61429.1| histidine kinase [Isosphaera pallida ATCC 43644] Length = 365 Score = 39.1 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 20/162 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73 ++ ICH++ + + I N +L D+ + I ++ A + G Sbjct: 52 MIAGGICHELNNLLTPILNYAKLGLRSDDPAYRTRAFEKILEAAQQAA---QITGGVLGL 108 Query: 74 TGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA------KILLN 121 D+ ++E + ++ RV + + + R R ++L N Sbjct: 109 ARPSGETRVPTDLAALVEQVLRLTRKDLMEHRVTLEYHARE--RPRARVNPAQIQQVLFN 166 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L + A ++P+GG++ + V + L + + Sbjct: 167 LVINARQAMPQGGRMLVQVGLDATGRMAELVVADSGVGIDPA 208 >gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049] gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049] Length = 726 Score = 39.1 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 9/195 (4%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSA-IIRLKFMRLAFGYTG 75 S + HD+ +P+ LELL E + + + + L R G + Sbjct: 529 ASVVSHDLRNPLTVARGQLELLREESDSEHIDAIDTAHQRMDTLIDDLLTLARD--GASP 586 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + ++ L Q + K + ++ + + +++ + ++ GG Sbjct: 587 ASPVVVDLEQFVQTCWQNV-DTKAATLRTDIDRP-IRADESRLRQLFENLVRNAVEHGGD 644 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195 +SV + + F ++ NG PE+ + + ++ V +A + Sbjct: 645 -DVSVTVGELADGFYVEDNGAGIPEPER-GDVFSAGYSTAVEGTGFGLSIVKQVADAHGW 702 Query: 196 RLLPEIIDDHNVVLS 210 + D Sbjct: 703 TVRVVSGADGGARFE 717 >gi|309792129|ref|ZP_07686601.1| sensor histidine kinase PAS domain-containing protein [Oscillochloris trichoides DG6] gi|308225670|gb|EFO79426.1| sensor histidine kinase PAS domain-containing protein [Oscillochloris trichoides DG6] Length = 663 Score = 39.1 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 20/163 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII- 62 S + +L + I H+I +P+ I S +LL D+ + + +Q I S+ A + Sbjct: 441 QSAKIASLGVMAGGIAHEIRNPLAIIAASAQLLEDHPDDPELRQQCVQKIVTSAQRASLI 500 Query: 63 ---RLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112 LKF R + ++ L V + + D V Sbjct: 501 IEQLLKFSHPPQERFRPLNIHATLEETFNLLNHQMLVSQVILRRDFSPDV---PRLYGNP 557 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++ NL + A ++P+GG++T++ + S G Sbjct: 558 ELLQQVFTNLILNACNAMPQGGQLTVTTRLSGEHVELRFTDTG 600 >gi|167044201|gb|ABZ08882.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [uncultured marine microorganism HF4000_APKG5H11] Length = 795 Score = 39.1 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 19/158 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQLIR----LSSMSAIIR 63 L + + HD+ +P+GAI N LL + + +++I S+ S Sbjct: 580 LSAGMAHDLRNPLGAIRNVTYLLKNELVTKGVFEGNAKLNTCIEIIDNQVNKSNQSITDL 639 Query: 64 LKFMRLAFGYTGSVDSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILL 120 + F +L V++ + L + + +D + + + E+ ++ + Sbjct: 640 MDFAKLK--EATLVETNLDVVLAQALETLSQRDDIDLLKNIEPNIQPVMADGEQLQRVFV 697 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 NL A ++P GG +TI+ ++ + G+ Sbjct: 698 NLANNAQEAMPDGGSLTIAAKNVNGTVQITFSDTGDGI 735 >gi|313672158|ref|YP_004050269.1| pas/pac sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312938914|gb|ADR18106.1| PAS/PAC sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 825 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 20/216 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 L+ I HD + + AI+N + + E+E + + ++ KF+ Sbjct: 467 LVAGGIAHDFNNILSAINNYMLVAKMSFGENEKVVEFANNVITLCGTGKFLANKLLVLSK 526 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------AKILLNLFM 124 I L +E + I+ R +S T K D+ + A+I NL + Sbjct: 527 GGEHISL--VETDLYSLISETARFVLSGTNIKYDVKKADYYCYGFVDQNLVAQIFHNLLI 584 Query: 125 VAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQ-IVDGNVESTIDS 178 A ++P GG++ I ++ + + + PE I + Sbjct: 585 NAKQAMPEGGEIKIYIELDDSFLIFEKPSIKITVEDTGPGIPEDVIDKIFQPFFTTKQHG 644 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y V + ++ R+ + + L Sbjct: 645 SGLGLYIVKAIVEKHDGRITVQSTKGKGATFTINLP 680 >gi|262197459|ref|YP_003268668.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262080806|gb|ACY16775.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 597 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 15/162 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70 A + + + HD+ PI A+ +++EL E + L+ + RLK RLA Sbjct: 358 ARVAAGLAHDLRMPIEAVRSAVELSAERPDDRASRYLLSKVRSRDLPRLKRFVDDLNRLA 417 Query: 71 F-GYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSRERA-KILLNLF 123 G G + ++ I + + +V L + + LLNL Sbjct: 418 HEGNLGLEYEPVTPLELLSEIRTELEAAPKWGGVSFEVVGDASPATLDKNLVRRALLNLA 477 Query: 124 MVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 A + L GG V + ++D ++E + L++ P Sbjct: 478 GNAAEACLELGPGGTVYLEMEDREDETLIDLRVRDTGVGIPA 519 >gi|210633429|ref|ZP_03297777.1| hypothetical protein COLSTE_01690 [Collinsella stercoris DSM 13279] gi|210159153|gb|EEA90124.1| hypothetical protein COLSTE_01690 [Collinsella stercoris DSM 13279] Length = 387 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 28/212 (13%) Query: 22 ICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLA 70 I H + +P+ +I S EL L E G E+++ +RL LK R+ Sbjct: 158 ISHQLKTPLTSIAISTELIRDRLAERGDAPEIVERLRLVQRLQGRVEDLVAALLKLARID 217 Query: 71 FGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 G V + + ++ + V D VD + + L N+ Sbjct: 218 AGVIKLVKAPVDARELVRKSFEPLAVAFDIAGVDFETSIQPGAGYEGDLAWSVEALENIL 277 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHD 180 P GG V + + ++ G A P F + G ++S + Sbjct: 278 KNCMEHTPAGGTVRVRATEDILACRIRIEDTGPGIDEADLPHIFERFYRGKRADAVESSE 337 Query: 181 IQFY-------YVILLAHENKIRLLPEIIDDH 205 + L L + D Sbjct: 338 VAPVGVGIGLSLAKSLVAAQGGTLTADNARDA 369 >gi|196234723|ref|ZP_03133533.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196221213|gb|EDY15773.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 286 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 10/133 (7%) Query: 20 SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFG 72 +R+ HD+ + + I SLE+ ++ + + S++ A ++ F R A Sbjct: 44 ARMAHDLNNLLSPILMSLEVFRPHLTKTNHQALLDIAKKSTVRAAELVRHVLAFSRGAEE 103 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHAS 129 G +D + +I V + V+V + + LLNL A + Sbjct: 104 EGGEIDPRAIVEEIGAVAQSTFPGSIGVRVDAPKHMPRILGNATQIHRALLNLCTNARDA 163 Query: 130 LPRGGKVTISVQD 142 +P GG +T+ + Sbjct: 164 MPEGGTLTLRASN 176 >gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158] gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158] Length = 1416 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 27/204 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------LKFMRL 69 + H++ +P+ IH ELL E + ++R +++AI R L R Sbjct: 1049 LSHELKNPLNLIHVKAELLSLA-PETRELDVVRD-AVNAIQRSVMSQAKIIDDLLDMSRA 1106 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAK---ILLN 121 G L + + + D D V + + + + + IL N Sbjct: 1107 RTGKLTLDRVPTDLAALLRTLVDACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWN 1166 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS 178 L A P GG VT+++ + + GN P+ F +V + + Sbjct: 1167 LLSNALKFTPAGGTVTLTLAREGDGARVDVADTGNGIAPDFLPKIFDMFSQASVPRSRST 1226 Query: 179 H--DIQFYYVILLAHENKIRLLPE 200 H I V LA + R+ Sbjct: 1227 HGLGIGLSLVKHLAEMHGGRIEAH 1250 >gi|154141|gb|AAA27148.1| ORF 1 [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 208 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 104 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 163 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 164 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 201 >gi|320161337|ref|YP_004174561.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995190|dbj|BAJ63961.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 727 Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 77/227 (33%), Gaps = 35/227 (15%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM 67 D V+L+ H++ +P+ I +ELL + +QL++ L+ Sbjct: 493 DFVSLVS----HELRAPLTNISGGIELLLLRSKRLPRDATQTLQLVQ------SEILRLT 542 Query: 68 RL--------AF--GYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEK--IDLSRE 114 R A G + I + + +V++ + ++ W DL + Sbjct: 543 RFVESILDLSALDAGKMPLFLAPISVHSVIEVVKRQFSHTPNAGRIRWEIPDKFPDLLAD 602 Query: 115 RAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169 + LF + ++ G++ + +++ ++ +G P FTQ Sbjct: 603 EQALTSVLFHLLDNAMKYAPEGEIVVKAWSKEDKGFLEIRDHGQGIPEEDLPLLFTQFFR 662 Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + TI H + Y V L ++ + + + L Sbjct: 663 SRMSDSQTIYGHGLGLYMVQRLLEAMNGTIMVRNLPEGGACFTCSLP 709 >gi|153006891|ref|YP_001381216.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030464|gb|ABS28232.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 551 Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 16/152 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAI----IRLKFMRLAF 71 S + H++ +P+ I NS+ +L+ E +I + L R+A Sbjct: 200 SLLSHELRNPLAPIRNSIYVLEHAEPAGEQARRARAVIERQTDHLTKLVDDLLDVTRIAK 259 Query: 72 GYTGSVDSLIGLGD-IEQVIEDF----IAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123 G + + L + ED +A + + + + + ++ L NL Sbjct: 260 GKIALRRARLDLATVARRTGEDLRSIVVARGLELVLELPSAPVLVDGDETRLGQVLGNLL 319 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKING 155 A P GG++ +S + ++ G Sbjct: 320 QNAAKFTPAGGRIVLSARAGGGVAEIRVRDTG 351 >gi|107102721|ref|ZP_01366639.1| hypothetical protein PaerPA_01003787 [Pseudomonas aeruginosa PACS2] Length = 482 Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 283 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 333 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 334 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 388 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + +S++D + + +G PE+ + + + Q Y + Sbjct: 389 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 444 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 445 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 478 >gi|213612380|ref|ZP_03370206.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 297 Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 193 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 252 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 253 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 290 >gi|332982073|ref|YP_004463514.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699751|gb|AEE96692.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 485 Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 25/223 (11%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSS----MSA 60 S L AL L + I H++ +P+ + +++L+ + + MQ +I+ Sbjct: 255 SERLAALGQLVAGIAHEMRNPMAIVKATVQLMQKQYKDSSEMQQYLDVIKEQVDRQDKIV 314 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKIDL 111 L F R + S+ I L ++ + + + I + ++ Q+ D Sbjct: 315 KELLDFSR----PSKSLWEDISLVELLKSVITFTRPYMDQYHIELSEKYQIDLPLIIADG 370 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 R + ++ +N+ + A S+P+GG++ ISV + S G+ E I + Sbjct: 371 ERLK-QVFVNIIINAVQSMPKGGQLMISVYSDEQNVYASFADTGSGI-ADEDIENIFNPF 428 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + D + + + Sbjct: 429 YTTKYSGTGLGLAISHNIIAMHGGTIAVTRSKDGGSIFTVSIP 471 >gi|297158052|gb|ADI07764.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 524 Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 17/206 (8%) Query: 24 HDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 H++ +P+ AI E+L+E + +QL+ + + + R G Sbjct: 271 HELRTPLTAITAVTEVLEEETDALDPMIAPAVQLVVSETRRLNDLVENLMEVTRFDAGTA 330 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133 V + + D D A V++ E+ ++R + ++ + L + +L G Sbjct: 331 RLVLDDVDVADQVTACIDARAWLDAVELD--AERGIMARLDPRRLDVILANLIGNALKHG 388 Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188 G V +SV+ ++ + ++ +G P F + + + + + Sbjct: 389 GSPVRVSVRPEDDDLLIRVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALE 448 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 AH + + + D V + L Sbjct: 449 NAHIHGGEITADNHPDGGAVFTLRLP 474 >gi|153004814|ref|YP_001379139.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp. Fw109-5] gi|152028387|gb|ABS26155.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter sp. Fw109-5] Length = 752 Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRL-KF 66 L AL + + + H+I +P+ AI +++ LD G + E ++++ + +F Sbjct: 479 RLAALGEMSAGLAHEIRNPLAAIKGAVQFLDPSKLPGDDREFLEIVIEEVNRLNGVVTQF 538 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRERA 116 + + + + D+ V+E + + W + + Sbjct: 539 LDY----SRPLKPALAPTDVNDVLERTFRLLQAEVPQSISVELALAEWLPRVNADAEQLK 594 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++ LNL + A ++P GG++ +S + +++E F + + +F G E Sbjct: 595 QVFLNLALNAFQAMPAGGRLVVSTRLTRDELAFWREGSRKADLVEVRFRDSGPGVPEEAR 654 Query: 177 DSHDIQFYYV 186 D + FY Sbjct: 655 DRIFVPFYTT 664 >gi|86157053|ref|YP_463838.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773564|gb|ABC80401.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 526 Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 23/222 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 S L L + + + H++ +P+ ++ S+ELL + + + +L+ + A Sbjct: 301 SERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAAPDGDERRLLDIVLREASRLDELV 360 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAK-I 118 L+F R A GSV+ L D +V D AV V S ++ + + Sbjct: 361 TEFLRFARPAPLRPGSVELSGLLDDALRVFAHDPAAVGLLVARSLDPAPAACDPDQIRQV 420 Query: 119 LLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEK----FTQIVDGNV 172 + NL A +L RG ++ +S F++ +G E Sbjct: 421 VWNLLRNAAQALGDGRGARIEVSCGVEDGGAWFAVGDDGPGIPAAELERIFLPFHTTKER 480 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +Q + + R+ + L Sbjct: 481 GTGLGLAVVQ-----RIVDAHGGRVEVRSTPGEGARFTVHLP 517 >gi|240142066|ref|YP_002966576.1| putative sensor histidine kinase [Methylobacterium extorquens AM1] gi|240012010|gb|ACS43235.1| putative sensor histidine kinase [Methylobacterium extorquens AM1] Length = 485 Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 68/173 (39%), Gaps = 14/173 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 L +L L S + H+I +P+G + N+++ L + + + L+ ++ Sbjct: 257 RLASLGRLASGMAHEINNPLGGLFNAIDTLKAHGERPDVRRRSLDLVERGLKGIRDVVRA 316 Query: 67 MRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERA---KILL 120 + L D++ +I I + ++W + ++ +++L Sbjct: 317 TLVTHRADRDQRELGPEDLNDLQLLIGPEIRRRGLI-LTWDNAVRSPVAVPAVAMRQVVL 375 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 NL + A + P G+VT++ + + ++ + + + ++ G E Sbjct: 376 NLLLNAAQATPADGEVTLTAR-AVDDGLLVVTVEDTGGGMDADGHDLLSGRRE 427 >gi|222054628|ref|YP_002536990.1| histidine kinase [Geobacter sp. FRC-32] gi|221563917|gb|ACM19889.1| histidine kinase [Geobacter sp. FRC-32] Length = 367 Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 24/225 (10%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRL 64 S L AL L + + H+I +P+G+I + E+L + E ++++ + + Sbjct: 145 SERLSALGELSATLAHEIRNPLGSIKGTTEILKDSFAPGEKKYEFLEILLKEADRLNRVV 204 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA-- 116 + G V DI + + +A V+V +I + Sbjct: 205 ENF---LGLASPVRVEQNRCDIMLELRELVAFTTAEALSMEVKVRLEPAEIPPIKGDTEK 261 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP-EKFTQIVD 169 ++ LNL M A + GG+V IS S+N+ + L N E +I Sbjct: 262 LRQVFLNLLMNALQATGTGGEVVISAVGPLHTSENQPVIELSFADNGQGIDQEMLERIFQ 321 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + +L Sbjct: 322 PFFTTKKGGTGLGLAITQKIVESHGGTIRVTSTKGKGTTFTVILP 366 >gi|78186231|ref|YP_374274.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78166133|gb|ABB23231.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 689 Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 19/220 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEV-----MQLIRLSSMSAIIR 63 L A+ L S + H+I +P+ AI + LD EDE ++ + Sbjct: 464 KLTAMGELASGVAHEIRNPLNAIGLIAQRLDIEFTPKEDEAEFRHLLRTVVSEVHRLNAI 523 Query: 64 LK-FMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSRERA 116 ++ F+R A V D D V+E A DK V S +G + R++ Sbjct: 524 IQRFLRFARPPALEVVPTDLAAFAADYRAVLEGE-ASDKGVAFSLSGAPGTVALIDRDQM 582 Query: 117 K-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 + +LLN+ A + RGG V++SV + + G P++ ++ + + Sbjct: 583 QQVLLNIVRNAVEATSRGGAVSVSVSADAGSAVIEVADTGKGT-TPDERHRMFNLYFTTK 641 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + + + + V L+ + Sbjct: 642 DDGTGMGLSIASQIVQSHGGTIEVNDRPGGGTVFRILVPQ 681 >gi|323132509|gb|ADX19939.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 554 Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 450 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 509 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 510 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547 >gi|325109823|ref|YP_004270891.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970091|gb|ADY60869.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1194 Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 16/155 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIRLKFMR 68 + +A+L H++ +P+ I + L+LL EV++L ++ L R Sbjct: 826 EFLAMLA----HELRNPLAPIRSGLDLLRIGEQRPEVLELMNNQLQHLVRLVDDLLDVSR 881 Query: 69 LAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120 + G + L + ++ V + F + ++ + V L+ + ++ + Sbjct: 882 ILRGKVELRKEQVELRELITRTVDAVNDQFTSRNQELTVRLPDAACWLNGDSVRLSQVIH 941 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL A P GKV+IS++ ++ S++ +G Sbjct: 942 NLLSNASKYTPPDGKVSISLERTERFLRISVRDSG 976 >gi|126724683|ref|ZP_01740526.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacterales bacterium HTCC2150] gi|126705847|gb|EBA04937.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacterales bacterium HTCC2150] Length = 448 Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 18/139 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMR--LAFGY- 73 L R H+ + + + +LE L+ E+++ + + +A R ++ +R LA+ Sbjct: 221 LSGRFAHEFNNLLTVVSGNLEFLESDLQNPEMLECLSD-AQTATARGVQLVRDLLAYSQR 279 Query: 74 TGSVDSLIGLGD-IEQVIED---------FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 T I + + V E+ + D + + W + + LLNL Sbjct: 280 TRLNPVNIDVNNLAATVCENCLPMLQKGVHLETDLQDDL-WQINADQ--KSTSSALLNLI 336 Query: 124 MVAHASLPRGGKVTISVQD 142 + AH ++P GG + +S ++ Sbjct: 337 LNAHDAMPEGGNLCVSTKN 355 >gi|197122816|ref|YP_002134767.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172665|gb|ACG73638.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 451 Score = 38.7 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 12/210 (5%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFG 72 L+ S+I H++ +P+GAI +++ + + ++++ L L+F Sbjct: 229 ELMSSQISHELKNPLGAIKALVQISARGSSDGDTCERLKVVSSEVERMREILDGY-LSFS 287 Query: 73 YTGSVDSLIGLG------DIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNLFMV 125 L ++ V++ A + R + LLNL Sbjct: 288 RPLECLQREDLSLGELADEVLSVLQGRAAAAGVGLHRRGDARVEADPRRLKEALLNLVAN 347 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A + RG +V + V D +++ G P ++ + + Sbjct: 348 AVEASRRGDRVEVLVADHGGTVEVAVRDTGRGM-PPAVVARLGTPFFTTRDQGTGLGVLL 406 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ L D + L + Sbjct: 407 ARRAFVQHGGTLEYASAPDAGTTATGTLPR 436 >gi|26990257|ref|NP_745682.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985205|gb|AAN69146.1|AE016548_5 sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 553 Score = 38.7 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 15/179 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLKFMRLAFG-YT 74 I HD + + +I +LEL + ++ + ++L R ++ A ++ + LAF Sbjct: 181 IAHDFNNLLASILGALELAGQRLVQQRLADTTQLLELSRHNAQRAAALVQRL-LAFSRQQ 239 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK----ILLNLFMVAH 127 V + + + + D I+ V + + R A+ LLNL + A Sbjct: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRIDAQQLENALLNLCINAR 299 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG ++I + + + + ++ RF + + + ++ ++ Sbjct: 300 DAMPLGGTLSIGCANVEVQGAEARQLGLAAGRFLRIRVEDTGMGMSKAVMQRALEPFFT 358 >gi|298530458|ref|ZP_07017860.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509832|gb|EFI33736.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 765 Score = 38.7 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTIS 139 L + +++ + V+ ++ V + + + +I++NL A ++PRGG + + Sbjct: 469 LKEAMKLLGATVPVNIQLNVDIGDDPPMVVADPVWIHQIVMNLCTNALQAMPRGGNIDVG 528 Query: 140 VQDSK 144 ++ + Sbjct: 529 LKGAD 533 >gi|223939798|ref|ZP_03631669.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891574|gb|EEF58064.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 893 Score = 38.7 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 10/130 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS-MSAIIRLKFMRLAFGYTGSV 77 I HD+ + + I S+ LL ++ E E ++ + S+ A + + + A G G Sbjct: 534 IAHDLNNVLAPILMSIALLKKMHPEPETTEVLETLEGSANRGADMIKQVLSYARGVQGDR 593 Query: 78 ---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLP 131 L ++E+++ + R+Q L + +ILLNL + A ++P Sbjct: 594 ITISVARLLEEMEKIMGETFPKSIRIQKRMEPSVACLVGDPTQLHQILLNLCVNARDAMP 653 Query: 132 RGGKVTISVQ 141 GG + +S + Sbjct: 654 DGGTLVLSAE 663 >gi|332669312|ref|YP_004452320.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] gi|332338350|gb|AEE44933.1| integral membrane sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] Length = 331 Score = 38.7 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 22/201 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLA-FGYT 74 +R+ H++ +P+ AI ++ + +E L+ S+ + + +LA G Sbjct: 103 ARLDHELKNPVTAIRAAVAGAGDDAGPEERARSLATLVSQSTRLSALVADLRKLAELGTQ 162 Query: 75 GSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDLSRERAK--------ILL 120 D + L + + + A R V + + Sbjct: 163 EIEDEDVDLAQVVRDAVEDVCAQADAAGAPRPAVDVALPTAPWPLPHVRGDVDLLYVAVY 222 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177 NL A P G ++ + D + + G E F ++ G + Sbjct: 223 NLLANAVKFSPPGTRIEVRGTDDDGTVLVEVADAGPGIPQDEVGVVFDELARGRDARGLP 282 Query: 178 SHDIQFYYVILLAHENKIRLL 198 I V ++A + + Sbjct: 283 GSGIGLALVRVVAQRHGGDVT 303 >gi|86156725|ref|YP_463510.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773236|gb|ABC80073.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 711 Score = 38.7 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 16/153 (10%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 LL I HD + + I ELL E G DE IR ++ + + L F G Sbjct: 349 LLAGGIAHDFNNLLTGILGYAELLGEPGTAADEAAAGIRQAARRGAALTRQL-LGFARRG 407 Query: 76 SVDS-LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAH 127 + L + + + + + DKR+ + + +++LNL + A Sbjct: 408 KYQQVPVDLHALVREVSELLERTLDKRIAIRHQLAAGTAVVRGDPDQLQQVVLNLAVNAR 467 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++P GG +T L G AR Sbjct: 468 DAMPSGGTLTF------ETAEVELDAEGTRARP 494 >gi|297539308|ref|YP_003675077.1| integral membrane sensor signal transduction histidine kinase [Methylotenera sp. 301] gi|297258655|gb|ADI30500.1| integral membrane sensor signal transduction histidine kinase [Methylotenera sp. 301] Length = 437 Score = 38.7 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 7/152 (4%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ + + HDI +P+ + S+E+L + G +I+ + I +F+ G G Sbjct: 231 TLILAGVSHDIRTPLARLRLSVEMLPDEGCGSLKNGMIQDIADMDNIIHQFLDFVKGVEG 290 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-RERA--KILLNLFMVAHASLPR 132 +I + + Q + D R V + + A ++L NL + Sbjct: 291 EPTQMIDINTLLQAVHDRQLRAGRDLVVQLAPTYFIPIKPLAMQRLLDNLV---GNAYAY 347 Query: 133 G-GKVTISVQDSKNENIFSLKINGNLARFPEK 163 G G+ I+ + + + S+ NG Sbjct: 348 GKGQARIAGKVTAEHIVISVFDNGPGIPESHL 379 >gi|224585713|ref|YP_002639512.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470241|gb|ACN48071.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 465 Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|241204986|ref|YP_002976082.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858876|gb|ACS56543.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 721 Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 13/159 (8%) Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 D +Q R + L F R I L ++ + D + +S Sbjct: 366 DGAIQGARRGAALTQRLLAFAR----QQDLQVKPIDLAELVSGMNDLLRRSVGSSISIET 421 Query: 105 ----TGEKIDLSRERAKI-LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 T + + ++ LLNL + A ++P GG ++IS+++ + G Sbjct: 422 ILPATLPPALIDANQLELALLNLAVNARDAMPDGGTLSISLREEQVPGDDGALGEGAYLV 481 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198 G T+ F+ L + L Sbjct: 482 L--AVADSGTGMDAETLKKAVDPFFSTKELGKGTGLGLS 518 >gi|296388323|ref|ZP_06877798.1| putative two-component sensor [Pseudomonas aeruginosa PAb1] gi|313108506|ref|ZP_07794507.1| putative two-component sensor [Pseudomonas aeruginosa 39016] gi|310881009|gb|EFQ39603.1| putative two-component sensor [Pseudomonas aeruginosa 39016] Length = 482 Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 283 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 333 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 334 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 388 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + +S++D + + +G PE+ + + + Q Y + Sbjct: 389 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 444 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 445 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 478 >gi|16762284|ref|NP_457901.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143772|ref|NP_807114.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213580344|ref|ZP_03362170.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855079|ref|ZP_03383319.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20140997|sp|Q8Z332|ZRAS_SALTI RecName: Full=Sensor protein zraS gi|25512555|pir||AE0931 two-component system sensor protein STY3712 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504588|emb|CAD09471.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139407|gb|AAO70974.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 465 Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|320451054|ref|YP_004203150.1| signAl transduction histidine kinase containing a receiver domain [Thermus scotoductus SA-01] gi|320151223|gb|ADW22601.1| signAl transduction histidine kinase containing a receiver domain [Thermus scotoductus SA-01] Length = 723 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 26/214 (12%) Query: 24 HDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYT 74 H+I +P+ ++ +LEL L+ G+ +E +L+ + + + R++ ++RL G Sbjct: 99 HEIKNPLMSVLGALELTLEVEGLPEEAKELLSI-AEKSARRIQDLLNKAREYLRLGQG-V 156 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124 + L + + + + R + ++ L + A + +LN+ Sbjct: 157 RLKSERVDLKALLLQVAEEMRPLARRK--GIALRLILPKREAWVYGDREWLYQAVLNVVN 214 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181 A P GG+V + + + ++ G E F + ++ + Sbjct: 215 NAIKYTPEGGRVAVRLLVGPEQYGIAVSDTGPGIPKEEQERVFEPFYRASTRGEVEGTGL 274 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + + LL + Sbjct: 275 GLALVKRVLEAHGGEVRLRSRLGQGSTFLLLLPR 308 >gi|254445702|ref|ZP_05059178.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260010|gb|EDY84318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 571 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 28/171 (16%) Query: 17 LLCSRICHDIISPIGAIH---NSLEL-LDEVGIEDEVMQLIRLSSMSA----IIRLKFMR 68 LL + I H+I +P+ I +SL L +E ++ Q+I+ L F Sbjct: 354 LLSAEIAHEIRNPLTVIKLLFSSLNLQYEESDPRNKDKQVIKEKFNQLEEIVSKVLSF-- 411 Query: 69 LAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGE-KIDLSRERA--------K 117 + + + + L +I++++ D + K Q+ E + L + R + Sbjct: 412 -----SKAPEGIFTLWEIDELVADTCLLVRHKMRQLKIELEHQPALQKLRVNGNKGQLQQ 466 Query: 118 ILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLK-INGNLARFPEKFTQ 166 +LLNL + A ++P GG++TIS +S + F++ I + PE + Sbjct: 467 VLLNLIINASDAMPNGGRLTISTTHESNEKGKFAILYIEDTGSGIPENLVE 517 >gi|190891775|ref|YP_001978317.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190697054|gb|ACE91139.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 577 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 13/146 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + I A R + + + GS Sbjct: 369 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 427 Query: 81 IGLG-DIEQVIEDF-----IAVDKR--VQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 D+ ++ IAV + +++ +S + A + +LNL + A A+ Sbjct: 428 HPSRVDVASLLRGMADILEIAVGAKCHIKLELDAGLPVVSLDAALLEQSVLNLCLNASAA 487 Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155 +P GG + I +++ + S+ NG Sbjct: 488 MPTGGVIAIGATATRDTLLISVTDNG 513 >gi|78222608|ref|YP_384355.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] gi|78193863|gb|ABB31630.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter metallireducens GS-15] Length = 547 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 79/218 (36%), Gaps = 23/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGY 73 L +R+ H+I +P+ AI S +L+ + E ++ + + LA+ Sbjct: 327 LSARMAHEIRNPLAAISGSAQLIAQGDGIPEADRELFAIVLREADRLNGLITDF-LAY-A 384 Query: 74 TGSVD--SLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL----SRERAKILLNLFM 124 S + L D+ I + D+R V++ E + ++ NLF+ Sbjct: 385 RPSQPEKGPVNLTDLVGEIVSLVTPDRRFEQVRIINRVEPDFTLPIDPDQFRQVFWNLFV 444 Query: 125 VAHASLPRGGKVTISVQ-------DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTI 176 A ++ GG +T+ + D + + + + + + + E ++I + S Sbjct: 445 NAAEAMSEGGTITVDAERIDEIRSDGEPRSAYRITVADDGSGMNQETISRIFEPFYTSKA 504 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E + + + Sbjct: 505 SGTGLGLATVYRIIEAHGGRITVESAEGTGTIFIIFIP 542 >gi|84500414|ref|ZP_00998663.1| sensor histidine kinase [Oceanicola batsensis HTCC2597] gi|84391367|gb|EAQ03699.1| sensor histidine kinase [Oceanicola batsensis HTCC2597] Length = 413 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 29/222 (13%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK---- 65 + VA+L HD+ +P+ A+H L LD+ + D+ +L+ R S + Sbjct: 195 EFVAVLG----HDLRNPVAALHAGLRQLDKEPLTDKARKLLPFMRSSVHRMNDLIDNIML 250 Query: 66 --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI---DLSRERAK 117 RL G S L D + D I ++ +Q+ ++ D R A+ Sbjct: 251 HAKARLGGGIRVSATPDAPLNDAITQVIDEIRAASPEQEIQLDLAFDRPVSCDAPR-VAQ 309 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNV 172 + NL A G + + S E S+ GN PE+ + + G Sbjct: 310 AISNLVSNAVRHGTTGAPIAVYGAASGGEITISVANRGN--PVPEEVRRRLFQPFQRGPQ 367 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y +A + + E DD + L Sbjct: 368 PEG-EGLGLGLYIAFSIAAAHGGHVEIE-SDDGLTTFTLKLP 407 >gi|146278457|ref|YP_001168616.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145556698|gb|ABP71311.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 670 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 21/200 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L S + HD+ + + AI S L+ + G + Q I ++ A ++ L+ G Sbjct: 288 LASGLAHDLNNLLAAIGGSATLIRDLGPGAAEAHAQRILSATEQAGALVRRF-LSLGQRQ 346 Query: 76 SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128 S S I L + ++ + R+ ++ E + + + +++LNL + A Sbjct: 347 SNRSRIDLRALLHEAADLVRAGLRNRTRLTLALPPEPVWVEADPTDILQVVLNLVINARD 406 Query: 129 SL----PR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDS 178 ++ PR G ++T+++ + + + + + + + + Sbjct: 407 AIATAPPRETGYEITLAL-GAPDPAQLAGPFAAGAPGAGQGYVALTVSDNGPGIAPETQA 465 Query: 179 HDIQFYYVILLAHENKIRLL 198 Q Y+ A + L Sbjct: 466 RVFQPYFSTKGAAGTGLGLA 485 >gi|323699810|ref|ZP_08111722.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459742|gb|EGB15607.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 729 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSAIIR 63 L A + RI H+I +P+ I S + L G DE LI R Sbjct: 510 RLAAWREVARRIAHEIKNPLTPIKLSAQRLQRKYGGRIGEGTFDECTGLIVNQVE----R 565 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDL---SRER- 115 L+ M F + + D+ + + A R ++ W D+ +R Sbjct: 566 LQNMVTEFSAYAKLPEVQPKPDLLVPLLEEVTAMFANTHR-RIKWNLSASDIGEFPFDRE 624 Query: 116 --AKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFP 161 K+L+NLF A +L RGG+V I+ ++ ++ + N P Sbjct: 625 GIRKVLINLFTNAAEALKDTRGGEVRITAVHDRDAGTVTISVADNGPGLP 674 >gi|187251604|ref|YP_001876086.1| integral membrane sensor signal transduction histidine kinase [Elusimicrobium minutum Pei191] gi|186971764|gb|ACC98749.1| Integral membrane sensor signal transduction histidine kinase [Elusimicrobium minutum Pei191] Length = 604 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 18/147 (12%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65 L A+ + S I H+I +P+ I NS L+ +E +I A ++ Sbjct: 389 RLAAIGEMASIISHEIRNPLAVISNSTHLIRAIVGEENPKLKRQFDIIDSEVRQANRIVE 448 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------K 117 GY I D+ ++D + Q + D + + Sbjct: 449 ---EVLGYARDRKQNITRVDLNSYLKDIVTTHPLPQGIRIVQNYDETHPAVNIDSEEIKQ 505 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK 144 + NL A +P GG + I + K Sbjct: 506 AVRNLITNAFDVMPDGGTLNIGTKAGK 532 >gi|6467531|gb|AAF13178.1|AF181079_1 sensor kinase homolog [Rhodobacter capsulatus] Length = 419 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 19/134 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 51 HDFNNLLTAISGHCDLLMLRHDKGDPDYTDLDQISQNANRAASLVGQLLAFSR----KQT 106 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 +I L D + + ++V ++ T + R+ ++++NL + A Sbjct: 107 LKPRIIDLRDTLSDLTHLLNRLTGEKVVLTLTHDPNLAPIRADKRQLEQVIMNLVVNARD 166 Query: 129 SLPRGGKVTISVQD 142 ++P GG++ I ++ Sbjct: 167 AMPGGGEIRIETEN 180 >gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 930 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 68/159 (42%), Gaps = 20/159 (12%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSMSAI----IRL 64 + +A+L H++ +P+ I + LL ++ E + ++I + L Sbjct: 559 EFLAMLA----HELRNPLAPIATAAHLLSTGTLDPEGLSRLSEVISRQAGHMTRLIDDLL 614 Query: 65 KFMRLAFGYTGSVDSLIGLG----DIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKIL 119 R+ +G + + + + + + + A + + + + ++ +S +R +++ Sbjct: 615 DVSRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLV 674 Query: 120 LNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKING 155 L V + ++ P GG++T+ V + + ++ NG Sbjct: 675 QVLANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNG 713 >gi|90423035|ref|YP_531405.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105049|gb|ABD87086.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 853 Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 18/183 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 MD+V L I HD + + AI + + LL+ D Q I +A +R Sbjct: 468 MDMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 527 Query: 69 LAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKI 118 LAF ++ + L D+ ++ I ++ + W + E+ Sbjct: 528 LAFSRRQTLRPQVLHLGDALSDLTMLLRRLIGEKVKLDLVHGRDLWPVKVDVSQFEQV-- 585 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 ++NL + A ++P GGK+T+ + + L G P + +I + + I + Sbjct: 586 IVNLAVNARDAMPAGGKLTVRTANVSAQEAERLSYKGM---PPADYVRIDVSDTGTGIPA 642 Query: 179 HDI 181 + Sbjct: 643 EIV 645 >gi|288959502|ref|YP_003449843.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288911810|dbj|BAI73299.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 459 Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 10/150 (6%) Query: 6 CFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59 FN L + R I HD+ +PI + EL+++ ++ ++ + Sbjct: 235 AFNRMQARLARFVADRTQMLAAISHDLRTPITRLRLRAELVEDPEMQRRMLADLDEMEAM 294 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R L D ++ + +D + + + R + Sbjct: 295 ISATLAFARD--DAQREPRGRFDLADLLQSLCDDRVDAGHHALYAGPPHAVAEGRP-VAL 351 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI 148 L + ++ GG T+ + + Sbjct: 352 RRALANLMDNAIKYGGGFTVRLDREADAIG 381 >gi|194471314|ref|ZP_03077298.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358832|ref|ZP_02659463.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457678|gb|EDX46517.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331651|gb|EDZ18415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 465 Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 710 Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 25/173 (14%) Query: 20 SRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIRL----KFM 67 +++ H++ +P+ + L+LL + + E +Q + S + R+ + Sbjct: 478 AKVSHELRNPLHTLQGFLKLLINESNKVGNLNERQTEALQEVENSVNTLKKRIVDLIELN 537 Query: 68 RLAFGYTGSVDSLIGLGDI---------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAK- 117 RL G DI + +E V+ + + ++ + +R + Sbjct: 538 RLERGQFTINPVRTNPIDIIVTTCSQQRSKALES--EVELIIDIPDQLPQVIVDEDRIRQ 595 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +L NL A + PRGGK+ +S + +++ + + G E + +I D Sbjct: 596 VLTNLIENAMKATPRGGKIVVSAEQQQDQILIHVTDTGKGI-ASELWEKIFDP 647 >gi|119383347|ref|YP_914403.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans PD1222] gi|119373114|gb|ABL68707.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans PD1222] Length = 680 Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 I HD + + AI +LL D+ + + I ++ A ++ + LAF ++ Sbjct: 313 IAHDFNNLLTAITGHCDLLMLRHDKADPDYADLDQISQNANRAAALVRQL-LAFSRKQTL 371 Query: 78 D-SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129 ++ L D + + +R+ +++ + R+ ++++NL + A + Sbjct: 372 KLQIMDLRDTLSELTHLLNRLVGERIVLTFDHDPALRMVHADRRQLEQVIMNLVVNARDA 431 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +P GG +TI + + A P Sbjct: 432 MPEGGDITIC----TDNVRLETRAELGRAVLPAG 461 >gi|267996474|gb|ACY91359.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 493 Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 389 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 448 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 449 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 486 >gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] Length = 377 Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 28/167 (16%) Query: 20 SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA----IIRLKFMRL 69 S + H++ +P+ I++ +E+ ++ ++ E +QLIR + + L +R+ Sbjct: 153 SMVSHELRTPLTVINSYIEMFEDGMLGDLTDVQKEKLQLIRSQTDTMIQLVNDMLDILRI 212 Query: 70 AFGYTGSVDSLI--GLGDIEQVIEDFIAVDKRV------QVSWTGEKIDL-----SRERA 116 GS + L +E++I IA R+ +++ E+ + ++ Sbjct: 213 -----GSRRLRLKKELSSMEELIRSVIASLSRLAALKEHTITFRCERANTLIECDPKKIM 267 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 ++L NL A P G++ + + + S++ NG R +K Sbjct: 268 QVLSNLLTNAIKYTPDRGQIEVVLGGDAENVLVSIRDNGIGIREEDK 314 >gi|186680835|ref|YP_001864031.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463287|gb|ACC79088.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 367 Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVE 173 ++ NL PRGGKV + ++ ++ + + G+ P F + G+ + Sbjct: 260 RVFTNLLSNGINHTPRGGKVEVVLEGYSSDQVVKILDTGSGFTEEELPHLFERFYQGHSD 319 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + Y + + + E + L Sbjct: 320 RHVSGSGLGLYLTRQIIAAHGGTIWAENRSPRGAMFGFRLP 360 >gi|304393874|ref|ZP_07375799.1| integral membrane sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294073|gb|EFL88448.1| integral membrane sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 447 Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 19/203 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 HD+ +PI ++ E+LD+ + D ++ + + A L + R G + + + Sbjct: 251 HDLRTPITSLRIRAEMLDDDALRDPMISTLDDMRVMADGLLGWGR----SGGEREDSVDV 306 Query: 84 GDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 D+ ++ D + VS + I + + + + +L GG + V Sbjct: 307 -DLTALVRDLATSNGNASAVSIQLDDITVRGRPVALRRAIGNLVDNALRHGGSAEVVVAQ 365 Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY-----------YVILLAH 191 N + S+ NG P+ + V + Q + Sbjct: 366 DNNRAVVSVSDNGPG--LPDDMLEAVFEPFIRGDVARSPQEAGEDGGTGLGLSIARTIVR 423 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + L+ E + ++ L Sbjct: 424 AHGGTLVLENRESGGLIARIELP 446 >gi|167724407|ref|ZP_02407643.1| sensory box sensor histidine kinase [Burkholderia pseudomallei DM98] gi|167898977|ref|ZP_02486378.1| sensory box sensor histidine kinase [Burkholderia pseudomallei 7894] Length = 245 Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 49 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 105 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 106 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 165 Query: 149 FSLKING 155 +++ G Sbjct: 166 IAIEDTG 172 >gi|108763090|ref|YP_633515.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus DK 1622] gi|15076966|gb|AAK82997.1|AF285783_2 histidine kinase HsfB [Myxococcus xanthus] gi|108466970|gb|ABF92155.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus DK 1622] Length = 527 Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 60/212 (28%), Gaps = 26/212 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSS----MSAIIRLKFMRLAFGYTG 75 H+I +P+G I +L+ + + LI S+ LKF R Sbjct: 312 HEINNPLGGILAFAQLMSRDAGRSDADLESLGLIEESALRCKRIVESLLKFSRH---SRV 368 Query: 76 SVDSLIGLG----DIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126 L D + + V+++ + A+++LNL Sbjct: 369 EDRRPFDLSKCVEDAAVLFRAQLKSMPTVELTLGLADGLPKVYGDPGQLAQVVLNLLQNG 428 Query: 127 HASLP-RGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQ 182 SLP R GK+ + + F++ G P F + Sbjct: 429 LQSLPTREGKLKLVTGREGDRCFFAVTDTGTGIEEKHLPRIFEPSFTTKAPGEGTGLGLS 488 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y + ++ + + L Sbjct: 489 IAY--RIVQDHGGSFHVDTEVGEGSCFTVFLP 518 >gi|327538937|gb|EGF25575.1| protein containing ATP-binding region, ATPase-like domain [Rhodopirellula baltica WH47] Length = 468 Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 33/174 (18%) Query: 24 HDIISPIGAIHNSLELLDEVGIED----------EVM-------QLIRLSSMSAIIRL-- 64 HD+ SP+ I ++E++ + + D M LI S + +R Sbjct: 20 HDLKSPLAGIAATMEVIRDGSLGDVTPSQAEFLQAAMTQCEYIDSLIGELSRAERLRSGT 79 Query: 65 -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117 + R+A + D + + +K++ + W G + + + Sbjct: 80 PRVRRVA-------TKRTAIRDAVDLSTRSLLSNKQIDLHWDGAEPNSIDTLVDSTILSR 132 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +L NL + A + G + I V+D N + + + Q + G Sbjct: 133 LLTNLIINAERASKSGSPILIRVEDDLNRGVAVWSVIDRGRGISPQRLQQLSGT 186 >gi|153004403|ref|YP_001378728.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027976|gb|ABS25744.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 394 Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 22/209 (10%) Query: 24 HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS---SMSAIIRLKFMRLAFGYTGS 76 HD+ +P+GA+ L D+ + + +++R + + L R+ G Sbjct: 158 HDLRNPLGAVVAGATLALRRSDDPKVRGHLERVLRSARRMARMVEQLLDVSRVRLG--RG 215 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------AKILLNLFM-VAH 127 + + D+ +++ A + E R A++L NL Sbjct: 216 IPIVRDASDLCELVRQAAAETEPTHRQHRFELRLPPRCEGEWDRDRLAQVLTNLLANACE 275 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH--DIQFYY 185 S P G VT++++D + ++ G PE + D + D + Y Sbjct: 276 HSEP-GSVVTVALEDGPERAMVTVHNPGPPI-PPELLPSVFDAFASGSEDGRGLGLGLYI 333 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + + + D S L Sbjct: 334 AREIALAHGGDISVDSADGRGTTFSVTLP 362 >gi|86158415|ref|YP_465200.1| signal transduction histidine kinase NtrB [Anaeromyxobacter dehalogenans 2CP-C] gi|85774926|gb|ABC81763.1| signal transduction histidine kinase, nitrogen specific, NtrB [Anaeromyxobacter dehalogenans 2CP-C] Length = 457 Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 20/225 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQ-LIRLSSM 58 + + A+ + + + H+I +P+ + +LELL E D MQ +R + Sbjct: 224 VRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSADARHSDIVTEMQHQVRRLTH 283 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SR 113 + L F R A S D L + +I + D +++ Sbjct: 284 TMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQ-SRDGTIELVPELSPGLPAVLADPS 342 Query: 114 ERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 + ++ LN+ + A ++ RGG +T+ + ++ G + QI Sbjct: 343 QLEQVFLNICLNACQAMIATRRGGVLTVRSRVGDGTVSVEVEDTGPGI-PADLRAQIFKP 401 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + E+ + + + L++ Sbjct: 402 FFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQQ 446 >gi|328543954|ref|YP_004304063.1| phosphate/phosphonate ABC transporter [polymorphum gilvum SL003B-26A1] gi|326413698|gb|ADZ70761.1| Phosphate/phosphonate ABC transporter [Polymorphum gilvum SL003B-26A1] Length = 759 Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 79/214 (36%), Gaps = 19/214 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66 L +L L S + H+I +P+G + +++ L ++ + + + L++ + Sbjct: 535 KLASLGRLSSVMAHEINNPLGGLLTAVDTLRAHGEKPDVRNASLDLLQRGLEGIAGVVHA 594 Query: 67 MRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAKIL 119 + + D + ++ + + + + S + Sbjct: 595 ALATYRPERHSRPIARSDFEDAKVLLMPELRRRGQHLDCQIALPDGMSCACPSGPIRQAT 654 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DS 178 +NL + A A+ P GG V ++V + + ++ G P +I+ G + ++ Sbjct: 655 INLLLNASAATPDGGVVGMTVALERGRLVVEVRDQGGG--LPRHARRILVGEPDGSLPTG 712 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + + V +A E + I D V SA+ Sbjct: 713 SGLGLWIVRQIADEIGAAIE---IADREPVGSAV 743 >gi|163795227|ref|ZP_02189195.1| two-component hybrid sensor and regulator [alpha proteobacterium BAL199] gi|159179625|gb|EDP64154.1| two-component hybrid sensor and regulator [alpha proteobacterium BAL199] Length = 517 Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 26/184 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + +G I SL+LL E Q + +++A +R L F R Sbjct: 155 IAHDFNNLLGVIIGSLDLLTETDGLARSHQELVDVALNAALRGSKLTKQLLAFAR----R 210 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSR-----ERAKILLNLFMVA 126 + + D + +RV VS + L+NL + A Sbjct: 211 QSLDPEEFDVNERVAQTLDLLRRTLGERVVVSTVLSPELAPAFADASQFDSALVNLAINA 270 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDSHDIQ 182 ++P GG++ I + + ++ + + N+ P ++ + + + + + Sbjct: 271 RDAMPSGGRLVIETANQQLDDGY---ASSNVDVTPGRYVMLAVTDTGTGMPPEVAARAFE 327 Query: 183 FYYV 186 ++ Sbjct: 328 PFFT 331 >gi|297568592|ref|YP_003689936.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296924507|gb|ADH85317.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 601 Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 24/222 (10%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS-------MSAII 62 LVAL + + + H+I +P+ +I LL G + RL S Sbjct: 382 RLVALGKMAAGVAHEIRNPLSSIKGLATLLASRAGQNPPESETARLLVGEVERVNRSISE 441 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERA--- 116 L F R + L + +A D + V++ + Sbjct: 442 LLDFAR----PQPLNRRPVDLPTLLGNSLQLVAADAQSLGVELKLQPPATEFPPVPVDAD 497 Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNV 172 ++LLNL++ + ++P GG++ +++ + + +K++ PE +I D Sbjct: 498 RLTQVLLNLYLNSLQAMPTGGRLEANLEYRPEQQVVRIKVSDTGQGIAPEILPRITDPYF 557 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + V + ++ ++ D ++ L Sbjct: 558 TTKPEGSGLGLALVQKIIDDHGGKMEFTSQPDQGTTVTITLP 599 >gi|39995579|ref|NP_951530.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982342|gb|AAR33803.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 419 Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 13/214 (6%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIR 63 L L + + + H++ +P+ I +LL E +DE + L A Sbjct: 204 RLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVTEAIRLESLVSDL 263 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120 L + R G G + + + +++ + E + A++ +L Sbjct: 264 LAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLATRGNEARLEQLIL 323 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL ++P GG +T+ + S+ +G+ P +I + Sbjct: 324 NLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGI-APHDRERIFTPFFTTKARGSG 382 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + V L Sbjct: 383 LGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 416 >gi|91976673|ref|YP_569332.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91683129|gb|ABE39431.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 705 Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLFMVAHASLPRG 133 + LGD D + R ++ + D E LLNL + A ++P G Sbjct: 409 VDLGDSVTKFADVLRQSVRSDIAIEIDPPDEPIIVQIDPNEFEIALLNLALNARDAMPDG 468 Query: 134 GKVTISVQDSKNENIFSLKINGNLARF 160 G++TIS++ +N ++ G+ A Sbjct: 469 GRITISIRTETLKNFGPRRLTGDYAVL 495 >gi|220904042|ref|YP_002479354.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868341|gb|ACL48676.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 673 Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 25/222 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEV-----MQLIRLSSMSAI 61 L AL L + + H++ +P+ I + L G +E + + Sbjct: 446 RLSALGHLAAGVAHEVRNPLSTIK-GVALYIAKRMLPGGREEEAAQRMIDEVDRLDRVVS 504 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDLS-----R 113 L+F R G + ++ L ++ D R + V Sbjct: 505 ELLEFARP--GAINTAEA--DLAEVIGRALRLAEADMRSRHIHVVLDVPPGLPPVRVNTE 560 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGNV 172 + LLNLF+ A ++ GG++ + + F + + N I Sbjct: 561 RLTQALLNLFLNAAQAMGEGGELRVGARLCSGGQTFCITVADNGPGIARDIQAAIFTPYF 620 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + + + + L Sbjct: 621 TTKPSGTGLGLAIVHQIVEGHGGNVSVTSAPGRGTEFTLELP 662 >gi|116494458|ref|YP_806192.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] gi|116104608|gb|ABJ69750.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] Length = 336 Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 65/206 (31%), Gaps = 32/206 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I H + +P+ A +N LE++ E +L+ + A + + + LA + Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182 Query: 82 GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122 + Q +D + D ++ + W + + L+N+ Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADNQLTIDWQVSPDLMLHVNPALVKEALVNV 242 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179 A GG++ I + G A P F + G + ++ Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205 I + EN RL E + Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327 >gi|194446308|ref|YP_002043421.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197263097|ref|ZP_03163171.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194404971|gb|ACF65193.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197241352|gb|EDY23972.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 465 Score = 38.7 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|259415800|ref|ZP_05739720.1| periplasmic sensor signal transduction histidine kinase [Silicibacter sp. TrichCH4B] gi|259347239|gb|EEW59016.1| periplasmic sensor signal transduction histidine kinase [Silicibacter sp. TrichCH4B] Length = 442 Score = 38.7 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 70/199 (35%), Gaps = 17/199 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ S + HD+ +P+ + SL +L++ E +Q ++ L F R G T Sbjct: 239 TLMLSGVSHDLRTPLTRLKLSLSMLEDDDAEPM-LQDVKEMEDMVNAFLDFSR---GVTT 294 Query: 76 SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 S +E+ ++++ K V + T + A + L + ++ G Sbjct: 295 SAMEETDPCALVEEAVDNWTRQGKTVHLVETVGNRTVPLRAAAVRRALDNLISNAVRYGT 354 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---------FYY 185 + +SV + + +++ + PE + +D Q Sbjct: 355 RARVSV--AVMQKSLRIRVEDDGPGIPEDLRG-DAMRPFTRLDPARNQDLGTGVGLGLAI 411 Query: 186 VILLAHENKIRLLPEIIDD 204 V +A + L ++ Sbjct: 412 VADIARAHGGTLRLGTSEE 430 >gi|207859351|ref|YP_002246002.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206711154|emb|CAR35528.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 465 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|218781351|ref|YP_002432669.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762735|gb|ACL05201.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1011 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 19/122 (15%) Query: 64 LKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----A 116 L F R G L ++ + F+ +V+ ++ + + E Sbjct: 705 LTFAR------GGAPVKESASLAELLKECVGFVLSGSKVRCEYSVPEDLMPAEVDASQIR 758 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 +++ NL + A ++P+GG + IS Q+ + ++ NL P ++ ++ + I Sbjct: 759 QVIQNLVINATQAMPQGGILYISAQNVE------VEEKDNLPLPPGQYVEMSIRDQGEGI 812 Query: 177 DS 178 Sbjct: 813 PP 814 >gi|305432053|ref|ZP_07401220.1| sensor histidine kinase [Campylobacter coli JV20] gi|304445137|gb|EFM37783.1| sensor histidine kinase [Campylobacter coli JV20] Length = 427 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA 60 +L + L +++ + I H++ +P+ I SLE+L + ++DE + +L+ S + Sbjct: 218 ISLKNTQLASVISA-ISHELKNPLSVIDLSLEMLKDENLKDEKLKNELLEKISRQS 272 >gi|298504597|gb|ADI83320.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 411 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 13/214 (6%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIR 63 L L + + + H++ +P+ I +LL E +DE + L A Sbjct: 196 RLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVTEAIRLESLVSDL 255 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120 L + R G G + + + +++ + E + A++ +L Sbjct: 256 LAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLATRGNEARLEQLIL 315 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL ++P GG +T+ + S+ +G+ P +I + Sbjct: 316 NLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGI-APHDRERIFTPFFTTKARGSG 374 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + V L Sbjct: 375 LGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 408 >gi|238913751|ref|ZP_04657588.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 465 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|296120700|ref|YP_003628478.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296013040|gb|ADG66279.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 568 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 23/186 (12%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIR----LK 65 + S +CH+ +P+ +I ELL + I++ Q I L Sbjct: 329 AEFVSS-VCHEFKTPMSSIKAYAELLRDGEIDEAEEQQKILVFIDEQVDRLSRLVDNMLN 387 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRE-----RAK 117 R+ G + + + + D + V + + ++ Sbjct: 388 LARIESGVIRVQRKDVEINRLLKSALDVVTPQAAAKSQTVESLLSDLYIPAHVDEDLFSQ 447 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVES 174 ++NL A P GGK+++ + ++ + ++ G A P F + V Sbjct: 448 AVVNLLSNAVKYTPAGGKISLKSRLEEDRVLIEVRDTGMGIPAASLPRLFERFY--RVPE 505 Query: 175 TIDSHD 180 + + Sbjct: 506 NMKAAA 511 >gi|149173454|ref|ZP_01852084.1| sensor histidine kinase [Planctomyces maris DSM 8797] gi|148847636|gb|EDL61969.1| sensor histidine kinase [Planctomyces maris DSM 8797] Length = 480 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 68/181 (37%), Gaps = 25/181 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LL + I H++ +P+ I + ++LL+ ++ + + + +R ++ Sbjct: 249 LLAAGIAHEVGNPLAGISSLVQLLNRHNNDEYTNKRLDEVDAQLRRIQRILRELIDFSRP 308 Query: 77 VDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRER-AKILLNLFMV 125 + I ++I + + + K + + + + R++ ++ LNL + Sbjct: 309 ATTERNRCQINELITESLNISKYYKRKKGKNIITRFAEDLPVVQVVRDQLVQVFLNLILN 368 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A + G + I+ + + + S+ +G R +K + Q Y+ Sbjct: 369 AMDATEEGESIEITTEARGGQIVISIHDDGEGIREEDK--------------ARLFQPYF 414 Query: 186 V 186 Sbjct: 415 T 415 >gi|57167921|ref|ZP_00367061.1| histidine protein kinase PhoR VC0720 , putative [Campylobacter coli RM2228] gi|57021043|gb|EAL57707.1| histidine protein kinase PhoR VC0720 , putative [Campylobacter coli RM2228] Length = 427 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA 60 +L + L +++ + I H++ +P+ I SLE+L + ++DE + +L+ S + Sbjct: 218 ISLKNTQLASVISA-ISHELKNPLSVIDLSLEMLKDENLKDEKLKNELLEKISRQS 272 >gi|218890617|ref|YP_002439481.1| putative two-component sensor [Pseudomonas aeruginosa LESB58] gi|218770840|emb|CAW26605.1| probable two-component sensor [Pseudomonas aeruginosa LESB58] Length = 473 Score = 38.7 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 325 --DTDIHENVESVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + +S++D + + +G PE+ + + + Q Y + Sbjct: 380 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469 >gi|205354425|ref|YP_002228226.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274206|emb|CAR39224.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 463 Score = 38.7 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 359 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 418 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 419 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 456 >gi|15598387|ref|NP_251881.1| two-component sensor [Pseudomonas aeruginosa PAO1] gi|9949310|gb|AAG06579.1|AE004743_2 probable two-component sensor [Pseudomonas aeruginosa PAO1] Length = 473 Score = 38.7 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 325 --DTDIHENVESVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + +S++D + + +G PE+ + + + Q Y + Sbjct: 380 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469 >gi|330874339|gb|EGH08488.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 430 Score = 38.3 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 228 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 278 Query: 72 GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +++ + D RV + + A + + NL Sbjct: 279 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 336 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D+ + + G PE+ + V + + Q Sbjct: 337 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 390 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + + ++ L + Sbjct: 391 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 427 >gi|83814249|ref|YP_446168.1| sensory box sensor histidine kianse/response regulator [Salinibacter ruber DSM 13855] gi|83755643|gb|ABC43756.1| sensory box sensor histidine kianse/response regulator [Salinibacter ruber DSM 13855] Length = 905 Score = 38.3 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIE-DEVMQLIRLSSMSAIIR----LKFMRLAFG 72 I HD+ + + I +++L D+ + D+ + +I+ S+ L F R G Sbjct: 533 IAHDLGNLLVPITLGVKVLKRRVDDTDDKVDQTLSMIQKSAERGSDMVEQVLAFARGVEG 592 Query: 73 Y-TGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 LI E E F + V R D ++ + ++L+NL + A Sbjct: 593 ERVALQPELIVEEVEEMTTETFPEDVEVHIRTDADLRPVVGDATQIQ-QVLMNLCVNARD 651 Query: 129 SLPRGGKVTISVQD 142 ++P GG +T+ ++ Sbjct: 652 AMPDGGTLTVEARN 665 >gi|148264720|ref|YP_001231426.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146398220|gb|ABQ26853.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 544 Score = 38.3 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 24/176 (13%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR 63 + L A+ L +RI H+I +P+ ++ S++L+ + G + +++ +++ + Sbjct: 318 KADRLAAIGELSARIAHEIRNPLASVSGSVQLIAQGGGIAAGDKKLLDIVQRETERLNAL 377 Query: 64 LKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKID---LSRERA 116 + LA+ V + L + +A D +RV++ + R++ Sbjct: 378 ITDF-LAYARPRRPVKVTMNLKGFMGNLVALLATDSRFERVKILNDCPDDLSVEVDRDQF 436 Query: 117 KILL-NLFMVAHASLPRGGKVTISVQ---------DSKNENIFSLKINGNLARFPE 162 + + NL M A ++P GG V+I E ++ NG + Sbjct: 437 QQVFWNLLMNAAEAMPAGGTVSIKASAAHKRRHLKGPGGEVRIAVTDNGAGMVPED 492 >gi|254236152|ref|ZP_04929475.1| hypothetical protein PACG_02117 [Pseudomonas aeruginosa C3719] gi|126168083|gb|EAZ53594.1| hypothetical protein PACG_02117 [Pseudomonas aeruginosa C3719] Length = 473 Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 81/214 (37%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 325 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + +S++D + +G PE+ + + + Q Y + Sbjct: 380 DNALKYGERARLSLEDGPEAVALHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469 >gi|326318057|ref|YP_004235729.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374893|gb|ADX47162.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1026 Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 71/205 (34%), Gaps = 19/205 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR----LSSMSAIIRLKFMRLAFGY 73 + H++ +P+ AI + ++L E + +I+ + L R+ G Sbjct: 678 LSHELRNPLAAIAAASDVLSTGAGGPETTHQALGIIQRQTQHLASMMRDLLDVSRVLRGS 737 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 L + + + + ++V R ++ + ++ + +I ++NL A Sbjct: 738 AVLARRPTDLAERVRSVRESLSVGGTMRRHTWTFDLQPAWINGDATRIEQVIVNLLQNAI 797 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQ 182 P G + +SV +E + + G+ P F G ++ + Sbjct: 798 KYTPEGRSIDVSVSCPGDEAVLRVADGGDGIDEDLLPHIFDLFRQGERMLDRQDGGLGVG 857 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 V L ++ + +D V Sbjct: 858 LTLVQHLVEQHGGVIDVATSEDGTV 882 >gi|218886355|ref|YP_002435676.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757309|gb|ACL08208.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 505 Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 13/165 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAII----RLKFMR- 68 L S + H+I +P+G + L G++++ ++I + + R Sbjct: 273 LASGVAHEINNPLGGVILCFRNLTAGGMDEDARRQHEKVIDDGLEKIRRIVGELMHYARP 332 Query: 69 --LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILLNLFMV 125 LA T D + + V V+ + + + +++LNL + Sbjct: 333 SPLAVSETRIEDLFASSRALVEFTLQRKGVALVSHVAQDVPPLFIDPDKMGQVILNLVLN 392 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 ++P GG +T+ + +NE ++ G PE +I D Sbjct: 393 GADAMPAGGTLTLDARIVENEVRITVSDTGPGV-APEHRERIFDP 436 >gi|116051180|ref|YP_789989.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] gi|115586401|gb|ABJ12416.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] Length = 473 Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 325 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + +S++D + + +G PE+ + + + Q Y + Sbjct: 380 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469 >gi|301062897|ref|ZP_07203480.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300443014|gb|EFK07196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 524 Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 66/167 (39%), Gaps = 22/167 (13%) Query: 18 LCSRICHDIISPIGAIHNS----LE---LLDEVGIEDEVMQLIRL---SSMSAIIRLKFM 67 L S I H++ +P+ I + LE L + ++ ++ S L F Sbjct: 299 LTSGIAHELNNPLNNITLTAHMLLEDYQSLSDDERKEMAEDIVGEAKRSKHIISNLLDFA 358 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL-----SRERAKIL 119 R +GS + L ++ + + A + +++ + S++ ++ Sbjct: 359 R----ESGSQLEPLDLKELLRDTINLAANQIKLSGIRIDFQATDNLPRIHGDSQQLRQVF 414 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 LNL + A + +G ++ + V + + N ++K+ + + P+ Sbjct: 415 LNLILNAIDASKKGDRIQVMVLPADDPNYVAVKVIDSGSGIPDHILG 461 >gi|294508093|ref|YP_003572151.1| sensory box sensor histidine kianse/respons regulator [Salinibacter ruber M8] gi|294344421|emb|CBH25199.1| sensory box sensor histidine kianse/respons regulator [Salinibacter ruber M8] Length = 941 Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIE-DEVMQLIRLSSMSAIIR----LKFMRLAFG 72 I HD+ + + I +++L D+ + D+ + +I+ S+ L F R G Sbjct: 569 IAHDLGNLLVPITLGVKVLKRRVDDTDDKVDQTLSMIQKSAERGSDMVEQVLAFARGVEG 628 Query: 73 Y-TGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 LI E E F + V R D ++ + ++L+NL + A Sbjct: 629 ERVALQPELIVEEVEEMTTETFPEDVEVHIRTDADLRPVVGDATQIQ-QVLMNLCVNARD 687 Query: 129 SLPRGGKVTISVQD 142 ++P GG +T+ ++ Sbjct: 688 AMPDGGTLTVEARN 701 >gi|99081320|ref|YP_613474.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040] gi|99037600|gb|ABF64212.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040] Length = 442 Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 17/199 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ S + HD+ +P+ + SL +LD+ E +Q ++ L F R G T Sbjct: 239 TLMLSGVSHDLRTPLTRLKLSLSMLDDEEAEPM-LQDVKEMEAMVDAFLDFSR---GVTT 294 Query: 76 SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 S +E+ +E++ K V + T + A + L + ++ G Sbjct: 295 SAMEETDPCKLVEEAVENWTRQGKTVHLVETVGNRRVPLRAAAVRRALDNLISNAVRYGT 354 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---------FYY 185 + +SV + + +++ + PE + +D Q Sbjct: 355 RARVSV--AVMQKSLRIRVEDDGPGIPEALRG-DAMRPFTRLDPARNQDLGTGVGLGLAI 411 Query: 186 VILLAHENKIRLLPEIIDD 204 V +A + L ++ Sbjct: 412 VADIARAHGGTLRLGTSEE 430 >gi|218440686|ref|YP_002379015.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218173414|gb|ACK72147.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 466 Score = 38.3 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 18/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMRLAFG 72 + H++ +P+ + +LE L + + I S L RL G Sbjct: 255 VSHELRTPVSNVKVTLEALSIGAASEPELCDRFIQTAQNEINRLSRLIQDLLDLGRLEAG 314 Query: 73 YTGSVDSLIGLGD-IEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 + L I + IE V ++ ++L+ + ++L L + + Sbjct: 315 VAPLEIQSVSLRSLINRAIEAIELRTFHHGVNINNDVPDLELNVDSERMLQALLNILENA 374 Query: 130 L---PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQF 183 + P G V++ N+ I +K G + P F + + D + Sbjct: 375 IKYSPPGSTVSLMGYTENNQKIIQIKDEGIGIKPEALPHIFEEFYRSDSSRQSDGTGLGL 434 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + K Sbjct: 435 AISQRIIKAHGGTITADSVLGEGTTIIISFPK 466 >gi|170690112|ref|ZP_02881279.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170144547|gb|EDT12708.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 751 Score = 38.3 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 23/179 (12%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVM--QLIRLSSMSAIIRLKF 66 + +A+L H++ +P+ I ++LEL++ + + + + + L Sbjct: 376 EFLAMLG----HELRNPLAPIVSALELMERRGTDSAARERAVIQRHVDHLVRLVDDLLDV 431 Query: 67 MRLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 R+ G + + ++ V+ A +++V E + A+++ Sbjct: 432 SRIIRGNVELDKRRVDVHEVITKAVEMTSVLVQQRAHRLKIEVDEALECVADPMRLAQVI 491 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-----RFPEKFTQIVDGNVE 173 NL + A GG++T+S + + + +++ N P F G Sbjct: 492 ANLLINAAKYTQAGGEITVSAM-AADADHIRIRVCDNGMGIAPDVLPHVFDTFYQGTQT 549 >gi|218779128|ref|YP_002430446.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760512|gb|ACL02978.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 526 Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 22/165 (13%) Query: 18 LCSRICHDIISPIGAIH-NSLELLDE--VGIEDEVMQLIRLSSMSA-------IIRLKFM 67 L + + H++ +PI I L++ ++E + ++ A L F Sbjct: 295 LTAGVAHELNNPINNIMITGHMFLEDYESTDDEERIDMMNDVVNEANRAKAIIANLLDFA 354 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVSWTGEKID-LSRERA------KIL 119 R +GS + + + ++ + + KR +++ D L R ++ Sbjct: 355 R----ESGSQLAPLDMAEMLKDTIALASNRLKRSKINIDFSSTDKLPRVHGDSQQLRQVF 410 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 LNL + A + GG +T++V + + ++K+ P+ Sbjct: 411 LNLILNAIDASQSGGNITVTVLPADEPHYIAVKVIDYGTGIPKHI 455 >gi|217069791|gb|ACJ83256.1| two-component histidine kinase sensor AoxS [Achromobacter sp. SY8] Length = 501 Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 19/169 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSS----M 58 +++ L A+ + + + H+I +P+G + N+L+ +++ G DE + L R Sbjct: 272 IAAERLAAVGRVAAGVAHEINNPLGGMLNALDTIEKHGSYDELTGKTLGLTRRGLMQIRR 331 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRER 115 + L RL + D+ +IE ++ +K + W +++ L Sbjct: 332 TVCALLVEARL----DSPLMHASDWQDLRVLIEPELS-EKGATLLWDVTAQQELPLPSHL 386 Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + LNL + A ++ GG V+ +V +++ + +G Sbjct: 387 VRQLTLNLLINAKNAVDLGGTVSCTVTGIQDQLTVEVANSGQHIPDDAL 435 >gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1425 Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 24/213 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRLAFGYTGS 76 H++ +PI +H LELL + D+ L+R S L F ++ G Sbjct: 837 HELRTPISGMHGMLELLQMSELNDDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQLQL 896 Query: 77 VDSLIGLGD-IEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAH 127 L I VI +V + W E D +R A ++L NL A Sbjct: 897 HYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLNNAV 956 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDI 181 R G++ I V K ++ G R F Q+ + ++ + Sbjct: 957 KFTER-GEIRIQVSFEKERLAIAVSDTGIGIAEDKQDRLFTPFEQV-ESDITRRFGGTGL 1014 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 LA + L+ E H L+ Sbjct: 1015 GLAICHQLAQKMGGTLVLESKPGHGTRLTFDFP 1047 >gi|289704827|ref|ZP_06501245.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Micrococcus luteus SK58] gi|289558443|gb|EFD51716.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Micrococcus luteus SK58] Length = 380 Score = 38.3 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 28/206 (13%) Query: 20 SRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIR 63 S + H++ +P+ A+ + + DE E QL I S + R Sbjct: 152 SDLAHELRTPVSVLTVYHEALQDGVSHWDEPTGELMGEQLARLTRLVEDINDVSRAEEGR 211 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERA-KILLN 121 ++ R G +G + + E + + + +D+ R+R ++L N Sbjct: 212 IELDRSPQGVSGLLHAATEAHK-----EAYATKGVALTMDADPGLAVDVDRQRMGQVLGN 266 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177 L A P GG+VT+ + S + S+ G P F + G+ D Sbjct: 267 LLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDH 326 Query: 178 -SHDIQFYYVILLAHENKIRLLPEII 202 + L + L Sbjct: 327 GGSGVGLAISRALIQTHGGTLSATST 352 >gi|254424785|ref|ZP_05038503.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192274|gb|EDX87238.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 814 Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 20/143 (13%) Query: 18 LCSRICHDI---ISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM-SAIIRLKFMRLAF 71 L S I HD+ ++PI I L + D E + ++ S+ A + + + A Sbjct: 568 LASGIAHDLNNILTPILGIAQLLRITQKDASAATHEHIDILEQSARRGASMVKQILTFAQ 627 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KI 118 G +G + + + + Q + D + + E ++ Sbjct: 628 GSSGDR-ATVDVLALLQEVIDVVRQGVPSNIEIQLETSTHPDPHQTRKLVSADATHLHQV 686 Query: 119 LLNLFMVAHASLPRGGKVTISVQ 141 +NL + A ++P GG +T+SV Sbjct: 687 FMNLCVNACDAMPEGGVLTLSVD 709 >gi|223940308|ref|ZP_03632165.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891021|gb|EEF57525.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 627 Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLSSMSAIIRLKFMRLAFGYT 74 I HD+ + + + +L + E +++ R S L F R G Sbjct: 251 IAHDLNNALTPVVMALSFIQGELATGESKKMLNLAQSSTRRSVEMVKQILSFARSMGGEH 310 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 S+ + +I ++ + E ++ ++ LLNL + A ++P Sbjct: 311 ASLQIRHLIAEIVELASHTFPRSIHILSDVASELYPVTGNATQLHQVLLNLCVNARDAMP 370 Query: 132 RGGKVTISVQD 142 GG +TI + Sbjct: 371 DGGSLTIEATN 381 >gi|294648986|ref|ZP_06726434.1| type 4 pilus sensor protein PilS [Acinetobacter haemolyticus ATCC 19194] gi|292825121|gb|EFF83876.1| type 4 pilus sensor protein PilS [Acinetobacter haemolyticus ATCC 19194] Length = 521 Score = 38.3 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSS 57 A+ + + + L AL L + I H+I +P+ AI + EL +E + M ++IR + Sbjct: 299 AQKLTQRVQQLKLAALGQLSASIAHEIRNPLAAIVQANELFNESDAHQQQMLSRMIRKQA 358 Query: 58 M 58 Sbjct: 359 K 359 >gi|226951744|ref|ZP_03822208.1| sensor protein [Acinetobacter sp. ATCC 27244] gi|226837534|gb|EEH69917.1| sensor protein [Acinetobacter sp. ATCC 27244] Length = 521 Score = 38.3 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 2 AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSS 57 A+ + + + L AL L + I H+I +P+ AI + EL +E + M ++IR + Sbjct: 299 AQKLTQRVQQLKLAALGQLSASIAHEIRNPLAAIVQANELFNESDAHQQQMLTRMIRKQA 358 Query: 58 M 58 Sbjct: 359 K 359 >gi|197121076|ref|YP_002133027.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170925|gb|ACG71898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 525 Score = 38.3 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 22/221 (9%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63 S L L + + + H++ +P+ ++ S+ELL + + + +L+ + A Sbjct: 301 SERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVLREAARLDELV 360 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKI 118 L+F R A G+VD L D +V + A V + + ++ Sbjct: 361 TEFLRFARPAPLRPGAVDLASLLDDALRVFANDPAAAGLVLSREIGPAPAACDPDQIRQV 420 Query: 119 LLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK----FTQIVDGNVE 173 + NL A +L RGG++ ++ F+++ +G E+ Sbjct: 421 VWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAERERIFLPFHTTKERG 480 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +Q + + R+ + L Sbjct: 481 TGLGLAVVQ-----RIVDAHGGRVEVRSAPGQGARFTVHLP 516 >gi|89054324|ref|YP_509775.1| periplasmic sensor signal transduction histidine kinase [Jannaschia sp. CCS1] gi|88863873|gb|ABD54750.1| periplasmic sensor signal transduction histidine kinase [Jannaschia sp. CCS1] Length = 435 Score = 38.3 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 10/156 (6%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ S + HD+ +P+ + +L ++++ D ++Q + + L F+R G Sbjct: 231 TLMLSGVSHDLRTPLTRMRLALGMMEDGPDRDALVQDVEEMEVLVATFLDFVR---GDAL 287 Query: 76 SVDSLIG-LGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERA--KILLNLFMVAHASLP 131 + L + V+E + + + R A + + NL +L Sbjct: 288 DDPESVDPLALVADVVEKARRGGGEIALDLPDAMAPAMVRPMAVQRAVTNLV---ANALR 344 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 GG+ +SV + +++ G ++ + Sbjct: 345 YGGRAAVSVTVQERTFRITVEDAGPGIPEDQRADAL 380 >gi|187920731|ref|YP_001889763.1| integral membrane sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] gi|187719169|gb|ACD20392.1| integral membrane sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] Length = 522 Score = 38.3 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 23/217 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVM-------QLIRLSS 57 L + +L L +++ H+I +P+GA+ LE L + ++ + + I Sbjct: 292 LQAERFASLGKLAAQVAHEIRNPLGAVRLKLENVLAHDGHAPNQSLTSALGQVERIETQV 351 Query: 58 MSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107 S + + + L + ++ ++ + VD + +V Sbjct: 352 TSLLALTQPVTLVMNTVDVAEWVTASAGTHRERAAQKAVDLTVEVDPLKPAQPEVDGQAA 411 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQ 166 + D + A+ L NL + A P GGKV + Q + N+ + + N P + Sbjct: 412 RFD-PVQMARALDNLILNAIRHAPPGGKVAVRAQHTGTGNMLRIAVVDNGPGIPVADRER 470 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 I + V D + V +A + R D Sbjct: 471 IFEPFVTGRPDGSGLGLAVVREVAAAHGGRAHVADTD 507 >gi|298489788|ref|YP_003719965.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298231706|gb|ADI62842.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1418 Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 16/135 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMRLAFG 72 I HD+ + + I + +LL +DE + +I ++ +K F R G Sbjct: 1057 IAHDLNNILTPILGAAQLLKGRFAKDEERHPQLLAIIENNAQRGAALVKQVLSFARGLKG 1116 Query: 73 YTGSVDSLIGLGDIEQVIEDFI--AVDKRVQV---SWTGEKIDLSRERAKILLNLFMVAH 127 G V + +I Q+ + +++ Q+ WT + L+NL + A Sbjct: 1117 ERGIVQVKHLIAEIIQIGKQTFPKSIEFTTQIPENLWTVSGDTTQLHQV--LMNLVVNAR 1174 Query: 128 ASLPRGGKVTISVQD 142 ++P GG +TI+ ++ Sbjct: 1175 DAMPEGGTLTITTEN 1189 >gi|194365517|ref|YP_002028127.1| response regulator receiver sensor signal transduction histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194348321|gb|ACF51444.1| response regulator receiver sensor signal transduction histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 377 Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 31/226 (13%) Query: 11 SMDLVALLCSRICHDIISPIGAI-----HNSLELLDEVGIEDEVMQLIRLS----SMSAI 61 ++ L + + + HD+ +P+ AI +L+L + +Q + S + Sbjct: 152 ALKLNETMAAVLTHDLRTPLSAILLCVDKLALDLPQGNAGAQQTLQYLEASTLRMARMVE 211 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGE---KIDLSRER 115 L F R+ G S L ++ + + R+++ G+ + DL R Sbjct: 212 QLLDFSRIRSGGLRLQASTCDLAEVTRAVVAEVGSAHGAGRIRLDTHGDTQLQGDLDR-L 270 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGN-----LARFPEKFTQIVD 169 ++ NL +L G + + V N+ ++ G L R E F Sbjct: 271 GQVAANLI---GNALTHGNEAQVEVDGRDPRNVLLRVRNAGEIDAALLPRLFEPFKASFH 327 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + Y V + R+ VV ALL + Sbjct: 328 QSNGLGLG-----LYIVDQFVRAHGGRIGARNEAGQ-VVFEALLPR 367 >gi|239905415|ref|YP_002952154.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795279|dbj|BAH74268.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 587 Score = 38.3 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 16/170 (9%) Query: 11 SMDLVAL--LCSRICHDIISPI---GAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRL 64 S A+ +R+ H+I +P+ G N + + E G + E + +I + L Sbjct: 365 SARFAAIGEAAARLSHEIKNPLMLMGGFANQVRRHVPEDGADYEKLGIIESEAKRLETLL 424 Query: 65 K----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKI- 118 F R A D + + ++ + V + GE + + A+I Sbjct: 425 NEVRDFTRPAPPQIEPRDLAATVRESLAIMAGAMESRGIVVTTGFGEGLEAVPHDAARIK 484 Query: 119 --LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 LLNL A ++ GG +T++ + ++ ++ G PE Sbjct: 485 QVLLNLLKNAAEAMEHGGSLTVTAEIVRDRARVTVADTGGG--IPEAMRA 532 >gi|222056726|ref|YP_002539088.1| histidine kinase [Geobacter sp. FRC-32] gi|221566015|gb|ACM21987.1| histidine kinase [Geobacter sp. FRC-32] Length = 475 Score = 38.3 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 34/159 (21%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H+I SP+ AI + ELLDE + E QL + + R++ VD ++ L Sbjct: 266 HEIKSPLSAIKGAAELLDE-QMPTEKRQLFLSNIRTEANRIQ---------DLVDRMLKL 315 Query: 84 G--DIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILL------------------- 120 + + +++ + ++ + + LSR+ +I Sbjct: 316 SELEARKTLQNVEPVCLNGLLTAVLESKGPILSRKGLQIAFHVDEGASVPGDLFLLHQAV 375 Query: 121 -NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 N+ A P GG + I+ ++ + + G Sbjct: 376 SNIVQNAIDFSPSGGTIAITATVAEGALVIVVDDEGPGI 414 >gi|107100692|ref|ZP_01364610.1| hypothetical protein PaerPA_01001719 [Pseudomonas aeruginosa PACS2] Length = 858 Score = 38.3 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74 I HD + + I SLEL+ + LI S+ A L F R Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127 + L ++ + + D I + E + + +LNL + A Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++ GG++ I ++ + + ++G A R+ G + + + + ++ ++ Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675 >gi|300697829|ref|YP_003748490.1| sensory histidine kinase in two-component regulatory system with OmpR (envZ) [Ralstonia solanacearum CFBP2957] gi|299074553|emb|CBJ54104.1| putative sensory histidine kinase in two-component regulatory system with OmpR (envZ) [Ralstonia solanacearum CFBP2957] Length = 437 Score = 38.3 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +P+ + E+L + I S ++ LA+ +G ++ Sbjct: 234 IAHDLKTPLSRLRLRAEMLTDPKAGAG----IERDVESMSAIVEQF-LAYAQSGDSEARD 288 Query: 82 GLGD--IEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVT 137 D + +++ F K V + + + +I++NL + G + Sbjct: 289 VTVDRHLRGLVQPFAEQGKHVALDLRAGERFRLKPTHLERIVVNLL---DNAFAYGAE-P 344 Query: 138 ISVQDSKNENIFSLKINGNLARFPE 162 + + + +E F+L + + A P+ Sbjct: 345 VRLATAADERGFTLTVEDHGAGIPQ 369 >gi|257487350|ref|ZP_05641391.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320322867|gb|EFW78958.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str. B076] gi|320329824|gb|EFW85812.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] gi|330988065|gb|EGH86168.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 468 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +++ + D RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D+ + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 465 >gi|254515596|ref|ZP_05127656.1| sensor protein GacS [gamma proteobacterium NOR5-3] gi|219675318|gb|EED31684.1| sensor protein GacS [gamma proteobacterium NOR5-3] Length = 675 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 29/178 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG----Y 73 L +R+ H++ +P+ + ++L LL + + + L+RL+S S+ L + Sbjct: 172 LFARMSHEMRTPLNGVVSALSLLGDHPMSAQAQDLLRLASSSSRNLLHVINYVLDISKIE 231 Query: 74 TGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL-----SRERAK-ILLN 121 G + ++ ++ AV+KR+++SW+ + + + + LLN Sbjct: 232 AGEEVFDATVFELNTLLRSVTDIVRARAVEKRLELSWSVSPLLSDLYVGDKSKLRQCLLN 291 Query: 122 LFM----------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 L VA +LP + + + + + R E F ++ Sbjct: 292 LVTNAIKFTDSGSVAVRALPSASEDAVRFEVEDTGSGI---SADDKPRIFEPFWTGMN 346 >gi|197249706|ref|YP_002149081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213409|gb|ACH50806.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 465 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|195874360|ref|ZP_02701732.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629005|gb|EDX48397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 465 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|119899781|ref|YP_934994.1| putative sensor histidine kinase [Azoarcus sp. BH72] gi|119672194|emb|CAL96108.1| putative sensor histidine kinase [Azoarcus sp. BH72] Length = 711 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 10/146 (6%) Query: 39 LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIA 95 +L+E+ + DE + IR L+F R A GY +VD L D + ++ Sbjct: 507 VLNEIRLIDEQVNRIRKIVTKL---LQFARPGEFA-GYAAAVDVNTVLADCLVLTRQHLS 562 Query: 96 VDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 G + ++L+NL + A ++P GG +T++ D + Sbjct: 563 RQGVTVRHEPGTLRLVEINEQELQQVLINLIVNAVQAMPAGGTLTLTTADWDERGPGGIV 622 Query: 153 INGNLARFPEKFTQIVDGNVESTIDS 178 G + I D ++ D Sbjct: 623 ARGVCVTVRDTGQGIRDEDLARIFDP 648 >gi|83311465|ref|YP_421729.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946306|dbj|BAE51170.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 373 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 23/223 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59 ++N ++S+M A+L H++ +P+ I + +LL++ ED+ + +LI + Sbjct: 137 SRNAARSVSAM--AAILA----HEVKNPLSGIRGAAQLLEQNAGEDDRVLTRLICDEADR 190 Query: 60 AIIRLKFMRL-AFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRV--QVSWTGEKIDL 111 + + R+ AF SV+ L + ++ E A R+ + + Sbjct: 191 IVALVD--RMEAFSDNPSVERSAVNIHRVLEHVRRISEAGFARSVRIIENYDPSLPPVLG 248 Query: 112 SRER-AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 R++ ++ LNL A ++P GG++ + ++ +L + P + + Sbjct: 249 DRDQLVQVFLNLVKNAAEAVPEEGGEI-VLSTGYQHGVRLALPGSETRRHLPLVVSIQDN 307 Query: 170 GN-VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 G + + + + + + L+ +II DH V+ Sbjct: 308 GPGIPEDLKPNLFDAFVTTKTSGSGLGLALVAKIIGDHGGVIE 350 >gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum] Length = 1223 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 19/169 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK----FM 67 +L + + H++ +P+ I + E LL + G+ + +L+ + + + LK + Sbjct: 189 ELKTQFFANVSHELRTPLTLISHPTEKLLKDPGVSADAKKLLEVVARNTRGLLKHVNNLL 248 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGE-----KIDLSRERA 116 ++ G ++ + D+ + I + +A DK+++ + R++ Sbjct: 249 DISKLEAGKMNVNYSMADVGKTITTIGLCFELLAKDKKLEYIINAPKDGLLMAAIDRDKI 308 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE 162 +++ NL A P GGK+ ISV+ + F + + PE Sbjct: 309 ERVVTNLISNAFKFTPTGGKIRISVEPDQLNQNPAFLVTVADTGPGVPE 357 >gi|323699236|ref|ZP_08111148.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459168|gb|EGB15033.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 613 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 38/221 (17%) Query: 24 HDIISPIGAIHNS--LELLDEVGIEDE---VMQLIRLSSMSAIIR----LKFMRLAFGYT 74 HD+ +PI + + L L++E ++ E ++ LI + A+ L R+ G Sbjct: 399 HDLKAPIIGVIDGCRLLLMEEERLDGELSEMLHLIEHQAEKALRLIGLSLTLYRIEAGTY 458 Query: 75 GSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILL----- 120 L + + IA + + D R +LL Sbjct: 459 AYEPEPTDLMAVIREALGNLGGRIADRGQTVAVSLDGRPDDGRDALVVPANPLLLETMVS 518 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL + A + P GG +++ V + + + N P + +H Sbjct: 519 NLLLNAVEAAPDGGAISVRV--APGDPTVLVIAN------PGAVPGSLRETFFDKYATHG 570 Query: 181 IQ------FYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 Q Y L A + E+ D + L L Sbjct: 571 KQGGTGLGTYSARLAATAMGGAIALEVSDAEDRTTLRVTLP 611 >gi|46446999|ref|YP_008364.1| putative two-component sensor histidine kinase [Candidatus Protochlamydia amoebophila UWE25] gi|46400640|emb|CAF24089.1| putative two-component sensor histidine kinase [Candidatus Protochlamydia amoebophila UWE25] Length = 410 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 25/38 (65%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +LNL + A ++P+GGK+T+SV+ ++E + + G Sbjct: 310 AILNLLVNAMQAMPQGGKITVSVEKMQDEVVIIISDTG 347 >gi|16767427|ref|NP_463042.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205358145|ref|ZP_02576065.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|17865735|sp|P37461|ZRAS_SALTY RecName: Full=Sensor protein zraS gi|6960345|gb|AAF33505.1| Salmonella typhimurium sensor protein (HYDH) (SW:P37461); contains similarity to Pfam domain PF00512 (signal), Score=270.1, E=2.9e-77, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422732|gb|AAL23001.1| sensory kinase in two component regulatory system with HydG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327269|gb|EDZ14033.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249277|emb|CBG27139.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160669|emb|CBW20200.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915279|dbj|BAJ39253.1| sensor kinase ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223373|gb|EFX48440.1| Sensor protein of zinc sigma-54-dependent two-component system [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990992|gb|AEF09975.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 465 Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|313106226|ref|ZP_07792476.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310878978|gb|EFQ37572.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 858 Score = 38.3 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74 I HD + + I SLEL+ + LI S+ A L F R Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127 + L ++ + + D I + E + + +LNL + A Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++ GG++ I ++ + + ++G A R+ G + + + + ++ ++ Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675 >gi|221639885|ref|YP_002526147.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221160666|gb|ACM01646.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 736 Score = 38.3 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73 I HD + + AI +LL ++ L I ++ A L F R Sbjct: 373 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 428 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126 I L ++ + + +RV + + R+ ++L+NL + A Sbjct: 429 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 488 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182 ++P GG + I +D A P ++ I + I +Q Sbjct: 489 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 545 Query: 183 -FYYVILLAHENKIRLLP 199 F+ + + L Sbjct: 546 PFFTTKRVGEGTGLGLST 563 >gi|218892783|ref|YP_002441652.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218773011|emb|CAW28823.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 857 Score = 38.3 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74 I HD + + I SLEL+ + LI S+ A L F R Sbjct: 503 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 558 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127 + L ++ + + D I + E + + +LNL + A Sbjct: 559 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 618 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++ GG++ I ++ + + ++G A R+ G + + + + ++ ++ Sbjct: 619 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 674 >gi|89054287|ref|YP_509738.1| periplasmic sensor signal transduction histidine kinase [Jannaschia sp. CCS1] gi|88863836|gb|ABD54713.1| periplasmic sensor signal transduction histidine kinase [Jannaschia sp. CCS1] Length = 451 Score = 38.3 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 20/181 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + A+ SLEL EV E L+ + A IR L F R A Sbjct: 220 IAHDFNNILTALQGSLELYYEVPEGQERDALVDE-AREAGIRATALVAQLLSFARRAPLE 278 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 TG+ ++ L D+ + + + ++ + + + + + LLNL + A+ ++ Sbjct: 279 TGAHNANAVLDDLRMLAQRLLPAGIQLNLRVVDGPACVLADASGLRSALLNLILNANDAM 338 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYY 185 G +T++V + + N LA P+ + + ++ ++ ++ Sbjct: 339 NGQGAITLAVDMVEGPAR---EANATLALTPDNAHLCFSVADDGPGMSAEVEHRAVEPFF 395 Query: 186 V 186 Sbjct: 396 T 396 >gi|327478950|gb|AEA82260.1| osmolarity sensor protein EnvZ [Pseudomonas stutzeri DSM 4166] Length = 443 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74 L+ + + HD+ +P+ + SLEL ++ +IR L +F LAF Sbjct: 223 ELMLAGVSHDLRTPLTRLRLSLEL--MASDDELTEDMIRD-VEDMNAILDQF--LAFVRD 277 Query: 75 GSVDS--LIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129 GS + L + I +V+ + + V++ R + ++L+NL + Sbjct: 278 GSDEPVETTDLAELIREVVAPYNQQQETVRLCVEPMPPFALRRVSIKRLLVNLI---ENA 334 Query: 130 LPR-GGKVTISVQDSKNE 146 L GG V ++ S ++ Sbjct: 335 LRYAGGGVEVAAYVSGDQ 352 >gi|328544620|ref|YP_004304729.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326414362|gb|ADZ71425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 469 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 70/199 (35%), Gaps = 9/199 (4%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI ++ E +D+ ++++ ++ + L F R T + Sbjct: 271 ISHDLRTPITSLRIRAEFIDDDEDREKMIAILDEMAQMTEATLAFARDE--ATQEERRSV 328 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141 LG + + I + R +++ L+ + L + ++ G + I+V+ Sbjct: 329 DLGGLMESIAGDQSDLGRDVEVAARDRVVLACRPVALKRALRNLVENAVRYGTRARIAVR 388 Query: 142 DSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195 + + ++ +G E F ++ + T + + H + Sbjct: 389 AEGGQAVLTVDDDGPGIADDRLADVFEPFVRLEESRSGET-GGIGLGLAIARSIVHAHGG 447 Query: 196 RLLPEIIDDHNVVLSALLE 214 + E + + + L Sbjct: 448 TIALENRPEGGLRATVHLP 466 >gi|205360185|ref|ZP_02835113.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340594|gb|EDZ27358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088603|emb|CBY98362.1| sensor kinase for HydG, hydrogenase 3 activity [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 465 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|146280682|ref|YP_001170835.1| osmolarity sensor protein EnvZ [Pseudomonas stutzeri A1501] gi|145568887|gb|ABP77993.1| osmolarity sensor protein EnvZ [Pseudomonas stutzeri A1501] Length = 443 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74 L+ + + HD+ +P+ + SLEL ++ +IR L +F LAF Sbjct: 223 ELMLAGVSHDLRTPLTRLRLSLEL--MASDDELTEDMIRD-VEDMNAILDQF--LAFVRD 277 Query: 75 GSVDS--LIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129 GS + L + I +V+ + + V++ R + ++L+NL + Sbjct: 278 GSDEPVETTDLAELIREVVAPYNQQQETVRLCVEPMPPFALRRVSIKRLLVNLI---ENA 334 Query: 130 LPR-GGKVTISVQDSKNE 146 L GG V ++ S ++ Sbjct: 335 LRYAGGGVEVAAYVSGDQ 352 >gi|254241878|ref|ZP_04935200.1| hypothetical protein PA2G_02599 [Pseudomonas aeruginosa 2192] gi|126195256|gb|EAZ59319.1| hypothetical protein PA2G_02599 [Pseudomonas aeruginosa 2192] Length = 473 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 83/221 (37%), Gaps = 48/221 (21%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ ++ + Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELLVKGALQCV---------- 323 Query: 72 GYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KIL 119 + + ++ + E ++A D RV+V + + A + + Sbjct: 324 -------KDTDIHENVEPVDLDLLLQHIAEPYLA-DGRVEVVGRAAEPYPGKPLALKRCI 375 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 NL +L G + +S++D + + +G PE+ + + + Sbjct: 376 GNLL---DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPR 429 Query: 180 DIQFYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Q Y + L +AH + + + + + +S L + Sbjct: 430 G-QGYGLGLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469 >gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 441 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 27/241 (11%) Query: 1 MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIR 54 MA N+ + + L + + HD+ SPI +I LE + + + + Q Sbjct: 192 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHMKDGDLPPQERQRYV 251 Query: 55 LSSMSAIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEK 108 +++ RL + L+ T V+ I I ++++D + + R + + Sbjct: 252 KTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 311 Query: 109 IDLSRERAKI----------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 DL A++ L NL A P GG+V + + + + E ++ G Sbjct: 312 ADLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGPGI 371 Query: 159 R---FPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 P F + + D + + + L E L Sbjct: 372 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRFCL 431 Query: 214 E 214 Sbjct: 432 P 432 >gi|254234370|ref|ZP_04927693.1| hypothetical protein PACG_00213 [Pseudomonas aeruginosa C3719] gi|254239611|ref|ZP_04932933.1| hypothetical protein PA2G_00228 [Pseudomonas aeruginosa 2192] gi|126166301|gb|EAZ51812.1| hypothetical protein PACG_00213 [Pseudomonas aeruginosa C3719] gi|126192989|gb|EAZ57052.1| hypothetical protein PA2G_00228 [Pseudomonas aeruginosa 2192] Length = 858 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74 I HD + + I SLEL+ + LI S+ A L F R Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127 + L ++ + + D I + E + + +LNL + A Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++ GG++ I ++ + + ++G A R+ G + + + + ++ ++ Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675 >gi|332187626|ref|ZP_08389362.1| sensory box protein [Sphingomonas sp. S17] gi|332012374|gb|EGI54443.1| sensory box protein [Sphingomonas sp. S17] Length = 868 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 32/224 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIR--------LKFMR--- 68 + HD + + I SLEL+ + ++ R ++ A R L F R Sbjct: 494 LAHDFNNLLAGISGSLELMALRLAQGRAGEIDRYMDAAQGATRRAAALTHRLLAFSRRQT 553 Query: 69 LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 LA T + G+ D I + + I V+ W +D + LLNL + A Sbjct: 554 LAPRPTDIAALVAGMADLIRRTVGPGITVETPSPDDWWTVLVDAPQLE-NALLNLCINAR 612 Query: 128 ASLPRGGKVTISVQD--------------SKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++P GG++ I++++ + + S+ G PE + D Sbjct: 613 DAMPDGGRIAIAIRNRSSRDPDDTHRDIPDGDYLMLSVTDTGTGM-TPEVIEKAFDPFFT 671 Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ A ++ ++ +S L + Sbjct: 672 TKPLGQGTGLGLSMIYGFARQSGGQVRIASTVGEGTTVSLYLPR 715 >gi|226225983|ref|YP_002760089.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226089174|dbj|BAH37619.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 282 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 22/228 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55 A + + L L+ HD+ SPIGA E L ++ + LI Sbjct: 46 ANDTWLDQHDPSLALLVG--FAHDLRSPIGATLLLAERLRAGQFGPVTAQQERQLGLIYE 103 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEK 108 S L R + D + L D+ + IA ++ + + W G + Sbjct: 104 SIFGMSALTGDLLDLARHGTSHRRRRDIVFPLSDLWASVRALVQPIAEERGLLLRWAGPR 163 Query: 109 IDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 D +ILLNL A G + + + P Sbjct: 164 NDHRIGEPEALRRILLNLVTNALKFTVSGSVTVTATVVGAGSDTIQFSVADTGCGLPLDL 223 Query: 165 TQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + + ++ S + + L + RL + +V+ Sbjct: 224 AEQLRTAPDAFAGINTSAGLGIAMCLTLLRDLGSRLEIRDNSESGLVV 271 >gi|254467373|ref|ZP_05080784.1| sensor histidine kinase [Rhodobacterales bacterium Y4I] gi|206688281|gb|EDZ48763.1| sensor histidine kinase [Rhodobacterales bacterium Y4I] Length = 470 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIG 82 HD+ SP+ A+ E+++E D ++ I L F R G + + Sbjct: 277 HDLRSPLTAMRVRSEMVEEEETRDSLIASIEEMQHMVEETLSFAR---GLADAEPRQDVD 333 Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 +G + + + + + + + L N+ + G +S Sbjct: 334 IGTFLEALRESMPEGFTLAQGDCVQVRVRPNAMRRALRNVI---ENAQRYSGGAEVSYAA 390 Query: 143 SKNENIFSLKINGNLARFPEK 163 I + G PE Sbjct: 391 VAETVIIRVCDRGPGIPEPEL 411 >gi|220917598|ref|YP_002492902.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955452|gb|ACL65836.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 451 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 12/210 (5%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFG 72 L+ S+I H++ +P+GAI +++ + + ++++ L L+F Sbjct: 229 ELMSSQISHELKNPLGAIKALVQISARGSSDGDTCERLKVVSSEVERMREILDGY-LSFS 287 Query: 73 YTGSVDSLIGLG------DIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNLFMV 125 L ++ V++ A + R + LLNL Sbjct: 288 RPLECLQREDLSLGELADEVLSVLQGRAAAAGVGLHRRGDARVEADPRRLKEALLNLVAN 347 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A + RG +V + V D +++ G P ++ + + Sbjct: 348 AVEASRRGDRVEVLVADHGGTVEVAVRDTGRGM-PPAVVARLGTPFFTTRDQGTGLGVLL 406 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ L D + L + Sbjct: 407 ARRAFVQHGGALEYASAPDAGTTATGTLPR 436 >gi|27380919|ref|NP_772448.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27354085|dbj|BAC51073.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 861 Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGY-TGSV 77 I HD + + AI + + LL+ D Q I +A +R LAF Sbjct: 477 IAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQLLAFSRRQTLR 536 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKILLNLFMVAHA 128 ++ LGD + + ++V++ W + E+ ++NL + A Sbjct: 537 PQVLDLGDALSDLTMLLRRLIGEKVKLDLIHGRDLWPVKVDVSQFEQV--IVNLAVNARD 594 Query: 129 SLPRGGKVTISVQDSKNENIFSLKING 155 ++P GGK+ I + E+ L G Sbjct: 595 AMPDGGKLIIRTANVATEDAGKLAYKG 621 >gi|330967657|gb|EGH67917.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 676 Score = 38.3 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75 I HD + + I SLEL+ L S+ A + LAF Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371 Query: 76 SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 S+DS + + + +++ + + WT E + LLNL + Sbjct: 372 SLDSKPVDMNHLVDAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181 A ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486 Query: 182 QFYYV 186 ++ Sbjct: 487 DPFFT 491 >gi|258592618|emb|CBE68927.1| putative Multi-sensor signal transduction histidine kinase precursor [NC10 bacterium 'Dutch sediment'] Length = 601 Score = 38.3 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 19/221 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----------- 57 S L L L S + H+I +P+ A+ LELL + + + + S Sbjct: 381 SRKLADLGRLTSGVAHEIKNPLNAMIIHLELLKQKLNDPS--ETVAKSLEFLGGEVHRLD 438 Query: 58 MSAIIRLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 L+F+R LA L + + + V +++ T I+ E Sbjct: 439 RMVQGFLRFVRPQTLALRPMSLNTLLQEVVRLAEAQGAHAGVTFVLRLDGTIPPINGDHE 498 Query: 115 RAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 + LNL + A ++P GG VT++ S I + I+ + E +I Sbjct: 499 LLRQAFLNLVLNACQAMPDGGAVTLATDRSAEGAIRAHVIDHGIGIPAEDLDKIFRLYYT 558 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + I V + + + + ++ Sbjct: 559 TKPDGNGIGLSLVYRIVQMHGGSVEVDSKVGQGTTMAVTFP 599 >gi|254448626|ref|ZP_05062085.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium HTCC5015] gi|198261815|gb|EDY86101.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium HTCC5015] Length = 436 Score = 38.3 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 77/217 (35%), Gaps = 27/217 (12%) Query: 24 HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYT 74 H++ +P+ + +ELL+ ++ +++ ++R S+ R++ RL Sbjct: 216 HELKTPLTVMSGYMELLEGTPELDQDLLSVVR-SADEQTARMRRLVDDLLTLSRLESNTQ 274 Query: 75 GSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHA 128 + ++ +E V+ED ++ D+ V + ++ + + L NL A Sbjct: 275 ARFEPIMVAAILETVVEDAIHLSGDRDHDVGLSADRELIIDGVYSDLVSALSNLVFNAVN 334 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHD-- 180 P G V +S Q +E + +K NG R E+F + G + Sbjct: 335 HTPDGSVVRVSWQREGDEAVLRVKDNGLGIEPRHLPRLTERFYRAQAGRERDHSSARQGR 394 Query: 181 ---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + RL + Sbjct: 395 GTGLGLAIVKHIVQAHGGRLSIQSTPGEGAEFVCYFP 431 >gi|167577307|ref|ZP_02370181.1| probable two-component sensor kinase [Burkholderia thailandensis TXDOH] Length = 389 Score = 38.3 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 15/135 (11%) Query: 33 IHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDI 86 + + E +D + ++ LI S A R++ R+ F GS + + + + Sbjct: 185 LRAAQEEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADIHEG 241 Query: 87 EQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISV 140 + + + + + + + +L ++++NL M A ++ G +TI Sbjct: 242 LEATLNVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRT 301 Query: 141 QDSKNENIFSLKING 155 + + +++ G Sbjct: 302 RREGDGVTIAIEDTG 316 >gi|320109345|ref|YP_004184935.1| histidine kinase [Terriglobus saanensis SP1PR4] gi|319927866|gb|ADV84941.1| histidine kinase [Terriglobus saanensis SP1PR4] Length = 254 Score = 38.3 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 16/160 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLA--- 70 + I H+I +P+ I N L E + +R L +R+A Sbjct: 37 AGQFSAAIMHEINNPLETISN---LAYLAKAEADNAAKVREYLTQLESELANVIRIAKQT 93 Query: 71 ---FGYTGSVDS--LIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLN 121 FG ++ + L+ + + ++ K+V ++ E ++L N Sbjct: 94 LGFFGPAEALRAVNLVDVAESALLVHGRRLSAKQVNLVKRLVDQATVKIHPGEMLQVLSN 153 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 L A +LP G + I ++ SKNE + +G+ P Sbjct: 154 LIANAVDALPEKGTLAIRLRKSKNEVHLMIVDDGHGIPPP 193 >gi|260892382|ref|YP_003238479.1| histidine kinase [Ammonifex degensii KC4] gi|260864523|gb|ACX51629.1| histidine kinase [Ammonifex degensii KC4] Length = 555 Score = 38.3 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 22/215 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI----RLSSMSAIIRLKFMRL 69 L + + H++ +P+ +I L+LL D+ E ++++ + L F R Sbjct: 339 LATALFHEVRNPLTSIKGVLQLLYEKRDDQDPERRYLEVVLGELDRTVRIIRNFLYFARP 398 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDLSRERAKILLN 121 + D L DI ++E A RV+VS+ DL ++ LN Sbjct: 399 KDCHPVPTDLDALLRDILLMVE-LQASAARVEVSYDPHPGTPVILVDPDLIKQAV---LN 454 Query: 122 LFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 L A ++P+GGK+ + I ++ G PE F ++ + + Sbjct: 455 LAQNALQAMPQGGKLFFRLYPQGSEWVIIEVEDTGTGI-PPEHFPRLGEAFFTTRRGGTG 513 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +A + R+ E + + + Sbjct: 514 LGLAVSYQIAKMHGGRIEVESEEGKGSKFRIKIPQ 548 >gi|194449893|ref|YP_002048158.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359439|ref|ZP_02670061.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194408197|gb|ACF68416.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336113|gb|EDZ22877.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 465 Score = 38.3 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|315647929|ref|ZP_07901030.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315276575|gb|EFU39918.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 448 Score = 38.3 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 18/154 (11%) Query: 20 SRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAII---RLKF----M 67 S + H I + IG I S E L + G E +++I SS + R++ Sbjct: 227 SMLNHTIKNEIGKIAISTENVKLMLTQDSGAVMEQLEVITHSSEHLVAMVGRIQQQMKDF 286 Query: 68 RLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLSRERAKILLNLFM 124 RL + + + L + E + I +D + +Q W +E + NL Sbjct: 287 RLVEQPARTDQLIAEVQLREYELLSRYGIELDVQNLQRPWLLADAVHLKE---AISNLIR 343 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++P GG++TI+V + S+K NG+ Sbjct: 344 NSVEAMPEGGRITITVTADRKGAAISVKDNGSGI 377 >gi|158521331|ref|YP_001529201.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510157|gb|ABW67124.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 457 Score = 38.3 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 33/166 (19%) Query: 22 ICHDIISPIGAIHNSLELLD-----------EVGIEDEVMQLIRLSSMSAII-------- 62 I H++ SP+ I ELL GIE E++ + RL + A Sbjct: 242 ISHELCSPLTRIRLGTELLHKHVSGDRAANYLKGIETEIVSMDRLVANMAAYSGMNLPGF 301 Query: 63 -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 R+ RL G + + + +++ + A R G++ L++ Sbjct: 302 TPSMGRISPWRL---VAGVHERYLPVAEVQNI--HLAADGDRELPEIEGDRELLTQVFVN 356 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +L N F P GG +TI +++ + F + G ++ Sbjct: 357 LLDNAF----RHTPAGGTITIGAENAGDRVRFFVSDTGPGVPEADR 398 >gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 776 Score = 38.3 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 21/199 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGY 73 + H++ +P+ + N LE+L D + R + L+ R+ G Sbjct: 422 LAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGK 481 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL-----SRERAKILLNLFMV 125 + L Q + + +S T + L ++++LNL Sbjct: 482 LELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLNN 541 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDSHD 180 A P GG ++++ + +E + ++ +G + ++ + Sbjct: 542 AAKYTPPGGTISLAAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGLG 601 Query: 181 IQFYYVILLAHENKIRLLP 199 I V LA + + Sbjct: 602 IGLALVRGLAELHGGTVAA 620 >gi|163736180|ref|ZP_02143599.1| periplasmic sensor signal transduction histidine kinase [Phaeobacter gallaeciensis BS107] gi|161390050|gb|EDQ14400.1| periplasmic sensor signal transduction histidine kinase [Phaeobacter gallaeciensis BS107] Length = 439 Score = 38.3 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 25/202 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYT 74 L+ S + HD+ +P+ + L +LDE E +R L F+ + G + Sbjct: 236 TLMLSGVSHDLRTPLTRMKLGLSMLDEEDAEP-----LRQDVDEMQALLDAFLDFSRGVS 290 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA--KILLNLFMVAHASL 130 S + + ++ D + + +G+ + R A + + NL ++ Sbjct: 291 TSEPEEVDPHVMITLLVDGWRRQGKDVMLGEMSGKGKVMLRGSAIRRAVQNLI---SNAV 347 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-------- 182 G + +SV ++ ++ +G ++ + +D Q Sbjct: 348 RYGTRARVSVAMTEKFLRIRVEDDGPGIAEADRTEAT---RPFTRLDPARNQDLGSGVGL 404 Query: 183 -FYYVILLAHENKIRLLPEIID 203 V +A + L E Sbjct: 405 GLAIVTDIARAHGGTLRLEQSA 426 >gi|148263898|ref|YP_001230604.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397398|gb|ABQ26031.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 832 Score = 38.3 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 80/208 (38%), Gaps = 12/208 (5%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 L + I H+I +P+ I L+ L + ++ E ++ + + + Y Sbjct: 622 LSAGIAHEIRNPLTGISLLLDDLHDRPAVDSESQAMMGKALAEIERVERLISSLLNYASP 681 Query: 77 VDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEK-IDLSRERAKI---LLNLFMVA 126 + GDI +V++D + + K+ V++ + ++ + KI LLN+ A Sbjct: 682 PKAEFREGDINRVVQDTLLLFKKECEKQGVELVSSLQEIPSFPFDAGKIRQALLNISKNA 741 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +LP GGK+ IS + + I ++ NG PE + + + Sbjct: 742 LGALPEGGKIEISTALAGDAAIINVSDNGQGI-EPEDIPLLFEPFFTRKTGGTGLGLSIT 800 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E+ R+ + V S L Sbjct: 801 QRIIDEHHGRITVTSSKGNGTVFSVSLP 828 >gi|326625882|gb|EGE32227.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 534 Score = 38.3 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 430 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTPYFTTKA 489 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 490 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 527 >gi|307635113|gb|ADI85671.2| sensor histidine kinase, HAMP domain-containing, nonconserved putative heme-binding site [Geobacter sulfurreducens KN400] Length = 496 Score = 38.3 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 78/217 (35%), Gaps = 24/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR------LKFMRLA 70 + + I H+I +P+ I ++ ++ + ED ++I L F Sbjct: 274 MAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEVIEQVNRLDKTVNDLLF---- 329 Query: 71 FGYTGS-VDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-SRERAKILLN 121 FG + L D+ + + ++KR+++ + + ++ +++LN Sbjct: 330 FGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPLPLVFVDPKQVQQVVLN 389 Query: 122 LFMVAHASL-PRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT-QIVDGNVESTID 177 L + A ++ GG +T++ + + + +++ PE +I + Sbjct: 390 LILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGIPEPIISKIFTPFFTTKAQ 449 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L ++ L + + V S L Sbjct: 450 GTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 486 >gi|171915577|ref|ZP_02931047.1| sensory histidine kinase CreC [Verrucomicrobium spinosum DSM 4136] Length = 484 Score = 38.3 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 41/163 (25%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV------ 77 H++ SP+ AI + ELL E + +E R KF+R G + + Sbjct: 272 HELKSPVAAIRGAAELLQEGTMPEEQ-------------RRKFLRNIHGESLRLQDLLDR 318 Query: 78 ---------------DSLIGLGDI-EQVIEDF--IAVDKRVQVS-WTGEKIDLSRERAKI 118 S++ L I +V E F + V R+++ W + +++ + + Sbjct: 319 LLALAGLEKKKALDETSIVDLSVICREVCEHFEPMLVQNRLRLDHWIQDDVEVRGDTFLL 378 Query: 119 ---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 L+NL A P GG ++I ++ + F ++ +G Sbjct: 379 HTALINLVQNAVDFSPEGGLISIGLKVVDDRACFIVEDDGPGL 421 >gi|254505792|ref|ZP_05117938.1| two-component system sensor histidine kinase [Vibrio parahaemolyticus 16] gi|219551445|gb|EED28424.1| two-component system sensor histidine kinase [Vibrio parahaemolyticus 16] Length = 478 Score = 38.3 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 34/183 (18%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLKFMRLAFGYTGSVD 78 I HD+ +PI + E+LD+ + +L + L A+ +K + Sbjct: 283 ISHDLKTPIACLKLRAEMLDDDTDRERFTRLANDLDLMVKGALQCIK--------ETDIH 334 Query: 79 SLIGLGDIEQVIEDFIAV----DKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132 I D Q+IE +R+Q+ + E + A + + NL +L Sbjct: 335 EEIEPIDFNQLIEHIATTVTPETERIQIQGSIESAVAGKPLAIKRCIQNLV---DNALKY 391 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 G KV I + DS + + +G + I Q YY E Sbjct: 392 GDKVNIQLFDSADAVNIVIDDHGEGV--------------DEAILDKLCQPYYRANKTQE 437 Query: 193 NKI 195 Sbjct: 438 GSG 440 >gi|115524257|ref|YP_781168.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115518204|gb|ABJ06188.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 708 Score = 38.3 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 17/127 (13%) Query: 46 EDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101 +D + +I + L F R ++ L + + D + + Sbjct: 373 DDRALDMIDSAVAKGTGLTRQLLSFSR----RNPMAAKVVDLTETVERFGDVLRQSVQSN 428 Query: 102 VSWTGEKIDLSRERAKI--------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + E A+I LLNL + A ++P GG++TIS+ + ++ Sbjct: 429 IVIEIEHPAQP-VAARIDPNEFEIALLNLTLNARDAMPEGGRITISIDRQTLPPRGAGEL 487 Query: 154 NGNLARF 160 +G +A Sbjct: 488 SGEVAVL 494 >gi|330949870|gb|EGH50130.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas syringae Cit 7] Length = 394 Score = 38.3 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGQRASQLVDDVLDFARGRMGH--- 239 Query: 77 VDSLIGLGDIE---QVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125 + + + + +E I+ +RV E+I ER A++L NL Sbjct: 240 -GIPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSDIGVLERIRCDHERIAQLLSNLV-- 296 Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179 ++ G + + V + +F L + PE + I Sbjct: 297 -SNAISHGDAESPVEVTAGVHGELFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y +A + L + V + + Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390 >gi|149926099|ref|ZP_01914362.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] gi|149825387|gb|EDM84598.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] Length = 1652 Score = 38.3 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 23/177 (12%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDI---ISPIGA-----IHNSLELLDEVGIEDEVM 50 + + L L AL + I HDI ISP+ + + + L + + + + Sbjct: 1266 LQRTQQLVLQQERLRALAEMAGGIAHDINNAISPVALYTDALLGSEVNLSERGRKQLQTI 1325 Query: 51 QL-IRLSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQV------IEDFIAVDK 98 QL I + + +F R + ++ + + + I++D Sbjct: 1326 QLAIDDVARTVDRMGQFSRRQEEGVELTRVDPTQVCEQAMELTKARWHDIPLRNGISIDF 1385 Query: 99 RVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 +++ ID S + L NL A ++P+GG +T+S + KN + + I Sbjct: 1386 KLEFGENVPDIDASEPELREALTNLIFNAVDAMPKGGAITLSTRLDKNSDHDQVVIE 1442 >gi|56415999|ref|YP_153074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364926|ref|YP_002144563.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130256|gb|AAV79762.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096403|emb|CAR62008.1| two-component system sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 465 Score = 38.3 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|296534346|ref|ZP_06896813.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265327|gb|EFH11485.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 368 Score = 38.0 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD+ + + + + +L + E+++ + A R L F R Sbjct: 153 IAHDMNNVLQTVVSGTRVLAAQAGDPEMVRRLAGLMGEAAERGMAIGRRLLSFARPGELR 212 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAK-ILLNLFMVAHA 128 D L ++ ++ D + +V+V+ T ++ R++ + +LLNL + A Sbjct: 213 ASHADIAAILEELRGMLSDMLGSRIQVRVAETPAPGEVGVFVDRQQLETVLLNLAVNARD 272 Query: 129 SLPRGGKVTISVQDSKNENIFSLKING 155 ++P+GG++T+S + + G Sbjct: 273 AMPQGGEITLSARRAAGPEGEPAVALG 299 >gi|288937247|ref|YP_003441306.1| integral membrane sensor signal transduction histidine kinase [Klebsiella variicola At-22] gi|288891956|gb|ADC60274.1| integral membrane sensor signal transduction histidine kinase [Klebsiella variicola At-22] Length = 474 Score = 38.0 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 29/209 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70 H++ SP+ AI + E+L E + MQL+ + RL+ RL Sbjct: 265 HELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322 Query: 71 FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + + + Q + D K + + W + ++ + A+ L NL Sbjct: 323 I-----KQQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181 A P+GG++ ++ + E S+ NG F + E S + Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +V +A + + + VV + Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466 >gi|116748271|ref|YP_844958.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116697335|gb|ABK16523.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 514 Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E I + + LLNL A ++P GG V + + N L++ P T Sbjct: 389 PEMIGDPGQLLQCLLNLIFNAVEAMPDGGTVKVGTRFDSATNEIRLEVTDQGIGIPADLT 448 >gi|329765880|ref|ZP_08257446.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137723|gb|EGG41993.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 487 Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 66/163 (40%), Gaps = 17/163 (10%) Query: 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAI- 61 ++ + L + + +++ HD+ +P+ I N EL + E+ + M+ I+ + Sbjct: 277 SVKNEKLALIGDMTAKLSHDLRNPLTIIKNGFELFELGLPEEKRKDNMKRIQNAVDRISY 336 Query: 62 ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + F+R I L I + + I + + +++ I ++ +R +I Sbjct: 337 EIEAIMNFVR----DNPLHKEQISLRRIIDITIENIEIPEGIKIEKEIPDITINVDREQI 392 Query: 119 L---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 L N+ + A ++ + GK+TI + +G Sbjct: 393 LRVFSNIIINAIDAM-KNGKITIIAKSKTKTIEIEFTDSGPGI 434 >gi|283851971|ref|ZP_06369247.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp. FW1012B] gi|283572695|gb|EFC20679.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp. FW1012B] Length = 896 Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----SAIIRLK----- 65 ALL S + HD +P+ AI S E L +G + +R S + RL+ Sbjct: 667 AALL-STVTHDFKTPLAAIAGSAESLLALG--EATTATVRRSLEENIVAEASRLERLVDN 723 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERA--- 116 +R+A +GSV I IE+V+ + V++ + + + Sbjct: 724 LLRIAALESGSVAPDIKPIPIEEVVGSALTRLEGLLVGHEVRLDIPDDLPPIPMDEVLME 783 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDGNVES 174 ++L+NL A P G ++ + + + ++ G PEK + + Sbjct: 784 QVLINLLENAAKHTPPGTEIRVGAAVRGRQALVTVSDTGPGLPPGDPEKLFERFQRGDRA 843 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206 + + + + + + + Sbjct: 844 SAAGYGLGLAICRAVVKAHGGTITADQTGGQT 875 >gi|205360803|ref|ZP_02686544.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205346982|gb|EDZ33613.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 465 Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|200387245|ref|ZP_03213857.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604343|gb|EDZ02888.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 465 Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|39998007|ref|NP_953958.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39984952|gb|AAR36308.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 487 Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 78/217 (35%), Gaps = 24/217 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR------LKFMRLA 70 + + I H+I +P+ I ++ ++ + ED ++I L F Sbjct: 265 MAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEVIEQVNRLDKTVNDLLF---- 320 Query: 71 FGYTGS-VDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-SRERAKILLN 121 FG + L D+ + + ++KR+++ + + ++ +++LN Sbjct: 321 FGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPLPLVFVDPKQVQQVVLN 380 Query: 122 LFMVAHASL-PRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT-QIVDGNVESTID 177 L + A ++ GG +T++ + + + +++ PE +I + Sbjct: 381 LILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGIPEPIISKIFTPFFTTKAQ 440 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L ++ L + + V S L Sbjct: 441 GTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 477 >gi|330819648|ref|YP_004348510.1| sensory histidine kinase [Burkholderia gladioli BSR3] gi|327371643|gb|AEA62998.1| sensory histidine kinase [Burkholderia gladioli BSR3] Length = 434 Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 13/153 (8%) Query: 24 HDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII---RLKFMRLAFGYTGS 76 H++ SP+ A+ E L+ + V+ L R + + + L F R+ + Sbjct: 226 HELRSPLTALSLQAERLEPLTLATPAHERVLALRRGLARGSALVEQLLNFARVQDAPDTA 285 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRE-RAKILL-NLFMVAHASL 130 L V+ED + + R ++ E L+R ++L+ NL A Sbjct: 286 DQRLSVAQQCRAVLEDLMPLADRKRIDIGVVALDEGEVLARPLDLRMLVRNLVDNAIRYT 345 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 P GG++ ++V+ ++ S+ +G E+ Sbjct: 346 PEGGRIDLAVRAGEDRVELSVADSGPGIAPAER 378 >gi|317487187|ref|ZP_07945988.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316921588|gb|EFV42873.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 568 Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +++ R + + +LLNL + A ++P+GG +++ + + LK G Sbjct: 458 EDDRVLGERSQIRQVLLNLGLNAMDAMPQGGTLSVRLYAEGGQIRIELKDTG 509 >gi|71735693|ref|YP_273447.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556246|gb|AAZ35457.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 486 Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 284 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 334 Query: 72 GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +++ + D RV + + A + + NL Sbjct: 335 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 392 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D+ + + G PE+ + V + + Q Sbjct: 393 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 446 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + + ++ L + Sbjct: 447 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 483 >gi|330890494|gb|EGH23155.1| sensor histidine kinase [Pseudomonas syringae pv. mori str. 301020] Length = 459 Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 257 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 307 Query: 72 GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +++ + D RV + + A + + NL Sbjct: 308 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 365 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D+ + + G PE+ + V + + Q Sbjct: 366 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 419 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + + ++ L + Sbjct: 420 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 456 >gi|329765160|ref|ZP_08256742.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138363|gb|EGG42617.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 358 Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 17/165 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS----SMSAIIRL 64 +L+ L SRI HDI +P+ I ++E L + + M I S + L Sbjct: 150 ELIGELSSRIAHDIRNPLSVIRAAVENLKILYSIDDAKLKNMDKIDRSIDRITHQIEDVL 209 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--SRERAKILL-N 121 F+R + L +I D I + +V+ I++ ++R +++ N Sbjct: 210 DFVR----SDTMMFEKYALSEILADALDSIHIPNKVRFELPKNDIEIMCDKKRISVVMVN 265 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + + ++ G + I D+K I ++ +G+ P Sbjct: 266 IILNGIQAINENGNIKIRFNDAKKFAIIEIEDSGSG--IPNHIID 308 >gi|89901866|ref|YP_524337.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] gi|89346603|gb|ABD70806.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] Length = 490 Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 34/183 (18%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----------MQLIRL 55 L S + A+ L + I H+I +P+G + N++ L G D V + IR Sbjct: 263 LKSERMAAVGRLTASIAHEINNPLGGMLNAISTLKRHGNPDPVTQKTVSLLERGLSQIRE 322 Query: 56 SSMSA--IIRLKFMRLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKI-- 109 + + ++K + D+E + + A + +SW Sbjct: 323 TVAALLVEAKVK------------SRPLDAADLEDIHILVTPAANKQGAHLSWVAALPHA 370 Query: 110 -DLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 L + +L+NL + A + R G V + + S+++ + ++ +G PE+ ++ Sbjct: 371 LSLPSTLVRQMLINLLLNAITAAGRDGLVAVRILASESQLVMVVENSG-RPLLPEQLARL 429 Query: 168 VDG 170 + Sbjct: 430 FEP 432 >gi|32477631|ref|NP_870625.1| histidine kinase [Rhodopirellula baltica SH 1] gi|32448185|emb|CAD77702.1| probable histidine kinase [Rhodopirellula baltica SH 1] Length = 497 Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 33/174 (18%) Query: 24 HDIISPIGAIHNSLELLDEV------GIEDEVMQ-----------LIRLSSMSAIIRL-- 64 HD+ SP+ I ++E++ + + E +Q LI S + +R Sbjct: 49 HDLKSPLAGIAATMEVIRDGILGDVTPSQAEFLQAAMTQCEYIDSLIGELSRAERLRSGT 108 Query: 65 -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117 + R+A + D + + +K++ + W G + + + Sbjct: 109 PRVRRVA-------TKRTAIRDAVDLSTRSLLSNKQIDLHWDGAEPNSIDTLVDSTILSR 161 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 +L NL + A + G + I V+D N + + + Q + G Sbjct: 162 LLTNLIINAERASKSGSPILIRVEDDLNRGVAVWSVIDRGRGISPQRLQQLSGT 215 >gi|46203570|ref|ZP_00051334.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 425 Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 23/157 (14%) Query: 42 EVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQ--------V 89 + G + IR ++ A L F R + L ++ Sbjct: 198 DKGRMSRAVGNIREAAERAATLTQQLLSFAR----KQRLDGRTVNLNELVSEMKELAGRT 253 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 + + + ++ + +ID ++ LLN+ + A ++P GG+VTI+ ++ ++ Sbjct: 254 LGETVTIETDLAADLRLCRIDPTQAEV-ALLNVLINARDAMPEGGRVTITTRNEESG--- 309 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 + +G+ T G + S + + + ++ Sbjct: 310 --RSDGSNRLVSVSVTDTGAG-IPSDVLARVMDPFFT 343 >gi|220906225|ref|YP_002481536.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219862836|gb|ACL43175.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 634 Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Query: 18 LCSRICHDI---ISPI----GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----F 66 L S I HD+ ++P+ + LE LD+ ++ ++QL+ ++ +K F Sbjct: 268 LASGIAHDLNNILTPVLVTAQLLQVKLENLDDRSVK--MLQLLEANAKRGADLVKQVLSF 325 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123 R G + + + +I+Q+I + ++V + +S ++ L+N Sbjct: 326 ARGVEGKHTILQTKHLIREIQQIIRETFPKSIELEVEAPEQLWTVSGNATQLHQVLMNFC 385 Query: 124 MVAHASLPRGGKVTISVQD 142 + + ++P GG + IS Q+ Sbjct: 386 VNSRDAMPEGGVLKISAQN 404 >gi|116696286|ref|YP_841862.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113530785|emb|CAJ97132.1| signal transduction histidine kinase containing a receiver domain (hybrid) [Ralstonia eutropha H16] Length = 668 Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 70/217 (32%), Gaps = 26/217 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----IIRLKFMRLAFGY 73 + H++ +P+ A+ N++E+++ D +I L R+ G Sbjct: 314 LAHELRNPLAAVRNAVEVIELTPDADTRVRRCAGIIDRQLHQLERLVNDLLDVGRVTAGK 373 Query: 74 TGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125 + D+ + I A +R+ ++ + + A++ LLNL Sbjct: 374 LKMELTPTSYNDVVTTSIEAIRPVLEAAGQRLVLALPASSPYVRADAARLGQVLLNLLSN 433 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSH 179 A PRGG V++ V I ++ G R + F Q + Sbjct: 434 AVKYTPRGGIVSVHVSVESARVITAVSDTGRGLAPAALDRIFDLFAQEAGAGSRGGL--- 490 Query: 180 DIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215 I + + + + + +L + Sbjct: 491 GIGLALAKAVVEAHGGAIQADSGGAGKGSTFTVILPR 527 >gi|77464023|ref|YP_353527.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77388441|gb|ABA79626.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 766 Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73 I HD + + AI +LL ++ L I ++ A L F R Sbjct: 403 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 458 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126 I L ++ + + +RV + + R+ ++L+NL + A Sbjct: 459 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 518 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182 ++P GG + I +D A P ++ I + I +Q Sbjct: 519 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 575 Query: 183 -FYYVILLAHENKIRLLP 199 F+ + + L Sbjct: 576 PFFTTKRVGEGTGLGLST 593 >gi|76666631|emb|CAJ31152.1| histidine protein kinase [uncultured sulfate-reducing bacterium] Length = 490 Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 19/154 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS----MSAIIRLKFMRL 69 L + + H++ +P+ + SLE + D+ + + + LI + L F R Sbjct: 271 LAAGVAHEVRNPLAGVLASLENMRANPDDREMAERYVDLIEDGLQRIEHTVRTLLDFSRE 330 Query: 70 AFGYTGSVDSLIGLGDIEQVIE--DFIAVDKRVQVSWTGEKIDLSRERA------KILLN 121 S++ + V E + V+V + + ++ A ++ LN Sbjct: 331 ---QEISLEPTSINHSLRHVAELAAYKIRKAGVEVVFDLAEPGTAQVMADHFQMEQLFLN 387 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 L + A ++P GG +T+ + + +++ G Sbjct: 388 LVLNAVEAMPEGGVLTLRTRVKWGKVEVAVEDTG 421 >gi|126462868|ref|YP_001043982.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126104532|gb|ABN77210.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 770 Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73 I HD + + AI +LL ++ L I ++ A L F R Sbjct: 407 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 462 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126 I L ++ + + +RV + + R+ ++L+NL + A Sbjct: 463 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 522 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182 ++P GG + I +D A P ++ I + I +Q Sbjct: 523 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 579 Query: 183 -FYYVILLAHENKIRLLP 199 F+ + + L Sbjct: 580 PFFTTKRVGEGTGLGLST 597 >gi|329894129|ref|ZP_08270114.1| Sensor histidine kinase [gamma proteobacterium IMCC3088] gi|328923301|gb|EGG30621.1| Sensor histidine kinase [gamma proteobacterium IMCC3088] Length = 719 Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 44/229 (19%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FG 72 + SR+ H++ +P+ + +SLE LD + I S R RL+ Sbjct: 501 MSSRLSHELRTPVAVVKSSLETLDMEQ------EGIGDSVYLQRAREGLDRLSSILTNMS 554 Query: 73 YTGSVDSLIGLGD---------IEQVIEDF-IAVDKR--------VQVSWTGEKIDLSRE 114 ++ + + +E I+ + +A R +V G L++ Sbjct: 555 EASRLEESLQQTENQDFNLVALLEGCIQGYRLAYPGREIHLVCAQAKVQLHGAPDLLAQL 614 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVE 173 K++ N A P G ++++++ +K G P+ + D V Sbjct: 615 LDKLINNAMEFA----PEGTPISVTLEVRNQTAHIEVKNQGPE--LPDNMQGRLFDSMVS 668 Query: 174 STIDS-HDIQFYY------VILLAHENKIRLLPEIIDD-HNVVLSALLE 214 + + Q + L+A +K R+ DD VV+ L+ Sbjct: 669 VRTNPGANQQPHLGLGLYIARLIAEFHKGRIEIANRDDTKGVVVRVLIP 717 >gi|189424217|ref|YP_001951394.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420476|gb|ACD94874.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 491 Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 12/166 (7%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 + S L +L + + + H++ +P+GAI+ S+ L + G + M++I+ ++ Sbjct: 263 VQSEKLASLGKIVAGVAHEVNNPLGAINASIYNLEQKSGNQLRNMEIIKQGVERIERIVR 322 Query: 66 ----FMRLA---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAK 117 F R A S + +V V+ + + L + + + Sbjct: 323 QLSDFSRTASLELQPLASEGFFSECAEFSRVALKRFDVELVTEDRCAPALMLQLDKGKIQ 382 Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 +LLNL A + P G + +S Q + ++ G+ Sbjct: 383 QVLLNLLFNAAQASPLRGIIRLSAQLTPGYYQLEVEDQGSGIPPEA 428 >gi|114767714|ref|ZP_01446399.1| sensory box sensor histidine kianse/response regulator [Pelagibaca bermudensis HTCC2601] gi|114540286|gb|EAU43387.1| sensory box sensor histidine kianse/response regulator [Roseovarius sp. HTCC2601] Length = 594 Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 13/130 (10%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78 HD + + AI +LL D+ + + I ++ A + + LAF Sbjct: 233 HDFNNLLTAISGHCDLLMLRHDQGDPDYSDLVQISQNANRAAALVSQL-LAFSRKQTLRP 291 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLP 131 L+ L + + + +RV++ + + R+ ++++NL + A ++P Sbjct: 292 ELLDLRETLSDLTHLLNRLVGERVELVLQHDPVLPKIRGDRRQLEQVMMNLVVNARDAMP 351 Query: 132 RGGKVTISVQ 141 GG++ I + Sbjct: 352 DGGEIRIETE 361 >gi|260433982|ref|ZP_05787953.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157] gi|260417810|gb|EEX11069.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157] Length = 453 Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 17/196 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSS------MSAIIRLKFMRLAFGY 73 I HD+ SP+ + +E L++ G D + + R + + R G Sbjct: 242 IAHDLRSPLSRLKQRVEALNDPGISARDREIAIARATVEIDHVLRVLSQLTEISRAEAGL 301 Query: 74 TGSVDSLIGL----GDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRE-RAKILLNLFMVAH 127 + L D ++ E A R++V E I R ++ L NL A Sbjct: 302 GREQFETVDLCQLVKDAAELYEPVAADQGIRLEVVGRAEPIRGHRPLLSQALSNLLENAL 361 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHDIQFY 184 P G +TI ++D + S++ G A P V + + S + Sbjct: 362 RYAPEGSAITIELKDDGPFALLSVRDRGPGVPDAELPRLAMPFVTLDPARSDRSAGLGLA 421 Query: 185 YVILLAHENKIRLLPE 200 V +A + Sbjct: 422 LVAAIARMHGGTFAAR 437 >gi|254464607|ref|ZP_05078018.1| sensory box histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206685515|gb|EDZ45997.1| sensory box histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 623 Score = 38.0 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 15/158 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIR--LSSMSAIIRLKFMRL 69 ++ A + S + HD S + I ++ L+++G++ E ++++ LS+ RL R+ Sbjct: 286 EMAAQMTSGLAHDF-SNLLTIILGMQGKLEKMGLDGEAAEMVQGTLSAARRGGRL-LNRI 343 Query: 70 A--FGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120 A G LG+++ + + + + L + K+ LL Sbjct: 344 AEMTGQRTLRPQATNMHDLLGELKILASPSLPQGVGLSILDNMPDQVLLLDSGKLQDALL 403 Query: 121 NLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNL 157 NL + A + G++T+S ++ G Sbjct: 404 NLILNARDACGTSGQITVSAHAVGHTWVEITVTDTGPG 441 >gi|257142031|ref|ZP_05590293.1| two-component sensor kinase [Burkholderia thailandensis E264] Length = 389 Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 15/130 (11%) Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91 E +D + ++ LI S A R++ R+ F GS + + + + + Sbjct: 190 EEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFTDIHEGLEATL 246 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + + +L ++++NL M A ++ G +TI + + Sbjct: 247 NVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGD 306 Query: 146 ENIFSLKING 155 +++ G Sbjct: 307 GVTIAIEDTG 316 >gi|224367690|ref|YP_002601853.1| CusS [Desulfobacterium autotrophicum HRM2] gi|223690406|gb|ACN13689.1| CusS [Desulfobacterium autotrophicum HRM2] Length = 555 Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 28/172 (16%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQL--------IRL 55 L +L L S + H++ +P+ N+L E L+E G E E +Q I Sbjct: 323 KLASLGLLTSGLAHELNTPL---ANALLYTQIASEELNEAGCETEDIQARLSTVVEEIHQ 379 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 S L F R + D L + + V ++ V E+ + + R Sbjct: 380 GSKIIRNLLDFSRHSTNDAQVADVNKTLTKLMGIAGPHC-VSGKIDVQTVLEEK-MPKAR 437 Query: 116 AK------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 IL NL A ++P+GG + + + K I ++I + P Sbjct: 438 VDASTLQSILTNLVANAIEAMPQGGVLKLKTRHVKVLRIIKIEIADSGPGIP 489 >gi|114771210|ref|ZP_01448630.1| C4-dicarboxylate transport sensor protein [alpha proteobacterium HTCC2255] gi|114548135|gb|EAU51022.1| C4-dicarboxylate transport sensor protein [alpha proteobacterium HTCC2255] Length = 601 Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 22/141 (15%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVM--QLIRLSSMSA 60 + + L AL + + I H++ P+ A+ N ++LD IED + LI Sbjct: 369 VQAGKLKALGEISAGISHELNQPLAAMQNFSENGAKMLDLNKIEDARINFDLIGTQINRI 428 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGE--KIDLS 112 +K +R AF I D+++VI++ +++ K +V + W E +I + Sbjct: 429 TRIIKSLR-AF--ARKEKETIEAIDLQEVIKETLSLSKSRIDFEKVDIEWHPEDKEIMVM 485 Query: 113 RERAKI---LLNLFMVAHASL 130 ++ ++NL A S+ Sbjct: 486 GGHVRLQQVVINLLTNAIDSM 506 >gi|255035393|ref|YP_003086014.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948149|gb|ACT92849.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 710 Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 33/166 (19%) Query: 24 HDIISPIGAIHNSLELL--DEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 HD+ +PI A+ + ++L D+V E++ M I+ S LAFG G + Sbjct: 502 HDLRNPIAAMVSGSDMLFWDQVPTEEQAMIIDAIQQSGQ----------LAFGLIGQILQ 551 Query: 80 LI-----------GLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERA-KILLNL 122 L +I + D ++ R + + + + RE+ ++ NL Sbjct: 552 SSPDRKKIIKNHEDLAEIVRSCIDMLSYKGREKRQTIYYDYDEALVPVDREKIWRVFSNL 611 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 A P + + ++ + + +++ +G PE + Sbjct: 612 LSNAVKFSPVESAIQVKLRKKPDSMLLTIRDHGIG--IPEDLKGHI 655 >gi|153003674|ref|YP_001377999.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027247|gb|ABS25015.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 663 Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 19/215 (8%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK-----FMRLAF 71 + + HD+ +P+ +I + L+ E+ L+ S A R+ + LA Sbjct: 446 AEVSHDLRNPLSSIILAAAQLERSAGRSELPDLVGRRAASIRRAGDRMNHLVQDLLDLAR 505 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA-KILLNL 122 G ++ +G ++++D + + RV+ + + RER ++L NL Sbjct: 506 AENGRLELDVGEHSARELVDDAVESIAPVVRERELRVRAAVEPLLVRCDRERVHRVLANL 565 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--KFTQIVDGNVESTIDSHD 180 A PR G V ++ + + +F++ G E + ES Sbjct: 566 LSNAVKVSPRKGTVELTARQRERAVLFTVADEGPGISLDEQRHMFEHYWRGRESGAQGVG 625 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V L + ++ + + S L + Sbjct: 626 IGLSIVKTLVERHGGKVWVDSVPGAGARFSFTLPR 660 >gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] Length = 534 Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 25/218 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 I H++ +P+ I ELL + + + + I S ++ + G Sbjct: 315 ISHELRTPLTTIKGYAELLKDGTLGPVNDEQRDRLSRIDASVDRLTGIVESLSDLSGVAS 374 Query: 76 SVDS----LIGLGD-IEQVIED--FIAVDKRVQVSWTGE----KIDLSRERAK-ILLNLF 123 + + L + IE+V+ F+A K+++++ I R R + +LLN+ Sbjct: 375 RQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDVPLTLPMISADRSRIQQVLLNVL 434 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG------NVESTID 177 A P GG+++ISV+D + + +++ G E I G + Sbjct: 435 NNAIKYTPDGGQISISVRDECDHLLIAVRDTGIGI-PKEDIENIFSGFYHSGYKLSYEYK 493 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + ++ + L K Sbjct: 494 GAGLGLAISRKIVESHGGKIWADSEPGKGSTFFISLPK 531 >gi|204931274|ref|ZP_03222034.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204319889|gb|EDZ05096.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 465 Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|167615455|ref|ZP_02384090.1| probable two-component sensor kinase [Burkholderia thailandensis Bt4] Length = 389 Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 15/130 (11%) Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91 E +D + ++ LI S A R++ R+ F GS + + + + + Sbjct: 190 EEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADIHEGLEATL 246 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + + +L ++++NL M A ++ G +TI + + Sbjct: 247 NVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGD 306 Query: 146 ENIFSLKING 155 +++ G Sbjct: 307 GVTIAIEDTG 316 >gi|289626863|ref|ZP_06459817.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649143|ref|ZP_06480486.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867868|gb|EGH02577.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 468 Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +++ + D RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLDCLVEPWLNAEGDGRVTQQGEAQAAYPGKPLALRRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D+ + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLHLPR 465 >gi|332558897|ref|ZP_08413219.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] gi|332276609|gb|EGJ21924.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] Length = 758 Score = 38.0 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73 I HD + + AI +LL ++ L I ++ A L F R Sbjct: 395 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 450 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126 I L ++ + + +RV + + R+ ++L+NL + A Sbjct: 451 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 510 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182 ++P GG + I +D A P ++ I + I +Q Sbjct: 511 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 567 Query: 183 -FYYVILLAHENKIRLLP 199 F+ + + L Sbjct: 568 PFFTTKRVGEGTGLGLST 585 >gi|302338876|ref|YP_003804082.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636061|gb|ADK81488.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 391 Score = 38.0 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 18/166 (10%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLK 65 L S L L S I HDI +PI + +LL GI + M IR A + Sbjct: 169 LKSERLSTLGKFSSMILHDIRNPISVVKAYTDLLLISEGIPQKNMDYIRNIRFEAERLNQ 228 Query: 66 FM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113 RL G + L + + F + + + + + + Sbjct: 229 LANELLDYSRGEIRLDMGSVDLDGFFLRLEEWVR--RRFASRRCEITLRNGHQGPVIFDQ 286 Query: 114 ERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ER + L NL A ++ GG +++ +D+ +F++ G Sbjct: 287 ERMFRALTNLSDNARKAMTMGGSFSLTAEDNDGWLLFTVSDTGEGM 332 >gi|182413154|ref|YP_001818220.1| histidine kinase [Opitutus terrae PB90-1] gi|177840368|gb|ACB74620.1| histidine kinase [Opitutus terrae PB90-1] Length = 1278 Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 19/132 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73 I HD + + I ELL E + D ++ I+ ++ A + F R + Sbjct: 918 IAHDFNNLLTVILGQGELLTEPELSATERDTAVRDIKSAAQRASNLTRQLLVFSR----H 973 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126 + L ++ + + +RV + + + L ++LLNL + A Sbjct: 974 QAMAPIALDLNEVVAGVIKLLRHMIGERVALESSLCEGPLATLADPGMLEQVLLNLAVNA 1033 Query: 127 HASLPRGGKVTI 138 ++PRGG++++ Sbjct: 1034 RDAMPRGGRLSL 1045 >gi|192288925|ref|YP_001989530.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282674|gb|ACE99054.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1076 Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 14/178 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80 I HD + + I +++++ + + + I A R + RL + Sbjct: 686 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAELTRLLLAFARKQPLR 745 Query: 81 IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKID----LSRERAK-ILLNLFMVAHASL 130 ++ ++ + + ++V + R + + L+NL + A ++ Sbjct: 746 PDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAM 805 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFYYV 186 P+GGK+TI + + + G+LA I D + TI S ++ Sbjct: 806 PKGGKLTIETSNVVVDPDLGKR-FGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFT 862 >gi|152998343|ref|YP_001343178.1| integral membrane sensor signal transduction histidine kinase [Marinomonas sp. MWYL1] gi|150839267|gb|ABR73243.1| integral membrane sensor signal transduction histidine kinase [Marinomonas sp. MWYL1] Length = 488 Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 34/200 (17%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 L S I HD+ +PI + E+LDE I D +IR + LK G S Sbjct: 287 LFAS-ISHDLKTPITRLRLRAEMLDEDDIRD---AMIRD-LEDLDMLLK------GALQS 335 Query: 77 VDSLIGLGD------IEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA--KILLNLFM 124 V + + I +++ D + ++ V + + + A + L NL Sbjct: 336 VKET-DIHENRVEVNISRMLRDMQSTANLHGVKLTVVGELQHPFIGKPFAIKRCLGNLV- 393 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDS 178 +L G T+ ++D +NE + G + +T++ + Sbjct: 394 --DNALYYGKTATVFIEDDENEVCIRVCDQGPGIPIDKMDKVFQPYTRL-TPDHSGHPGG 450 Query: 179 HDIQFYYVILLAHENKIRLL 198 + +A + + Sbjct: 451 MGLGLSIARNIARAHGGEVT 470 >gi|83717824|ref|YP_438930.1| sensory box sensor histidine kinase [Burkholderia thailandensis E264] gi|83651649|gb|ABC35713.1| sensory box sensor histidine kinase [Burkholderia thailandensis E264] Length = 358 Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 15/130 (11%) Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91 E +D + ++ LI S A R++ R+ F GS + + + + + Sbjct: 159 EEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFTDIHEGLEATL 215 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + + +L ++++NL M A ++ G +TI + + Sbjct: 216 NVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGD 275 Query: 146 ENIFSLKING 155 +++ G Sbjct: 276 GVTIAIEDTG 285 >gi|312959223|ref|ZP_07773741.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311286483|gb|EFQ65046.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 344 Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 61/149 (40%), Gaps = 12/149 (8%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGS 76 + H+I +P+G I + +LL D + ++ +I S + +F+ A Sbjct: 129 LAHEIRNPLGIIKTATQLLHRRADLPDTDKRHLEYVISEVSRINDLITEFLDFAKPNPPL 188 Query: 77 VDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHAS 129 +E+++ + + Q+ + +++ + LNL + A + Sbjct: 189 RALQPARPLVEEILGFCAPELATHNIDAQIDDQAPGATIYADAKQLKQACLNLILNAIDA 248 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158 +P GG++T+ ++ + + S+ +G Sbjct: 249 MPDGGRLTVGIRTADGNTVISIADSGQGI 277 >gi|153005248|ref|YP_001379573.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028821|gb|ABS26589.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 400 Score = 38.0 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 27/223 (12%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSA----IIRL 64 A L S + HD+ +P+ A+ + + + ++R + L Sbjct: 163 AAFLAS-VAHDLRNPVSALKLTAAAIPPGTPLPPEPRLRRAVDVVRRQAAKLERMLNDLL 221 Query: 65 KFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAK 117 R+ G + L D + +E F R ++ + R + Sbjct: 222 DTARIEAGEVEMRVERVDLRDLVRSALELFEGTSSRHRLVSEVPDHAVPVYCDPLRIE-Q 280 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGN 171 +L NL A P GG+V S++ SK E + + +G + E F + GN Sbjct: 281 VLANLLSNAIKYSPAGGEVRASLRTSKGEAVIQVADHGIGIAERDRTAIFEPFRR--TGN 338 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + S + + Y V L + + ++ + + L Sbjct: 339 LRSAVAGAGLGLYVVRRLVEAHAGSISVASMEGVGTIFTVRLP 381 >gi|229171167|ref|ZP_04298761.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3] gi|228612345|gb|EEK69573.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3] Length = 670 Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65 LS++DL+ + + I H+I +P+ + L+LL E + + L+ A + Sbjct: 452 LSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDRANSIIT 511 Query: 66 FMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVD-----KRVQVS-WTGEKIDLSRERAK- 117 L+ G T D ++ L I I I +D K +QV ++ L+R + Sbjct: 512 EF-LSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNRNEIRQ 570 Query: 118 ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167 +L+NL+ ++ G +TIS ++ +N + +++ G R PE ++ Sbjct: 571 LLMNLYRNGLEAMSTGKTLTISTYKEGRNCVVLAVRDQGKGIR-PEVLEKL 620 >gi|116626897|ref|YP_829053.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116230059|gb|ABJ88768.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 578 Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 72/209 (34%), Gaps = 18/209 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQLIRLSS--MSAIIRL- 64 L R+ H++ +P+ + ++E + + + L+ + + R Sbjct: 367 LARRLAHELKNPLFPLQITVENMQRARDRYPEQFDEVFREGTTTLLAELAQLKQIVGRFS 426 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILL 120 F R+ +VD + + ++ E +A + +V ++ + ++L Sbjct: 427 DFARMPTPEIQAVDFHALITETLKLFEGQLAQARVREVIELDPRVGRVNADPEQMTRVLR 486 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 NL + A ++P GG +T+ + + G PE+ ++ + Sbjct: 487 NLILNAIDAMPEGGTLTVRTKALDGRMRLEISDTGQGL-TPEECDRLFTPYYTTKTHGTG 545 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + V + ++ R+ E Sbjct: 546 LGLAIVQSVVSDHGGRISVESEKGKGATF 574 >gi|120556591|ref|YP_960942.1| integral membrane sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gi|120326440|gb|ABM20755.1| integral membrane sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 678 Score = 38.0 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 68/197 (34%), Gaps = 18/197 (9%) Query: 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 R+ H++ +P+ + +SLE L + E+E Q + + +A RL+ + + ++ Sbjct: 456 RLSHELKTPVAVVRSSLENLAQGVAENERQQYLER-AATATERLRRILHSMSEAARLEQS 514 Query: 81 IGLGD---------IEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126 + + + + +D ++ ++G D ++L L A Sbjct: 515 FEDTEKEPFDLARVLAEATSAYQQLDTGHRIVYSGPTSDCVMNGSPEMLVQMLDKLVDNA 574 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--QIVDGNVESTIDSHDIQFY 184 P GG + + + + + G+ + D H Q Sbjct: 575 RDFTPEGGGIDVCLHIHDGHYLIEVFNEGSRLPDHDGVDIFGAFVSQRSGAHDGHLGQGL 634 Query: 185 Y-VILLAHENKIRLLPE 200 V L+A + R+ Sbjct: 635 LIVRLIADYHGGRVEAR 651 >gi|218675385|ref|ZP_03525054.1| integral membrane sensor signal transduction histidine kinase [Rhizobium etli GR56] Length = 694 Score = 38.0 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 13/146 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + I A R + + + GS Sbjct: 486 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 544 Query: 81 IGLG-DIEQVIEDF-----IAVDKR--VQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 D+ ++ IA+ + +++ +S + A + +LNL + A A+ Sbjct: 545 YPSPVDVASLLRGMADILEIAIGAKCHIKLDLDAGLPVVSLDAALLEQSVLNLCLNASAA 604 Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155 +P GG + I +++ + S+ +G Sbjct: 605 MPTGGVIAIGATAKEDKLLISVTDSG 630 >gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 789 Score = 38.0 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 10/123 (8%) Query: 102 VSWTGEKI-----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING- 155 + W R +IL NL A P GG+VT+ +N +F ++ G Sbjct: 525 LDWQVPTPKDRFQADPRRLRQILFNLLGNAIKFTPAGGQVTLRGWREQNRAVFQIEDTGI 584 Query: 156 --NLARFPEKFT--QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 + P F Q ++ + T + + L + + E + + Sbjct: 585 GIPQEQIPLMFQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTV 644 Query: 212 LLE 214 + Sbjct: 645 RVP 647 >gi|325108930|ref|YP_004269998.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969198|gb|ADY59976.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1628 Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 23/159 (14%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFM 67 + +A+L H++ +P+ I + L+LL ED+ + L + L Sbjct: 1238 EFLAMLA----HELRNPLAPIRSGLDLLTLESKEDQPVLLVMKEQVEHLVRLVDDLLDVS 1293 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDL-----SRERA 116 R+ G +D +++++IE + +K+ ++ + + L Sbjct: 1294 RI---MRGKIDLRKKTTELKEIIERAVEAVRWTFDEKQQTLTVSVPEESLPIFVDPVRLV 1350 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +++ NL A GG + + V+ +++E + NG Sbjct: 1351 QVVSNLLNNASKYTDPGGNIDLKVEKAEDEVRVRVLDNG 1389 >gi|254523393|ref|ZP_05135448.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720984|gb|EED39509.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 377 Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 74/219 (33%), Gaps = 17/219 (7%) Query: 11 SMDLVALLCSRICHDIISPIGAI-----HNSLELLDEVGIEDEVMQLIRLS----SMSAI 61 ++ L + + + HD+ +P+ AI +LEL ++ + +Q + S + Sbjct: 152 ALKLNETMAAVLTHDLRTPLSAILLCADKLALELPEDNAGAQQTLQHLEASTLRMARMVE 211 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F R+ G S L ++ + +R++ L + ++ Sbjct: 212 QLLDFSRIRSGGLRLETSACDLAEVTHAVIAEAGSAHGHERIRFD-AIGDTRLQGDMDRL 270 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 + +L G + + + D ++ ++++ ++ + S S Sbjct: 271 GQIAANLVGNALTHGSEALVQL-DGRDARTVVMRVSNTGHIDDALLPRLFEPFKASFHQS 329 Query: 179 H--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + Y V + R+ VV A L + Sbjct: 330 KGLGLGLYIVDQFVRAHGGRIGARNEAGQ-VVFEAKLPR 367 >gi|281355653|ref|ZP_06242147.1| integral membrane sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281318533|gb|EFB02553.1| integral membrane sensor signal transduction histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 546 Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 16/210 (7%) Query: 22 ICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 I HD+ +PI I EL L+ + + + + + + +G Sbjct: 327 IAHDLRTPITRIRGKAELAVLNPEDSSELAGDVAEECAEMLTMINTMLEITQTESGIAQD 386 Query: 80 LIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSR--ERAK---ILLNLFMVAHA 128 D+ + + A DK + + LS + K +L NL A Sbjct: 387 DFDDLDLTALTAAVLELFSTVAEDKGITLHQELPAQPLSACGNKVKYQRLLANLLDNAIK 446 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185 P GG V++ ++ +E + G + F + + ++ + + Sbjct: 447 FTPSGGTVSVRLEPGDSEFTLRISDTGCGIPPEARSHIFERFYRSDSSRSLPGNGLGLSL 506 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V + + E + L + Sbjct: 507 VKAIVSVAGGTIEVESEVNRGTTFLVTLPR 536 >gi|283852334|ref|ZP_06369605.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572291|gb|EFC20280.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 480 Score = 38.0 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 28/229 (12%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGI--EDEVMQLIRLSSMSA--- 60 L + + AL + + H++ +PI I +++ LL++ +D+ +L+ + A Sbjct: 240 LQARKMAALGTFTAGVAHELNNPINNITLTVDALLEDHADYLDDDGRELVADIAGQADRA 299 Query: 61 ----IIRLKFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107 L F R A S +L+ Q++ +AV +VQ Sbjct: 300 ADIVRNLLDFSRTERPPLLPLAARDVAASSLALVR----NQLLGAGLAVAMQVQEDLPPI 355 Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + DL R ++L+N+ + A + PRGG+VT+SV +N + PE + Sbjct: 356 RGDL-RSLQQVLVNILLNAVQATPRGGRVTLSVAAGENGETCFAVADSGPGVSPEVRQHM 414 Query: 168 VDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L + R+ E + V + L Sbjct: 415 FEPFYTTKGVGKGTGLGLAVAYSLTRRHGGRIEVESPETGGAVFTVCLP 463 >gi|70730899|ref|YP_260640.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345198|gb|AAY92804.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 642 Score = 38.0 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 19/144 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + I +LELL + +D ++ + +++ R L F R Sbjct: 288 IAHDFNNLLTVIRGNLELLHKRVGDDPRLRRLLDNALQGTERGVTLTQRMLAFAR----R 343 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKI------LLNLFMVA 126 + LG + + + +++ E DL +A + LLNL A Sbjct: 344 QELKSQALDLGQLVASLSGLLCSSVGPRIALRVEMAPDLPAVQADLNQLELALLNLVSNA 403 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P GG + I Q + Sbjct: 404 RDAMPEGGSILIEAQLRGATGNLA 427 >gi|254425827|ref|ZP_05039544.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188250|gb|EDX83215.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 708 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 79/198 (39%), Gaps = 35/198 (17%) Query: 24 HDI---ISPIGAIHNSLEL-LDEVGIE-DEVMQLIRLSSMSAIIRLK----FMRLAFGYT 74 HD+ ++PI I L L L++V E + ++ S+ ++ F + Sbjct: 473 HDLSNILTPILGIAQLLRLTLNDVDTSTQEQLDILEQSAKRGAKMVRQILTFAKGDLDPQ 532 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERA-------KILLNLFMV 125 + D ++ L ++ V + ++ E+ L RE A ++ +NL + Sbjct: 533 TTADVIVLLQEVINVAQQGFPDSIEIRFDIPTEEDIDRLHREVAIDSTRLHQVFMNLCVN 592 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A ++ GG +T+S+ I+ N A + +++ G + H Y Sbjct: 593 ARDAMVEGGVLTVSID----------TIDVNEASINK--DEVITGKDIEMLAGH-----Y 635 Query: 186 VILLAHENKIRLLPEIID 203 +++ + + + PE+ D Sbjct: 636 IVVTVADTGVGIAPEVRD 653 >gi|170723372|ref|YP_001751060.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida W619] gi|169761375|gb|ACA74691.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida W619] Length = 484 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 76/211 (36%), Gaps = 24/211 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 + L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K + Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERMQAKFSQDLDELELL---VKGALQCVKDTDI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + L + +++ + D R+ V + A + + NL Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFY 184 ++ G + + + DS + + +G R + F + + + Sbjct: 393 NAIKYGKRARLRIIDSAEGFVLQVDDHGPGVPQQRLEQVFEPHF--RLAGQQQGYGLGLG 450 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +AH + + + + + ++ L + Sbjct: 451 IARNIAHSHGGEVSLLNLREGGLRVTLHLPR 481 >gi|66576246|gb|AAM72605.2| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 358 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 70/158 (44%), Gaps = 23/158 (14%) Query: 22 ICHDI---ISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 I HD+ ++P+ E+L E + +++I +++ A ++ + LAF Sbjct: 5 IAHDLNNLLTPVLGYS---EMLSNSFPETDKRHKRIEVIHHAALRARGLVQQL-LAFSSR 60 Query: 75 GSVD-SLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126 +++ ++ L D EQ++ I D ++ ++ + + +I ++NL + A Sbjct: 61 QTLEFRMLDLNRVVRDFEQLLRRTIRDDINIRYHLHDGRLVIQGDVGQIKQIIMNLAVNA 120 Query: 127 HASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160 ++P GG++T+ V E F +G+ A Sbjct: 121 EDAMPSGGELTVKTSTMVIGKGQEKYFEGLPSGDYAVL 158 >gi|87198057|ref|YP_495314.1| periplasmic sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87133738|gb|ABD24480.1| periplasmic sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 450 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 13/145 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSV 77 I HD+ +P+ + + +L+D+ I LI S+ L +++R A Sbjct: 249 ISHDLRTPLSRVMIAADLVDDAEIAG----LIHDSTAEMEAMLMSLQQYLR-AQHLAADP 303 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 +++ I +++ A R ++ + R +LL L + ++ GGK Sbjct: 304 EAMDLGVAIADLLQG--AFPGRTELI-VAPHAVVRTWREPLLLALRPLVENAVQHGGKAR 360 Query: 138 ISVQDSKNENIFSLKINGNLARFPE 162 ++V E +++ I N PE Sbjct: 361 VTVA-PDAEGHWTVTIADNGPGIPE 384 >gi|325661562|ref|ZP_08150186.1| hypothetical protein HMPREF0490_00920 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472089|gb|EGC75303.1| hypothetical protein HMPREF0490_00920 [Lachnospiraceae bacterium 4_1_37FAA] Length = 343 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 7/109 (6%) Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQ 166 SR ++ L NL A P GG + ++VQD + ++ G PE F + Sbjct: 236 SRWTSEALFNLLDNAVKYTPEGGDIHVTVQDWEMYLEIAVTDTGRG--IPESVQATIFKR 293 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +D I Y + + E S L + Sbjct: 294 FYREEAVHDVDGIGIGLYLAREIITMQGGYITVESEVGKGSTFSIFLPQ 342 >gi|71737382|ref|YP_273735.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557935|gb|AAZ37146.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325409|gb|EFW81474.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str. B076] Length = 394 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 25/212 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMVAHA 128 S+ +++ +E ++ +RV E+I ER A++L NL Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLV---SN 298 Query: 129 SLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQ 182 ++ G + + V ++F L + PE + I + Sbjct: 299 AISHGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDEPQAGLGLG 358 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y +A + L + V + + Sbjct: 359 LYIASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390 >gi|39995481|ref|NP_951432.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39982244|gb|AAR33705.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 500 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 6/124 (4%) Query: 96 VDKRVQVSWTGEKIDLS-RERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 ++R+ V+ R ++L N A ++P GG +T+ + F Sbjct: 373 DEQRIAVATEIPPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFH 432 Query: 151 LKINGNLARFPEK-FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 L P + +I S + + E+ +L E Sbjct: 433 LTFTDQGVGIPPEDLPKIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTF 492 Query: 210 SALL 213 + +L Sbjct: 493 TVIL 496 >gi|148265388|ref|YP_001232094.1| histidine kinase [Geobacter uraniireducens Rf4] gi|146398888|gb|ABQ27521.1| histidine kinase [Geobacter uraniireducens Rf4] Length = 249 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 77/205 (37%), Gaps = 25/205 (12%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61 + + FN +L +L + + H++ SP+ I ++ ++ L E + + V +++ + A Sbjct: 21 EQLAFNEKMAELG-MLSTGMVHELNSPLSVIVSAAQMILREEDLPEFVKEMVERIGLEAQ 79 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRV-----QVSWTGEKIDL 111 F R + +++ D+ V+++ +A KR + + I Sbjct: 80 RLSYFTRSLLSFARKEEAVEAEADVNLVLQEVMAFLKYEAQKRSISVIEEKDYGLPPIAA 139 Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 R K + NL M A ++ GG + + + + ++ G Sbjct: 140 DGNRLKQVFINLIMNALQAMEEGGTLLLKTALTDDGRFLEAQVADTGR-----------G 188 Query: 171 NVESTIDSHDIQFYYVILLAHENKI 195 ++ H + +Y +A E Sbjct: 189 IAAEAVE-HIFEPFYTTKVAGEGTG 212 >gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 456 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 23/215 (10%) Query: 24 HDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAII----RLKFMRLAFGY 73 HD+ +P+G ++ ++LL + + EVM ++ + L + G Sbjct: 230 HDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVAERMSALVEDLLDVSAIESGQ 289 Query: 74 TGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 + L Q + IA K +++ + SR ++L NL Sbjct: 290 LELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPLPTVAVDSRRLGQVLDNLIAN 349 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182 A PR +T+ + S+ G E F G+ T D Sbjct: 350 AVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQLFQPFRRGSNAPTADEKSTG 409 Query: 183 FYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215 I+ L + ++ + + L + Sbjct: 410 LGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPR 444 >gi|302338223|ref|YP_003803429.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635408|gb|ADK80835.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 387 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 25/165 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAI 61 +L +L L + + H+I +P+G+I ++L+ D + ++ Sbjct: 154 NLASLTTLAAGVAHEIKNPLGSIGIHIQLMQRSLDRDGCLDREHGLEYLDIMEEEVERLN 213 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQV-----SWTGEKID 110 + A +++ + D+ VI D + + VQV + Sbjct: 214 GIVVDFLFA---VRPMNTELKQADVNAVIHDLLQFTKYELQEGGVQVVEEYDDGVPKVEL 270 Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + LLN+ A A++P GG +T++ ++ ++ G Sbjct: 271 DEKYLKQALLNIIKNAQAAMPDGGSLTVTTGFKDDQVTIAIADTG 315 >gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1014 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAF 71 S + H+ +P+ + LE +L + + + + + +A L+ F RL Sbjct: 375 SNVSHEFRTPLTLMLGPLEDVLASGTLPEAAARELDVVHRNATRLLRLVNTLLDFSRLEA 434 Query: 72 GYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLF 123 G + + L + F +V +R ++ T + L KI+LNL Sbjct: 435 GRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLL 494 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDS 178 A G +T+ ++ + + G P F + G T + Sbjct: 495 SNAFK-FTFQGTITVRLRARTGQAWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEG 553 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V LA + E ++ + +L + Sbjct: 554 TGIGLALVQDLARLQGGEVRVESVEGQGSCFTVVLPE 590 >gi|13471113|ref|NP_102682.1| robable sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] gi|14021857|dbj|BAB48468.1| probable sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] Length = 282 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 83 LGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTIS 139 L + V+ + ++ R+ + + + RE + LLNL + A ++P GG ++I+ Sbjct: 131 LEQFQVVLANVLSPSIRLTLHVAGSLPLAFIDRELVERALLNLVLNARDAMPAGGDISIA 190 Query: 140 VQ 141 Sbjct: 191 AA 192 >gi|94968839|ref|YP_590887.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94550889|gb|ABF40813.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 553 Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 26/235 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIH--NSLELLDEVGIEDEV---MQLIRLS 56 + ++ +L A S + HD+ +P I + L L ++ ++ I S Sbjct: 311 QRTAQLQEANQELEAFSYS-VSHDLRAPFRHISGFSDLLLRHLTNTDETTRHYVRTIAES 369 Query: 57 SMSAIIR----LKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSWTGEKI 109 + A L F R+ + S I + +++V+ D + + WT + Sbjct: 370 AQYAGALVDNLLAFSRM----SRSQLRWIPVDMNLLLKEVVRDVMREANGRVIHWTLPDL 425 Query: 110 DL---SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + K+ + NL A + + V ++ N + + N F EK+ Sbjct: 426 PIVFADGAMLKLAMRNLLANAVKYTRHKAEADVEVGVREHANEWEFWVKDNGVGFDEKYA 485 Query: 166 QIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + G + + I V + + R+ E + D L K Sbjct: 486 DKLFGVFQRLHRMEEFEGTGIGLASVRRIVQRHGGRVWAEGVVDEGAAFYFTLPK 540 >gi|261419856|ref|YP_003253538.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319766670|ref|YP_004132171.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261376313|gb|ACX79056.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317111536|gb|ADU94028.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 430 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 66/159 (41%), Gaps = 10/159 (6%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMSAII 62 + M +V+ + + I H+I +P+ + ++LL + + IR A Sbjct: 199 MKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEELERAEA 258 Query: 63 RLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRE---RA 116 ++ ++ A + + ++++V++ +A + VS + E + Sbjct: 259 IIRDYLTFAKPAPKETEPIDVAVELQKVLQMITPMAHMHSIHVSSSLEHGVVIGNVQYFQ 318 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + LNL + ++P GG + ++ ++ + ++ NG Sbjct: 319 QCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNG 357 >gi|326319280|ref|YP_004236952.1| integral membrane sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376116|gb|ADX48385.1| integral membrane sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 518 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 12/198 (6%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 + HD+ SPI + E+L+ + + ++ L +R A G G S+ Sbjct: 303 VSHDLRSPITRLRLRTEMLESDALRAKFRADLQEMESMVSATLDVLRGA-GTPGPRQSVD 361 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141 + +++D + L + L + +L G V + ++ Sbjct: 362 IDALVGSLVQDLHESTGQAIPVHGMAHAPLPGYAQSLRRCLQNLLENALRYAGSVQVQIE 421 Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFYY----VILLAHENKI 195 D+ E +++ G P +++ E + ++ F ++A + Sbjct: 422 DTARELAITVRDGGPGI-APAHLPHVLEPFYRAEGSRNAASGGFGLGLSIADMVARAHGG 480 Query: 196 RLL----PEIIDDHNVVL 209 RL PE D +VL Sbjct: 481 RLELANRPEGGLDARLVL 498 >gi|170693035|ref|ZP_02884196.1| integral membrane sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] gi|170142033|gb|EDT10200.1| integral membrane sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] Length = 799 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 19/211 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSV 77 + HDI SP AI +E G + + + L A L +F+ LA Sbjct: 585 LSHDIRSPQAAILALIEQRRHAGADLPESRFVELVGHYAQWSLSLADQFLLLA--RAEGR 642 Query: 78 DSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAH 127 D+ ++ D + A K+ V E L A + NL A Sbjct: 643 PPAASTVDLALLLGDAVDDLWPQASAKQTSVHLAAEPGMLVVADAPLLRRAFANLIDNAI 702 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFY 184 PR VT++ + ++ G+ P FT+ + H + Sbjct: 703 KFSPRSATVTVTAGERGERWAVTVADTGSGIPADQIPNLFTEFFRLPSDHPATGHGLGLA 762 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + E H + + LL K Sbjct: 763 FVKHVIDTLGGHIDVESEVGHGSLFTLLLPK 793 >gi|167892947|ref|ZP_02480349.1| sensor histidine kinase [Burkholderia pseudomallei 7894] Length = 257 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91 +D + +++ LI S A+ R++ F R +G + L + Sbjct: 48 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 102 Query: 92 DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + E L + +++ +NL + A S+ G +TI + Sbjct: 103 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 162 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203 S+ G + +I D + I + + R+ E Sbjct: 163 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 221 Query: 204 DHNVVLSALLE 214 L+ L Sbjct: 222 GRGSTLTVTLP 232 >gi|330863452|emb|CBX73571.1| sensor protein creC [Yersinia enterocolitica W22703] Length = 475 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 25/154 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLK--------FMRLAFGYT 74 H++ SP+ AI + ELL E + LI R++ RL Sbjct: 265 HELKSPLAAITGAAELLRESPPPATAQRFLIN--IEQQSARIQQLVDKMLIQARL----E 318 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124 VD + +I +I+ + + VS + + A + L NL Sbjct: 319 SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTNLID 378 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG+VT+S +E + +++ G+ Sbjct: 379 NALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGI 412 >gi|298504481|gb|ADI83204.1| sensor histidine kinase, HAMP domain-containing [Geobacter sulfurreducens KN400] Length = 471 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 6/124 (4%) Query: 96 VDKRVQVSWTGEKIDLS-RERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 ++R+ V+ R ++L N A ++P GG +T+ + F Sbjct: 344 DEQRIAVATEIPPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFH 403 Query: 151 LKINGNLARFPEK-FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 L P + +I S + + E+ +L E Sbjct: 404 LTFTDQGVGIPPEDLPKIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTF 463 Query: 210 SALL 213 + +L Sbjct: 464 TVIL 467 >gi|239908052|ref|YP_002954793.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239797918|dbj|BAH76907.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 379 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 14/143 (9%) Query: 24 HDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMR-LAFGYTGSVDSL 80 HDI++ + + EL+ +E G + + L+ + ++ R L F G + Sbjct: 173 HDILNLVSGMQGVCELMREEEEGTRNAELDLLLFAVERVNDLIQAQRDLTFAERGDYEVA 232 Query: 81 IGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRERAKILLNLFMV-----AHAS 129 + ++ D A+ +R ++ E D+ + LL +V A + Sbjct: 233 VNKMGSLSLLADITALMRRDSSCKGKNLAVAPESEDVFFASDRKLLTRILVNFQKNALEA 292 Query: 130 LPRGGKVTISVQDSKNENIFSLK 152 P GG VT + F ++ Sbjct: 293 TPAGGVVTAGCDRQDGQVRFWVR 315 >gi|254466604|ref|ZP_05080015.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] gi|206687512|gb|EDZ47994.1| periplasmic sensor signal transduction histidine kinase [Rhodobacterales bacterium Y4I] Length = 202 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 23/198 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 S + HD+ +P+ + L +LDE ++ + L F R G S Sbjct: 3 SGVSHDLRTPLTRMKLELAMLDEEDAAPM-LRDVDEMQALLDAFLDFSR---GAAVSEPE 58 Query: 80 LIGLGDIEQ-VIEDFIAVDKRVQVS---WTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + ++ + +I D+ + +V + GE + + + + NL ++ G + Sbjct: 59 PVDPHELVRIIIADWQRQENQVSLGEMSGAGEVMLRRQPVRRAVENLI---SNAVRYGTR 115 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---------FYYV 186 +SV ++ ++ +G PE+ + + +D Q V Sbjct: 116 ARVSVALTERSLRIRVEDDGPGI-PPEQRGDAI--RPFTRLDPARNQNRGSGVGLGLAIV 172 Query: 187 ILLAHENKIRLLPEIIDD 204 A + L D Sbjct: 173 ADTARAHGGTLRLGESPD 190 >gi|332160503|ref|YP_004297080.1| sensory histidine kinase CreC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664733|gb|ADZ41377.1| sensory histidine kinase CreC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 475 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 25/154 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLK--------FMRLAFGYT 74 H++ SP+ AI + ELL E + LI R++ RL Sbjct: 265 HELKSPLAAITGAAELLRESPPPATAQRFLIN--IEQQSARIQQLVDKMLIQARL----E 318 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124 VD + +I +I+ + + VS + + A + L NL Sbjct: 319 SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTNLID 378 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG+VT+S +E + +++ G+ Sbjct: 379 NALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGI 412 >gi|229101139|ref|ZP_04231905.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28] gi|228682267|gb|EEL36378.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28] Length = 672 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65 LS++DL+ + + I H+I +P+ + L+LL E + + L+ A + Sbjct: 452 LSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDRANSIIT 511 Query: 66 FMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVD-----KRVQVS-WTGEKIDLSRERAK- 117 L+ G T D ++ L I I I +D K +QV ++ L+R + Sbjct: 512 EF-LSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNRNEIRQ 570 Query: 118 ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167 +L+NL+ ++ G +TIS ++ +N + +++ G R PE ++ Sbjct: 571 LLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDQGKGIR-PEVLEKL 620 >gi|198245723|ref|YP_002218089.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205357423|ref|ZP_02347567.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197940239|gb|ACH77572.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321829|gb|EDZ09668.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 465 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +++ ++S + + + P++ I + Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTPYFTTKA 420 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + + I+ V + L Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458 >gi|88797216|ref|ZP_01112806.1| sensor histidine kinase [Reinekea sp. MED297] gi|88780085|gb|EAR11270.1| sensor histidine kinase [Reinekea sp. MED297] Length = 507 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 16/146 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLKFMRLAFGYTGSVD 78 + HD+ +P+ + SLELLD + I L F +L G + Sbjct: 301 VSHDLKTPLARLRFSLELLDLPDDNPYRQNMNRDIEQLVQLTEELLLFHQL--GSPEATP 358 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRG 133 + + L + E ++ D + +++ K L R +++ NL ++ G Sbjct: 359 APMDLTAL--TTERLVSFDSQGEITSELPKAPLSATIQPRHWTRLIDNLL---SNAVQYG 413 Query: 134 -GKVTISVQDSKNENIFSLKINGNLA 158 G+V + + S+N S++ NG Sbjct: 414 RGRVHLRLATSENGVRLSVEDNGPGM 439 >gi|196228677|ref|ZP_03127543.1| histidine kinase [Chthoniobacter flavus Ellin428] gi|196226958|gb|EDY21462.1| histidine kinase [Chthoniobacter flavus Ellin428] Length = 547 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 74/218 (33%), Gaps = 28/218 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----------SSMSAIIRLK-FMRLA 70 +CHD + + AI ELL + + +L+R + + RL+ F R Sbjct: 187 VCHDFNNALMAIIGYTELLLQNAELIDDRELLREYLKTMNIAGRDASHVVSRLRDFYRPR 246 Query: 71 FGYTGSVDSLIGLGD-IEQVI--------EDFIAVDKRVQVSWTG---EKIDLSRERAK- 117 V + + + D IE+++ + + ++V + + + Sbjct: 247 --EENDVFTAVDVNDLIEEIVPLTKPKWHGQALESGRTIRVDLELQKLPPVLGNSSELRE 304 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TI 176 L+NL A ++P+GG +T+ ++ + G E + ++ + Sbjct: 305 TLMNLVFNAVDAMPKGGTITLRTVPLEDAIRIEVADTGTGM-TEEVRQRCLEPFFSTKGD 363 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + ++ + E + L Sbjct: 364 DGTGLGLAMSFGIVRRHEGTMDIETVLGEGTTFVITLP 401 >gi|167629027|ref|YP_001679526.1| sensor histidine kinase domain protein [Heliobacterium modesticaldum Ice1] gi|167591767|gb|ABZ83515.1| sensor histidine kinase domain protein [Heliobacterium modesticaldum Ice1] Length = 659 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 19/173 (10%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL- 64 L ++LVA + + I H+I +P+ + L++L DE+ E L+ A + Sbjct: 425 LDRLNLVAQMAAGIGHEIRNPMTTVRGFLQILRAKDELANHWEHFDLMIEELDRANAIIS 484 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKIDLSRE 114 +F+ LA + L ++ +I R+++ E +E Sbjct: 485 EFLSLA----KHKVDDLRLQNLNAIIRALYPLLEADASLGKKAIRLELGPIPETYLGEKE 540 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 +++LNL ++ GG++ I + + ++ G+ P+ Q+ Sbjct: 541 IRQLVLNLVRNGLEAMGEGGELIIRSYREGDAVVLAVCDQGSGIS-PDALAQL 592 >gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199] gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199] Length = 414 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 28/207 (13%) Query: 24 HDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSA----IIRLKFMRLAF 71 H++ +P+ AI EL+ + I S + L F R+ Sbjct: 193 HELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATD-INDSGLHLLDLINDILDFSRVEM 251 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAV--DKR-----VQVSWTGEKIDLSRERAKILLNLFM 124 G D I + D+ + IA ++R V+VS + R ++LLNL Sbjct: 252 GKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRVSGSPILTADRRAMRQMLLNLLS 311 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--ESTID----- 177 A P GG+VTI+ D + ++ + P + + + + I Sbjct: 312 NAVKHTPPGGRVTIT-SDVDGQGGLAIVVEDTGRGIPAERLEWITEPFNVDEEISVTRQG 370 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDD 204 + L + ++ + + Sbjct: 371 GAGLGLAITKRLVERHGGQISIDSSEG 397 >gi|149923317|ref|ZP_01911725.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149815797|gb|EDM75319.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 639 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 16/176 (9%) Query: 17 LLCSRICHDIISPIGAI--HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMR--LAF 71 LL + HD + + AI H + L+ G+ E ++ + A R + R L F Sbjct: 272 LLAGGLAHDFNNLLVAIMGHTGMLRLEAEGLSREALEDL-DGLDEAAARARELTRQLLTF 330 Query: 72 GYTGSVD-SLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123 G +++ S + LG + ++ + R + E + L +RA++ ++NL Sbjct: 331 GRAQAMELSEVELGAALRQSWRLLGRLLPSSIRKLLVIEDEALRLVVDRAQLEQVVMNLC 390 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 + A ++P GG++ + ++ + A P +F QI + I Sbjct: 391 INARDAMPEGGELEVRLR--RVALSAEALGAEREAVEPGEFAQISVRDTGEGIAPA 444 >gi|94310593|ref|YP_583803.1| sensory histidine kinase CreC [Cupriavidus metallidurans CH34] gi|93354445|gb|ABF08534.1| sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon [Cupriavidus metallidurans CH34] Length = 481 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 24 HDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 H++ SP+ AI + ELL E + IR + + ++ + LA Sbjct: 265 HEMKSPLAAIGGAAELLQEDMPTADRQRFLGNIRSQAQRLDLLIRKL-LAL-AEVEQRQR 322 Query: 81 IGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDLSRERA-------KILLNLFM 124 + + ++ ++ A + V + W S + + + ++NL Sbjct: 323 LEKREPVRLAQEIEHILASLEPRARQRGVSLHWQPPAQGQSFDVSGDVFLLRQAIVNLIE 382 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 A P G V + ++ +++ +L+I PE Sbjct: 383 NALDFAPSGTDVDVVLEPGPHQDQITLRIEDRGPGIPE 420 >gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 975 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 22/217 (10%) Query: 20 SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAF 71 S + H+ +P+ + LE +L + + + + + +A L+ F RL Sbjct: 336 SNVSHEFRTPLTLMLGPLEDVLASGTLPEAAARELDVVHRNATRLLRLVNTLLDFSRLEA 395 Query: 72 GYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLF 123 G + + L + F +V +R ++ T + L KI+LNL Sbjct: 396 GRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLL 455 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDS 178 A G +T+ ++ + + G P F + G T + Sbjct: 456 SNAFK-FTFQGTITVRLRARTGQAWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEG 514 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I V LA + E ++ + +L + Sbjct: 515 TGIGLALVQDLARLQGGEVRVESVEGQGSCFTVVLPE 551 >gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] Length = 1051 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 22/216 (10%) Query: 20 SRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAF 71 S I H++ +P+ I L ELLD+ + + ++R + +A L F + Sbjct: 324 SNISHELRTPLALILGPLQELLDDPSLGSDQHTVLRTARRNAMRLLTLVNDVLDFTSVDS 383 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVSWTGEKIDLSRER-------AKILLNLF 123 G T + L + + V ++ E L +I+ NL Sbjct: 384 GRTRARYQPTDLTAQTAELAGVFRSSMESVGLTLRVEGEPLPEPVHLDRHMWERIVFNLL 443 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI--VDGNVESTIDS 178 A GG VT+ V+ + + ++ G P F + V G+ + + Sbjct: 444 SNALKHTFAGG-VTVGVRPGEGHAVVTVSDTGVGIPGHEIPNLFERFHRVSGSPSRSHEG 502 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I L + R+ + + L Sbjct: 503 TGIGLALARELIALHGGRIEADSRLGEGTTFTITLP 538 >gi|209963475|ref|YP_002296390.1| Nitrogen regulation protein NtrB [Rhodospirillum centenum SW] gi|209956941|gb|ACI97577.1| Nitrogen regulation protein NtrB [Rhodospirillum centenum SW] Length = 375 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 86/211 (40%), Gaps = 21/211 (9%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAF 71 + A+L H++ +P+ I + +LL+E +E++ + +LI + + + R+ Sbjct: 145 MAAMLA----HEVKNPLSGIRGAAQLLEESVVEEDRLLTRLICDETDRIVALVD--RMEV 198 Query: 72 GYTGSVDSLIG------LGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRER-AKILLNL 122 L + ++ ++ A R + + + +R++ ++LLNL Sbjct: 199 FADRRPVQKAAINIHSVLEHVRRIAQNGFARHIRFVERYDPSLPPVLGNRDQLIQVLLNL 258 Query: 123 FMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHD 180 A + P +GG++ +S ++ + + P + +G+ + I ++ Sbjct: 259 VKNAAEACPEQGGEIVLSTAYQHG-VRLAVAGSDSRVHLPLLVSVQDNGDGIPEDIQANL 317 Query: 181 IQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + L + L+ +I+ DH V+ Sbjct: 318 FDPFVTTKLNGTGLGLALVAKIVGDHGGVIE 348 >gi|322434336|ref|YP_004216548.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321162063|gb|ADW67768.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 526 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 13/168 (7%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQL----IR 54 ++ + + + L + I H+I +P+ AI N L L+ + + + + L + Sbjct: 279 SEEVLRRTEKLAVAGRLAASIAHEINNPLEAITNCLYLVGKTELPPDARTYLALAQDELD 338 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDL 111 + + L+F R + + +L L + + +R+ + I Sbjct: 339 RVAQITVQTLRFYRRSTHAADT--NLHDLIETVAALLGSRMNRQRITLVRKFGEIPPIFA 396 Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + +L NL A +LP GG +T+ S++ I ++A Sbjct: 397 HDGEIRQVLANLVGNAIDALPNGGVITLRTGLSRDWKTGRTGIRISVA 444 >gi|162456212|ref|YP_001618579.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161166794|emb|CAN98099.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 558 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 2/124 (1%) Query: 92 DFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 D V RV+V G ++ L + + LLNL A ++P+GG++ +SV S + Sbjct: 421 DRAGVAVRVEVEEAGPELLLDESQIRQALLNLLRNAREAMPKGGEIVVSVSFSSGAATIA 480 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + G E I D + + + + + E + Sbjct: 481 VDDTGPGV-PEELRASIFDPFFTTKQRGTGLGLAVTRDIIEAHGGTISCEPREAGGTRFR 539 Query: 211 ALLE 214 L Sbjct: 540 IALP 543 >gi|316931525|ref|YP_004106507.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599239|gb|ADU41774.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1071 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 66/178 (37%), Gaps = 14/178 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80 I HD + + I +++++ + + + I A R + RL + Sbjct: 683 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGSELTRLLLAFARKQPLR 742 Query: 81 IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLS--RERAKI---LLNLFMVAHASL 130 D+ ++ + + ++V +R ++ L+NL + A ++ Sbjct: 743 PDETDVNALLAGLQSLLRPTLGEPIEVETMLAPDTWPIYVDRGQLESALVNLAVNARDAM 802 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV--DGNVESTIDSHDIQFYYV 186 P+GGK+TI + ++ ++ G+LA I + +I S ++ Sbjct: 803 PKGGKLTIESCNVVVDSDLGKRL-GDLAPDDYVMIAIADTGSGIPESIRSKVFDPFFT 859 >gi|322418457|ref|YP_004197680.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124844|gb|ADW12404.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 369 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 14/218 (6%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIR 63 + L AL L + + H+I +P+ +I + E+L E G L++ S + Sbjct: 149 AERLSALGELSAILAHEIRNPLASIRGTAEILMEEGTPAPRRGEFLEILVKESDRLNRVV 208 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117 F+R+A ++ ++ A + V L R A + Sbjct: 209 EDFLRMARPEPADKRECDINEELGNMVTLLSAQARGSNVRLELSCGALPRLVADPEKLRQ 268 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTI 176 +N+ + A + P GG+V ++ ++ + I + + Sbjct: 269 AFMNIMLNAIQASPEGGRVLVATSCDPKAGSVEIRFCDEGVGIAADAIAHIFEPFFTTKG 328 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L E +L Sbjct: 329 SGTGLGLPITRKIIEGHGGTLEVESGPGRGATFKVILP 366 >gi|255038918|ref|YP_003089539.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254951674|gb|ACT96374.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 291 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 23/169 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLA------ 70 HD+ +G I ++ +LL G + LI++ + L + RL Sbjct: 75 HDLRGQVGVIASATQLLGMAGNATDSNVLIQMIQRNIGQMTHLMSNLLDYARLESGQEAI 134 Query: 71 ----FGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F + LI + ++ + + + + + R ++LN Sbjct: 135 HVSRFNVAELLQELIDGTEAFASERQLWLRSNGPDALEIDSDPVQIRRIAQNLVLNALKY 194 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 G VT+S Q ++ N + L ++ + + G Sbjct: 195 TTT-----GGVTVSWQSLEDANGWQLTVSDTGPGLSAQQISRLTGQTSE 238 >gi|153003492|ref|YP_001377817.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027065|gb|ABS24833.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 518 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMS---- 59 + L A+ + ++I H+I +P+ AI + ELL E E +QL+ S Sbjct: 281 AERLAAVGRISAQITHEIRNPLNAIGLNAELLAEELAELDVPPREALQLVSAISREVDRL 340 Query: 60 ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEK--IDL 111 A L+F RL + L +I + DF+ + R+++ + Sbjct: 341 NGVAEEYLRFARL----PKPALARQDLNEILSGLLDFLGPELAAARIELERALAAGLPAV 396 Query: 112 SRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + ++ LNL + ++P GG VT+ + + + G P T+I Sbjct: 397 QADEGQLRAVFLNLLRNSREAMPSGGTVTVRTRRVGDAIEAEVSDTGGGI-PPGDLTRIF 455 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E+ + + L Sbjct: 456 EAFYSTKERGTGLGLAFTRQVVVEHGGSIRCDSTVGQGTTFVVRLP 501 >gi|94271292|ref|ZP_01291927.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93450492|gb|EAT01658.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 461 Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + LLNL M A ++P GG++T+S + +++ ++ G PE Sbjct: 363 QALLNLVMNAIEAMPAGGQLTLSSRRLEDQVEIGVRDTGGG--IPEAI 408 >gi|320352828|ref|YP_004194167.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121330|gb|ADW16876.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 525 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 70/177 (39%), Gaps = 33/177 (18%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM-SA 60 + L +L + + + H+I +P+G + ++ E+L G E ++ +S A Sbjct: 302 EAQRLASLGKMVAAVSHEIKNPLGIVRSTAEILGNRISKVAPGNERLANIIVEETSRLDA 361 Query: 61 IIR--LKFMRLAFGYTGSVDSLIG--LGDIEQVIEDFIAVDK--------RVQVSWTGEK 108 I+R L F R + G + V+E + + R++V Sbjct: 362 IVREFLDFAR---------PREVDKVPGSLNGVVERLLRFMEPEFQQKAVRLEVRLDPNL 412 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ + ++LLN+ A ++P+GG + ++ ++++ + P Sbjct: 413 PEIPFDSEQIYQVLLNIVFNAIQAMPQGGDLLLNTMLEPGGGAVAVEVADSGIGIPP 469 >gi|309779207|ref|ZP_07673970.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308922011|gb|EFP67645.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 373 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 25/214 (11%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIED---EVMQLIRLSSMSAI----IRLKFMRLAFG- 72 + HD+ SP+GAI S E LL + G+ + I+ +M L F R G Sbjct: 159 LAHDLRSPLGAILASTETLLHDDGLSSRSVRAVAFIQRGAMRVQQMIDDLLVFTRTRLGD 218 Query: 73 -YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVAH 127 S + I++ A + + ++L+NL Sbjct: 219 FLPTSFSTQDMGRLCTDAIDEVCASYPDATIDLRLTGELRGKWDGSQIGQLLVNLL---A 275 Query: 128 ASLPRG-GKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHD--- 180 ++ G G+V I + ++ G + FP F + S Sbjct: 276 NAVRYGSGRVAIEAAGRDGQMTIAVSNEGNPIPPSAFPTLFDPLTRATRPDQSGSAAGIG 335 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + ++ + + +H + + Sbjct: 336 LGLYICRCIVEAHRGTIDVQ-SSEHGTTFTVRIP 368 >gi|168702420|ref|ZP_02734697.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1013 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 23/174 (13%) Query: 39 LLDEVGIEDEVMQLIRL-------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----E 87 LL+EVG + + + I S+ L F R ++ L + E Sbjct: 661 LLNEVGPKSPLREHIEEIRHAGKRSADLTRQLLAFSR----QQVLAPQVLDLSTVTRGTE 716 Query: 88 QVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 +++ + D R++VS W + ++L+NL + A ++P GG +T+ + + Sbjct: 717 KLLRQLLGADIRLRVSAGARVWPVRAD--PGQIEQVLMNLAVNARDAMPTGGALTVEIGN 774 Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYVILLAHENKI 195 ++ + ++ + G + + G + + S + ++ A Sbjct: 775 AELDEGYAREHRGARPGPHVRLSVSDTGTGMSQDVLSRIFEPFFTTKAAGHGTG 828 >gi|167566329|ref|ZP_02359245.1| sensor histidine kinase [Burkholderia oklahomensis EO147] gi|167573431|ref|ZP_02366305.1| sensor histidine kinase [Burkholderia oklahomensis C6786] Length = 389 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 15/130 (11%) Query: 38 ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91 E D + ++ LI S A R++ R+ F GS + S + + Sbjct: 190 EAADLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWSFADIHKGLEATL 246 Query: 92 DFIAVDKRVQVSWT------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + + ++++NL M A ++P G +TI + + Sbjct: 247 NVARNELKYKADVVKDYGELPPVECMPSQLNQVVMNLLMNAVQAIPERGTITIRTRREGD 306 Query: 146 ENIFSLKING 155 +++ G Sbjct: 307 GVTIAVEDTG 316 >gi|94967781|ref|YP_589829.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94549831|gb|ABF39755.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 390 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 1/98 (1%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLN+ + A ++ R G + +S+++ + S+ NG P+ I + Sbjct: 283 QVLLNMLLNAIQAVAREGHIVVSLENRGDYAAISITDNGPGI-PPDTLKNIFRPFFTTKG 341 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + ++ R+ LL Sbjct: 342 HGTGLGLSLARRMVEDHAGRIEVTSKVGEGTTFVVLLP 379 >gi|15596440|ref|NP_249934.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9947173|gb|AAG04632.1|AE004553_9 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 858 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74 I HD + + I SLEL+ + LI S+ A L F R Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127 + L ++ + + D I + E + + +LNL + A Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLDPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185 ++ GG++ I ++ + + ++G A R+ G + + + + ++ ++ Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675 >gi|328952067|ref|YP_004369401.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452391|gb|AEB08220.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 486 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 32/167 (19%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS----MSA 60 + L AL + + + H+I +P+G I ++ ELL + + + Q+I + Sbjct: 264 AERLAALGEMVAGVAHEIRNPLGIISSTAELLRKRLEANPSDGRLAQIIEEEVNRLNQTV 323 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERA 116 L F R + + DIE+++E + + R Q+ + E+ + Sbjct: 324 TEFLDFAR-------PREPNLQPTDIERILERGLEFLQPEIDRSQI--SLERHYQLNGQV 374 Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 + LN+F+ A ++P+GG++ ++ + + I Sbjct: 375 LKADSELLYRAFLNIFINAIQAMPQGGRLIVATEPGPQNKGARIIIQ 421 >gi|239908643|ref|YP_002955385.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798510|dbj|BAH77499.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 570 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 20/157 (12%) Query: 18 LCSRICHDIISPIGAIH--NSL--ELL---DEVGIEDEVMQLIRLSSMSAIIRLK-FMRL 69 L + + H+I +P+ I+ L +L+ D+ ++ + LI S + ++R + R Sbjct: 349 LAAGVAHEINNPLAVINEKTGLMRDLIGLRDDFPDKERYLLLI-DSVLKTVMRCRDITRR 407 Query: 70 AFGYTGSVD---SLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLS-----RERAKI 118 G+ +D I + D+ F+ A+ +++ + + + ++ Sbjct: 408 MLGFARRLDVTLEEININDVITETSGFLNQEALHRKIDLHLDLDPEVTGIVSDRGQLQQV 467 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 LN+ A A++P GG + I + ++ NG Sbjct: 468 FLNILNNALAAVPDGGHIEIHTRGDAEGVSVIVRDNG 504 >gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] Length = 389 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 38/237 (16%) Query: 13 DLVALLCSR------ICHDIISPIGAI----HNSLELLDEVGIEDEVMQLIRLSSMSAI- 61 +L L SR I HD+ SPIG++ + L+ LD + + ++R+ + A Sbjct: 143 ELQETLASRDKMYSVIAHDLRSPIGSLKMLFNTLLDSLDAERVGAGNLDMLRMGNDIAED 202 Query: 62 ------IRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEKIDLS 112 LK+ + G +V + L ++ I + +A K + V + Sbjct: 203 TFSLLDNLLKWTKCQTGRMHTVYQDVDLAEVVLFSSKISESVARTKGIVVEYDIPAPIHV 262 Query: 113 R---ERAKILL-NLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R + K ++ NL ++ GGK+ +S ++ + ++ G + PE Sbjct: 263 RCDVDMVKTIVRNLL---SNAIKYSPEGGGKIIVSTAETPTHAVVRVRDFGVGIK-PEDL 318 Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +++D + + + + L H N + E + S + K Sbjct: 319 NKVLDPAMYFTTYGTGKEEGSGLGLQLCLDLVHRNGGEMTVESVYGEGATFSFTIAK 375 >gi|254523568|ref|ZP_05135623.1| two-component system sensor protein [Stenotrophomonas sp. SKA14] gi|219721159|gb|EED39684.1| two-component system sensor protein [Stenotrophomonas sp. SKA14] Length = 380 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYT-GSVD 78 + HD + + + N L+L+ V +LI + +A R L FG V Sbjct: 161 LAHDFNNLLTIVANCLDLISLRVKNGGVAKLIDTAQRAAERGALLTRQLLTFGKGQTLVP 220 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKI---LLNLFMVAHASLP 131 + L + E + ++ T E LS ++A++ +LNL + ++P Sbjct: 221 EAVDLAALMAECEAMLRRSAGDAIALTVEVSRGLPTLSLDKAQLEAAILNLVCNSRDAMP 280 Query: 132 RGGKVTISVQDSKNEN 147 +GG + I+ + + Sbjct: 281 KGGTILITASARQTRD 296 >gi|156743072|ref|YP_001433201.1| histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234400|gb|ABU59183.1| histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 397 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 15/168 (8%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNS-LELLDEVGIE--DEVMQLIRLSSMSAIIRLK 65 L M L A L + HD I + A +LL + + ++ I ++ L+ Sbjct: 161 LEEMRLRATLAAGAAHD-IGNLFASVLGHAQLLQQAAPSHLQDDLKTIEQAARDGHYLLR 219 Query: 66 FMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRE 114 + T SV++ + D Q+ F + V+V+ + + Sbjct: 220 RLLTIRSATHSVEATTSPVLLPTLVHDALQLTRPFWGTRRSVKVNMALAPVPPVRGHPAD 279 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++L+NL + +++P GG +T+ + + + G + Sbjct: 280 LREVLINLILNGVSAMPEGGTLTVRTYSTGERAVVEISDTGAGIAPAQ 327 >gi|256828818|ref|YP_003157546.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577994|gb|ACU89130.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 450 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +ILLNLF+ A ++P+GG +T+S Q K+ + G+ + Sbjct: 340 PLDPDRMLQILLNLFLNAIQAMPQGGTLTVSAQRVKDRLELRVADTGHGIPAQDL 394 >gi|239918316|ref|YP_002957874.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665] gi|281415487|ref|ZP_06247229.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665] gi|239839523|gb|ACS31320.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665] Length = 389 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 28/206 (13%) Query: 20 SRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIR 63 S + H++ +P+ A+ + + DE E QL I S R Sbjct: 152 SDLAHELRTPVSVLTVYHEALQDGVSHWDEPTGELMGEQLARLTRLVEDINDVSRVEEGR 211 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERA-KILLN 121 ++ R G +G + + E + + + +D+ R+R ++L N Sbjct: 212 IELDRSPQGVSGLLHAATEAHK-----EAYATKGVALTMDADPGLAVDVDRQRMGQVLGN 266 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177 L A P GG+VT+ + S + S+ G P F + G+ D Sbjct: 267 LLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDH 326 Query: 178 -SHDIQFYYVILLAHENKIRLLPEII 202 + L + L Sbjct: 327 GGSGVGLAISRALIQTHGGTLSATST 352 >gi|15890211|ref|NP_355883.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15158395|gb|AAK88668.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 710 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G + + I A R + + + GS + Sbjct: 493 LSHEVGNMIGIITGSLGLLERETGFSERQQRNINR-IRKAADRGRQLASSMLSIGSQQPI 551 Query: 81 IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHA 128 D+ +++ IAV R Q++ + DL R + +LNL + + A Sbjct: 552 HPAYVDVAALLKGMVDVLEIAVGTRNQINLRLQ-DDLPRLALDAALFEQSILNLCLNSAA 610 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++P GG + I+ + S N S++ NG+ Sbjct: 611 AMPTGGVIIIAAEKSDNVVEISVEDNGHGM 640 >gi|307545686|ref|YP_003898165.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307217710|emb|CBV42980.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 496 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 77/220 (35%), Gaps = 42/220 (19%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFMRLAFGYT 74 L S I HD+ +PI + E+LD+ + + + + A+ +K + Sbjct: 289 LFSAISHDLKTPITRLRLRAEMLDDPMLRERFCASLDELDQLVRGALDSVKGL------- 341 Query: 75 GSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDL-SRERAKILLNLFMVAHAS 129 + + + + + ++ V+V + + + L NL + Sbjct: 342 -DMHEEVEIIEPRALCDELAGEMALQGGEVRVMGEAAPVAVKPLAFKRCLTNLL---ENA 397 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNL-------------ARFPEKFTQIVDGN-VEST 175 + G + + ++D+ + +++ +G R ++ G+ + Sbjct: 398 VFYGRRAEVRLEDTPDSLQMAIRDHGPGIEPAQRERVFSPFVRLEPSRSRHTGGSGLGLG 457 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I H IQ + RL + + +V+S +L + Sbjct: 458 IARHIIQAH---------GGRLALDNHPEGGLVVSLMLPR 488 >gi|148550730|ref|YP_001260169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] gi|148503149|gb|ABQ71402.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] Length = 500 Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 30/229 (13%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSA----- 60 L AL + S + H++ P+ AI N L+ L E D V+ + ++ A Sbjct: 266 RLTALGEMASALAHELNQPLSAIANYLKGSKMLLEREEDRNDRVIDAVGRAAAEALRAGK 325 Query: 61 -IIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 I RL+ +A G S+ L+ ++ RVQ ++ E + ++ Sbjct: 326 IIRRLRDF-VARGETERAVESLPKLVEEASALALV-GAKEHGIRVQHDFSPEIDLVLADK 383 Query: 116 AKI---LLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 +I +LNL A ++ PR + I+ D+ + ++ G + + Sbjct: 384 VQIQQVVLNLVRNAIDAMAGNGSGPRALTIAIAPADT-DMARVTVADTGPGI-AADVADR 441 Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + + + R+ E + V L K Sbjct: 442 LFQPFITTKRTGMGVGLSISRTIVEAHGGRIWAESHEGGGAVFGFTLPK 490 >gi|257457920|ref|ZP_05623079.1| sensory box histidine kinase [Treponema vincentii ATCC 35580] gi|257444633|gb|EEV19717.1| sensory box histidine kinase [Treponema vincentii ATCC 35580] Length = 404 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 74/222 (33%), Gaps = 21/222 (9%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSMSAI 61 +L +L L + + H+I +P+ AI ++LL + + + ++ Sbjct: 150 NLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACNLEINAKAQKHLDVVEEEIERLN 209 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRE 114 + A + + + ++ + + + Q+ I Sbjct: 210 KIVVDFLFAVRPLQCEFAPVDVNELIKNLFATFQEEFSAAGITFVSQLDSELPVIQADER 269 Query: 115 RAK-ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + L+N+ A A++ P GG++ ++ + + + ++ G P+ +I + Sbjct: 270 FLRQALINILTNAKAAMMPAGGELGVTTRFDEEKVYITVTDTGKGI-PPDILHKIFEPYF 328 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + E+ + + +L Sbjct: 329 TTKPDGSGLGLTMTYKVIKEHGGDIQVHSEVGSGTRFTLMLP 370 >gi|197120792|ref|YP_002132743.1| signal transduction histidine kinase with CheB and CheR activity [Anaeromyxobacter sp. K] gi|196170641|gb|ACG71614.1| signal transduction histidine kinase with CheB and CheR activity [Anaeromyxobacter sp. K] Length = 1233 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 19/174 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR----LSSMSAIIRLKFMRLAFGY 73 + H++ +P+ I NSL LL+ E ++I + L R+A G Sbjct: 882 LSHELRNPLAPIRNSLHLLERSPPGSEGARRAQKVIARQVGHLARLVDDLLDATRVAHGK 941 Query: 74 TGSVDSLIGLGD-IEQVIED----FIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125 + L + ++ ED F + R + + +R ++ + NL + Sbjct: 942 LQLQRERLDLAEVAQRAAEDHRELFASRGVRFDLELPDRPAWVDGDRIRLSQAIGNLLLN 1001 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTID 177 A PR G V ++V ++ +K G P ++ + T+D Sbjct: 1002 AAKFTPRDGAVRLAVTVAEPRAEVRVKDTGVGI-EPAMLPRLFQPFSQADETLD 1054 >gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 641 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + HD+ SP+ AI +EL++ VG ++ + ++ I++S + L R+ G+ Sbjct: 426 VSHDLRSPLTAILGYVELIERVGTVNDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAGF 485 Query: 74 TGSVDS----LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126 + I +E + +Q+ + L ++ + NL A Sbjct: 486 DTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNA 545 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV-DGNVESTIDSHDIQ 182 P+GGK+ +S++ N+ +F + NG P F + N + + Sbjct: 546 IKYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNAAPDVSGTGLG 605 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ R+ + + +L Sbjct: 606 LAIVKSIVEAHEGRIWVDSAVGTGSTFTVVLP 637 >gi|268316749|ref|YP_003290468.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334283|gb|ACY48080.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 646 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 48/226 (21%) Query: 24 HDIISPIGAIHNSL---------------ELLDEVGIEDEVM-----QLIRLSSMSAIIR 63 HD+ +P+ ++ L ELL + M QLI S++ R Sbjct: 428 HDLRNPLSSVQ-GLIQTVREELPPDSPHRELLKLAEAASQRMLGTIEQLITASALE-SGR 485 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKI------DLSRE 114 + F R+ + L ++ F A K+ Q+ + G + Sbjct: 486 VTFRRM----------RVDLVELVAETVHFHQDRATRKQQQLVFLGPSTGSCVVETDPEQ 535 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIV 168 + L NL A P G ++T+ + + S++ G + AR F ++ Sbjct: 536 LRRALTNLLTNALKFTPSGKRITVQLARHTDTVRLSVRDEGPGLTEADRARLFGYFQRLS 595 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 S + + R+ + + +L Sbjct: 596 A-QPTGDEPSSGLGLAITKQIVERLGGRIEVDSTPGQGSTFTIVLP 640 >gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1427 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 75/218 (34%), Gaps = 24/218 (11%) Query: 20 SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAF 71 S + H+ +P+ + + LE ++ + + D+ L+ ++ + + LK F R+ Sbjct: 365 SNVSHEFRTPLTLMLSPLEEVMTQAALPDDQQALLGIAHRNGLRLLKLVNTLLDFARIEA 424 Query: 72 GYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLF 123 G + + + L ++ +F + + + + L + KI+LNL Sbjct: 425 GRVTAQFTPVDLPSFTAELASNFRSAIDKAGLRLIIDAPPLPQPVYVDREMWEKIVLNLL 484 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVESTI 176 A G++ ++V+ + + ++ P + +G +I Sbjct: 485 SNAFK-FTFAGEIAVTVRAGPDGRSAEIVVSDTGTGIPPTEIPHLFERFRRVEGARGRSI 543 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + I V L + L E L Sbjct: 544 EGSGIGLALVQELVKLHSGSLSVESELGRGSAFRVTLP 581 >gi|310828177|ref|YP_003960534.1| putative two-component sensor histidine kinase [Eubacterium limosum KIST612] gi|308739911|gb|ADO37571.1| putative two-component sensor histidine kinase [Eubacterium limosum KIST612] Length = 462 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 22/156 (14%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---- 75 S + HDI +P+ I + ELL E + E + +R +A + ++ RL + Sbjct: 243 SALAHDIKTPLTIIKGNSELLTEDNLNGEQAECVRYIHDNAEVIEEYTRLLMEVSQDRAA 302 Query: 76 ------SVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLN 121 ++ ++ + I++ E + A +R+ ++TG+ L+ + ++N Sbjct: 303 WNLNPEAIPAMAFMEQIKKQAEGYTAGRQIRLCFDTERLPEAFTGDSGLLN----RAVMN 358 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 + P GG +++ + + + ++ G Sbjct: 359 IIANGADYTPEGGTLSLKAEGNGSVISITITDGGPG 394 >gi|258513455|ref|YP_003189677.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] gi|257777160|gb|ACV61054.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfotomaculum acetoxidans DSM 771] Length = 686 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 29/171 (16%) Query: 9 LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRL-K 65 S ++LVA L + I H+I +P+ + L++L + L+ A + + Sbjct: 471 FSRLNLVAELAAGIGHEIRNPLTTVRGFLQMLRSKKNAQYMEYYDLMIEELDRANSIISE 530 Query: 66 FMRLAFGYTGSVDSLIGLG---------------DIEQVIEDFIAVDKRVQVSWTGEKID 110 F+ LA + + L E +I D + ++++ ++ Sbjct: 531 FLSLA------RNKPLDLHKQNLKQIIINISPLIQAEAIISD---KNIKLELE-DIPELL 580 Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 L ++ +++LNL + A ++ GG +TI + ++ + ++K G + Sbjct: 581 LDKKEIHQLILNLVLNAIEAMFPGGTITIKTYTANDKVVLAIKDEGQGIKP 631 >gi|253701112|ref|YP_003022301.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775962|gb|ACT18543.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 423 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 96 VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + ++++W L + ++L+NL A ++P+GG +TI+V Sbjct: 268 AGQGIELAWEPAPDTLPIMVDQAQMEQVLVNLTANARDAMPQGGTLTITVDAVDLAPH 325 >gi|152984057|ref|YP_001347318.1| putative two-component sensor [Pseudomonas aeruginosa PA7] gi|150959215|gb|ABR81240.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 482 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 81/214 (37%), Gaps = 34/214 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ +++ + ++L+ A+ +K Sbjct: 283 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 333 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + D+ +++ D RV+V + + A + + NL Sbjct: 334 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 388 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +L G + + ++D + + +G PE+ + + + Q Y + Sbjct: 389 DNALKYGERARLCLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 444 Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 L +AH + + + + + +S L + Sbjct: 445 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 478 >gi|329888262|ref|ZP_08266860.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] gi|328846818|gb|EGF96380.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] Length = 465 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 18/192 (9%) Query: 24 HDIISPIGAIHNSLE----LLDEVGIED----EVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 H++ +P+ I N LE LD+ + ++ S L R+ G Sbjct: 255 HELRAPLNRIRNRLEDLAANLDDAQAREAAVERALEETDQVSALFEALLTLARIESGDAA 314 Query: 76 SVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 + L + + D R+ V+ + ++ +A Sbjct: 315 LQTERLDLAALAATVADIYSPFVEEAGGRLTVALAPTGAVEADPALIQQALANLIENAVF 374 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYY 185 GG++ +S K + + +G E+ + + + Sbjct: 375 HGGGRIEVSTCSEKGRAVVRVADHGPGVPEAERDKILRRFYRLGQGGSGHTSGAGLGLAM 434 Query: 186 VILLAHENKIRL 197 V +A + L Sbjct: 435 VAAVARAHGGEL 446 >gi|209549636|ref|YP_002281553.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535392|gb|ACI55327.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 691 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 21/190 (11%) Query: 24 HDIISPIGAIHNSLELLDEV-GIEDEVMQLI-------RLSSMSAIIRLKFMRLAFGYTG 75 HD + + + +LELL + + + M+L+ R + L F R Sbjct: 305 HDFNNLLMVVLGNLELLGKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFAR----QQD 360 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------GEKIDLSRERAKI-LLNLFMVAHA 128 + L D+ + D + +S + + ++ LLNL + A Sbjct: 361 LQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPALVDANQLELALLNLAVNARD 420 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG ++IS+++ + G G T+ F+ Sbjct: 421 AMPDGGMLSISLREEQVVGNDGDLGEGAYLVL--AVADSGTGMDAETLKKAVDPFFSTKE 478 Query: 189 LAHENKIRLL 198 L + L Sbjct: 479 LGKGTGLGLS 488 >gi|119896749|ref|YP_931962.1| putative two component sensor kinase [Azoarcus sp. BH72] gi|119669162|emb|CAL93075.1| putative two component sensor kinase [Azoarcus sp. BH72] Length = 462 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 25/209 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLEL------------LDEVGIEDEVMQLIRLSSMS 59 +D + S I HD+ P+ A+ N+++ G+ D+ +L+R + Sbjct: 235 VDAAKHVSSAIAHDMRRPLIALRNAIDEARRSPGADPALRTQLEGLRDQTEELLR----T 290 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERA 116 L R+ G G + + L +I + D +A + ++ + +R Sbjct: 291 FSALLSLARIEAGALGPLLQAVNLTEIARDAIDLYEPLAASQGRALNPRLAPACVRGDRD 350 Query: 117 KILLNLFMVAHASLPRG-GKVTISVQD-SKNENIFSLKINGN---LARFPEKFTQIVDGN 171 + L + +L G G + I + +++ +G A P F + + Sbjct: 351 LLFQVLQNLIENALKHGAGDIDIGIDTLPDGGARLTVRDHGEAVAAADLPHLFERFFRAD 410 Query: 172 VE-STIDSHDIQFYYVILLAHENKIRLLP 199 S + I V +A + + Sbjct: 411 SSRSAAEGAGIGLALVRGIAEAHGGSIRA 439 >gi|226228598|ref|YP_002762704.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091789|dbj|BAH40234.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 689 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 12/173 (6%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLKFMR-LAFGYTGSVD-SLIGLGDIEQVIEDFIAVD 97 LD G + IR S+ A ++ R L++ T + + + LG++ + + Sbjct: 351 LDNNGEAAMYLDDIRRSAERARTLVR--RILSYSRTDNAEREPLDLGELLTETDRLLRAT 408 Query: 98 --KRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149 + V + E + R + +ILLNL A ++P GG + IS + +++ + Sbjct: 409 LPQSVHLHCVSEPGVIVRAESGEIQQILLNLATNAAHAMPTGGTLRISATGAPVRDDAVL 468 Query: 150 SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202 + G + G + TI F+ L + L Sbjct: 469 TSTFRGQRFVACLQVQDTGIGMDDDTITRAFEPFFTTKSLGRGTGLGLAMVHT 521 >gi|197120985|ref|YP_002132936.1| histidine kinase [Anaeromyxobacter sp. K] gi|196170834|gb|ACG71807.1| histidine kinase [Anaeromyxobacter sp. K] Length = 237 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 10/208 (4%) Query: 17 LLCSRICHDIISPIGAIHNSLEL-LDEV--GIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72 L + + H++ +P+ A+ ++L L E ++ + + L+ ++ A G Sbjct: 26 LDGATLAHELKNPLTAVKALVQLGLANPREAASHERLEQVARAVERMERILRDYLASARG 85 Query: 73 YTGSVDSLIGLGDIEQ-VIEDFIAVDK----RVQVSWTGEKIDLSRERAKILLNLFMVAH 127 + + +G + V++ A R+ R + L+NL Sbjct: 86 MAELAPAQVEVGPLVTGVLQGLSARASEARVRLVARGDATVEADPRRLEEALVNLVANGI 145 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 + P GG+V + V S ++ G+ + ++ + + + +V Sbjct: 146 EATPPGGEVAVEVLSSAEGAELVVRDTGSGI-TADALERLGTPFFSTRSGGNGLGVAHVR 204 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L E V+ A L + Sbjct: 205 SVIAMHGGSLRYESEPGKGTVVRATLPR 232 >gi|299069601|emb|CBJ40873.1| putative sensory histidine kinase in two-component regulatory system with OmpR (envZ) [Ralstonia solanacearum CMR15] Length = 459 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 15/146 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---SVD 78 I HD+ +P+ + E+L + I S ++ LA+ +G S D Sbjct: 256 IAHDLKTPLSRLRLRAEMLTDPKASAG----IERDVDSMSAIVEQF-LAYAQSGDGESRD 310 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKV 136 ++ + +++ F K V + + +I++NL + G + Sbjct: 311 VMVDRH-LRGLVQPFAEQGKHVALELRAGDRFRLKPTYLERIVVNLL---DNAFAYGAE- 365 Query: 137 TISVQDSKNENIFSLKINGNLARFPE 162 + V + +E F+L + + A P+ Sbjct: 366 PVRVTTAADERSFTLTVEDHGAGIPQ 391 >gi|206560047|ref|YP_002230811.1| two-component regulatory system, sensor kinase protein [Burkholderia cenocepacia J2315] gi|198036088|emb|CAR51983.1| two-component regulatory system, sensor kinase protein [Burkholderia cenocepacia J2315] Length = 459 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 17/199 (8%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL----SSMSAIIRLKFMRLAFGYTGS 76 H++ P+ A+ E+ D +D ++ + S+ + L+ RL G Sbjct: 241 HELRIPLAALSAQAEVALRADSPADKDAALRRLATGVERSARLSAQLLELARLDAGSRAE 300 Query: 77 VDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR- 132 + L + +I D A +R V E + + + +I + + + +L Sbjct: 301 QHGPVDLARLVALIASDFDAAAHARRQTVRVAVEPVCVWGDLDEIAIAVRNLIDNALRYG 360 Query: 133 --GGKVTISVQDSKNENIFSLKINGNLARFP----EKFTQIVDGNVESTIDSHDIQFYYV 186 GG+V I+ + L+I + P E+ + + I V Sbjct: 361 REGGRVEITCDGAVEAGRVRLRIADDGPGVPVDQRERIFERFYRVPGTAQPGSGIGLSLV 420 Query: 187 ILLAHENKIRLLPEIIDDH 205 +A + + D Sbjct: 421 ARIAESHGGAVDVTAGIDG 439 >gi|91775537|ref|YP_545293.1| histidine kinase [Methylobacillus flagellatus KT] gi|91709524|gb|ABE49452.1| histidine kinase [Methylobacillus flagellatus KT] Length = 730 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 24/163 (14%) Query: 21 RICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 R H+ +P+ I N L +L+ GI + + ++ + + Y+G Sbjct: 511 RFVHETSTPLSTIKNYLAILEQKMLLNGIPNRDIAIVNEEIDRVGSLIGNL-----YSGE 565 Query: 77 VDSLIGLGDIEQVIEDFIAVDK---------RVQVSWTGEKI---DLSRERAKILLNLFM 124 + + DI Q+I+D +A+ + +V ++ + + ++L+NL Sbjct: 566 QEHIAASTDINQLIQDLLALHRQTYLQPAGIKVTLNLYPNLPKITTIPYQVRQVLVNLIR 625 Query: 125 VAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKF 164 A ++P GG+++IS S + ++I+ PE Sbjct: 626 NAAEAMPEGGELSISTFLENQSGSGQGILIQISDTGPGIPESV 668 >gi|159038627|ref|YP_001537880.1| histidine kinase [Salinispora arenicola CNS-205] gi|157917462|gb|ABV98889.1| histidine kinase [Salinispora arenicola CNS-205] Length = 369 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 26/213 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS---L 80 H++ +P+ I LE ++ D+ ++ + RL RLA + Sbjct: 154 HELRTPLATIEAYLEAAEDGVAVDDED--LQSVLRAQTARLH--RLADDIAAVSRAETHQ 209 Query: 81 IGLGDIEQVIEDFIAVD--------------KRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + L + D + R + + + + ++L NL A Sbjct: 210 LDLHPVRTAPADLVRDAVAAVRPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLDNA 269 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID--SHDI 181 P GG VT+ V ++ G P F + + D I Sbjct: 270 LRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHVFERFYRVDTARDRDNGGSGI 329 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + R+ + + ++ +L Sbjct: 330 GLAIVRAVVSAHGGRVRADNVPGGGTMVKVVLP 362 >gi|110598804|ref|ZP_01387063.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339594|gb|EAT58110.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 679 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 25/223 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIH-NSLELLDEVGIEDEVMQ---LIR---LSSMSAIIR 63 L A+ L S + H+I +P+ AI L E +E + L+R Sbjct: 461 KLTAMGELASGVAHEIRNPLNAIGVLGQRLDMEFSPAEEREEYHHLVRAIVSEVHRVNAI 520 Query: 64 ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS-WTGEKIDLSR 113 LKF R + L D + + + R ++ ++G +I + R Sbjct: 521 IQRFLKFAR----PPKLMLMPTDLDDFIRQYRPVLEGEAETVGVRFTLTAFSGCQISIDR 576 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + +LLNL A + GG+VT+ + G E +QI + Sbjct: 577 AQMQQVLLNLVRNAVEATEPGGEVTVMTGQRTGSAFIEVADTGRGI-PEELRSQIFNLYF 635 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 S D + + + + E +++ + +L + Sbjct: 636 TSKEDGTGMGLSIANQIVQSHGGVIEVESLENRGSIFRIVLPR 678 >gi|39933571|ref|NP_945847.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39647417|emb|CAE25938.1| sensor histidine kinase with PAS/PAC and Response regulator receiver domains [Rhodopseudomonas palustris CGA009] Length = 1093 Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 14/178 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80 I HD + + I +++++ + + + I A R + RL + Sbjct: 698 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAELTRLLLAFARKQPLR 757 Query: 81 IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKID----LSRERAK-ILLNLFMVAHASL 130 ++ ++ + + ++V + R + + L+NL + A ++ Sbjct: 758 PDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAM 817 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFYYV 186 P+GGK+TI + + + G+LA I D + TI S ++ Sbjct: 818 PKGGKLTIETSNVVVDPDLGKR-FGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFT 874 >gi|302341474|ref|YP_003806003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638087|gb|ADK83409.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 593 Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 20/219 (9%) Query: 16 ALLCSRICHDIISPIGAIH--NSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFM- 67 A + + + HD+ +P+ +I +L L DE + + RL +F+ Sbjct: 365 ARIIAMLAHDMKTPLISIRGFANLLLRDEDQAHAKNRRKYAQFIEQEAARLDGFVHRFLE 424 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRERAKILL-- 120 RL G + L + + + + R ++ A++L Sbjct: 425 MSRLQDGALKLKPERLDLAERLAGVVEAVRPQFRAANVELLLEAPAPAPVEADAELLGRI 484 Query: 121 --NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175 NL A P GG+V +SV E ++ G+ E F G+ T Sbjct: 485 FDNLLDNALQHSPTGGQVHVSVIAEGGEAQVRVRDQGSGIPADELSLIFEPFFRGSNSKT 544 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + RL+ + H + + L Sbjct: 545 TQGYGLGLAAAKAIACLHGGRLVVDSQPGHGALFTLRLP 583 >gi|163759609|ref|ZP_02166694.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283206|gb|EDQ33492.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 875 Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 22/169 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIR--LS 56 MA+ N L I HD + + AI S + L+ + LI + Sbjct: 473 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLMSLRPADSSFADLIEIKRN 527 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106 + A + ++ + LAF ++ + +GD+ +++ + ++ + W Sbjct: 528 ANRAAVLVRQL-LAFSRKQTMRPTVLSMTDVIGDLRMLVDRLTGTNVKLDLEFGRDLWLV 586 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + E+ L+NL + A ++P GG +T+ ++ + + + SL G Sbjct: 587 KTDLGQFEQV--LINLAVNARDAMPEGGTITVRTRNVEADEVESLNHRG 633 >gi|197116896|ref|YP_002137323.1| GAF domain-containing sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197086256|gb|ACH37527.1| sensor histidine kinase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 689 Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 64/178 (35%), Gaps = 14/178 (7%) Query: 22 ICHD----IISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-S 76 I HD + IG + +L + E + + + ++ A + + LAF + Sbjct: 464 IAHDFNNLLTGMIGYVSLALMTIKEEDPATKYLDQVVSAADRAADLTQRL-LAFSRKQIN 522 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMVAHAS 129 + L I + ++ ++ E + ++++NL A + Sbjct: 523 HPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPSEGMLPVVADSSQIDQMVMNLVTNARDA 582 Query: 130 LPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +P GG +TI+ + + + G++ + ++ +H ++ ++ Sbjct: 583 MPTGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDTGTGMDEATRAHVLEPFFT 640 >gi|257093279|ref|YP_003166920.1| integral membrane sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045803|gb|ACV34991.1| integral membrane sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 509 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 76/225 (33%), Gaps = 18/225 (8%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ---LIRLS 56 A++ +S+ L + S + HD+ +P+ ++ + L + +++ ++ +IR Sbjct: 267 AQDSELQVSAERLRTSILSSLSHDLRTPLTSLVGLADTLVHRQPALDEGAIETAAIIRDQ 326 Query: 57 SMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKI 109 + + L+ RL G +I +A +++ + + Sbjct: 327 AHAMHHLMSNLLEMARLQAGSITLNKEWQPFEEIVGSSTRLLAGLLASRKLDIQVPRDLP 386 Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163 + + ++L NL A P G ++ + + ++ +G R + Sbjct: 387 LVDFDAVLLERVLCNLLENAAKYSPPGARIEVLARTRGEALEIAVGNDGRGFPVDRIDQV 446 Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 F G E + + + + ++ E V Sbjct: 447 FDLFARGEREPAVAGTGLGLAICKAIVEAHGGTIVAENRPGGACV 491 >gi|253701298|ref|YP_003022487.1| histidine kinase [Geobacter sp. M21] gi|251776148|gb|ACT18729.1| histidine kinase [Geobacter sp. M21] Length = 656 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%) Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162 T +I + ++ + + +NL + A A++ RGGK+ +S Q+ ++ NG E Sbjct: 539 TLPEIMVDGDQLRQVAINLILNAGAAMQRGGKLVVSTQNGEDNCVSLKFSDNGAGI-AAE 597 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 +I + + + + + ++ ++ E + L Sbjct: 598 HMERIFEPFFTTKVKGTGLGLAITRQIVEQHHGKIGIESEIGAGTTVEVRLP 649 >gi|209884541|ref|YP_002288398.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans OM5] gi|209872737|gb|ACI92533.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans OM5] Length = 846 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 18/170 (10%) Query: 22 ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGY-TGSV 77 I HD + + AI + + LL+ D Q I +A +R LAF Sbjct: 477 IAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQLLAFSRRQTLR 536 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKILLNLFMVAHA 128 ++ LGD + + ++V++ W E+ ++NL + A Sbjct: 537 PQVLDLGDALSDLTMLLKRLIGEKVKLDVIHGRDLWPVRVDVSQFEQV--IVNLAVNARD 594 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 ++P GGK+ + + + I L G + +I G+ + + Sbjct: 595 AMPEGGKLVVKTSNVAAQEIGRL---GIKEMPAADYVRIDVGDSGTGMPP 641 >gi|146341889|ref|YP_001206937.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194695|emb|CAL78720.1| Putative two-component sensor histidine kinase with multiple PAS domains and a CheY-like response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 843 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 15/157 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 M++V L I HD + + AI + + LL+ D Q I +A +R Sbjct: 455 MEMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 514 Query: 69 LAFGY-TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118 LAF ++ LGD + + ++V++ W + E+ Sbjct: 515 LAFSRRQTLRPQVLDLGDALSDLTMLLRRLIGEKVKLDLSHGRDLWPVKVDVSQFEQV-- 572 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++NL + A ++P GGK+++ + E G Sbjct: 573 IVNLAVNARDAMPDGGKLSVRTANVTAEETAQAAYKG 609 >gi|53716381|ref|YP_106230.1| sensory box sensor histidine kinase [Burkholderia mallei ATCC 23344] gi|52422351|gb|AAU45921.1| sensory box sensor histidine kinase [Burkholderia mallei ATCC 23344] Length = 358 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 162 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 218 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 219 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 278 Query: 149 FSLKING 155 +++ G Sbjct: 279 IAIEDTG 285 >gi|297569444|ref|YP_003690788.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] gi|296925359|gb|ADH86169.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfurivibrio alkaliphilus AHT2] Length = 484 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHN-----SLELLDEVGIEDEVMQLIRLSSMSAII 62 S L L + + + H+I +P+G I + + E + + ++I + Sbjct: 261 DSEKLATLGRMVASVSHEIKNPLGIIRSTAAILGKRVKQEAPGNEHLAEIIVSETGRLDG 320 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------DKRVQVSWTGEKIDLS 112 ++ L F I QVI + +++ + + Sbjct: 321 IVREF-LDF--ARPQTLHSSPEFINQVIRQAFTFLAPELQRRGIETVLELDEGLPPLAID 377 Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 RE+ + LLN+ + A ++P GG +T+ + + + + + G + E+ Sbjct: 378 REQIYRALLNIMLNAIQAMPGGGTLTLRSRRRRGDQLVEIADTGPGIKEEER 429 >gi|118579601|ref|YP_900851.1| histidine kinase [Pelobacter propionicus DSM 2379] gi|118502311|gb|ABK98793.1| histidine kinase [Pelobacter propionicus DSM 2379] Length = 527 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 19/142 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLK----FMRLAFGYTG 75 HD + + AI E+ DE + +I S M A ++ F R + Sbjct: 156 HDFNNILTAILGYSEIARLRAAHDEKLAECLDIIHDSGMKAASLVRQLLIFSR----KST 211 Query: 76 SVDSLIGLGDI----EQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128 ++ + + +++ I D + + ++ + +I++NL + A Sbjct: 212 LEPQVVDIRSLIDNMAKILARVIGEDVILGLQTESPVGNILVDPAQVEQIIMNLVVNARD 271 Query: 129 SLPRGGKVTISVQDSKNENIFS 150 ++P+GG VTI +D + ++ ++ Sbjct: 272 AMPQGGTVTIRAEDVELDSSYT 293 >gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 919 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 S I H++ +P+ A+ +LELL E LI +S SA + Sbjct: 411 SMISHELRTPMNAVIGALELLSLADKSGEERDLIETASTSANNLI 455 >gi|325116385|emb|CBZ51938.1| putative 3', 5'-cyclic nucleotide phosphodiesterase [Neospora caninum Liverpool] Length = 1359 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 25/99 (25%) Query: 4 NICFNLSSMDLVALLCSRICHDI-------------ISPIGAIHNSLELLDEVGIEDEVM 50 + +L++ DLVAL+ + +CHDI SP+G I+N + +L+ Sbjct: 881 ELASSLTAPDLVALIVAALCHDIGHQGKNNAFYIASRSPLGIIYNDISVLENFHASLTFK 940 Query: 51 QLIRLSSMSAIIRL----KF----MRLAFGYTGSVDSLI 81 L + R+ + RL FGY S++ + Sbjct: 941 IL----ARQVAARVLPPKQMRPVGYRLIFGYPRSLEPEV 975 >gi|303245618|ref|ZP_07331901.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492881|gb|EFL52746.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 487 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 23/223 (10%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLS-SMSAIIR 63 S L A+ L I H+I +P+ AI N+L ++G I LS S Sbjct: 260 KSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGEASREKASIILSESRRLDEI 319 Query: 64 LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDL--- 111 LK F R T S + L D+ + + V + + Sbjct: 320 LKDITNFAR----PTVSRPGEVDLADVARRTTALMRHALESQGITVTLDLSPNAPVARGD 375 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171 + L+N A ++P GG + +S + S+ +G P+ Q+ + Sbjct: 376 PETLTQCLVNCLKNAMEAMPDGGHIMVSTGLRDGRALLSVTDDGPGI-PPDILPQVFNPF 434 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E + + + L Sbjct: 435 FTTRDKRAGLGLAMTKKILEDLGGSVELESVPGNGTTVVLSLP 477 >gi|258593742|emb|CBE70083.1| putative Multi-sensor signal transduction histidine kinase precursor [NC10 bacterium 'Dutch sediment'] Length = 557 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 22/174 (12%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRL 69 L + + H++ +P+ AI +EL+ E G QL+ + A RL +F+ Sbjct: 339 AGQLAAGLAHEVRNPLAAISGCIELIKEAGTARP--QLLDIVLREAE-RLKLVTGQFLDF 395 Query: 70 AFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLN 121 A S + + + ++E V S E ++ + + L N Sbjct: 396 AKPTLASQKQCNLVALVAEAVSLLEKSCDSAHPVTFSIQREAEEVMAAGDPDQLKQALWN 455 Query: 122 LFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 L + A ++ GG+++ ++ N L G PE+ +I D Sbjct: 456 LGLNAIQAMQMGGRLSFVIRRHGSENGDNWVGIELTDTGQGI-PPEEVERIFDP 508 >gi|255263567|ref|ZP_05342909.1| PAS/PAC sensor hybrid histidine kinase [Thalassiobium sp. R2A62] gi|255105902|gb|EET48576.1| PAS/PAC sensor hybrid histidine kinase [Thalassiobium sp. R2A62] Length = 677 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 30/139 (21%) Query: 24 HDIISPIGAIHNS-LELLDEVGIEDEVMQLIRLS----SMSAI---IRLKFMRLAFGYTG 75 HD + + A+ LEL E +D+ +LI + A L F R A Sbjct: 296 HDF-NNLLAVTLGNLELSLETSQDDDKRELIENAIEATMRGASLTKNLLSFARRA----H 350 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKILLNLF 123 + I L Q+I + + RV W E S E A L+NL Sbjct: 351 LEPTHINLN---QIIRNTMTWGARVLPETVIIENSLAAELWDVELDPTSMENA--LINLL 405 Query: 124 MVAHASLPRGGKVTISVQD 142 + A ++P GGKVTI + Sbjct: 406 LNARDAMPEGGKVTIKTAN 424 >gi|298528785|ref|ZP_07016189.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512437|gb|EFI36339.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1065 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 11/127 (8%) Query: 24 HDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + + ++E LL + + +Q I S + ++ + LA Sbjct: 707 HDFNNLLQTMSGNIEFLLQDKSADHPDISRLQAISRSIARSASLVQQLLLAGRKAKFQKV 766 Query: 80 LIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPR 132 + L ++ Q++E + +++ ++ + +I LLNL A ++P+ Sbjct: 767 QVDLNEELQEVFQMLERVVPKMIALELHLDPYIEPIAADPVQIEQVLLNLANNAVDAMPQ 826 Query: 133 GGKVTIS 139 GG++ Sbjct: 827 GGRLAFE 833 >gi|94265363|ref|ZP_01289117.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454116|gb|EAT04445.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 700 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 19/120 (15%) Query: 37 LELLDEVGIEDEVMQL--IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--DIEQVIED 92 L LLD + L IR ++ + + + LAF S + DI ++ Sbjct: 351 LMLLDMAPDDPGRENLQEIRKAAKRSADLTRQL-LAF----SRQQPVAPRVVDINEITGG 405 Query: 93 FIAVDKR-----VQVSWTGEKIDLS----RERA-KILLNLFMVAHASLPRGGKVTISVQD 142 + + KR +++ W + ++L NL + A ++ G++TI+ + Sbjct: 406 MLKMLKRLIGEDIELRWQPGPDLWPVRIDPSQVDQLLANLVVNARDAISETGQITITTAN 465 >gi|149182171|ref|ZP_01860653.1| Sporulation kinase [Bacillus sp. SG-1] gi|148850122|gb|EDL64290.1| Sporulation kinase [Bacillus sp. SG-1] Length = 412 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 ++L+NL A ++P GG+VT+ + ++ + S++ G E Q+ + Sbjct: 309 QVLINLIKNAMEAMPAGGEVTVKAEMGEEDTVLLSIRDEGEGIS-KENLEQLGTPFHTTK 367 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + E+ + + ++ +S L Sbjct: 368 SDGTGLGLMVSFKIIEEHSGTIRYDSVEGQGTTVSITLP 406 >gi|196231769|ref|ZP_03130626.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] gi|196224241|gb|EDY18754.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] Length = 885 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 28/159 (17%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRL 69 L S + HD+ + + I + LL E + DE + I + ++ R L F R Sbjct: 517 LASGVAHDLNNILSPIILATPLLVEE-MSDEARRSIVQTVQTSARRGVEIVRQLLTFAR- 574 Query: 70 AFGYTGSVDSLIGL------GDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKI 118 G + + +I + E+ + V WT ++ Sbjct: 575 -----GVRVERMPVNCENLIAEIVSIAEETFPKSIAITVKAKPGLWTALGDATQLQQV-- 627 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 LLNL + A ++P GG + I ++ ++ F+ G Sbjct: 628 LLNLAINARDAMPSGGSLNILARNFLVDDSFASMTPGAK 666 >gi|302038351|ref|YP_003798673.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300606415|emb|CBK42748.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 809 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 29/199 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 I HD + + I++ ELL + M IR + A + + LAF + Sbjct: 442 IAHDFNNLLTIINSWAELLTGEPGQTTRTQRGMAQIREAGNKATALTRQL-LAF----TR 496 Query: 78 DSLIGLG---------DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMV 125 ++ DI ++++ I D ++ ++ + + ++++NL + Sbjct: 497 HQIVERQPLNLNDRVTDIVELMKRVIGEDIQLALTLDPALGRVKADPGQIEQVVMNLVVN 556 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI---- 181 A ++P GG++ + + + L P + + + +D+ + Sbjct: 557 ARDAMPHGGRLDVETKSVSIAHSDPLW---PNPLTPGPYVTLAVRDTGCGMDADTVAHVF 613 Query: 182 -QFYYVILLAHENKIRLLP 199 F+ L + L Sbjct: 614 EPFFTTKELGKGTGLGLST 632 >gi|290512651|ref|ZP_06552017.1| two-component system, OmpR family, sensor histidine kinase CreC [Klebsiella sp. 1_1_55] gi|289774992|gb|EFD82994.1| two-component system, OmpR family, sensor histidine kinase CreC [Klebsiella sp. 1_1_55] Length = 521 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 29/209 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70 H++ SP+ AI + E+L E MQL+ + RL+ RL Sbjct: 312 HELKSPLAAIRGAAEILREGPPPAVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 369 Query: 71 FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + + + Q + D K + + W + ++ + A+ L NL Sbjct: 370 I-----KPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 424 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181 A P GG++ ++ + E S+ NG F + E S + Sbjct: 425 NAIDFTPPGGEIALAAEKRNEEVQLSVIDNGRGIPDYALERIFERFYSLPREDGHKSSGL 484 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +V +A + + + VV + Sbjct: 485 GLAFVREVARLHHGDINLHNRPEGGVVAT 513 >gi|87307720|ref|ZP_01089863.1| sensor protein HYDH [Blastopirellula marina DSM 3645] gi|87289334|gb|EAQ81225.1| sensor protein HYDH [Blastopirellula marina DSM 3645] Length = 278 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 VQ+ + + + ++LLNL + A ++P+GG++ + + E + SL + + Sbjct: 132 VQLDDVPPALAIGNQIQQVLLNLLINARQAMPKGGRLVVRLSHDAAEGVVSLMVRDSGTG 191 Query: 160 FPE 162 P Sbjct: 192 IPA 194 >gi|323343418|ref|ZP_08083645.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269] gi|323095237|gb|EFZ37811.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269] Length = 1348 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 18/116 (15%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQ------DSKNENI----FSLKINGNL-----ARFP 161 KIL NL + A P GG V +SV+ S + + L++ + + P Sbjct: 924 KILNNLLLNAVKYTPMGGHVNVSVELERRLIGSGDASTTRHFLVLEVEDDGNGVEESLLP 983 Query: 162 ---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++F ++V G+ S I + + YV L +K + + +V + + Sbjct: 984 GIFDRFKRLVKGDETSKIMGNGVGLNYVKHLVDNHKGTITARNRAEKGMVFTVTIP 1039 >gi|158520884|ref|YP_001528754.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158509710|gb|ABW66677.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 905 Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 47/229 (20%) Query: 16 ALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAI---IRLK 65 + + S I HD + + +I +LL + + + LI ++ A RL+ Sbjct: 542 SQMASGIAHDFNNALSSIQGFSDLLLQSPEKFSDTPLVKRYVGLINTAARDAAQVVRRLR 601 Query: 66 -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTG--------EKIDL 111 F R S + I D+ ++I++ +A+ + + Q E++ Sbjct: 602 KFYR------PSDEETIEPVDVNRLIKEAVALTEPVWKHKTQARGAPIIVETRFQEQLSA 655 Query: 112 SRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFP 161 S R ++ L NL A ++P GG ++ + + + Sbjct: 656 SGNRTELNEVLTNLIFNAVDAMPEGGSLSFGTRREAGWIVLEVSDTGVGMDATVRRQCMN 715 Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENK-IRLLPEIIDDHNVVL 209 FT G S + +Q ++A I ++ E + VL Sbjct: 716 PFFT--TKGEAGSGLGLATVQ----GIVARHQGQIEIVSEPGNGTTFVL 758 >gi|331010296|gb|EGH90352.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 394 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKDLQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSR---ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +R + L R + +I L + ++ Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIRSDIKMLERIRCDHERIAQLLSNLVSNAIS 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI----QFYY 185 G + + V ++F L + PE + I D+ Y Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDAPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390 >gi|315644820|ref|ZP_07897949.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315279762|gb|EFU43063.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 535 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 8/158 (5%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67 N + + I H++ +P+ + + L LI A + + Sbjct: 322 NTEKLVFAGQVAVSIAHEVRNPLTTVK-GMLQLANKDARLRHYDLIMSELERANLMVGEF 380 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERAK-ILL 120 + +V G+I + + A+ Q I R + K + L Sbjct: 381 MILGKPQAAVLKQEDCGEILEEVLHLFAIQAELSGIEMTQCFVQNAVILCDRNQIKQVFL 440 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 N+ A +LP GG + I + + NG+ Sbjct: 441 NILKNAMEALPYGGNIHIRLDVQEGYQRVIFTDNGSGM 478 >gi|310826824|ref|YP_003959181.1| sensor histidine kinase [Eubacterium limosum KIST612] gi|308738558|gb|ADO36218.1| sensor histidine kinase [Eubacterium limosum KIST612] Length = 415 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 24/217 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAF 71 S I H + +P+ A+ E+L E G + EV+ ++ R LK RL Sbjct: 198 SDISHQLKTPLAALKMYNEILQEDGADPEVLARFTDKVNDSLNRMETLIQNLLKITRLDA 257 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL----------N 121 G L + + + + R + A++L N Sbjct: 258 GAITLRPVLRPVQAMMEDLSHSFETRARRE---QKALRFSGSPAARLLYDPDWLTEAVSN 314 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS 178 L A GG + + +S +++ NG+ F + Sbjct: 315 LIKNALDHTSTGGWIAVGWDESAAVTRITVQDNGSGIHPEDIHHIFKRFYRSRFSQDTQG 374 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + +K L E + + K Sbjct: 375 AGLGLPLALAITEAHKGTLSVESSPGQGALFTMTFLK 411 >gi|189424887|ref|YP_001952064.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421146|gb|ACD95544.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 503 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Query: 85 DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ 141 D + + + + + +Q+ + ++ + ++L NL A ++P GG +TI+ Sbjct: 327 DSQLLAQKLLQKNTTLQLDLAETALIITADEVLLQQVLFNLITNARDAMPTGGTITIATA 386 Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 + + + G R P + ++ + I Sbjct: 387 ERLLDEQSTG---GAKDRVPGTYAVLMVQDTGQGIP 419 >gi|220926142|ref|YP_002501444.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950749|gb|ACL61141.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 699 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 20/142 (14%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74 HD + + A+ SLELL +D ++L+ + A L F R Sbjct: 347 HDFNNLLMAVLGSLELLGKRLDPKDDLALRLVDNAIQGARRGAALTQRLLAFAR----RQ 402 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKI-LLNLFMVAH 127 + + + + + + V I + + ++ LLNL + A Sbjct: 403 ELRPQTVAVAGLVEGMRGLLERALGPGVDIVTLLPADLPPIRIDANQFELALLNLAVNAR 462 Query: 128 ASLPRGGKVTISVQDSKNENIF 149 ++P GG +T+ Sbjct: 463 DAMPLGGTITLDGSGVAEAPGL 484 >gi|167718216|ref|ZP_02401452.1| sensor histidine kinase [Burkholderia pseudomallei DM98] Length = 264 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91 +D + +++ LI S A+ R++ F R +G + L + Sbjct: 48 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 102 Query: 92 DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + E L + +++ +NL + A S+ G +TI + Sbjct: 103 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 162 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203 S+ G + +I D + I + + R+ E Sbjct: 163 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 221 Query: 204 DHNVVLSALLE 214 L+ L Sbjct: 222 GRGSTLTVTLP 232 >gi|220915684|ref|YP_002490988.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953538|gb|ACL63922.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 237 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 10/208 (4%) Query: 17 LLCSRICHDIISPIGAIHNSLEL-LDEV--GIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72 L + + H++ +P+ A+ ++L L E ++ + + L+ ++ A G Sbjct: 26 LDGATLAHELKNPLTAVKALVQLGLANPREAASHERLEQVARAVERMERILRDYLASARG 85 Query: 73 YTGSVDSLIGLGDIEQ-VIEDFIAVDK----RVQVSWTGEKIDLSRERAKILLNLFMVAH 127 + + +G + V++ A R+ R + L+NL Sbjct: 86 MAELAPAQVEVGPLVTGVLQGLSARASEARVRLVARGDATVEADPRRLEEALVNLVANGI 145 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187 + P GG+V + V S ++ G+ + ++ + + + +V Sbjct: 146 EATPPGGEVAVEVLSSAEGAELVVRDTGSGI-TADALERLGTPFFSTRSGGNGLGVAHVR 204 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L E V+ A L + Sbjct: 205 SVIAMHGGSLRYESEPGKGTVVRATLPR 232 >gi|149918762|ref|ZP_01907249.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1] gi|149820363|gb|EDM79779.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1] Length = 573 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 20/213 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + S + HD + + + ++E+L+E DE QL+ + R G+ Sbjct: 216 VASGVAHDFNNSLLVLQGTIEMLEEPMPADERGQLVSEGVAAISAAAATTRQLLGFVRRE 275 Query: 78 DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK-IDLSRERA---KILLNLFMVAHA 128 + + VIE F+ R V ++ + DL + +I+LNL + A Sbjct: 276 RAELSACSPGPVIERFVRTMARVLPESVSLAAAVQPCPDLPIPASTLDQIILNLVLNARD 335 Query: 129 SLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQ---IVDGNVESTIDSHDIQ 182 ++ G + + + + I G E+ + G + + I Sbjct: 336 AIDGQGTILVGCARAANGDGQLIVRDTGEGMDPAVAERVFEPFFSTKGEGGTGLGLATIH 395 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 L ++ ++ + + + Sbjct: 396 -----ELVRQSGGQIHLDTAPGEGSTFTFAWPE 423 >gi|320107742|ref|YP_004183332.1| integral membrane sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319926263|gb|ADV83338.1| integral membrane sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 629 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 84/209 (40%), Gaps = 26/209 (12%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR--LSSMSAII 62 S L A+ L + + H++ +PI A+ LELL + + ++ + S M + Sbjct: 392 SRRLAAIGRLTAGVGHEVKNPINAMVVHLELLRGKLAQPSNGEAALRHVEILSSEMQRLD 451 Query: 63 RL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLS 112 R+ F R LGD+ + + D + D R+Q + T ++ + Sbjct: 452 RVVQALADFSR----PIDLHLHDHDLGDLMRSVLDLASAEVEQNDVRIQFTATAPRLPVR 507 Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + +LN+F+ A ++P GG++ +S+ + + S++ G+ E +I D Sbjct: 508 VDADLIRQAILNIFLNAVQAMPDGGELRLSLYVDQQSAVLSIQDEGDGIPV-EARPRIFD 566 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLL 198 + + I + + L Sbjct: 567 LYFTTKVRGSGIGLAMTYRIVQLHGGALE 595 >gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 399 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 35/226 (15%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS-------AII 62 D AL+ H++ +P+ ++H SLELL ++ + +L+ ++ + A Sbjct: 174 DFTALVS----HELRTPLTSVHGSLELLASGRFGEMQAQASRLVEIAVKNTDRLVRLAND 229 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRER-- 115 L R+ G + + L D+ + IAV+ + + + + + + Sbjct: 230 VLDLSRVQSGQLRLRPAPVELADVVE--NAVIAVEGTAERCHVPLVTRKDPVTVRGDADR 287 Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIV 168 +++ NL A P G V + + ++ +G R E F Q+ Sbjct: 288 LVQVVTNLLANAVKVSPPGQPVEVGCSVEGSVARVYVRDHGMGITDDEVKRIFEPFVQL- 346 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + + + E + +L Sbjct: 347 -GAKSG---GAGLGLAITRGIVESHGGTIAVESEAGIGSTFTVILP 388 >gi|116695400|ref|YP_840976.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113529899|emb|CAJ96246.1| signal transduction histidine kinase [Ralstonia eutropha H16] Length = 680 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 21/166 (12%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS----AIIRLK 65 L + + H+I +PI I +L++ E E ++LI L+ Sbjct: 450 AGHLTAGVAHEINNPIAVIQGNLDVAREILGPAAEPVRHELRLIDEQVRRIHLLTNRLLQ 509 Query: 66 FMR-LAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKID-LSRERAK- 117 F+R A+ G+++ + G++ D + RV++ + +SR + Sbjct: 510 FVRPEAY--AGNME-RLDAGEVAAGCVDLVQHMLKGASIRVELDCLATRQVRISRSELQQ 566 Query: 118 ILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPE 162 +++NL A ++P GG +T+ +D ++ G+ R + Sbjct: 567 VVVNLLTNAIHAMPEGGTLTLGTRDWDGQGVTLHVRDTGHGIREED 612 >gi|322417612|ref|YP_004196835.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320123999|gb|ADW11559.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 486 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 25/218 (11%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIRL 64 L L S + H++ +P+G + N++ L V + + I S L Sbjct: 258 LGQLSGS-LSHELRNPLGVMSNAVYFLKAVHADADETTKEYLGIIGSEIANSQRIITDML 316 Query: 65 KFMRLAFGYTGSVDSLIGLGD-IEQVIEDF-IAVDKRVQVSWTGEKIDL---SRERAKIL 119 F R + + G+ + Q ++ I + V V+ E L + ++L Sbjct: 317 DFAR----TKPPKRTPVSPGELVRQSLKGCSIPENVTVAVAVQEEPPILNVDPLQMGQVL 372 Query: 120 LNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 N + A ++ GG + ++ + +E S+ G PE ++ T Sbjct: 373 TNFIINAVQAMSNGGSLQLAARLIPGDEMEISVTDTGEGIS-PENRVKLF--QPLFTTKP 429 Query: 179 HDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 I V+ L N R+ E + L Sbjct: 430 KGIGLGLVVCKNLVEANGGRIEVESEPGKGTTFTVKLP 467 >gi|269836214|ref|YP_003318442.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269785477|gb|ACZ37620.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 477 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 22/213 (10%) Query: 24 HDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 HD+ +P+ A+ LE L D + + + + + + F RL + Sbjct: 238 HDLRTPLFALRGYLEGLEKGLDDTPEKRARYIAVAQEKAATLERLIGDLFDFTRLEYLEQ 297 Query: 75 GSVDSLIGLGDIE-QVIEDFI----AVDKRVQVSWTGEKIDLSRER---AKILLNLFMVA 126 + LG + +++E F ++ ++ E + + + L NL A Sbjct: 298 TPNPEPLDLGALLDRLVEGFRPQADTKGVQLTLTIPPEPCWVQGDTHLLTRALSNLLDNA 357 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVE--STIDSHDI 181 P GG+V ++ + + IF++ G P F + G + Sbjct: 358 LRYTPSGGQVRVACRTEPSGVIFTIADTGPGIPAHDLPNLFAPLYRGETSRNRRTGGAGL 417 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + L V + L Sbjct: 418 GLTIARRILLAHGGDLSAGNGQAGGAVFTGRLP 450 >gi|76819114|ref|YP_335868.1| sensory box sensor histidine kinase [Burkholderia pseudomallei 1710b] gi|76583587|gb|ABA53061.1| sensory box sensor histidine kinase [Burkholderia pseudomallei 1710b] Length = 358 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 162 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 218 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 219 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 278 Query: 149 FSLKING 155 +++ G Sbjct: 279 IAIEDTG 285 >gi|67640760|ref|ZP_00439555.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4] gi|121596756|ref|YP_991312.1| sensor histidine kinase [Burkholderia mallei SAVP1] gi|124381600|ref|YP_001025722.1| sensor histidine kinase [Burkholderia mallei NCTC 10229] gi|126445836|ref|YP_001077802.1| sensor histidine kinase [Burkholderia mallei NCTC 10247] gi|166999401|ref|ZP_02265240.1| sensor histidine kinase [Burkholderia mallei PRL-20] gi|254176071|ref|ZP_04882729.1| sensor histidine kinase [Burkholderia mallei ATCC 10399] gi|254201107|ref|ZP_04907472.1| sensor histidine kinase [Burkholderia mallei FMH] gi|254205077|ref|ZP_04911430.1| sensor histidine kinase [Burkholderia mallei JHU] gi|254359197|ref|ZP_04975469.1| sensor histidine kinase [Burkholderia mallei 2002721280] gi|121224554|gb|ABM48085.1| sensor histidine kinase [Burkholderia mallei SAVP1] gi|126238690|gb|ABO01802.1| sensor histidine kinase [Burkholderia mallei NCTC 10247] gi|147748719|gb|EDK55794.1| sensor histidine kinase [Burkholderia mallei FMH] gi|147754663|gb|EDK61727.1| sensor histidine kinase [Burkholderia mallei JHU] gi|148028384|gb|EDK86344.1| sensor histidine kinase [Burkholderia mallei 2002721280] gi|160697113|gb|EDP87083.1| sensor histidine kinase [Burkholderia mallei ATCC 10399] gi|238521533|gb|EEP84984.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4] gi|243064472|gb|EES46658.1| sensor histidine kinase [Burkholderia mallei PRL-20] gi|261826403|gb|ABM99272.2| sensor histidine kinase [Burkholderia mallei NCTC 10229] Length = 389 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|86750380|ref|YP_486876.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573408|gb|ABD07965.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 704 Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--------LLNLFMVAHASLPR 132 + LGD D + R ++ E +I LLNL + A ++P Sbjct: 409 VDLGDAVMKFADVLRQSVRSDIAIAIEPPTEP-VVVQIDPNEFEIALLNLALNARDAMPD 467 Query: 133 GGKVTISVQDSKNENIFSLKINGNLA 158 GG++TIS++ +N ++ G+ A Sbjct: 468 GGRITISIRTETLKNFGPRRLTGDYA 493 >gi|319777865|ref|YP_004134295.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171584|gb|ADV15121.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 643 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 23/179 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFG-------- 72 HD + + AI SLELL + +D + +L+ + + A L LAF Sbjct: 293 HDFNNLLMAILGSLELLRKRLPDDPQLLRLLDNAVLGARRGASLTQRMLAFARRQQLDPK 352 Query: 73 ---YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128 G + + L + I + + ++ + + ++ LLNL + A Sbjct: 353 PVDLIGLIHGMKDLLERSLGSRAIIETKFPLSLD----RVMVDESQIELALLNLCVNARD 408 Query: 129 SLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++P GG + IS + + E+ + G +G E T+ + + ++ Sbjct: 409 AMPGGGTIVISTRMEQVGESKEAGLAPGPYVCL--SVADAGEGMDEETL-ARATEPFFT 464 >gi|56696905|ref|YP_167267.1| sensory box sensor histidine kianse/response regulator [Ruegeria pomeroyi DSS-3] gi|56678642|gb|AAV95308.1| sensory box sensor histidine kianse/response regulator [Ruegeria pomeroyi DSS-3] Length = 768 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 17/132 (12%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + AI +LL D+ + + I ++ A + + LAF + Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAALVSQL-LAF--SRKQTL 463 Query: 80 LIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHAS 129 + D+ + D I V ++V ++ + + + S R+ ++L+NL + A + Sbjct: 464 RPEVLDLRDTLADLIHLLNRLVGEKVTLTLSHDPVLKSVRADKRQLEQVLMNLVVNARDA 523 Query: 130 LPRGGKVTISVQ 141 +P+GG++ I + Sbjct: 524 MPQGGEIRIETE 535 >gi|39935204|ref|NP_947480.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39649055|emb|CAE27576.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 707 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 15/122 (12%) Query: 48 EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 +I + L F R + LGD D + R + Sbjct: 376 RSFDMIDSAVAKGTALTRQLLSFSR----RHNVAAKAVDLGDAVTKFADVLRQSVRSDIG 431 Query: 104 WTGEKID-------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + E LLNL + A ++P GG++TIS++ +N K+ G Sbjct: 432 IMIDPPAEPVVVMIDPNEFEIALLNLALNARDAMPDGGRITISIRTETLKNFGPRKLTGT 491 Query: 157 LA 158 A Sbjct: 492 YA 493 >gi|167923509|ref|ZP_02510600.1| sensor histidine kinase [Burkholderia pseudomallei BCC215] Length = 389 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|303246915|ref|ZP_07333191.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491622|gb|EFL51505.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 583 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 26/156 (16%) Query: 19 CSRICHDIISPI---GAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70 +R+ H+I +P+ G N + L E + E + +I + L F R A Sbjct: 375 AARLTHEIKNPLMLMGGFANQVRRHLPEKAADAEKLGIIEEEAKRLESLLTEVRDFTRPA 434 Query: 71 FGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRERAKI---L 119 I D + E + V G+ + + A++ Sbjct: 435 -------PPQIEPRDFNATVKESLAIMAEALSSRSIEVTSRLDGDMPPVPHDAARLKQVC 487 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 +NL A ++ GGK+TI Q + + G Sbjct: 488 INLIKNAAEAMETGGKLTIVTQAVGGKARLIVADTG 523 >gi|152965197|ref|YP_001360981.1| integral membrane sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] gi|151359714|gb|ABS02717.1| integral membrane sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] Length = 396 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 12/158 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS------AIIRLKFMRLAF 71 L + + H++ +P+ A+H +E L + E + L + + L RL Sbjct: 161 LVANVSHELRTPVSALHAVMENLVDGVSEPDHETLATALAQTERLGRLVEQLLDLSRLDA 220 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKI---LLNLFMV 125 G + L +++ R + + + + A++ + NL Sbjct: 221 GAVALDREELALEPFLAQATRAMSMTGRDVRFVLDVDPPGLSVDVDSARLHQVVANLLDN 280 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A P GG+V +S S++ G ++ Sbjct: 281 ASRHSPPGGEVFVSAHAVGQVVRISVRDQGPGIPDADR 318 >gi|148262167|ref|YP_001228873.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395667|gb|ABQ24300.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 372 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 77/223 (34%), Gaps = 34/223 (15%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLK-----F 66 ++ A+L H+I +P+G+I + E+L D+ D + I + RL F Sbjct: 153 EMAAVLA----HEIRNPLGSIRGTAEILKDDYNPGDPKHEFIEIQIKETE-RLNRVVEDF 207 Query: 67 MRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKR---VQVSWTGE------KIDLS 112 + +A L D + I +A D R +++ + D Sbjct: 208 LHMA------RPQPADLRPCPVQDELETIVTLVANDARDRQIKLVLQPPPFPVIIRADGE 261 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGN 171 + R + LN+ + A + P G V IS + + +G E +I + Sbjct: 262 KLR-QAFLNIIINALQATPPSGSVIISTTIYQAALCEIRFRDSGPGI-DAETLGRIFEPF 319 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + + + ++ E H ++ L Sbjct: 320 FTTKPDGTGLGLAITRKIIESHGGTMMVESESGHGTTVTVRLP 362 >gi|255600751|ref|XP_002537525.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223516032|gb|EEF24858.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 429 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 22/225 (9%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMS 59 M++ + + +L LL + HD+ +P+ + S+E+LD E ++ ++Q I M Sbjct: 208 MSEALARTEADRNL--LLGG-VSHDLRTPLARLRLSVEMLDQETDLKSGMVQDIDD--MD 262 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 AIIR +F+ G G V+ + I + E + +R + R A Sbjct: 263 AIIR-QFLAYVRGAEGEVEVTGDVNQLIRDISERYERQGRRPTLELGRVPQFAFRPLAMQ 321 Query: 117 KILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVD 169 +++ NL + GG VT+ + + + S+ G R F ++ Sbjct: 322 RLITNLV---DNAYHYGGSSVTVQTRVKDSRLMLSVLDRGPGLPEGETERLLRPFERLDT 378 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A + + + D + ++ Sbjct: 379 SRGREG--GSGLGLAIATRIARLHDGEIKLKNRKDGGLEAMVIIP 421 >gi|126442901|ref|YP_001063306.1| Signal transduction histidine kinase [Burkholderia pseudomallei 668] gi|126222392|gb|ABN85897.1| signal transduction histidine kinase [Burkholderia pseudomallei 668] Length = 389 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|320333682|ref|YP_004170393.1| histidine kinase [Deinococcus maricopensis DSM 21211] gi|319754971|gb|ADV66728.1| histidine kinase [Deinococcus maricopensis DSM 21211] Length = 308 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 6/191 (3%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-RLAFGY----TGS 76 + H+ +P+ AI LE L+ + +R A ++ + LA G+ + Sbjct: 109 LSHEFRTPVAAIKGVLEALEYEMPMEMQRSFVRQGLAEAERLVRLVDDLAVGFRPTRART 168 Query: 77 VDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135 + E+++ D A R+ + ++LLNL A PR G Sbjct: 169 QPLAESVARAERLLGADLAASSVRLTREGDALVRADPDKLLQVLLNLVENAARYGPRPGT 228 Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195 V + ++ ++ +G + E + +T + + Y V + Sbjct: 229 VRVEARERGQWVEVAVLDDGPPIQDTEDLFRAHTRGKGATGNGSGMGLYIVRSIVQGWGG 288 Query: 196 RLLPEIIDDHN 206 + E N Sbjct: 289 QAWAERRGSAN 299 >gi|283781767|ref|YP_003372522.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283440220|gb|ADB18662.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 252 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 24/169 (14%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSA 60 S +L AL S + H+I +P+ I ++ELL E E + I + S Sbjct: 16 LRASYQELAALAGS-LAHEIKNPLSVIRMNMELLAEDFATPQTPKERRALAKIEMVSRQC 74 Query: 61 IIRLK-----FMRLAFGYTGSVDSLIG-LGDIEQVIEDFIAVDKRVQ-------VSWTGE 107 RL+ F+R F G +D +G L + + D R Sbjct: 75 T-RLENLLNDFLR--FSRAGRLDIRLGNLNEQIARVLDLFDAQSRENGVEVIRYFDHDLP 131 Query: 108 KIDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 + + E + L NL A ++P GG++ + ++N L G Sbjct: 132 SVSIDPEALQAALVNLVKNALEAMPAGGQLVARTRITRNGVALDLIDTG 180 >gi|254293645|ref|YP_003059668.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042176|gb|ACT58971.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 465 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 20/162 (12%) Query: 17 LLCSR-----ICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIR 63 ++ SR I HD+ SP+ + N LE D G + ++ + + Sbjct: 239 MIASRYSGDAIAHDLRSPLARLRNHLESSLAQTGDRQDFEGALEYSIEEVDRVLETFNAI 298 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRER-AK 117 L+ ++ G +G+ D + +V E + AV + Q++++ + ++ + + Sbjct: 299 LRLSKVQGGQSGTFDRFSLSEQVVEVAEIYEAVCEEAQLAFSSDIKSNLELHADKSLIMQ 358 Query: 118 ILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLA 158 ++ NL A P GG V + + E S+ +G Sbjct: 359 LIFNLMDNAVKYTPAGGAVKLVLRRRRNGEVELSVLDSGPGI 400 >gi|153004358|ref|YP_001378683.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027931|gb|ABS25699.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 519 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + +A+L H++ +P+GAI +L L D+ + + R + L+ R+ Sbjct: 157 EFLAMLG----HELRNPLGAILLALPLFRSSDDERPRGIIDRQARRLARLVDDLLEVSRV 212 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRE-RA-KILLN 121 G ++ L ++ +A R+Q W + R +I+ N Sbjct: 213 TRGQITLRREVVDLNELVGEAVAGLAEAARLQGLDLAVSLWREPVPIHADPVRVEQIVAN 272 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 L A P GG+VT+ V + + +G Sbjct: 273 LLANALKYTPSGGRVTVLVARRNEKASIRVSDDG 306 >gi|115377898|ref|ZP_01465084.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310823059|ref|YP_003955417.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365113|gb|EAU64162.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309396131|gb|ADO73590.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 513 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 72/178 (40%), Gaps = 32/178 (17%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQLIRLSSMS 59 + L A+ + +++ H++ +P+ +I ++E+L++ E L+ + Sbjct: 287 AEQLAAVGRISAQVAHEVRNPLSSIGLNVEMLEDALAHATFSDPEEARETKDLLAAVTRE 346 Query: 60 AIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106 + RL +++R+A + D+ +V+ + +V + Sbjct: 347 -VDRLTDVTEQYLRMA----RPPKPTLVAEDVTEVLGSLLDFSREELERAGVQVVRHFDP 401 Query: 107 EKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + + + ++ LNL + ++P GG++T++++ E ++ G P Sbjct: 402 DTPLVMADEGQLRQVFLNLVRNSREAMPGGGRLTVTIRGIDKEVEVFVQDTGRGMPEP 459 >gi|301384628|ref|ZP_07233046.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13] gi|302058919|ref|ZP_07250460.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40] gi|302133032|ref|ZP_07259022.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 468 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ + + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + D RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLTADGDGRVTQQGEAQAAYPGKPLALMRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|189425218|ref|YP_001952395.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421477|gb|ACD95875.1| integral membrane sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 498 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 68/172 (39%), Gaps = 23/172 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS----MSAIIRLKFMR 68 LL + H+I +P+ ++ E+L + + + I S L++ R Sbjct: 278 LLAAGTAHEIGTPLASVMGYAEILAQELEHNPAHADYLARIMDSCGRIDRIVKGLLEYAR 337 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDL---SRERAKILL 120 +V + L + Q + + ++ ++ + ++L+ Sbjct: 338 ----PKQTVHEPVDLSLLMQATVELLQHQGFFKGIKLTMTTEPASSLASLDPHQLQQVLI 393 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKI--NGNLARFPEKFTQIVDG 170 NL + A ++P+GG++ ++++ ++ I L++ G PE ++ D Sbjct: 394 NLLINASDAMPQGGEIKLALKQGADKKILLLEVWDTGTGI-APEHLGKLFDP 444 >gi|119897999|ref|YP_933212.1| osmolarity sensor protein [Azoarcus sp. BH72] gi|119670412|emb|CAL94325.1| probable osmolarity sensor protein [Azoarcus sp. BH72] Length = 461 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 7/151 (4%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 AL+ + + HD+ +P+ + +E+ EDEV ++ I +F+ G Sbjct: 243 ALILAGVSHDLRTPLARLRLGIEM--SGAPEDEVGAMVADIEEMDRIIGQFLDFGRGSAQ 300 Query: 76 SVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 + L ++ V E + R+++ + + ++ L + +L G Sbjct: 301 EPPQALDLVELVGSVCEPYRLRGCRIELE-MPASLVTAGRALQLRRALANLIDNALRYAG 359 Query: 135 K---VTISVQDSKNENIFSLKINGNLARFPE 162 + + + V+ E + + G E Sbjct: 360 EDKPLLVRVERGMGEALVEVADRGPGIPENE 390 >gi|82703136|ref|YP_412702.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82411201|gb|ABB75310.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 538 Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 30/184 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + I N +E++ + +++ S A + L F R Sbjct: 289 IAHDFNNLLNVIVNGIEIIAKQAQTPTSTRML-ESMQRAAAQGTMLTQQLLTFAR----- 342 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKIDLSRERAKI-LLNLF 123 ++ VI F V +R ++ + + + LLNL Sbjct: 343 --KQPLKQDKYNLNHVIRSFEPVLRRANKGSVEFDVKLDPLLPPVIIDAPHFEAALLNLV 400 Query: 124 MVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 + A + P GG +T+S + + +E + G + G + + + ++ Sbjct: 401 INARDATPDGGAITLSTEQLELDEKEINELPAGRYVKV--TVKDTGTGMLPE-VAAQAVE 457 Query: 183 FYYV 186 ++ Sbjct: 458 PFFT 461 >gi|323487549|ref|ZP_08092842.1| hypothetical protein HMPREF9474_04593 [Clostridium symbiosum WAL-14163] gi|323399150|gb|EGA91555.1| hypothetical protein HMPREF9474_04593 [Clostridium symbiosum WAL-14163] Length = 685 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%) Query: 24 HDIISPIGAIHNSLEL--LDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 HD+ SP+ A+ N ++ L++ G E MQ I RL+ ++ G G++ Sbjct: 476 HDMKSPLTALSNMAQIIRLNDIMLDGDTREKMQGIEDKCSVLADRLESIQELAGEAGALP 535 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLS-------RERAKILLNLFMVAHA 128 + L + + + + V+++ E L R+ + L NL A Sbjct: 536 QMEPLSLNRFLADFYRSNQPVVELTGPDFLCELTPLPCTVMADSRKLTRALENLVFNAGE 595 Query: 129 SLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 P GK+ +S++ +N + + G A P+ F ++ + + Sbjct: 596 FTPPDGKIVLSLKREQNFALICVADTGCGIPEAEIPKVFDRLYTTREDEG--GQGLGLSI 653 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E+ + E + L Sbjct: 654 TRAIVLEHGGEISVESVVGGGSTFVIRLP 682 >gi|217979692|ref|YP_002363839.1| PAS/PAC sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217505068|gb|ACK52477.1| PAS/PAC sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 650 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 15/134 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---LKFMRLAFGYTGSVDSL 80 HD + + AI SLEL+ + D + + +++ A R L LAF + Sbjct: 290 HDFNNLLMAILGSLELVQKRLPADPKIASLIDNAILAAQRGTSLTQRMLAF--ARRQELE 347 Query: 81 IGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 + D+ ++ I ++V + + + ++ LLNL + A ++ Sbjct: 348 LEPVDVLALVRGMTDLLQRSIGPSAPIEVRFPLALEPVQADANQLELALLNLVVNARDAM 407 Query: 131 PRGGKVTISVQDSK 144 P GG + I+ + Sbjct: 408 PNGGAIIIAARQEA 421 >gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] Length = 606 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 93 FIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 + V R + I + K + N+ A ++P GG++TIS + L Sbjct: 477 LMNVSIRTEFENCIPSIYCDENQLKQVFINIIKNAIEAMPLGGQITISAAMESDHERVRL 536 Query: 152 KINGNLARFPEKFTQIVD 169 I P++ + + Sbjct: 537 TIRDEGMGIPDEIIRQIG 554 >gi|168704272|ref|ZP_02736549.1| multi-sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 253 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + + +IL+NL + A ++P GG++ I V+DS + + +K+ +++ Sbjct: 135 VPGQIEQILVNLVLNARQAMPNGGRLKIEVRDSLDADTVEIKVADTGVGIAPDQLRLI 192 >gi|148259726|ref|YP_001233853.1| osmosensitive K+ channel signal transduction histidine kinase [Acidiphilium cryptum JF-5] gi|146401407|gb|ABQ29934.1| osmosensitive K+ channel signal transduction histidine kinase [Acidiphilium cryptum JF-5] Length = 867 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKF------ 66 ALL S + HD+ +P+ AI + E L E E L+ +F Sbjct: 644 ALLSS-LSHDLRTPLTAIRGAAETLAEADGELPEATRRDLLASIVEDVGRMTRFLANITG 702 Query: 67 -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122 R+ G + + L + + + V+ + + + A ++L+NL Sbjct: 703 MARIETGEIVARHEKVDLAPVVEHAVARVKEAFHTAVNIPEDAATVRADPALLEQVLVNL 762 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A P GG +++ + + + + S+ G + Sbjct: 763 LENAVKYGPEGGAISVFARRAGDSVVLSVADEGVGIPPEDL 803 >gi|108761720|ref|YP_631245.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108465600|gb|ABF90785.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 514 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 12/105 (11%) Query: 117 KILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-----IVD 169 K+L+NL A ++P G G+V + + F ++++ N PE + + Sbjct: 405 KVLINLVQNAVEAMPAGRLGRVDVFAEGGNGS-AFIIRVSDNGMGIPEAMQERIFEPLFT 463 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + V ++ L E + V + L Sbjct: 464 TKPAGTGLGLSV----VASTVRQHGGTLRVESREGEGSVFTLCLP 504 >gi|108805803|ref|YP_645740.1| periplasmic sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108767046|gb|ABG05928.1| periplasmic sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 471 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 14/131 (10%) Query: 97 DKRVQVSWTGEKIDLS----RERAKILLNLFM-VAHASLPRGGKVTISVQDSKNENIFSL 151 RV V W + + RER + L + A P GG+V++ + + Sbjct: 337 GDRVSVVWEPPEGPVEAVFDRERVRQALAALLDNAVRYTPEGGRVSVRALRRDGKAAVRV 396 Query: 152 KINGNLARFPEKFTQIV-------DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 + G PE+ ++ DG + + +A + + + Sbjct: 397 EDTGPG--IPEEQLGMIFERFYRVDGTRSRRLGGAGLGLSIARQIAEAHGGAIEVRSVPG 454 Query: 205 HNVVLSALLEK 215 + LL + Sbjct: 455 EGSSFTLLLPQ 465 >gi|330006921|ref|ZP_08305792.1| sensor protein CreC [Klebsiella sp. MS 92-3] gi|328535637|gb|EGF62087.1| sensor protein CreC [Klebsiella sp. MS 92-3] Length = 474 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 29/209 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70 H++ SP+ AI + E+L E + MQL+ + RL+ RL Sbjct: 265 HELKSPLAAIRGAAEILREEPPPEVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322 Query: 71 FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + + + Q + + K + + W + ++ + A+ L NL Sbjct: 323 I-----KQQPVSIDALYQRLTEERNIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181 A P+GG++ ++ + E S+ NG F + E S + Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +V +A + + + VV + Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466 >gi|253701720|ref|YP_003022909.1| histidine kinase [Geobacter sp. M21] gi|251776570|gb|ACT19151.1| histidine kinase [Geobacter sp. M21] Length = 356 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFM----- 67 ALL S I HD+ +P+ +I +L L E G + L+ ++ A +F+ Sbjct: 132 ALLNS-ISHDLRTPLVSIKGALSALKEQGGRLSPEARRDLLDTANDEAERLNRFVGNLLD 190 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA---KIL 119 RL G L ++ + D+ V V + + ++L Sbjct: 191 LSRLEAGALRPRIEPCDLQELIGCAISAMESRLGDRNVSVQLPQGLTLVPLDLVLMIQVL 250 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 +NL A+ P GG + ++ + + S+ G A E F + V Sbjct: 251 VNLLDNANKYAPPGGSIEVAARVNGAWLTLSVADRGPGAPEAELSHIFDKFHRVQVPEKT 310 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R++ + + + LL Sbjct: 311 GGTGLGLSICKGIVEAHGGRIVARNRPEGGLAVEILLP 348 >gi|119187393|ref|XP_001244303.1| predicted protein [Coccidioides immitis RS] Length = 591 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGN--LARFPEKFTQIVDGNVESTIDSHDIQ 182 A + RGG + + + S+ +G+ + P + + G + + + +Q Sbjct: 26 ADEAAVRGGALVLPEPGEDDTPPRSVHADGDSHHSTDPAHVAEQLHGRLTKHVYARQVQ 84 >gi|332528170|ref|ZP_08404201.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332112741|gb|EGJ12534.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 585 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 29/221 (13%) Query: 18 LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 + S I H++ P+ AI N + + G D +R + + + R A Sbjct: 363 MASNIAHELNQPLAAITNYAEGMTRYIDAGRSDTAF--LRDGARGIAGQAE--RAAVIIR 418 Query: 75 GSVDSLIGLGDIEQVIE------------DFIAVDKRVQVSWTGEKIDLSRERAKI---- 118 + + ++ A + + + W + +I Sbjct: 419 RIRGFVRRRDARREPLDLDVVVGETLPLFAHAAARRAIPLVWRPHGALPAVNADRIEIEQ 478 Query: 119 -LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 LLNL A + P G + ++ + +++ +G+ PE ++ D Sbjct: 479 VLLNLLQNALDATPDGVAHERGIVVTTAQGEAGVELTVRDHGSGL-PPEVQARLFDPFFT 537 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + RL D + +L Sbjct: 538 TKPQGLGLGLSICRTIVESHGGRLTASAEADGGATMRVVLP 578 >gi|323137621|ref|ZP_08072698.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397247|gb|EFX99771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 501 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 25/204 (12%) Query: 22 ICHDIISPIGAIHNS---LELLDEVGIE---------DEVMQLIRLSSMSAIIRLKFMRL 69 + H++ +P+ I N+ L LL++ + + + + L+ R+ Sbjct: 271 LAHELRNPLAPIKNAVHVLRLLEDDDSATKEKRRAALERAGRQVDHMARLVDDLLEITRI 330 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL---LN 121 + G + L I D A R+ V + E + + + ++ N Sbjct: 331 SHGKVELRKARTDLAAILTQAIDLSQPQIQAGSHRLAVDLSTEPLQIDGDPVRLAQVFTN 390 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTI 176 L A GG++ I+ E + +++ NG + V+ Sbjct: 391 LINNAARYTDAGGRIEIAAARDGEEAVVTVRDNGIGIPRQQLSSIFEMFAQVEPTCRRAP 450 Query: 177 DSHDIQFYYVILLAHENKIRLLPE 200 + + + R+ Sbjct: 451 GGIGVGLALARSVVQLHGGRIEAR 474 >gi|192290811|ref|YP_001991416.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284560|gb|ACF00941.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 707 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 15/122 (12%) Query: 48 EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103 +I + L F R + LGD D + R + Sbjct: 376 RSFDMIDSAVAKGTALTRQLLSFSR----RHNVAAKAVDLGDAVTKFADVLRQSVRSDIG 431 Query: 104 WTGEKID-------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 + E LLNL + A ++P GG++TIS++ +N K+ G Sbjct: 432 IMIDPPAEPVVVMIDPNEFEIALLNLALNARDAMPDGGRITISIRTETLKNFGPRKLTGT 491 Query: 157 LA 158 A Sbjct: 492 YA 493 >gi|153870924|ref|ZP_02000220.1| two-component, sensor histidine kinase [Beggiatoa sp. PS] gi|152072615|gb|EDN69785.1| two-component, sensor histidine kinase [Beggiatoa sp. PS] Length = 438 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%) Query: 22 ICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAFG 72 I HD+ +P+ + N LE + ++ MQL S A L+ ++ G Sbjct: 227 IAHDLRTPLTRLRNRLEQMRWQNPNTDEYNMQL-EKSITEADQLLATFNALLRIAKIESG 285 Query: 73 YTGSVDSLIGL----GDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLN 121 S + L D ++ E + Q+ G++ L + ++N Sbjct: 286 SHSSRQEPVNLEALVRDASELYEALAEDKNQSLTLKLIPQLQVQGDRDLLF----QAIVN 341 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 L A P GGK+ I + K+ + G Sbjct: 342 LLDNAVKYTPSGGKIGIILFKYKDIIEIIVTDTGPGIPIEA 382 >gi|148243999|ref|YP_001220237.1| osmosensitive K+ channel signal transduction histidine kinase [Acidiphilium cryptum JF-5] gi|146400562|gb|ABQ29095.1| osmosensitive K+ channel signal transduction histidine kinase [Acidiphilium cryptum JF-5] Length = 867 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKF------ 66 ALL S + HD+ +P+ AI + E L E E L+ +F Sbjct: 644 ALLSS-LSHDLRTPLTAIRGAAETLAEADGELPEATRRDLLASIVEDVGRMTRFLANITG 702 Query: 67 -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122 R+ G + + L + + + V+ + + + A ++L+NL Sbjct: 703 MARIETGEIVARHEKVDLAPVVEHAVARVKEAFHTAVNIPEDAATVRADPALLEQVLVNL 762 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A P GG +++ + + + + S+ G + Sbjct: 763 LENAVKYGPEGGAISVFARRAGDSVVLSVADEGVGIPPEDL 803 >gi|134278765|ref|ZP_01765479.1| sensor histidine kinase [Burkholderia pseudomallei 305] gi|237510145|ref|ZP_04522860.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|134250549|gb|EBA50629.1| sensor histidine kinase [Burkholderia pseudomallei 305] gi|235002350|gb|EEP51774.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346] Length = 389 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|313680723|ref|YP_004058462.1| histidine kinase [Oceanithermus profundus DSM 14977] gi|313153438|gb|ADR37289.1| histidine kinase [Oceanithermus profundus DSM 14977] Length = 301 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 20/202 (9%) Query: 22 ICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 + H+ +P+ + LE+L+ G ++ + L+R + + +RL G + Sbjct: 105 LAHEFRTPVAGLLALLEVLESGPEPGDREQALALMREEAA------RLLRLVQGQGQART 158 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGG-- 134 L ++ +E + + W+ + ++LLNL +L G Sbjct: 159 PPWRLDELRPRLERLLP--GARALRWSTPHPVTAGRDPIFQVLLNLV---ENALRYGKPP 213 Query: 135 -KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193 +V V + + LA + F G + + + V +A Sbjct: 214 VEVRTRVHAPGVVAVEVVDAGEPLADYERLFVPGGRGMHAAGVRGSGLGLALVRRIARGW 273 Query: 194 KIRLLPEIIDDHNVVLSALLEK 215 +++ N + + Sbjct: 274 GGEAYGRRLEEGN-AFGVTVPE 294 >gi|21674198|ref|NP_662263.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 337 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 13/131 (9%) Query: 42 EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIGL----GDIEQVIEDFIAV 96 E + +++I +++ A ++ + LAF +++ ++ L D EQ++ I Sbjct: 8 ETDKRHKRIEVIHHAALRARGLVQQL-LAFSSRQTLEFRMLDLNRVVRDFEQLLRRTIRD 66 Query: 97 DKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTI----SVQDSKNENIF 149 D ++ ++ + + +I ++NL + A ++P GG++T+ V E F Sbjct: 67 DINIRYHLHDGRLVIQGDVGQIKQIIMNLAVNAEDAMPSGGELTVKTSTMVIGKGQEKYF 126 Query: 150 SLKINGNLARF 160 +G+ A Sbjct: 127 EGLPSGDYAVL 137 >gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS] Length = 808 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 25/156 (16%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI----R 54 +++ + M+LV L I HD + +G I + EL D +E +Q I Sbjct: 428 QSVLLQIQKMELVGQLAGGIAHDFNNMLGVILGNAELALSSDDLEASVEENLQEIYRAAE 487 Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKI 109 S+ L F R ++ L I +V++D + +++++ Sbjct: 488 RSAEMISQLLAFAR-------KQTAMPKLVHINEVVQDSLPILQRVAGEKIEIELRPCGD 540 Query: 110 DL-----SRERAKILLNLFMVAHASLPRGGKVTISV 140 D + +IL+NL + A ++ GK+ I V Sbjct: 541 DCRLHIDPSQIDQILMNLCLNARDAMNGTGKIVIEV 576 >gi|326403307|ref|YP_004283388.1| two-component sensor histidine kinase [Acidiphilium multivorum AIU301] gi|325050168|dbj|BAJ80506.1| two-component sensor histidine kinase [Acidiphilium multivorum AIU301] Length = 867 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKF------ 66 ALL S + HD+ +P+ AI + E L E E L+ +F Sbjct: 644 ALLSS-LSHDLRTPLTAIRGAAETLAEADGELPEATRRDLLASIVEDVGRMTRFLANITG 702 Query: 67 -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122 R+ G + + L + + + V+ + + + A ++L+NL Sbjct: 703 MARIETGEIVARHEKVDLAPVVEHAVARVKEAFHTAVNIPEDAATVRADPALLEQVLVNL 762 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A P GG +++ + + + + S+ G + Sbjct: 763 LENAVKYGPEGGAISVFARRAGDSVVLSVADEGVGIPPEDL 803 >gi|196233309|ref|ZP_03132154.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196222614|gb|EDY17139.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 900 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70 L S + HD+ + + I S+ LL E + V+ I LS+ +K F R Sbjct: 516 LASGVAHDLNNILSPIMMSVPLLRRNLEKETFENVISTIELSATRGAEIVKQVLTFGRGL 575 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125 G + +I +++ D R++ W + +LNL + Sbjct: 576 DGVRRPTSLASIIQEIIKILGQTFPKDIRIETELAPDLWRVVGDSTQLHQV--MLNLCVN 633 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A ++P GGK+ I +++ ++ ++ + G A Sbjct: 634 ARDAMPTGGKLRIRGKNAMVDSSYAGMLPGATA 666 >gi|168705337|ref|ZP_02737614.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1013 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 17/177 (9%) Query: 24 HDIISPIGAIHNS-----LELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGS 76 HD + + I N LE L G D V Q+ +A + + LAF Sbjct: 656 HDF-NNLLTIINGYGQILLEQLTIGGPARDMVQQMTAAGERAAGLTAQL--LAFSRKAIV 712 Query: 77 VDSLIGLGD----IEQVIEDFIAVD--KRVQVSWTGEKIDLSRERA-KILLNLFMVAHAS 129 +I L + ++ I D ++ ++ + ++LLNL + A + Sbjct: 713 APKVIDLNEVVTQAASLLRRLIGEDIILTTALANDLSRVTADPTQVEQVLLNLAVNAKDA 772 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +PRGG++TI ++ + + + + + + + + ++ Sbjct: 773 MPRGGRLTIETRNVRLNREMPAWPDCPPGDYVQLAVSDTGVGMTEEVKARLFEPFFT 829 >gi|302039538|ref|YP_003799860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607602|emb|CBK43935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 465 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 28/166 (16%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEV---MQLIRLSSMSA 60 + L AL L + + H++ +P+ AI +L LL+E G + ++++ Sbjct: 228 AEKLAALHTLSAGVAHELRNPLSAIDLNLHLLEEEFKEQGGPAKQAAYYLRVLNAECRRL 287 Query: 61 IIRL----KFMRLAFGYTGSVD-SLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLS 112 + L KF R GS+ + L + + I + A ++++Q+ K Sbjct: 288 SVILDNFMKFAR-----PGSMGLHAVDLPALIEHIVALMRFEAEERKIQLEQRVSKDMSP 342 Query: 113 -----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + +++L+N+ + A ++P GG+ +I+ ++ E ++I Sbjct: 343 VLGDETQISQVLVNIVVNAFHAMPNGGRCSIATEERTEEGKRWVEI 388 >gi|210613902|ref|ZP_03289966.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787] gi|210150927|gb|EEA81935.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787] Length = 248 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 19/154 (12%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------------LIRLSSM-SAI 61 L+ S+I H++ +P+ I+++L+L++ E L+ S + Sbjct: 12 LVISKISHELRNPLTIIYSTLQLIESRHPEARTFDHWHELMQDVEFMSVLLDDLSRFNHA 71 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121 L F +F I L V + + ++ S D ++ + ++ LN Sbjct: 72 GALNFSTFSF---RPFWEYISLSFAASVADTKLEYFSKIDSSINQITGDKTKLQ-EVFLN 127 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 L A + G ++++ + SK+ I ++ NG Sbjct: 128 LLRNAADAASPDGTISMTAEQSKDSIIIQVQDNG 161 >gi|116252477|ref|YP_768315.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257125|emb|CAK08220.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 720 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 14/159 (8%) Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104 D +Q R + L F R + L ++ + D + +S Sbjct: 366 DGAIQGARRGAALTQRLLAFAR----QQDLQVKPVDLAELVSGMNDLLRRSVGSSISIET 421 Query: 105 ----TGEKIDLSRERAKI-LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 T + + ++ LLNL + A ++P GG ++IS++ + + G A Sbjct: 422 ILPATLPPALVDANQLELALLNLAVNARDAMPDGGTLSISLRKEQVAGN---EALGKGAY 478 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198 G T+ F+ L + L Sbjct: 479 LVLAVADSGTGMDAETLKKAVDPFFSTKELGKGTGLGLS 517 >gi|116621995|ref|YP_824151.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225157|gb|ABJ83866.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 665 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVES 174 ++L NL + A ++P GG +TI+ + + G + + + Sbjct: 564 QVLFNLVVNARDAMPHGGILTIATSSDGSNVQLVISDTGVGM-TEDVRRHLFRPFFRTDE 622 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + +N ++ + L Sbjct: 623 ECTAAGLGMATTYRIIRQNGGQIEVDSSPGGGARFRIQLP 662 >gi|311108904|ref|YP_003981757.1| heavy metal sensor kinase family protein 3 [Achromobacter xylosoxidans A8] gi|310763593|gb|ADP19042.1| heavy metal sensor kinase family protein 3 [Achromobacter xylosoxidans A8] Length = 460 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 71/191 (37%), Gaps = 18/191 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-------SMSAIIRLKFMRLAFG--YT 74 H++ +P+ + + E+ ++ ++ + S + + + F+ A G Sbjct: 245 HELRTPLATLISGAEVSLSSPRSEQELREVLESNLEELEGLKALVNDMLFLARADGGEPA 304 Query: 75 GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASL 130 G + + ++ +V E + A D V ++ G + ++ R + + NL A + Sbjct: 305 GDLQEVNVRQEVARVAEYYEAALDDAGVSLAAHGGAVLMANPRLLRRAIANLLSNAIRAT 364 Query: 131 PRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGN--VESTIDSHDIQFYY 185 PRG + + ++E ++ G P F + G+ D H + Sbjct: 365 PRGRGIDLYCVTRQDEIEIRVRNPGAPIAAQALPRIFDRFYRGDDARSRRADGHGLGLAI 424 Query: 186 VILLAHENKIR 196 V +A + Sbjct: 425 VRAIARMHGGN 435 >gi|259416210|ref|ZP_05740130.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259347649|gb|EEW59426.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 924 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 15/125 (12%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SSMSAIIRLKFMRLAFG 72 L + + HD + + A+ N L + +QL SS +A + +F+ L G Sbjct: 553 LAAGVAHDF-NNLLAVINGHSALLNDRTPPDKVQLYSNRISEASSRAAKMINRFLDL--G 609 Query: 73 YTGSVDSLIGLG----DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMV 125 + S+I L + + ++ ++ D R + +++++ + ++ LNL Sbjct: 610 MSTDQQSMIDLRNLLTESQDLLHSALSADTRFTLDLDEDEMEMLCSPSDLLRVALNLVQN 669 Query: 126 AHASL 130 A +L Sbjct: 670 AQDAL 674 >gi|126457101|ref|YP_001076262.1| sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|167743368|ref|ZP_02416142.1| sensor histidine kinase [Burkholderia pseudomallei 14] gi|167828915|ref|ZP_02460386.1| sensor histidine kinase [Burkholderia pseudomallei 9] gi|167850384|ref|ZP_02475892.1| sensor histidine kinase [Burkholderia pseudomallei B7210] gi|226200063|ref|ZP_03795612.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|242313044|ref|ZP_04812061.1| sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|254185058|ref|ZP_04891647.1| sensor histidine kinase [Burkholderia pseudomallei 1655] gi|254186296|ref|ZP_04892814.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254194492|ref|ZP_04900924.1| sensor histidine kinase [Burkholderia pseudomallei S13] gi|254265390|ref|ZP_04956255.1| sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|254301346|ref|ZP_04968790.1| sensor histidine kinase [Burkholderia pseudomallei 406e] gi|126230869|gb|ABN94282.1| sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|157810934|gb|EDO88104.1| sensor histidine kinase [Burkholderia pseudomallei 406e] gi|157933982|gb|EDO89652.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|169651243|gb|EDS83936.1| sensor histidine kinase [Burkholderia pseudomallei S13] gi|184215650|gb|EDU12631.1| sensor histidine kinase [Burkholderia pseudomallei 1655] gi|225927915|gb|EEH23953.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|242136283|gb|EES22686.1| sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|254216392|gb|EET05777.1| sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 389 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 523 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 26/219 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSS----MSAIIRLKFMRL 69 S I H++ +P+ I E + + E +Q+I + L R+ Sbjct: 298 SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVISEEADRLARQIQDLLDVSRI 357 Query: 70 AFGYTGSVDSLIGLGDIEQ-VIEDFIAV-DKRVQVSWTGEKIDLS-----RERAKILLNL 122 A G S + L + V+ F A +R++ ++L NL Sbjct: 358 AAGGLRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDDLPPVYADYERMRQVLTNL 417 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVEST 175 A P GG + I + + I + G P + ++ D + Sbjct: 418 IENAVKYSPNGGVIRIGARAEGDMAIVYVSDQGIG--IPPEEQDLIFERFYRVDTRLRRD 475 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + R+ E + Sbjct: 476 QPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFFTIP 514 >gi|205375080|ref|ZP_03227871.1| histidine kinase [Bacillus coahuilensis m4-4] Length = 343 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIR- 63 S L L + + HD+ +P+ +I + +E +L + ++ + I+ S+ Sbjct: 115 ESERLKTELIANVSHDLRTPVASIRSHVEALIDQILTDEKTREQYLSTIKQESVKLSELL 174 Query: 64 ---LKFMRLAFGYTGSVDSLIGLGDIE-QVIEDF--IAVDKRVQVSWTGEK-----IDLS 112 L+ +L G + ++ V+ F +A K ++ ++ + + Sbjct: 175 EEVLQLSQLERGSVPFHPERTKVDELLVSVLSSFERMAEKKGIEFVVQIDEREDSILIVP 234 Query: 113 RERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPE 162 ++ ++L NL ++ G +TI V+DS IF + G F E Sbjct: 235 QQIHRVLSNLI---ENAIRYSNNGRTITIIVEDSGRATIFRVTDEGEGIPFEE 284 >gi|196230967|ref|ZP_03129827.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224797|gb|EDY19307.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 737 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 12/134 (8%) Query: 22 ICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73 I HD+ + + + ++++L + I + L+ ++ A +K F R G Sbjct: 356 IAHDLNNILQPVTMTMDVLRARLPDPSIRSM-LDLVINNAERAASLIKQVLSFARGVEGK 414 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 + + DI ++ + + + Q+ L + ++ LLNL + A ++ Sbjct: 415 RVPIPPETLVDDIANIVREVFPKNIQFQLRLAEGARPLLGDSTQLHQVLLNLCVNARDAM 474 Query: 131 PRGGKVTISVQDSK 144 P GG +T+SV+++ Sbjct: 475 PGGGTLTLSVENAD 488 >gi|220920746|ref|YP_002496047.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219945352|gb|ACL55744.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 605 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 19/153 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMS-----AIIRLKFMRLA 70 + H++ +P+ AI E+L +I SS L R+ Sbjct: 355 VSHELRTPLNAIIGFSEMLSAEAGLTLPVERQREYAVIIQSSGRHLLEVVNALLDLTRIQ 414 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDL-----SRERAKILLNL 122 G + + D + A V++ + R ++L+NL Sbjct: 415 SGSFDFAPEPFDIRAVVNGCCDLMQLRADQVGVELLRDVPRDLPELTADPRACRQMLINL 474 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 A PRGG+VT+SV+ + + S+ G Sbjct: 475 LSNAVKFTPRGGRVTVSVRQAYDRIELSVTDTG 507 >gi|85857964|ref|YP_460166.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85721055|gb|ABC75998.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 593 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 16/219 (7%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL---- 64 S L A+ L + + H+I +P+ +I +L E E+ Q I +S + RL Sbjct: 361 SRRLAAIGSLAAGVAHEIRNPLSSIKGFATVLRERHRENPEDQRIADIMISEVERLNRVI 420 Query: 65 ----KFMR-LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERA 116 +F R L S I ++ + E ++ + DL + Sbjct: 421 GQLLEFSRPLTMNRKDSAIEPILQHTVKMIEEQARKKGIDIRTEFPEGVPDLLIDPDKMT 480 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQIVDGNVEST 175 ++ LNL + A ++ GG +++ + + I G R P++ +I D + Sbjct: 481 QVFLNLSLNAVNAMDTGGTLSLKISRPEARTIRVDVADTGTGIR-PDELGRIFDPYFTTR 539 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + ++ V S L Sbjct: 540 PSGTGLGLPIAQRIVEAHGGKIAVASQQGKGTVFSVFLP 578 >gi|237654376|ref|YP_002890690.1| histidine kinase [Thauera sp. MZ1T] gi|237625623|gb|ACR02313.1| histidine kinase [Thauera sp. MZ1T] Length = 693 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 23/175 (13%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS---- 59 S L A+ L + + H+I +P I +L+LL E + ++LI Sbjct: 443 SEKLAAIGELTAGVAHEISNPTAVIQGNLDLLREELGPAAQPVANEIRLIHEQVGRIRLI 502 Query: 60 AIIRLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---R 113 L+F R A GY VD L D + +A + V + + Sbjct: 503 VTKLLQFARPGEFA-GYVEDVDVNAALADCLVLTRQHLARAEVKVVQRLAATARVQINLQ 561 Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEK 163 E ++L+NL + A ++P GG +T+ + +++ G R + Sbjct: 562 ELQQVLINLIVNAVQAMPAGGTLTLETVDRDPRQDARGVRITVRDTGGGIRAEDL 616 >gi|218662361|ref|ZP_03518291.1| integral membrane sensor signal transduction histidine kinase [Rhizobium etli IE4771] Length = 403 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 29/183 (15%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + + A R + + + GS + Sbjct: 198 VSHEVGNMIGIITGSLGLLERETGFNDRQKRHLAR-IRKAADRGRSLAGSMLSIGSQQPI 256 Query: 81 IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHA 128 ++ V+ IA+ ++ ++ + DL + +LNL + + A Sbjct: 257 HPSEVELGSVLRGMADVLEIAIGEKCRLDFEIA-DDLPMTFIDTALFEQSILNLCLNSAA 315 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG + I S+ S+ +G G +D + Y+ Sbjct: 316 AMPAGGTIRIRCARSEAGMTVSVTDDGI-------------GMTPEAVD-KAFEPYFTTR 361 Query: 189 LAH 191 A Sbjct: 362 DAQ 364 >gi|315442410|ref|YP_004075289.1| histidine kinase [Mycobacterium sp. Spyr1] gi|315260713|gb|ADT97454.1| histidine kinase [Mycobacterium sp. Spyr1] Length = 340 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 35/209 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFG 72 L + + HD+ +P+ I E + + + DE +++ + IRL ++ Sbjct: 116 LVAFVSHDLRTPLAGIRAVAEAIADGVVPDEEVRVHAKHIENESIRLSEMVDDLFEMSKI 175 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLS-------RERAKILLN 121 G++ + +++V++D IA +R V + R ++L N Sbjct: 176 NAGALTPTFDMVALDEVVDDVIAAHRMPAERAGVRLRASLPEQPVQVVGSDRALVRVLSN 235 Query: 122 LFMVAHASLPRGGKVT------------------ISVQDSKNENIFSLKINGNLARFPEK 163 L A A P GG V + + ++ +F + G+ +R P Sbjct: 236 LVANAIAHTPPGGTVELALGADEISAWARVDDTGVGIDEADLPRVFDVAYRGSNSRVPRS 295 Query: 164 FTQIVDGN-VESTIDSHDIQFYYVILLAH 191 + + G+ + I + +Q + L AH Sbjct: 296 DSSLPSGSGLGLAIAAGLVQAHRGTLTAH 324 >gi|150396735|ref|YP_001327202.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150028250|gb|ABR60367.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 872 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 25/192 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56 MA+ N L I HD + + AI S + LL + L I+ + Sbjct: 471 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 525 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106 + A + ++ + LAF ++ + +GD+ +++ + +V+V W Sbjct: 526 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 584 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 E+ LLNL + A ++P GG +T+ ++ + G E F Sbjct: 585 RTDLGQFEQV--LLNLAVNARDAMPAGGIITLRTRN---LPAGEVAALGRRELPEEDFVM 639 Query: 167 IVDGNVESTIDS 178 + + + I Sbjct: 640 VEVSDEGTGISP 651 >gi|145220642|ref|YP_001131320.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145213128|gb|ABP42532.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] Length = 340 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 35/209 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFG 72 L + + HD+ +P+ I E + + + DE +++ + IRL ++ Sbjct: 116 LVAFVSHDLRTPLAGIRAVAEAIADGVVPDEEVRVHAKHIENESIRLSEMVDDLFEMSKI 175 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLS-------RERAKILLN 121 G++ + +++V++D IA +R V + R ++L N Sbjct: 176 NAGALTPTFDMVALDEVVDDVIAAHRMPAERAGVRLRASLPEQPVQVVGSDRALVRVLSN 235 Query: 122 LFMVAHASLPRGGKVT------------------ISVQDSKNENIFSLKINGNLARFPEK 163 L A A P GG V + + ++ +F + G+ +R P Sbjct: 236 LVANAIAHTPPGGTVELALGADEISAWARVDDTGVGIDEADLPRVFDVAYRGSNSRVPRS 295 Query: 164 FTQIVDGN-VESTIDSHDIQFYYVILLAH 191 + + G+ + I + +Q + L AH Sbjct: 296 DSSLPSGSGLGLAIAAGLVQAHRGTLTAH 324 >gi|330878942|gb|EGH13091.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 459 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 20/206 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVDSL 80 I HD+ +PI + +ELLD+ D++++ + L F+R G Sbjct: 255 ISHDLNTPITELRLQMELLDDGPERDDMLESLDELRAMVRETLNFVR---GDAVQEATVE 311 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVAHASLPRGGKV 136 I L + + A + W G + R R + L NL +L G Sbjct: 312 ISLTALIDDLAKRYATMGTP-IGWRGASEIMCRCRPLALKRALTNLI---DNALKHAGDA 367 Query: 137 TISV-QDSKNENIFSLKINGNLARFP------EKFTQIV-DGNVESTIDSHDIQFYYVIL 188 T+S+ + + + +G E F Q+ G + Sbjct: 368 TVSLFKAPDGDIHLEVLDHGPGIEPAWLTQVFEPFVQLSQTGTDHPQGGGLGLGLAIARA 427 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + L E + L Sbjct: 428 CVQAHGGELTLENRPQAGLCAVVRLP 453 >gi|302187056|ref|ZP_07263729.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. syringae 642] Length = 697 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 331 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 388 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I V+ V ID + LLNL + Sbjct: 389 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 447 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++PRGG++TI + +E + + G I+ F+ Sbjct: 448 ARDAMPRGGRITIETANRWIDERGSQSRELIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 507 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 508 TTKPLGQGTGLGLS 521 >gi|289625965|ref|ZP_06458919.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869362|gb|EGH04071.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 394 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 77/209 (36%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +RV + + ++ R + +I L + ++ Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLVSNAIS 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185 G + + V ++F L + PE + I + Y Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDEPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIALAHGGTLEVCSTQEQGTVFTFRMP 390 >gi|206576541|ref|YP_002240551.1| sensor protein CreC [Klebsiella pneumoniae 342] gi|206565599|gb|ACI07375.1| sensor protein CreC [Klebsiella pneumoniae 342] Length = 474 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 72/209 (34%), Gaps = 29/209 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70 H++ SP+ AI + E+L E MQL+ + RL+ RL Sbjct: 265 HELKSPLAAIRGAAEILREGPPPAVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322 Query: 71 FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + + + Q + D K + + W + ++ + A+ L NL Sbjct: 323 I-----KPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181 A P+GG++ ++ + E S+ NG F + E S + Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +V +A + + + VV + Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466 >gi|162148050|ref|YP_001602511.1| histidine kinase, nitrogen regulation protein ntrB [Gluconacetobacter diazotrophicus PAl 5] gi|209542668|ref|YP_002274897.1| signal transduction histidine kinase, nitrogen specific, NtrB [Gluconacetobacter diazotrophicus PAl 5] gi|161786627|emb|CAP56209.1| putative histidine kinase, nitrogen regulation protein ntrB [Gluconacetobacter diazotrophicus PAl 5] gi|209530345|gb|ACI50282.1| signal transduction histidine kinase, nitrogen specific, NtrB [Gluconacetobacter diazotrophicus PAl 5] Length = 369 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQ-LIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H++ +P+ I + +LL+ E + + LIR + ++ R+ Sbjct: 141 MAAILAHEVKNPLSGIRGAAQLLESSVAEGDRELAVLIRDEADRIRDLVE--RMEMFSDK 198 Query: 76 SVDSL-----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAH 127 ++ L + + E A + R+ + + R ++LLNL A Sbjct: 199 PLERRPVNIHRVLERVRMLAEQGFAGNIRIVEDYDPSLPPVWGNRDQLVQVLLNLVKNAA 258 Query: 128 ASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDI 181 ++ +GG++T+ + + L + G R + + +I H Sbjct: 259 EAIASDGQGGEITL---GTSYRHGVRLAVPGMEHRVELPLVVSVRDTGPGIPDSIRPHLF 315 Query: 182 QFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + + + + L +IIDDH V+ Sbjct: 316 EPFLTTKTSGSGLGLALAGKIIDDHGGVIE 345 >gi|186475954|ref|YP_001857424.1| integral membrane sensor signal transduction histidine kinase [Burkholderia phymatum STM815] gi|184192413|gb|ACC70378.1| integral membrane sensor signal transduction histidine kinase [Burkholderia phymatum STM815] Length = 451 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE------VMQ-LIRLSSMSAIIRLKFMRLAFGYT 74 I HD+ +PI + ++LD+ M+ L+R + R G Sbjct: 251 ISHDLQTPITRMRLRADMLDDEAERGRLQKDLKEMELLVREGVA-------YARTLHGAD 303 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132 + IE ++ D+ RV ++ +R +A +IL NL +L Sbjct: 304 EKPVRVNPDALIESIVNDYADAGNRVTLAGRVGTAVTTRPQALRRILGNLV---DNALKY 360 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 G ++V+ S + L R P G + +D+ Q +Y Sbjct: 361 SGGDEVNVEVSVDGTAAPHWSIVVLDRGP--------GIPQEQLDA-VFQPFY 404 >gi|53722667|ref|YP_111652.1| two-component sensor kinase [Burkholderia pseudomallei K96243] gi|167820552|ref|ZP_02452232.1| probable two-component sensor kinase [Burkholderia pseudomallei 91] gi|167915670|ref|ZP_02502761.1| probable two-component sensor kinase [Burkholderia pseudomallei 112] gi|217422063|ref|ZP_03453566.1| sensor histidine kinase [Burkholderia pseudomallei 576] gi|52213081|emb|CAH39120.1| probable two-component sensor kinase [Burkholderia pseudomallei K96243] gi|217394294|gb|EEC34313.1| sensor histidine kinase [Burkholderia pseudomallei 576] Length = 389 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|23013521|ref|ZP_00053406.1| COG3852: Signal transduction histidine kinase, nitrogen specific [Magnetospirillum magnetotacticum MS-1] Length = 373 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 23/223 (10%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59 ++N ++S+M A+L H++ +P+ I + +LL++ ED+ + +LI + Sbjct: 137 SRNAARSVSAM--AAILA----HEVKNPLSGIRGAAQLLEQNAGEDDRVLTRLICDEADR 190 Query: 60 AIIRLKFMRL-AFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRV--QVSWTGEKIDL 111 + + R+ AF +V+ L + ++ E A R+ + + Sbjct: 191 IVALVD--RMEAFSDNPTVERSAVNIHRVLEHVRRISEAGFARSVRIIENYDPSLPPVLG 248 Query: 112 SRER-AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 R++ ++ LNL A ++P GG++ I ++ +L + P + + Sbjct: 249 DRDQLVQVFLNLVKNAAEAVPEEGGEI-ILSTGYQHGVRLALPGSETRRHLPLVVSIQDN 307 Query: 170 GN-VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 G + + + + + + L+ +II DH V+ Sbjct: 308 GPGIPEDLKPNLFDAFVTTKTSGSGLGLALVAKIIGDHGGVIE 350 >gi|237799890|ref|ZP_04588351.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806382|ref|ZP_04593086.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022745|gb|EGI02802.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027495|gb|EGI07550.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 468 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEPLQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +IE + D RV + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALIECLVEPWLYPEGDGRVTQHGEALAAYSGKPLALKRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+DS I + G PE+ + V + Q Sbjct: 375 ---DNALKYGHRAHLKVEDSAQAFILHVDDEGPG--VPEQRLEHVF-EPHFRLAGSQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|213968362|ref|ZP_03396506.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] gi|213927000|gb|EEB60551.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] Length = 458 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ + + ++L+ A+ +K Sbjct: 256 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 306 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + D RV + + A + + NL Sbjct: 307 --DTDIHENIEPVDLNALLECLVEPWLTADGDGRVTQQGEAQAAYPGKPLALMRCIGNLI 364 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 365 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 418 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 419 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 455 >gi|167907309|ref|ZP_02494514.1| probable two-component sensor kinase [Burkholderia pseudomallei NCTC 13177] Length = 389 Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94 D + ++ LI S A R++ R+ F GS + + + + + + + Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249 Query: 95 AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 + + + + +L ++++NL M A ++ G +TI + + Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309 Query: 149 FSLKING 155 +++ G Sbjct: 310 IAIEDTG 316 >gi|227818495|ref|YP_002822466.1| osmolarity sensor protein EnvZ [Sinorhizobium fredii NGR234] gi|227337494|gb|ACP21713.1| osmolarity sensor protein EnvZ [Sinorhizobium fredii NGR234] Length = 440 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 10/201 (4%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + E+ ++ +D+++Q + + + R A G + + Sbjct: 243 ISHDLQTPITRMKLRAEMAEDSVDKDKLVQDLGEVERLVKEGVAYARSAHGKEENASRVD 302 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139 IE + D+ K V + + ++R A ++L NL +L G I Sbjct: 303 LASFIESLACDYQDTGKAVTIGELSDGAIVTRPHALRRVLTNLI---DNALKFAGGAEIE 359 Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENK 194 VQ + ++ G + + ++ + + + LA Sbjct: 360 VQRHDGTVLITVLDRGPGIPDGQLQAVLQPFFRLEQSRNRDTGGTGLGLAIALQLATAIG 419 Query: 195 IRLLPEIIDDHNVVLSALLEK 215 L D + L + Sbjct: 420 ATLTLRNRDGGGLAAEIALRQ 440 >gi|302186957|ref|ZP_07263630.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642] Length = 468 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + + RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + Q Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGSQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|220908950|ref|YP_002484261.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865561|gb|ACL45900.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1432 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 22/141 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70 L S + HD+ + + I S +LL + G E++++I ++ ++ F R Sbjct: 1073 LASGMAHDLNNMLTPILASSQLLQKQFPEGRSQEILKIIEANARRGADLIRQVLTFAR-- 1130 Query: 71 FGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLN 121 G+ I L +I+Q+ E + + + + ++L+N Sbjct: 1131 ----GTEGKRIPLQVKHLLTEIQQICERTFPKSITIVLDVVSTLSTILADPTQLHQVLMN 1186 Query: 122 LFMVAHASLPRGGKVTISVQD 142 L + A ++ GG++ + ++D Sbjct: 1187 LCVNARDAMSVGGQLQLRLED 1207 >gi|87200631|ref|YP_497888.1| periplasmic sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87136312|gb|ABD27054.1| periplasmic sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 436 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 10/164 (6%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + I +++ + ++L I HD+ +P+ + LE + M + Sbjct: 218 MQQRIHRSMTD-RMQSMLA--IGHDLRTPLARMQLRLENAGLDAQTRDEMAVDLGEMRHM 274 Query: 61 IIRLKFMRLAF---GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117 + L+ AF G + + + + Q + D A + R E +++ Sbjct: 275 LESLQ----AFVESGGSRLPAERVDVAVMAQTLVDTAADEGRDAYFHGLESLEIMARPVS 330 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 + L + +L G V ++V+ + + +G Sbjct: 331 LRRALSNLLENALHYAGNVHVTVRRDGDMAEIVFEDDGPGIPED 374 >gi|262044957|ref|ZP_06017999.1| sensor histidine kinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037684|gb|EEW38913.1| sensor histidine kinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 474 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 29/209 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70 H++ SP+ AI + E+L E + MQL+ + RL+ RL Sbjct: 265 HELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322 Query: 71 FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124 + + + Q + + K + + W + ++ + A+ L NL Sbjct: 323 I-----KQQPVSIDALYQRLTEERNIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181 A P+GG++ ++ + E S+ NG F + E S + Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 +V +A + + + VV + Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466 >gi|153006422|ref|YP_001380747.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029995|gb|ABS27763.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 516 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 26/210 (12%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGS 76 H+I +P+G I +L+ + + E ++LI+ ++M A L+F R Sbjct: 308 HEINNPLGGILAFAQLMSREERTPADLESLKLIQDAAMRAKRIVESLLRFSR------RP 361 Query: 77 VDSLIGLGDIEQVIEDFI------AVDKRVQV--SWTGEKIDLSRERAKILL-NLFMVAH 127 + G D+ QV ED + D R++V + + + + + NL + A Sbjct: 362 RNEEKGPVDVAQVAEDALFLLRPQMKDGRIEVVRDYRAATALGNANQLQQIFVNLVVNAI 421 Query: 128 ASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 ++ G++T++V + S+ G R PE +I + + + Sbjct: 422 QAMAGAGRLTVAVGPAAAGRVRASVADTGPGVR-PEIAKRIFEPFFTTKPEGKGTGLGLS 480 Query: 187 IL--LAHENKIRLLPEIIDDHNVVLSALLE 214 I +A ++ + E + L Sbjct: 481 ICYQIAEDHGGSIRVEPGPEGGACFVVDLP 510 >gi|94970127|ref|YP_592175.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552177|gb|ABF42101.1| periplasmic sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 476 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 20/208 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF----MRLAFGYTGSVDS 79 HD+ SP+ +I LE+ G + + + + +F + LA G++ Sbjct: 265 HDMKSPVTSIRGKLEVALLEGSAADWREPVAEAVEGLDRLSQFINTTLDLAEAEAGALPL 324 Query: 80 LIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHAS 129 D ++E F+ + QV + ++L NL A Sbjct: 325 RKEPVDFGALVEQFVDIYTPAFHENHHQVHVQIHEPVTVDVDVSLTNRMLSNLLDNEMAH 384 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYV 186 LP G K+ I V + + ++ +G F + V G H + +V Sbjct: 385 LPPGCKIDIEVMAREQQAELVIRDDGPGFPAELKAHAFERFVKGKESK---GHGLGLAFV 441 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + E + L+ Sbjct: 442 DAVVQAHGGNVEIEDTPGGGATIRILMP 469 >gi|254512491|ref|ZP_05124558.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221536202|gb|EEE39190.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 763 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 17/132 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79 HD + + AI +LL +++ + I ++ A + + LAF + Sbjct: 402 HDFNNLLTAISGHCDLLLLRHDQNDPNYGDLVQINQNANRAAALVSQL-LAF--SRKQTL 458 Query: 80 LIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHAS 129 + D+ I D I V ++V+++ + + + R+ ++L+NL + A + Sbjct: 459 RPEVLDLRDTISDLIHLLNRLVGEKVRLTLSHDPVLKPVCADKRQLEQVLMNLVVNARDA 518 Query: 130 LPRGGKVTISVQ 141 +P GG++ I + Sbjct: 519 MPEGGEIRIETE 530 >gi|94494936|ref|ZP_01301517.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] gi|94425202|gb|EAT10222.1| sensory box histidine kinase/response regulator [Sphingomonas sp. SKA58] Length = 996 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 35/226 (15%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + + SL+LL G +D + + I + SA L LAF S Sbjct: 629 IAHDFNNMLTGVIGSLDLLQRHLAAGRQDRIDRYIDTAMTSAQRAASLTQRLLAFSRRQS 688 Query: 77 VD-SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID----LSRERAK-ILLNLFMVAHA 128 +D + + +GD+ +ED + D+ +++ + + + LLNL + A Sbjct: 689 LDVTAVNVGDLVTGMEDMLRRTMDENIRLEVHLPEATWLAKTDHNQLESALLNLAINARD 748 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDSHDIQFY 184 ++P GG +TI+ +++ + L + A + F +I + + + + Sbjct: 749 AMPHGGTLTIAARNTPSNEATGLDADDMQA---DDFVEISVSDTGTGMSEDVLAKAFDPF 805 Query: 185 YVIL---------------LAHENKIRLLPEIIDDHNVVLSALLEK 215 + A ++ ++ + + LL + Sbjct: 806 FTTKPIGAGTGLGLSMVYGFARQSGGQVHITSAPEEGTTIRLLLPR 851 >gi|289673820|ref|ZP_06494710.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 440 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 77 IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 136 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 137 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 194 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P GG + + + + + F+ Sbjct: 195 RDAMPDGGTLVVETSNQQLDRSFT 218 >gi|148263858|ref|YP_001230564.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397358|gb|ABQ25991.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 528 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 81/201 (40%), Gaps = 19/201 (9%) Query: 17 LLCSRICHDIISPIGAIH--NSL--ELLDEVGIEDEVMQLIRLSS----MSAIIRLKFMR 68 LL + + H+I +P+ AI + + L + I+ + ++ I S L + R Sbjct: 273 LLAAGMAHEIGTPLSAIIGYAGILRDELQDDAIKADYLRRIEAESGRIDRIVRGLLDYAR 332 Query: 69 LA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILLN 121 +G + + L + V++ + + ++ + + ++L+N Sbjct: 333 PTDVHCELMDISGLLTETVDLLGAQGVLKQITTS---LILDDNLPRVFVDPHQLQQVLIN 389 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 L + A ++ +GG++ ++ + K E +F + ++ + S ++S D+ Sbjct: 390 LIINARDAIKQGGELEVAARAGKAEMLFVQSTSAPVSVMGRRKDDFHGAFSYSYLNSRDV 449 Query: 182 QFYYVILLAHENKIRLLPEII 202 ++ + +N + E + Sbjct: 450 -ACWLAIAVRDNGEGIAAENL 469 >gi|23014493|ref|ZP_00054306.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 495 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 15/202 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + E +++ +++ + L F R + Sbjct: 296 ISHDLKTPITRLRLRAEFMEDDDQRAKMLCDLEEMEAMIASTLAFARD--DAAREPSIRL 353 Query: 82 GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 L I+ ++ED + R + +R A + L NL ++ GG + Sbjct: 354 DLAAMIQGMVEDMEELGGRCSYDGPQSLVLDARPVALKRALANLM---DNAVKYGGSAAL 410 Query: 139 SVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 S+ + +++ G R F ++ T + Sbjct: 411 SLTSLGQDARITIEDQGPGIPEEARERVFAPFVRLETSRSRET-GGTGLGLAVARAAIRA 469 Query: 193 NKIRLLPEIIDDHNVVLSALLE 214 + + + ++ L Sbjct: 470 HGGDITLGDRPGGGLRVTVTLP 491 >gi|144899690|emb|CAM76554.1| osmolarity sensor protein [Magnetospirillum gryphiswaldense MSR-1] Length = 441 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 9/142 (6%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 + HD+ +P+ + L +L EV E+ + + L F+R G G + Sbjct: 246 VSHDLRTPLTRMKLQLAMLGEVDGRAELEEDVAEMEQMVEGYLAFVR---GEGGEATTPT 302 Query: 82 GLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI 138 L + + + R + V + + A+++ NL + GG V + Sbjct: 303 DLAALVDEVVSRYRREGRELDLHVEDSLVMPLKPQAMARVISNLI---GNAHRYGGHVWV 359 Query: 139 SVQDSKNENIFSLKINGNLARF 160 V + +G Sbjct: 360 RVGKRAEAAEIIVDDDGPGIPV 381 >gi|148557324|ref|YP_001264906.1| GAF sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148502514|gb|ABQ70768.1| GAF sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 571 Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 17/151 (11%) Query: 24 HDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA-IIRLKFMRL-AFGY-TGSVDS 79 HD + + I SL+L L + +++ V++ ++++ +A RL RL AF S Sbjct: 219 HDFNNLLTPIVGSLDLILSGMPLDERVLRTVKVAMDAADRARLLVDRLLAFARRQPLAPS 278 Query: 80 LIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAK--------ILLNLFMVAHAS 129 + L + + + D + ++ R+ ++ E + LLNL + A + Sbjct: 279 PVDLRGLIESMRDLLVTSLGVRIALAIDVEADL---PAVRGDRHQLEMALLNLTVNARDA 335 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF 160 +P GG ++IS + + + S G+ R Sbjct: 336 MPDGGILSISARRAPAAGLPSNLAKGDYVRI 366 >gi|170748607|ref|YP_001754867.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655129|gb|ACB24184.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 628 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 30/219 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + AI SLEL + +Q + ++ A R L F R Sbjct: 273 IAHDFNNLLTAILGSLELAGPKVADQPRVQRLIENARGAAERGASLTKRLLSFSR----A 328 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKI-LLNLFMVA 126 + + + + D R + + + ++ ++ +LNL + A Sbjct: 329 HDLQARPVDVNTLITGMSDLFGRSLGGLVTVRTDLEDGLPAVQVDPDQLELAVLNLCINA 388 Query: 127 HASLPRGGKVTISVQ--------DSKNENIFSLKINGNLARFPEKFTQIVDG---NVEST 175 ++P GG +T++ + + + + + PE+ + V ++ Sbjct: 389 RDAMPDGGAITVATRRLAISGDPEIADGPYLGISVTDEGTGIPEEILRRVCEPFFTTKAV 448 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V LA ++K RL+ + + + L Sbjct: 449 GQGTGLGLAMVFGLAQQSKGRLVIDSVVGRGTRVELALP 487 >gi|220925979|ref|YP_002501281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950586|gb|ACL60978.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 673 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 14/141 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGYTGSVDS 79 I HD + + I +LE+L+ E ++L++ + +A +L LAFG Sbjct: 305 IAHDFNNLLTVILGNLEMLEAQIREPRQLELVKEARETAEHGAQLTERLLAFG--RRQPL 362 Query: 80 LIGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKI--------LLNLFMVAHAS 129 L D+ Q+ D + +R + ++D + ++ +LNL + A + Sbjct: 363 RPRLTDVGQLFADLTPILRRTLGETIQVKARLDADLWKVRVDASQLQNAILNLAINARDA 422 Query: 130 LPRGGKVTISVQDSKNENIFS 150 +P GG++T++ +++ + ++ Sbjct: 423 MPNGGRLTLAAENTHIDAEYA 443 >gi|330873058|gb|EGH07207.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 468 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ + + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + D RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLTADRDGRVTQLGEAQAAYPGKPLALMRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 584 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 20/215 (9%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL-IRLSSMSAIIRLKFMRLA 70 S + H++ +P+ ++ +E L E +ED M++ I + L+ R+ Sbjct: 367 SNVSHELRTPLASLKALVETLQEGALEDPPAAQRFLRQMEIEIDNLTQMVRELLELSRIE 426 Query: 71 FGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG------EKIDLSRERA-KILLNL 122 G + +I + E +R ++ ++ ER ++L+NL Sbjct: 427 SGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVLVNL 486 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSH 179 A P GG++T+ V+ F ++ G + F + + + + Sbjct: 487 THNAVKFTPPGGEITLGVKQEGQAICFWVRDTGVGIPPEDLERIFERFYKTDRSRSGEGT 546 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E L Sbjct: 547 GLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLP 581 >gi|119386150|ref|YP_917205.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119376745|gb|ABL71509.1| histidine kinase [Paracoccus denitrificans PD1222] Length = 419 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 61/153 (39%), Gaps = 15/153 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 HD+ +P+ + E +++ E + +I S+ ++ +R G G Sbjct: 219 HDLRTPMTRMRLRAEFIEDDAERAKWLSDLEELDMIADSA------IRLVREEVGLDGGE 272 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137 + + Q+ + A+D++V++ + A ++A+A+ GG Sbjct: 273 PIRLDRL-LRQIALELHALDQKVELGALPPLTVHAGPIALKRALRNLIANAAT-HGGGAR 330 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +++ ++ + ++ +G PE QI + Sbjct: 331 VALAREGDDAVIRIEDDGPGV-PPELLAQIFEP 362 >gi|291521397|emb|CBK79690.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 343 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 22/234 (9%) Query: 1 MAKNIC-FNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58 M +N + +L L+ S I H + +P+ + + + LL++ E E IR Sbjct: 110 MQENRRRVDEERQELQTLV-SDISHQVKTPVSNLKMATDTLLEKPMTEAERTDFIR-GIR 167 Query: 59 SAIIRLKFM--------RLAFGYTGSVDSLIGLGD-IEQVIED--FIAVDKRVQVSWTGE 107 + +L F+ RL G + L D + Q + + A K++ VS Sbjct: 168 TQTDKLDFLFQALVKTSRLETGVIQLNKKPVCLFDTVAQAMSGIVYAAEKKKIAVSVDCP 227 Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161 + S+ ++ L NL A P GGK+T+SV + + G Sbjct: 228 ENLTFSHDSKWTSEALFNLLDNAVKYTPAGGKITVSVIPWEMYVEIKVADTGKGISESNQ 287 Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F + I Y + + S +L Sbjct: 288 AAIFRRFYREEEVHEQQGVGIGLYLTREIVTRQGGYIKVVSEPGKGSEFSIMLP 341 >gi|289647966|ref|ZP_06479309.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str. 2250] Length = 394 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 77/209 (36%), Gaps = 19/209 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ +Q+++ S A L F R G+ G Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131 S+ +++ +E ++ +RV + + ++ R + +I L + ++ Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLVSNAIS 301 Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185 G + + V ++F L + PE + I + Y Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDEPQAGLGLGLYI 361 Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214 +A + L + V + + Sbjct: 362 ASEIALAHGGTLEVCSTQEQGTVFTFRMP 390 >gi|197103421|ref|YP_002128799.1| histidine kinas/response regulator(phosphate acceptor regulatory protein) [Phenylobacterium zucineum HLK1] gi|196480697|gb|ACG80224.1| histidine kinas/response regulator(phosphate acceptor regulatory protein) [Phenylobacterium zucineum HLK1] Length = 639 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 27/180 (15%) Query: 24 HDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMSAIIRLKFMRLAFGYTGSVD- 78 HD + + I L++L + +L+ S+ A ++ + LAF Sbjct: 285 HDFNNLLMPILGGLDILQRSSRLSPRERKLLDGAIQSAERAKALVQRL-LAF--ARRQPL 341 Query: 79 --SLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKI------LLNLFMVAHAS 129 + + Q + + I Q+S + + L +LNL + A + Sbjct: 342 QAGPVDVAAAIQAMGELIGSTTGPQISVSIDTPPILPPAHVDANQLEMAILNLAVNARDA 401 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----SHDIQFYY 185 +P GG + +S + P + I + +D + ++ ++ Sbjct: 402 MPTGGTLRLSATAEWVDAGHR------AGLAPGHYVCISVSDTGEGMDEATRARAVEPFF 455 >gi|172058457|ref|YP_001814917.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171990978|gb|ACB61900.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 421 Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 14/152 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM--------RLAFGY 73 I HD+ +P+ I N E L I + + + S + RL + +LA G Sbjct: 219 ITHDLRTPLAIIRNETEALAAGVIPVDELPDVTSSIIEETDRLGLLIDETLVYSKLAGGM 278 Query: 74 TGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNLFMVAH 127 + + L E++ F R+ V ++ L R ++L+N + A Sbjct: 279 MPLDRTEVALDQLVEETAERLQSTFQKDGLRLTVETVPVRLSLDRRMFERVLVNFLVNAQ 338 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + P G +V + + ++ + AR Sbjct: 339 VAAPVGSEVLVRLTATELTVEDAGNGVAENAR 370 >gi|149925133|ref|ZP_01913440.1| PAS/PAC sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149813996|gb|EDM73634.1| PAS/PAC sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 584 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 14/152 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF-MR-- 68 A L + HD + + I + ELL+ E DEV+ + ++A + F R Sbjct: 225 AALAGGLAHDFNNTLMVIMSWAELLEVELGEASQGDEVLSEATSAVVTAAEQASFLARQL 284 Query: 69 LAFGYTG-SVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDLSRERA--KILLN 121 L+ G G S + + + + + + V++ L+ +I+LN Sbjct: 285 LSLGRQGTSTPEPVDVRGVMGLAVTSLRKLLPANIEVRLEAEAVDAVLAEPAQLQQIILN 344 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 L + A ++P GG+++ V+ +++N + I Sbjct: 345 LAINARDAMPEGGRLSFGVRQERDDNGATWVI 376 >gi|115374243|ref|ZP_01461529.1| sensor protein ZraS, putative [Stigmatella aurantiaca DW4/3-1] gi|115368786|gb|EAU67735.1| sensor protein ZraS, putative [Stigmatella aurantiaca DW4/3-1] Length = 432 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 74/204 (36%), Gaps = 12/204 (5%) Query: 22 ICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTGSV 77 I H++ +P+G+I L L D G E MQ++R L +F+ + Sbjct: 206 IAHELKNPLGSIK-GLAALVSKDVEGKSAERMQVLRQEINRMQDILDEFLNFSRPLGPLT 264 Query: 78 DSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASL 130 + L ++ + ++ + +A ++R+ + + R+ ++L+NL A + Sbjct: 265 QEQVSLRELCENVLMLHEGVAAERRLTLRLHPGPEIAACCDARKVKQVLINLLQNALDAS 324 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 P G +V I V + + ++ E ++ V + + LA Sbjct: 325 PPGQEVCIEVAPLGSTQVRVSVLDRGPGLTGESVERLFQAGVTTKPQGSGLGLPIARSLA 384 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ L + L Sbjct: 385 RQHGGDLSLHPREGGGCHAMMALP 408 >gi|330982192|gb|EGH80295.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 380 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 17 IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 76 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 77 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 134 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P GG + + + + + F+ Sbjct: 135 RDAMPDGGTLVVETSNQQLDRSFT 158 >gi|310818046|ref|YP_003950404.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391118|gb|ADO68577.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 457 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 74/204 (36%), Gaps = 12/204 (5%) Query: 22 ICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTGSV 77 I H++ +P+G+I L L D G E MQ++R L +F+ + Sbjct: 231 IAHELKNPLGSIK-GLAALVSKDVEGKSAERMQVLRQEINRMQDILDEFLNFSRPLGPLT 289 Query: 78 DSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASL 130 + L ++ + ++ + +A ++R+ + + R+ ++L+NL A + Sbjct: 290 QEQVSLRELCENVLMLHEGVAAERRLTLRLHPGPEIAACCDARKVKQVLINLLQNALDAS 349 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 P G +V I V + + ++ E ++ V + + LA Sbjct: 350 PPGQEVCIEVAPLGSTQVRVSVLDRGPGLTGESVERLFQAGVTTKPQGSGLGLPIARSLA 409 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ L + L Sbjct: 410 RQHGGDLSLHPREGGGCHAMMALP 433 >gi|320108037|ref|YP_004183627.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319926558|gb|ADV83633.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 363 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 27/194 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-------SMSAIIRLKFMRLA 70 L + I H+I +P+ A+ + L L+ E + + I + + A L+F + Sbjct: 144 LAASIAHEIRNPVDAVMSLLYLIRSESSETKRSEYIEQAEGELSRVAEIATNTLRFYQDP 203 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDL---SRERAK-ILLNLF 123 G T L D+ + + RV+V + + + ++ NL Sbjct: 204 AGLT-----TFDLADLADTVLNLFRGRISTSRVKVQAELPRGVFVSAPQGELRQVVANLV 258 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 A ++P GG++ + ++ N R G + + + Sbjct: 259 GNALDAMPTGGRLILRIRKFVNSRTGK-----QCVRL--TVADTGIGMSPE-VLARVFEA 310 Query: 184 YYVILLAHENKIRL 197 +Y A N + L Sbjct: 311 FYTTKGAAGNGLGL 324 >gi|124515361|gb|EAY56871.1| Multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] gi|206601662|gb|EDZ38145.1| Multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 660 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-----ILLNLFMVAHASLPRGGKVT 137 L ++ +++ + + R++ S GEK S E A+ + LNL M ++P+GGK++ Sbjct: 513 LMEVRSLLQQTL-LKARIRFSLEGEKGLPSVEGARGPLHQVFLNLMMNGIEAMPKGGKLS 571 Query: 138 ISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHEN 193 + + + N ++ I + PE + + + + I I + + Sbjct: 572 VRLSAMPLQERNGIAVTIEDSGKGIPETLIKKLHDPFFTHGKARGIGLGLTITRDIVDRH 631 Query: 194 KIRLLPEIIDDHNVVLSALLE 214 RL E I V + Sbjct: 632 AGRLTIENIQTGGVRAVVWIP 652 >gi|15965555|ref|NP_385908.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|307302675|ref|ZP_07582431.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|15074736|emb|CAC46381.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|306903039|gb|EFN33630.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 869 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 25/192 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56 MA+ N L I HD + + AI S + LL + L I+ + Sbjct: 471 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 525 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106 + A + ++ + LAF ++ + +GD+ +++ + +V+V W Sbjct: 526 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 584 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + E+ LLNL + A ++P GG +T+ ++ + G E F Sbjct: 585 KTDLGQFEQV--LLNLAVNARDAMPAGGIITLRTRN---LPASEVAALGRRELPEEDFVM 639 Query: 167 IVDGNVESTIDS 178 + + + I Sbjct: 640 VEVSDQGTGIPP 651 >gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 593 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 35/217 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----------- 65 + H++ +P+ +I E L + + D + +I S ++ Sbjct: 370 VSHELKTPVTSIKGFSETLLDGAMADPAYMEKFLTIIHKESERLQSLIQDLLELSKLEQH 429 Query: 66 FMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 + RL +G +V+ L + +++ A V++ E++ ++ Sbjct: 430 YFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASS-VEMDGDSERLK------QV 482 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVEST 175 +NL A P G++ +SV +F++ NG + P F + + + Sbjct: 483 AINLISNAITYTPNHGEINVSVTQDHQSILFTVSDNGIGIESSELPRIFERFYRVDRARS 542 Query: 176 IDSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLS 210 +S I L + +L E H + Sbjct: 543 RNSGGTGLGLAIVKHLVEAHNGKLSVESELGHGTTFT 579 >gi|323699934|ref|ZP_08111846.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459866|gb|EGB15731.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 745 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 27/215 (12%) Query: 24 HDIISPI-GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYT 74 HD+ SP+ G I LL+ + ++ L+RL S R L ++ G Sbjct: 534 HDLKSPLNGIIGIPQLLLEGGNLTEQQEMLVRL-VESTGYRILRMVDHSLDLFKMETGVY 592 Query: 75 GSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKI-DLSRERAK--------ILLNL 122 V + + + + V+ D +A + V + + E+ D R + +L NL Sbjct: 593 EYVPAEVDVAKVMRTVLNDHAGLARARGVTLDMSTERAEDGPECRIRSDKDLLYHMLSNL 652 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDI 181 A + P GG V++ ++ ++I A + + + Sbjct: 653 IANAVDASPDGGTVSVRLEG---VPCRVIRIRNRGAVPAAIRGRFFEKYKTWGKKHGTGL 709 Query: 182 QFYYVILLAHENKIRLLPEIIDDHN-VVLSALLEK 215 Y L+A L + D+ + +S LL + Sbjct: 710 GTYSSKLMADVMGYGLHLDTSDEADKTTISILLPE 744 >gi|329849810|ref|ZP_08264656.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] gi|328841721|gb|EGF91291.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] Length = 501 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 27/200 (13%) Query: 22 ICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----YT 74 I HD+ SP+ + + LE L+D + + + + L+ + F Sbjct: 282 IAHDLRSPLSRLRSKLEVSLIDVDKDPSQAREALAKALDETDQLLRTFQTVFAISRLQAA 341 Query: 75 GSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEK---IDLSRER-AKILLNLFM 124 G + + D + +D +A DK ++ + E+ +R+ A+ L NL Sbjct: 342 GGAPDQV-IFDATALADDMAELYELVAADKGLEFEFEIERDVKALGNRDFLAQALANLLD 400 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDS 178 A P GG + S+ E FS+ G + R E+F ++ T+ Sbjct: 401 NAVKYTPEGGITLRLRRTSQREVEFSITDTGPGVPEKDRGRIAERFVRL---ENSRTLPG 457 Query: 179 HDIQFYYVILLAHENKIRLL 198 + V +A +K RL Sbjct: 458 VGLGLSMVEAVAVAHKGRLD 477 >gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 495 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 17/161 (10%) Query: 18 LCSRICHDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSS---MSAIIRLK-FMR 68 L + I HD+ +P+ AI + +++ + E Q I + L+ Sbjct: 264 LLANIAHDLATPLTAIQGFSEALADDMIQDPAARQETAQRIGREVQRLRRMVADLQQMTS 323 Query: 69 LAFGYTGSVDSLIGLGDI----EQVIEDFIAVDKRV---QVSWTGEKIDLSRERA-KILL 120 L G T + + L ++ VIE V + + +R ++LL Sbjct: 324 LESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRDDVPLVQADSDRVTQVLL 383 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 NL A P GG +T+ ++ + I Sbjct: 384 NLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGID 424 >gi|289678812|ref|ZP_06499702.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. syringae FF5] Length = 539 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 319 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 376 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I V+ V ID + LLNL + Sbjct: 377 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 435 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++PRGG++TI + +E + + G I+ F+ Sbjct: 436 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 495 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 496 TTKPLGQGTGLGLS 509 >gi|163741068|ref|ZP_02148460.1| sensory box sensor histidine kianse/response regulator [Phaeobacter gallaeciensis 2.10] gi|161385421|gb|EDQ09798.1| sensory box sensor histidine kianse/response regulator [Phaeobacter gallaeciensis 2.10] Length = 741 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 23/194 (11%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78 HD + + AI +LL D+ + + I ++ A + + LAF Sbjct: 377 HDFNNLLTAISGHCDLLLLRHDQGDQDFGDLIQIHENANRAAALVSQL-LAFSRKQTLQP 435 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 ++ + D + + ++V ++ + + + S R+ ++L+NL + A ++P Sbjct: 436 EVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMP 495 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQ-----FYY 185 +GG++ I + + N A P + + + I +Q FY Sbjct: 496 QGGEIRI----ETEAVVLDQPLERNRAVVPAGDWVTVKVSDEGVGISPDKLQKVFEPFYT 551 Query: 186 VILLAHENKIRLLP 199 + L Sbjct: 552 TKRTGEGTGLGLST 565 >gi|197123429|ref|YP_002135380.1| histidine kinase [Anaeromyxobacter sp. K] gi|196173278|gb|ACG74251.1| histidine kinase [Anaeromyxobacter sp. K] Length = 512 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 17/155 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAI----IRLKFMRLAFGYTGSVD 78 H++ +P+GAI +L+++D G + + ++R S L R+ G + Sbjct: 161 HELRNPLGAIILALDVIDRRGAAEPRQLDVVRRQSRQLSRLVDDLLDVSRVTSGKIALHN 220 Query: 79 SLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 + L + Q + R +V ++ L+ + ++ + + ++ Sbjct: 221 HRVELAGLVSRAVEAMQPSAAAAGISLRAEV--APGEVPLAGDPVRLEQVVANLVGNAVK 278 Query: 132 R---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 GG V ++++ S +E + + +G P+ Sbjct: 279 YNRPGGHVVVALETSGDEAVLRVHDDGIGLAEPDL 313 >gi|126737807|ref|ZP_01753537.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. SK209-2-6] gi|126721200|gb|EBA17904.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. SK209-2-6] Length = 769 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 15/131 (11%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77 HD + + AI +LL + G +D LI+ ++ A + + LAF + Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAAALVSQL-LAFSRKQTLL 464 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130 ++ + D + + ++V ++ + + + S R+ ++L+NL + A ++ Sbjct: 465 PEVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 524 Query: 131 PRGGKVTISVQ 141 P GG++ + + Sbjct: 525 PNGGEIRVRTE 535 >gi|89068276|ref|ZP_01155686.1| sensory box sensor histidine kianse/response regulator [Oceanicola granulosus HTCC2516] gi|89046193|gb|EAR52251.1| sensory box sensor histidine kianse/response regulator [Oceanicola granulosus HTCC2516] Length = 758 Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 19/134 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 393 HDFNNLLTAISGHCDLLLLRHDQGDPDFGDLTQIHQNANRAAALVGQLLAFSR----KQN 448 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + L D + + +++ ++ + + R+ ++L+NL + A Sbjct: 449 MRPERLDLRDTLADLTHLLNRLVGEKIALTLAHDPALKAIRADKRQIEQVLMNLVVNARD 508 Query: 129 SLPRGGKVTISVQD 142 ++P GG++ I ++ Sbjct: 509 AMPEGGEIRIETEN 522 >gi|294677286|ref|YP_003577901.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] gi|294476106|gb|ADE85494.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] Length = 767 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 19/134 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 399 HDFNNLLTAISGHCDLLMLRHDKGDPDYTDLDQISQNANRAASLVGQLLAFSR----KQT 454 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 +I L D + + ++V ++ T + R+ ++++NL + A Sbjct: 455 LKPRIIDLRDTLSDLTHLLNRLTGEKVVLTLTHDPNLAPIRADKRQLEQVIMNLVVNARD 514 Query: 129 SLPRGGKVTISVQD 142 ++P GG++ I ++ Sbjct: 515 AMPGGGEIRIETEN 528 >gi|85703672|ref|ZP_01034776.1| ATP-binding region, ATPase-like:Histidine kinase, HAMPregion:Histidine kinase A, N-terminal [Roseovarius sp. 217] gi|85672600|gb|EAQ27457.1| ATP-binding region, ATPase-like:Histidine kinase, HAMPregion:Histidine kinase A, N-terminal [Roseovarius sp. 217] Length = 654 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 27/173 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAII----RLKFMR 68 + + + H+I +P I +L+++ + + LI L+F R Sbjct: 435 ITAGVAHEINNPAAVIQGNLDVIRQTLGAGSLPVITELDLIDRQVGRISAIVGKLLQFAR 494 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDL---SRERAK 117 G + +I V+ D + V + + + E + Sbjct: 495 -----PGEFGTFEEDVEIASVLRDCLVLVDHVVAKAGVTVVIDAQPDTPLVRINPGELQQ 549 Query: 118 ILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168 +++NL A ++ GG++ ++ + + +L + + PE +V Sbjct: 550 VIINLVTNAAQAMKTGGRLAVTTHAESREGHPGAALIVADSGPGIPEDKLALV 602 >gi|91974766|ref|YP_567425.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91681222|gb|ABE37524.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1105 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 11/129 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80 I HD + + I +++++ + + + I A R + RL + Sbjct: 712 IAHDFNNMLTVITGTIDIISDGVADQPHLATIAKLISEAADRGAELTRLLLAFARKQPLR 771 Query: 81 IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLS--RERAKI---LLNLFMVAHASL 130 D+ ++ + +++++ + + +R ++ L+NL + A ++ Sbjct: 772 PDETDVNALVAGLQSLLRPTLGEQIEIETSFDDGAWPIYVDRGQLESALVNLAVNARDAM 831 Query: 131 PRGGKVTIS 139 P GGK+TI Sbjct: 832 PNGGKLTIE 840 >gi|323528025|ref|YP_004230177.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia sp. CCGE1001] gi|323385027|gb|ADX57117.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia sp. CCGE1001] Length = 374 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 17/216 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67 +L + + HD+ +P+GA+ S E L + + + ++ +R L Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADQQS-ATVAARVKNSSLRMARMVDQLLNLA 206 Query: 68 RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125 RL G I L + VI++F + + ++ +T ++ + Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKRIVFTSRGHTAGAWDTDLVWQAVSNL 266 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSH 179 +L G +SV N P + + + + + Sbjct: 267 VSNALHHGAAGDVSVHVDGEAEDCVRLTVANRGVIPPEVVPHLFKAFGPNNGGSRSREGL 326 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V +A + R+ + + V + L + Sbjct: 327 GLGLHIVHEIARMHGGRVDVKSDESDGTVFTIELPR 362 >gi|330900711|gb|EGH32130.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 637 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 273 IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 332 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 333 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 390 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P GG + + + + + F+ Sbjct: 391 RDAMPDGGTLVVETSNQRLDRSFT 414 >gi|307318523|ref|ZP_07597957.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306895863|gb|EFN26615.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 869 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 25/192 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56 MA+ N L I HD + + AI S + LL + L I+ + Sbjct: 471 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 525 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106 + A + ++ + LAF ++ + +GD+ +++ + +V+V W Sbjct: 526 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 584 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 + E+ LLNL + A ++P GG +T+ ++ + G E F Sbjct: 585 KTDLGQFEQV--LLNLAVNARDAMPAGGIITLRTRN---LPASEVAALGRRELPEEDFVM 639 Query: 167 IVDGNVESTIDS 178 + + + I Sbjct: 640 VEVSDQGTGIPP 651 >gi|289207236|ref|YP_003459302.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thioalkalivibrio sp. K90mix] gi|288942867|gb|ADC70566.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thioalkalivibrio sp. K90mix] Length = 365 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 28/167 (16%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFM--RLAFGYTG 75 + H+I +P+G + + +LL D+ G+++ +IR RL+ + R+ G Sbjct: 146 LAHEIKNPLGGLRGAAQLLASELDDDGLKEYTGIIIRE-----ADRLRSLVDRM-LGPNN 199 Query: 76 SVD-SLIGLGDIEQVIEDFIAV----DKRVQVSWTGEKIDLSRER---AKILLNLFMVAH 127 + L ++ + + ++V +++ + D+ +R + +LNL A Sbjct: 200 LPRLEAVNLHEVLEHVRGLVSVQLPLGLKIRGDYDPSIPDVQADRDMLVQAILNLVQNAV 259 Query: 128 ASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPEKFTQ 166 +L GG++T+ ++ ++ + L + N PE+ + Sbjct: 260 QALSEGGEITLVSRVLRQYTISGHRHRLVARLSVRDNGPGIPEEIRE 306 >gi|104782054|ref|YP_608552.1| sensory box histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111041|emb|CAK15761.1| putative sensory box histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 680 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 28/198 (14%) Query: 22 ICHDIISPIGAIHNSLEL----LDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFG--- 72 I HD + +G I + EL L++ ++D + S+ A + + LAF Sbjct: 316 IAHDFNNLLGGILGAQELVRQRLEQARLDDIPALLDTAGDSARRAAALVHRL-LAFSRRQ 374 Query: 73 ----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLF 123 SV +LI DIE++I + V V W+ ID + + LLNL Sbjct: 375 TLLPQATSVGALI--LDIEELIRRSVGPAIAVHVGCAPGLWS-TFIDPPQLES-ALLNLC 430 Query: 124 MVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 + A +LP GG++ I ++ G + G ++ Sbjct: 431 INARDALPDGGRIEIRCENLSLDTERATALDLAAGEYLQL--SVEDNGRGMPAEVVERAI 488 Query: 181 IQFYYVILLAHENKIRLL 198 F+ L + L Sbjct: 489 DPFFTTKPLGQGTGLGLS 506 >gi|299138772|ref|ZP_07031950.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298599408|gb|EFI55568.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 592 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61 ++ + + L + + H+I +P+ A+ N L L+ + +E Q ++L+S Sbjct: 353 SQAALLATEKLAVAGRLAATLAHEIHNPLDAVGNLLYLMKDGATPEESTQFLQLASQELD 412 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEKIDL 111 + R G + + + D+++++E + ++ R + + Sbjct: 413 RVTQISRAMLGMYRESKTPV-IVDVKEMLESVLLLLNRQMSQLQLEVRTEFASNASVTGY 471 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVD 169 E ++ +NL A + +GG + + ++ + + G + I D Sbjct: 472 PVELRQVFINLLSNAADASTQGGIIAVRTKLRSAVRSGKTGGRQAGVEITISDNGVGISD 531 Query: 170 GNVESTIDSHDIQFYYV 186 + Q ++ Sbjct: 532 AAL-----PQVFQPFFT 543 >gi|229837581|ref|ZP_04457743.1| putative histidine kinase sensor [Yersinia pestis Pestoides A] gi|229704269|gb|EEO91280.1| putative histidine kinase sensor [Yersinia pestis Pestoides A] Length = 474 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 23/153 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ SP+ AI + ELL E + + LI R++ + ++S + Sbjct: 267 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 324 Query: 83 LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L + + V K V + L ++ L NL Sbjct: 325 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALNNLIDN 381 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG++++S + + + +++ +G+ Sbjct: 382 ALDFTPAGGEISVSGERQDDTYLITVEDSGSGI 414 >gi|209546371|ref|YP_002278261.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539228|gb|ACI59161.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 642 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 17/172 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 I HD + + A+ SLE+L + +D + L+ + A L LAF + + Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDRSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346 Query: 79 SLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128 + D+ ++ + + R I + ++ +LNL + A Sbjct: 347 LHMEPIDVSGLVRGMMDMLSRSLGPLTRIETSFPIRLPTILTDPNQLEMAILNLVVNARD 406 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178 ++P GG++ + + + L G R ++ + +E I Sbjct: 407 AMPSGGRILLRAAEESVPSGKGLLPPGRYIRIAVIDEGEGMDAKTMEQAITP 458 >gi|66045686|ref|YP_235527.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256393|gb|AAY37489.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 676 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGRTEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|305667236|ref|YP_003863523.1| two-component system sensor histidine kinase [Maribacter sp. HTCC2170] gi|88708170|gb|EAR00408.1| two-component system sensor histidine kinase [Maribacter sp. HTCC2170] Length = 526 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 79/215 (36%), Gaps = 25/215 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLK-FMRLAFGYTGS 76 H+ +PI I+ ++E + + ++ +Q+IR + +++ +R++ Sbjct: 311 HEFKTPIATINLAVEAIKNPQVIEDKERVMRYLQMIRDENKRMHAQVENVLRISKLEKNQ 370 Query: 77 VDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 +D D+ +I+D IA ++ + D+ L + Sbjct: 371 LDISKDRVDVHDIIQDAIAHVELIVADRGGYIETHLEAGRRDVLANEMHFTNVLVNILDN 430 Query: 129 SL---PRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSH 179 ++ P K+ I Q+ KN + ++ G + EKF + G++ + H Sbjct: 431 AIKYSPEAPKIDIYTQEVKNNVVIEVRDQGAGMSKAVLKKVFEKFYREHTGDI-HNVKGH 489 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + YV + +++ + E D L Sbjct: 490 GLGLAYVKRIIEDHQGEVYAESEKDKGSTFYIKLP 524 >gi|152973318|ref|YP_001338464.1| sensory histidine kinase CreC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958167|gb|ABR80197.1| catabolite repression sensor kinase for PhoB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 474 Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 74/203 (36%), Gaps = 17/203 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H++ SP+ AI + E+L E G EV + ++ R++ + ++S + + Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPEVAARFTDNILAQNTRMQLLVERLLQQARLESRLEI 323 Query: 84 GDIEQVIEDFIAV----------DKRVQVSWTGEKIDLSRE---RAKILLNLFMVAHASL 130 +I+ K + + W + ++ + A+ L NL A Sbjct: 324 KQQPVLIDALYQRLTEERNIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFT 383 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187 P+GG++ ++ + E S+ NG F + E S + +V Sbjct: 384 PQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGLGLAFVR 443 Query: 188 LLAHENKIRLLPEIIDDHNVVLS 210 +A + + + VV + Sbjct: 444 EVARLHHGDINLHNRPEGGVVAT 466 >gi|330950928|gb|EGH51188.1| sensor histidine kinase [Pseudomonas syringae Cit 7] Length = 468 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + + RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGDRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|283788575|ref|YP_003368440.1| two-component system sensor kinase [Citrobacter rodentium ICC168] gi|282952029|emb|CBG91758.1| two-component system sensor kinase [Citrobacter rodentium ICC168] Length = 474 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 25/212 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF--------MRL------ 69 H++ SP+ AI + E+L E G ++++ + +S R++ RL Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPDIVKRFTDNILSQNARMQMLVETLLRQARLENRQEI 323 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVA 126 A + D + K++ + T + ++ E A + L NL A Sbjct: 324 ALSPVAVDALFARVSDARAIQLA----TKKIALKMTPTTLTVAAEPALLEQALGNLLDNA 379 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQF 183 P GG +T+S Q ++ G P F + E+ S + Sbjct: 380 IDFTPEGGTITLSAQAHGERVALTVSDTGTGIPDFALPRLFERFYSLPRENGQKSSGLGL 439 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V +A K R+ V + L + Sbjct: 440 AFVSEVARLLKGRIELRNRPQGGVEATLTLHR 471 >gi|224368970|ref|YP_002603134.1| sensory box histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691687|gb|ACN14970.1| sensory box histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 476 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 19/213 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGS 76 I HD+ SP+ I EL + + + S++ + RL + ++ G Sbjct: 258 IAHDLKSPLTRIRGLAELTLVGNKDSGAFESMAASTIEEVDRLLSMINTMLVISRAEAGQ 317 Query: 77 VDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVA 126 + D+ ++ D +A DK + + T ++R + L NL A Sbjct: 318 GEFRFEPVDLSGLVHEACDLFDAVAEDKDILLKCTVPAPVVARVDRGMIQRALTNLIDNA 377 Query: 127 HASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182 P GG+V + V D + G + F + + + + Sbjct: 378 LKYTPCGGRVWVEVVDAGGGRVEIQVHDTGKGIAVSDIERIFDRFFRVDPSRSESGAGLG 437 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +A + L E + V S L K Sbjct: 438 LCLARAIARGHGGDLCVESVLGKGSVFSLRLPK 470 >gi|221235903|ref|YP_002518340.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|220965076|gb|ACL96432.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 815 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%) Query: 86 IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 +++ + D R+ +ID + A LLNL + A + P GG+V+I + Sbjct: 536 LKRALGDAYTFHLRLGAGVRSARIDAGQFEA-ALLNLVVNARDATPPGGEVSIESRPVTL 594 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL---------------LA 190 + G R + +++ + ++ ++ A Sbjct: 595 DRKEGDLEPGQYLRVA---VRDTGTGMDAATIARAVEPFFTTKPPGEGTGLGLSQVYGFA 651 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ +L E ++ LL Sbjct: 652 RQSGGSVLIESTPGQGATVALLLP 675 >gi|170747699|ref|YP_001753959.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654221|gb|ACB23276.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 416 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 21/208 (10%) Query: 18 LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVM----QLIRLSSMSAIIRLKFMRL 69 L + I H+I P+ +I L LLD ++ +++ Q I A + R Sbjct: 196 LSASIAHEIGQPLSSIGMTAGAMLRLLDRADLDRDLLRRQCQRIVDQVTRAGDIIDRTRR 255 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSW---------TGEKIDLSRERAK 117 SV + + + +I F+A D +++++ + ++I L + Sbjct: 256 MAAKRDSVRAPVSVAEILTEAAQFVAHDLNRGKIRLTVVPADAAAQVSADRIQLQQVFVN 315 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 +L+N + + G ++T+ + NG P+ ++ DG + + Sbjct: 316 LLMNAIQIHRQARTPGPEITVETTCRDGSITVDVVDNGPGL-DPDAVDRLFDGFFTTRPE 374 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 + + + + D Sbjct: 375 GLGLGLRICRTIVAAHGGSIDARSRDGA 402 >gi|159900425|ref|YP_001546672.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893464|gb|ABX06544.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 850 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 17/155 (10%) Query: 18 LCSRICHDIISPIGAI-HNSLELLDEVGIED--EVMQLIRLSSM-SAIIRLKFMRLAFGY 73 L S + HD + + I N L+ E+ + E +++I ++ A + R A Sbjct: 489 LASGVTHDFNNLLAGILGNVQVLMGELQNPEQRETLRVIERAAKDGAETVKRIQRFARKD 548 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAK--------ILL 120 G +D+ + L ++ + D V R V+ ++ L+ + +L Sbjct: 549 DGEIDAPVELHELAEDALDLTRVRWRNAAQEQGVNIELQREILNVPTIRGHAAELREVLT 608 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL + A ++P GG + ++ +E S+ +G Sbjct: 609 NLIINAVDAMPNGGMLRVATGQRGSEVFVSVADSG 643 >gi|330971293|gb|EGH71359.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 676 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGRTEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|163736397|ref|ZP_02143816.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161390267|gb|EDQ14617.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 771 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 23/194 (11%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78 HD + + AI +LL D+ + + I ++ A + + LAF Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDQDFGDLIQIHENANRAAALVSQL-LAFSRKQTLQP 465 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 ++ + D + + ++V ++ + + + S R+ ++L+NL + A ++P Sbjct: 466 EVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMP 525 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQ-----FYY 185 +GG++ I + + N A P + + + I +Q FY Sbjct: 526 QGGEIRI----ETEAVVLDQPLERNRAVVPAGDWVTVKVSDEGVGISPDKLQKVFEPFYT 581 Query: 186 VILLAHENKIRLLP 199 + L Sbjct: 582 TKRTGEGTGLGLST 595 >gi|328953066|ref|YP_004370400.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328453390|gb|AEB09219.1| integral membrane sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 609 Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFG 72 S I HDI +P+ + ++E L + + E +Q I SS + ++ L R G Sbjct: 368 SMIVHDIKAPLTGVRLTIETLQDESLPPEISHKLQGIIESSEALLLHLHNVLDISRYESG 427 Query: 73 YTGSVDSLIGLGD-IEQVIEDF--IAVDKRVQVSWTGEKIDLS-----RERAKILLNLFM 124 + L I+++I + +A ++ + + R ++L NL Sbjct: 428 QLKLQPEEVYLDFTIQRLINQYSNMANNQGITLQALIPPTLPPVWADERYLERVLFNLIA 487 Query: 125 VAHASLPRGGKVTISVQ 141 A + GG++ I+ + Sbjct: 488 NALEATSPGGRIEIAAR 504 >gi|91786450|ref|YP_547402.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91695675|gb|ABE42504.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 487 Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 18/159 (11%) Query: 18 LCSRICHDIISPIGAIHNSLE-LLDEVGIEDE---------VMQLIRLSSMSAIIRLKFM 67 L + I HD+ +P+ ++H LE LL + D + R + A + Sbjct: 272 LFANISHDLRTPLTSLHGYLETLLIKADALDPGERRRYLEIALAQSRKVARLAQELFELA 331 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------KIL 119 RL +G L D+ Q + + + I ++L Sbjct: 332 RLEYGVVKPDKETFALADLVQDVFQKFELAAEARHQRLVPDIAPGLPVVTADLGMIERVL 391 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 NL A P GG++ + ++ + + G Sbjct: 392 TNLLDNAIRHTPEGGEIVVQLRQDRESVCVEVSDTGPGI 430 >gi|83951870|ref|ZP_00960602.1| sensory box sensor histidine kianse/response regulator [Roseovarius nubinhibens ISM] gi|83836876|gb|EAP76173.1| sensory box sensor histidine kianse/response regulator [Roseovarius nubinhibens ISM] Length = 754 Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 14/155 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG- 72 L S + HD + + AI +LL D+ + +Q I ++ A + + + LA+ Sbjct: 376 LASGVAHDFNNLLTAITGHCDLLLLRHDQHDSDFSDLQQINQNANRAAVLVNQL-LAYSR 434 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMV 125 ++ L D + + +R+ +S + + S R+ ++L+NL + Sbjct: 435 KQTLTPEIMDLRDTLADLTHLLNRLVGERIDLSLSHDPELWSIRADRRQFEQVLMNLVVN 494 Query: 126 AHASLPRGGKVTISVQD-SKNENIFSLKINGNLAR 159 A ++P GG+V I ++ + + + + R Sbjct: 495 ARDAMPDGGEVRIRTENLVLDSPMIRDRATVSPGR 529 >gi|323691919|ref|ZP_08106171.1| hypothetical protein HMPREF9475_01034 [Clostridium symbiosum WAL-14673] gi|323504035|gb|EGB19845.1| hypothetical protein HMPREF9475_01034 [Clostridium symbiosum WAL-14673] Length = 679 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 24/211 (11%) Query: 24 HDIISPIGAIHNSLEL--LDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 HD+ SP+ A+ N ++ L++ G E MQ I RL+ ++ G G++ Sbjct: 470 HDMKSPLTALSNMAQIIRLNDIMLDGDTREKMQGIEDKCSVLADRLESIQELAGEAGALP 529 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------------SRERAKILLNLFMVA 126 + L + + + DF + + V TG SR+ + L NL A Sbjct: 530 QMEPLS-LNRFLADFYRSN-QPVVELTGPDFLCELTPLPCTVRADSRKLTRALENLIYNA 587 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQF 183 P GK+ +S++ +N + + G P+ F ++ + + Sbjct: 588 GEFTPPDGKIVLSLKREQNFALICVADTGCGIPETEIPKVFDRLYTTREDEG--GQGLGL 645 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + E+ + E + L Sbjct: 646 SITRAIVLEHGGEISVESVVGGGSTFVIRLP 676 >gi|167841263|ref|ZP_02467947.1| Periplasmic sensor signal transduction Histidine Kinase [Burkholderia thailandensis MSMB43] Length = 429 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 26/214 (12%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRL 69 +L I HDI +P L L E R S+ + + +F+ Sbjct: 226 AEMLAG-ISHDIRTP-------LTKLRMAIAAPEAFDAPRESAERFVAEIDAIVDQFIDF 277 Query: 70 AFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNLFMVA 126 A G L IEQ++ D+ + R + R ++L+NL Sbjct: 278 ARSGDGETVLPGDLNALIEQLVADYTGLGYRFDMRLAPLPAMRFRPVGMQRLLMNLMH-- 335 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG------NVESTIDSHD 180 +A++ G+V +SV S +++ PE ++ + Sbjct: 336 NAAIH--GRVGLSVHTSVEGGRVVIRVEDAGPGVPEDALPLLTQPFRRVERPDRPSGGTG 393 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +A ++ RL + + + + L Sbjct: 394 LGLAIAERIARQHGGRLDLSLRNSGGLKATVRLP 427 >gi|78222180|ref|YP_383927.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193435|gb|ABB31202.1| histidine kinase [Geobacter metallireducens GS-15] Length = 531 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 16/150 (10%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIH--NSLELLDEVGIEDEVMQLIRLSSMSAI--- 61 L S L + LL + H+I +P+ +I L L+DEV + +R A Sbjct: 262 LRSEKLASVGLLAAGTAHEIGTPLTSIMGYAGL-LMDEVADDPRKADYLRRIERDAERID 320 Query: 62 ----IRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SR 113 L F R A G T +VD + ++ ++ F + V + I + Sbjct: 321 RIVRDLLNFARPAEGTTETVDVVALVASTLEMLELQGAFKGIAVTVDAAGELPPIVVDPF 380 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS 143 + ++L+NLF+ A ++ GGK+ + Sbjct: 381 QLQQVLINLFINARDAMSDGGKLDVRTSAD 410 >gi|27380599|ref|NP_772128.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353764|dbj|BAC50753.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 907 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 75/226 (33%), Gaps = 43/226 (19%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + I ++E++ E + I A R L F R Sbjct: 546 HDFNNVLTVITGTIEIIQEGLADRPQFAAIAQLIDDAAARGAEITSQLLTFAR----RQP 601 Query: 76 SVDSLIGLGDI--------EQVIEDFIAVDKRVQVS-WTGEKIDLSRERAKILLNLFMVA 126 I + + + ++ + I + R+ W+ + + ++NL + A Sbjct: 602 LEPREIDVNALVVETAKLLKPILGEHIEIVTRLADDAWSAMAD--PSQLSSAIVNLAVNA 659 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFY 184 ++P GG++T+ + + + ++ +G++ R + D + + I + + Sbjct: 660 RDAMPDGGRLTLETANRELD---GVRSDGDIMRGAFVMIAVTDTGHGIPADIRERVFEPF 716 Query: 185 YVIL---------------LAHENKIRLLPEIIDDHNVVLSALLEK 215 + A + + E + V+ L + Sbjct: 717 FTTKGVGRGTGLGLSMVYGFARQTGGTVAIESEEGQGTVMRLFLPR 762 >gi|16127106|ref|NP_421670.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|13424490|gb|AAK24838.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] Length = 794 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%) Query: 86 IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 +++ + D R+ +ID + A LLNL + A + P GG+V+I + Sbjct: 515 LKRALGDAYTFHLRLGAGVRSARIDAGQFEA-ALLNLVVNARDATPPGGEVSIESRPVTL 573 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL---------------LA 190 + G R + +++ + ++ ++ A Sbjct: 574 DRKEGDLEPGQYLRVA---VRDTGTGMDAATIARAVEPFFTTKPPGEGTGLGLSQVYGFA 630 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ +L E ++ LL Sbjct: 631 RQSGGSVLIESTPGQGATVALLLP 654 >gi|284037982|ref|YP_003387912.1| signal transduction histidine kinase with CheB and CheR activity [Spirosoma linguale DSM 74] gi|283817275|gb|ADB39113.1| signal transduction histidine kinase with CheB and CheR activity [Spirosoma linguale DSM 74] Length = 1418 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 15/159 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLAFGYTGS 76 HD+ G I + LL+ + ++E Q++ + + + L + RL G Sbjct: 1199 HDLRGSFGVIQGAAALLNLMDTKEEREQMLSMLNRNLGQVTSLLTQLLDYSRLEAGQEQV 1258 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKIDLSRERAK---ILLNLFMVAHAS 129 + + + + + + W + + ++ + K I NL + A Sbjct: 1259 FSQSFDASHLFRELSTSMEPLAKDRGLWLKVHGPDTLPVTGDMVKVQRIAQNLILNALKY 1318 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 GG VTIS + + + ++ PE+ + + Sbjct: 1319 TREGG-VTISWELGEGNTGWQFSVSDTGPGLPEEAARQL 1356 >gi|168700127|ref|ZP_02732404.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Gemmata obscuriglobus UQM 2246] Length = 393 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 25/209 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------- 65 + +ALL H++ +P+ I N+LE+L + ++ R + +LK Sbjct: 169 EFLALLA----HELRNPLTPILNALEILRLANDSGDTVRRQRERMERQVAQLKRLVEDLL 224 Query: 66 -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKIL 119 R+ G + + ++ D ++ E++ L+ +R ++ Sbjct: 225 DVSRITTGKLRLAPERLTIQELIDSAVDMSRSQLEAAKLELVLNVPAEQVVLTGDRVRLT 284 Query: 120 LNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKING---NLARFPEKFT--QIVDGN 171 L V + + GG+V +SV +++ G + P+ F VD Sbjct: 285 QVLCNVLNNAAKFTEPGGRVFVSVAPHPGRVTVTIRDTGVGIAESVLPQLFGLFTQVDRT 344 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPE 200 + + I V L + + Sbjct: 345 LSRSQSGLGIGLALVRRLVEMHGGTVTAH 373 >gi|148655014|ref|YP_001275219.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148567124|gb|ABQ89269.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 893 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 12/162 (7%) Query: 18 LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAF-GY 73 L S + HD + + AI +L+L L + D Q IR + ++ R LA+ G Sbjct: 496 LASGVAHDFNNLLTAILGNLDLALLTLSRNDPAAQPIRNAMLATRYAAGLTRQLLAYAGK 555 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRER-----AKILLNLFMVA 126 + + L +I Q + + V K+ ++ + +I+LNL + A Sbjct: 556 GNYQVTDVNLTEIVQGMAAMLRVSVGKQARLELRLAPDLPVFQADPSHIQQIVLNLILNA 615 Query: 127 HASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 SLP G G +T+ + F + N P ++ + Sbjct: 616 AESLPSGEGTITVRTDVRDCDEAFLKRNRINNQAPPGRYLLL 657 >gi|330940801|gb|EGH43783.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 671 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 305 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 362 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I V+ V ID + LLNL + Sbjct: 363 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 421 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++PRGG++TI + +E + + G I+ F+ Sbjct: 422 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 481 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 482 TTKPLGQGTGLGLS 495 >gi|134300143|ref|YP_001113639.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134052843|gb|ABO50814.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 460 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 21/182 (11%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRL 55 M K I L ++LV + + I H+I +P+ + L+L +++ M +I Sbjct: 226 MEKEIK-KLDRLNLVGQVAAGIGHEIRNPLTTVRGFLQLFQTKKESCDIYKEQFMLMIEE 284 Query: 56 SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVSWTG 106 + I +F+ LA + + + ++ + + V Sbjct: 285 LDRANSIITEFLTLA----RNKPERVEMKNLNSIVTKILPLLQAQALKEEKYVYAVLDKV 340 Query: 107 EKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + L + I+LNL ++ RGG +TI + I S++ G + PE Sbjct: 341 PDLLLDENEIRQIILNLIRNGLDAMSRGGNITIRTYIQEPHTILSIRDEGEGIK-PEVLE 399 Query: 166 QI 167 +I Sbjct: 400 KI 401 >gi|126439646|ref|YP_001057796.1| sensor histidine kinase [Burkholderia pseudomallei 668] gi|126219139|gb|ABN82645.1| sensor histidine kinase [Burkholderia pseudomallei 668] Length = 627 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 22/191 (11%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91 +D + +++ LI S A+ R++ F R +G + L + Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442 Query: 92 DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + E L + +++ +NL + A S+ G +TI + Sbjct: 443 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203 S+ G + +I D + H I + + R+ E Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGHGTGLGLSISHGIVEHHGGRIDVESHV 561 Query: 204 DHNVVLSALLE 214 L+ L Sbjct: 562 GRGSTLTVTLP 572 >gi|328954099|ref|YP_004371433.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454423|gb|AEB10252.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 623 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 85/242 (35%), Gaps = 35/242 (14%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDE---VM 50 + + + S L +L L S + H+I +P+ ++ LE ++ E++ M Sbjct: 373 LKETQQAAVRSQQLASLGQLASGVAHEIRTPLTSLKLFLESIENEITISPEYEEDFQVAM 432 Query: 51 QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKI 109 IR + L F R + + ++ ++ED + + R ++ T + Sbjct: 433 NQIRRMEATINRFLDFAR-------PREPVYSWLEVGDLLEDALLIIGPRARLQETTIRK 485 Query: 110 DLS----------RERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKI 153 LS ++ + LLNL + A ++P+ G++T++ + + I Sbjct: 486 SLSPSLPKIKGDRKQLGEALLNLMVNALEAMPQRGRLTVAAHPGELPGTDGSRPCVVIDI 545 Query: 154 NGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 + E ++ + + + V + ++ + S Sbjct: 546 SDTSPGIQGENIGRLFEPFFTTKATGAGLGLSIVSSTVQRHGGEVMVRSVVGRGTTFSVF 605 Query: 213 LE 214 + Sbjct: 606 IP 607 >gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 396 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 16/129 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRL----KFMRLAFGYTGS 76 H++ +P+ IH +ELL E G++ E +R S+ + L + RL G Sbjct: 166 HELRTPLNGIHGMIELLAESGLDAQQREFADYLRGSANRLLALLTSLMELSRLDAGGMVL 225 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEKI-DLSR-------ERAKILLNLFMVAH 127 + L + + + + + +S+ + D+ R + L+NL A Sbjct: 226 APAPYDLSETLEALTAAFSRKAAAKGLSFRADMATDMPRLVVGDRAALVQALVNLLENAV 285 Query: 128 ASLPRGGKV 136 PRGG V Sbjct: 286 KFTPRGGVV 294 >gi|225569380|ref|ZP_03778405.1| hypothetical protein CLOHYLEM_05464 [Clostridium hylemonae DSM 15053] gi|225161588|gb|EEG74207.1| hypothetical protein CLOHYLEM_05464 [Clostridium hylemonae DSM 15053] Length = 352 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 20/214 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM--------RLAFGY 73 I H + +P+ A+ EL+++ I D I +LK++ R+ G Sbjct: 133 ISHQLKTPVAALSMCFELMEDARITDAERAEFAARGAGEIKKLKYLTETLTNLSRMEAGM 192 Query: 74 TGSVDSLIGLGD--IEQVIEDFIAVDKR-VQVSWTGEKIDL----SRERAKILLNLFMVA 126 L + + V ++ + + +++ K + + A+ N+ A Sbjct: 193 IQIHPGEASLKETLVRAVNGVYLKANMKNIEIEMEDFKDMMLPHDKKWTAEAFANVLDNA 252 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE--STIDSHDI 181 P G V I V + ++ G E F + G+ + + Sbjct: 253 VKYSPEGTTVHIRVSPQISYVFVEIEDEGIGIAKEEYQNIFRRFYRGSRPEIEACEGAGV 312 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 Y V + E + V L K Sbjct: 313 GLYLVRQILEEQGGSIRAVAGKAGGTVFQMTLPK 346 >gi|114767135|ref|ZP_01446015.1| sensor histidine kinase [Pelagibaca bermudensis HTCC2601] gi|114540697|gb|EAU43765.1| sensor histidine kinase [Roseovarius sp. HTCC2601] Length = 426 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 15/172 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YT 74 ++ S + HD+ +P+ + L +LD+ E + L F R G Sbjct: 222 TMMLSGVSHDLRTPLTRLRLGLSMLDDEDREPLERD-VEDMQRLIDAFLDFAR---GDAL 277 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 + + DI + + D R V V G+ + L NL + ++ Sbjct: 278 AAAAEPVDPVDIVESVVDDAQRAGRNVALVSVEGEGQVSLRPLAMRRALENLV---NNAV 334 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 G +SV S ++ +G PE+ +D Q Sbjct: 335 RYGSCCEVSVTLSDKSLRLRVEDDGPGI-PPERRED--AQRPFVRLDPARNQ 383 >gi|313496698|gb|ADR58064.1| Sensory histidine kinase CreC [Pseudomonas putida BIRD-1] Length = 478 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 23/206 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75 H++ SP+ AI + ELL + + + RL+ R+ Sbjct: 265 HELKSPLAAIRGASELLQGEDMPADQRARFAGNIERESERLQQMIERLLNLARVEQMQAL 324 Query: 76 SVDSLIGLGDIE-QVIEDFIAV--DKRVQVSWTGEKIDL----SRERAKILLNLFMVAHA 128 + + L + +++ A +QV + L NL A Sbjct: 325 EDEQQVALAALVDELLLAHAARIEGAGLQVRQRVPATLRLLCDPFLMRQALANLLDNALD 384 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQ 182 P GG + ++ + S+ G R E+F + + Sbjct: 385 FTPEGGTLLFDLERAGERVALSVFNQGQAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLN 444 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVV 208 F V + + L + +D V Sbjct: 445 F--VAEVMQLHGGALAVDNVDGGVRV 468 >gi|226227148|ref|YP_002761254.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090339|dbj|BAH38784.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 885 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 62/154 (40%), Gaps = 12/154 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIRLK----FMRLAFGY 73 I HD + + AI + ELL + +L I ++ A + F R + Sbjct: 534 IAHDFNNYLSAIATNAELLRDELPLLSSHRLEASEILGAAQRASALTRQILVFSRRQVVH 593 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 +D + + +++ + V+++ + + + ++ L+NL A ++ Sbjct: 594 DERLDVNSAIHALRRLLSRLVGEQIEVRITVAPDAPRVMFDHGRLEQVLMNLAANARDAM 653 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 P GG +TIS + L+++ + A P + Sbjct: 654 PAGGCLTISTE-RTTAGDLRLRVSDSGAGIPPEV 686 >gi|146282782|ref|YP_001172935.1| sensor histidine kinase [Pseudomonas stutzeri A1501] gi|145570987|gb|ABP80093.1| sensor histidine kinase [Pseudomonas stutzeri A1501] gi|327481120|gb|AEA84430.1| sensor histidine kinase [Pseudomonas stutzeri DSM 4166] Length = 483 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 36/216 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ + + ++L+ A+ +K Sbjct: 286 LFSAISHDLRTPITRLRLRVELLEDEAQQVKFNRDLDELELL---VKGALQCVK------ 336 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERA--KILLNLFM 124 + I D+ ++E + RV + + A + + NL Sbjct: 337 --DTDIHENIEAVDLNLLLEHIVEPYQACDQTRVTLDGRALATYPGKPLALKRCIGNLL- 393 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 +L G + + V+D K + + G PE+ + V + Q Y Sbjct: 394 --DNALKYGERAHLHVEDGKEALVLHVDDEGPG--VPEQRLEHVF-EPHVRLSGQQ-QGY 447 Query: 185 YVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 + L +AH + L + + ++ L + Sbjct: 448 GLGLGIARNIAHAHGGELSMRNLQQGGLRVTLTLPR 483 >gi|146278410|ref|YP_001168569.1| integral membrane sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145556651|gb|ABP71264.1| integral membrane sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 766 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 27/198 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73 I HD + + AI +LL ++ L I ++ A L F R Sbjct: 403 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 458 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126 I L ++ + + +RV + R+ ++L+NL + A Sbjct: 459 QTLKPERIELQEVLADLTHLLNRLVGERVTLRLAHAPELGPIRADKRQLEQVLMNLVVNA 518 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182 ++P GG + I + + P ++ I + I +Q Sbjct: 519 RDAMPEGGVIRIETEALTLADELR---RDRAVVPPGRYAAIHVQDEGVGIPPDRLQKIFE 575 Query: 183 -FYYVILLAHENKIRLLP 199 F+ + L Sbjct: 576 PFFTTKRTGEGTGLGLST 593 >gi|261404373|ref|YP_003240614.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261280836|gb|ACX62807.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 543 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 89 VIEDFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNEN 147 I+ + K Q I R + K + LN+ A +LP GG + I + Sbjct: 410 AIQASLGGIKMTQCFGRNATILCDRNQIKQVFLNILKNAMEALPYGGNIHIQMDVEDGYQ 469 Query: 148 IFSLKINGNLA 158 + NG+ Sbjct: 470 RVTFTDNGSGM 480 >gi|39996421|ref|NP_952372.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39983301|gb|AAR34695.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|298505431|gb|ADI84154.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 367 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 80/222 (36%), Gaps = 18/222 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQ----LIRLSSMSAIIR 63 + L AL + + + H+I +P+G+I + E+L D+ D + LI+ + + Sbjct: 145 AERLSALGEMSAMLAHEIRNPLGSIRGTAEILRDDFSPGDRKFEFLEILIKETDRLNRVV 204 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVS-WTGEKIDLSRERAK- 117 F+RLA G ++ +++ + A + + + RER + Sbjct: 205 EDFLRLARPLDGEKKRCDLAAELRELVTLQESEATARGIGLSLEAGEAPTVAGDRERLRQ 264 Query: 118 ILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGN---LARFPEKFTQIVDGNV 172 LNL + A + GG+V + +++ + + ++I + P + +I Sbjct: 265 AFLNLILNALQATGEGGRVAVRLAMRGASGDMPAGVEITVSDTGRGIDPAQREKIFTPFF 324 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + E L Sbjct: 325 TTKEGGTGLGLVITQRIVEAHGGTIGLESEPGRGTTFRVWLP 366 >gi|300694205|ref|YP_003750178.1| sensory histidine kinase in two-component regulatory system with ompr (envz) [Ralstonia solanacearum PSI07] gi|299076242|emb|CBJ35556.1| putative sensory histidine kinase in two-component regulatory system with OmpR (envZ) [Ralstonia solanacearum PSI07] Length = 434 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 15/146 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS-- 79 I HD+ +P+ + E+L + I S ++ LA+ +G ++ Sbjct: 231 IAHDLKTPLSRLRLRAEMLTDPKAGAG----IERDVDSMSAIVEQF-LAYAQSGDSEARD 285 Query: 80 -LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKV 136 ++ + +++ F K V + + +I++NL + G + Sbjct: 286 VMVDRH-LRGLVQPFAEQGKHVALDLRAGDRFRLKPTHLERIVVNLL---DNAFAYGAE- 340 Query: 137 TISVQDSKNENIFSLKINGNLARFPE 162 + V + +E F+L + + A P+ Sbjct: 341 PVRVATAADERSFTLTVEDHGAGIPQ 366 >gi|221200309|ref|ZP_03573351.1| periplasmic sensor signal transduction histidine kinase [Burkholderia multivorans CGD2M] gi|221205988|ref|ZP_03579002.1| periplasmic sensor signal transduction histidine kinase [Burkholderia multivorans CGD2] gi|221174000|gb|EEE06433.1| periplasmic sensor signal transduction histidine kinase [Burkholderia multivorans CGD2] gi|221179650|gb|EEE12055.1| periplasmic sensor signal transduction histidine kinase [Burkholderia multivorans CGD2M] Length = 785 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 15/209 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT-GS 76 + HD+ SP AI +E + + Q L A L +F+ LA S Sbjct: 570 LSHDMRSPQAAILALIEQRRQAPADLSEAQFADLVGHYARWTLTLADQFLLLARAQARAS 629 Query: 77 VDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHAS 129 + + L + D + A KRV++ E L A + NL A Sbjct: 630 KATEVDLAPLLGDAVDDLWAHASAKRVRIRLFAEPGMLVVADALLLRRAFANLIDNAVRF 689 Query: 130 LPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 P G VT+S + S+ G + P FT+ + H + +V Sbjct: 690 SPEGATVTVSADERDGRWCVSVADTGIGIPAHQLPNLFTEFFRVDARGATAGHGLGLAFV 749 Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + E V + LL + Sbjct: 750 KQVVDALGGEIHVESAVGRGSVFTVLLPR 778 >gi|229591085|ref|YP_002873204.1| putative transmembrane two-component sensor histidine kinase transcriptional regulatory protein [Pseudomonas fluorescens SBW25] gi|229362951|emb|CAY49879.1| putative transmembrane two-component sensor histidine kinase transcriptional regulatory protein [Pseudomonas fluorescens SBW25] Length = 439 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 22/172 (12%) Query: 1 MAKNICFNLSSM--DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M N+ ++ L A + HD+ +P+ + +ELL+ D++++ + S Sbjct: 226 MQANLARHVEGRTRMLAA-----VSHDLNTPLTELRLQVELLEPGEARDDMLESLSELSA 280 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDL----S 112 L F+R +V + +++D +R+Q V+WTG + Sbjct: 281 MVRETLNFVR-----DDAVQEPTTTLSLTALLDDLAKRYQRLQQPVNWTGAPPLMLTCRP 335 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 + L NL +L G +S+ ++ ++I + PE + Sbjct: 336 LALKRALTNLI---DNALHHAGDARLSLA-RQDNGWLCIEILDHGQGLPEDW 383 >gi|224368680|ref|YP_002602842.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223691396|gb|ACN14679.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 716 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 11/130 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + I ++ELL + + + + AI R L+F R A Sbjct: 347 HDFNNLLHLIGGNIELLLMKKPANHRDVTLLKTVVKAIDRAAQLVRQLLQFSRNAEVKKQ 406 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPR 132 VD + + +++E I+ ++++ + + +I+LNL A ++P Sbjct: 407 RVDVNHEVTETVKMLERIISKTVSIKLNMDPSVWPIHADPTQVEQIVLNLGGNAVDAMPH 466 Query: 133 GGKVTISVQD 142 GG++ IS+++ Sbjct: 467 GGRLEISIRN 476 >gi|154244983|ref|YP_001415941.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159068|gb|ABS66284.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 581 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 16/218 (7%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65 L L + I H+I +P+G I S EL+ ED +M + +K Sbjct: 360 AQLATLGQAAAVIAHEIRNPLGIIKTSAELVRRKTPMAPSEDRLMMFVLDEVQRIDRLVK 419 Query: 66 -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAK---- 117 + A + L + I Q DF+A + R + ++ + + K Sbjct: 420 ELLDYARPPQCAAVPLDLVTSIVQPALDFMAPELRRRDITLAARLPDHPVPIQGDKDLLH 479 Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 L+NL + A + GG V + V ++ + ++ NG + + D V + + Sbjct: 480 QALMNLLINAMDAAGDGGHVIVRVGQEEDSAVLHVEDNGPGV-PQDVRAALFDPFVTTKV 538 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V A + + + + L Sbjct: 539 NGTGLGLATVRSTAEAHGGAVSHADAPGGGAIFTLRLP 576 >gi|153949138|ref|YP_001399860.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis IP 31758] gi|170023128|ref|YP_001719633.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis YPIII] gi|152960633|gb|ABS48094.1| sensor protein CreC [Yersinia pseudotuberculosis IP 31758] gi|169749662|gb|ACA67180.1| integral membrane sensor signal transduction histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 477 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 23/150 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ SP+ AI + ELL E + + LI R++ + ++S + Sbjct: 265 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 322 Query: 83 LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L + + V K V + L ++ L NL Sbjct: 323 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALTNLIDN 379 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A P GG++ +S + + + +++ +G Sbjct: 380 ALDFTPAGGEINVSGERQDDTYLITVEDSG 409 >gi|217968805|ref|YP_002354039.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|217506132|gb|ACK53143.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 619 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 16/162 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 LL + I H+I +P+G++ LE ++ +D + +R L+ + Sbjct: 400 LLAAGIAHEIHNPLGSLRLGLEAMERRLRGRPERDDRIDDYLRTMDEEIDRCLQVTQRLL 459 Query: 72 GYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDLSRERA-------KILL- 120 + + + D+ V+ D +A D + + D + R ++L+ Sbjct: 460 MLSRPPQARVQPVDVNPVLADTSCLLAYDAENRQIEHILEADKAAPRVWADDADLRMLMI 519 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 NL AH ++P GG+VT+ +E + ++ G + Sbjct: 520 NLVQNAHHAMPSGGQVTLRSHIIGDEVLIEVEDTGVGIPEDD 561 >gi|123443579|ref|YP_001007552.1| sensory histidine kinase CreC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090540|emb|CAL13409.1| putative histidine kinase sensor [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 475 Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 34/216 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMS--------AIIRLKFMRLAF 71 H++ SP+ AI + ELL E M + + S+ RL+ Sbjct: 265 HELKSPLAAITGAAELLRESPPPATAQRFLMNIEQQSTRIQQLVDKMLIQARLE------ 318 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLN 121 VD + +I +I+ + + VS + + A + L N Sbjct: 319 ---SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTN 375 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDS 178 L A P GG+VT+S +E + +++ G+ + F + ++ S Sbjct: 376 LIDNALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGIPDYAQEKIFDRFYSLARANSPKS 435 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + +V +A ++ + E H V L Sbjct: 436 TGLGLNFVREVAAIHQGNISLENRQRHGVCARLTLP 471 >gi|289805213|ref|ZP_06535842.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 134 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 11/103 (10%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ ++S + + + P++ I + Sbjct: 31 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 90 Query: 177 DS-----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D +Q ++ + + I+ V + L Sbjct: 91 DGTGLGLAVVQNI------EQHGGAIKVKSIEGKGAVFTIWLP 127 >gi|149927671|ref|ZP_01915924.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] gi|149823725|gb|EDM82953.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105] Length = 1532 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 33/169 (19%) Query: 1 MAKNICFNLSSMDLVAL--LCSRICHDI---ISPI-----GAIHNSLELLDEVGIEDEVM 50 + L L AL + S I HDI ISP + N L ++ + ++ Sbjct: 1145 LQSTQNMVLQQERLHALAGMASGIAHDINNAISPATLYLESLLENEKNLSEKGYKQLRIV 1204 Query: 51 QLIRLSSMSAIIRL-KFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDF 93 Q + + R+ +F R + S + D + + + Sbjct: 1205 QTAIDDVSNTVDRMGRFAR-----SRSELEPANMCDANDMCLEAIELTRPRWGDMALRNG 1259 Query: 94 IAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQ 141 I + ++S K+ +S + IL NL + A +LP+GG + + + Sbjct: 1260 ITIGITHELSNPLPKLAVSETELREILTNLILNAVDALPQGGHIQLKTE 1308 >gi|149177664|ref|ZP_01856265.1| sensor protein HYDH [Planctomyces maris DSM 8797] gi|148843482|gb|EDL57844.1| sensor protein HYDH [Planctomyces maris DSM 8797] Length = 261 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 10/115 (8%) Query: 56 SSMSAIIRLK--FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSW----TG 106 S+ ++ + A G + S + L + + + + D RV + Sbjct: 79 SAGQRAAKITTGMLSYARG-SDSRQEPVDLVVLVKSVIALVEKDLSMNRVNLHTHFEAQP 137 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 E + ++L+NL + A ++P GG++ ++V+ + N+ + + + A P Sbjct: 138 EVSLNPNQIQQVLVNLIVNARQAMPTGGRLDLAVRLNAEANMAEVIVRDSGAGIP 192 >gi|115379441|ref|ZP_01466541.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1] gi|115363550|gb|EAU62685.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1] Length = 452 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 27/162 (16%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK-F 66 L AL + + + H+I +P+GAI + + LD G + E + +I + F Sbjct: 173 RLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVVTAF 232 Query: 67 MRLA------FGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRE 114 + A FG T L ++ I ++ V++ T K+D E Sbjct: 233 LDYARPLKQNFGPT-------DLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAE 285 Query: 115 RAK-ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKIN 154 + K +L+NL A ++ P G++T+ F + Sbjct: 286 QLKQVLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVA 327 >gi|312962808|ref|ZP_07777295.1| periplasmic sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311282835|gb|EFQ61429.1| periplasmic sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 475 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 74/214 (34%), Gaps = 27/214 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG 72 + L S I HD+ +PI + +ELL++ ++ + + L A+ +K Sbjct: 272 SQLFSAISHDLRTPITRLRLRVELLEDENLQTKFGRDLDELELLVKGALQCVK------- 324 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLFM 124 + I D+ V+E + + RV + + A + + NL Sbjct: 325 -DTDIHENIQPVDLNHVLECLVEPYVAPNGNGRVTLDGYALAAYPGKPLALKRCIGNLI- 382 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181 +L G + ++D + I + G R + F + + + Sbjct: 383 --DNALKYGQNAHLHIEDDGAQFILHVDDEGPGVPEQRLEQVFEPHF--RLSGQQQGYGL 438 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +AH + + + + + + ++ L + Sbjct: 439 GLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPR 472 >gi|283852844|ref|ZP_06370106.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283571754|gb|EFC19752.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 508 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 16/155 (10%) Query: 18 LCSRICHDIISPIGAIH------NSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FM 67 L S + H+I +P+ A + +E D E ++ LK F Sbjct: 286 LSSYLAHEIRNPLFAASGFARQLSRME--DLPQKAREKAGIVVEELTRMEALLKQFLEFA 343 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERA---KILLNLF 123 R G G D +GD + + V+ + ++ + A + L+NL Sbjct: 344 RPVGGIVGVADVGRAIGDAVEASRSQAEGKSVGLAVALASDLPVVTFDPALLKQCLVNLV 403 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A A+LP GG VT+ + +G Sbjct: 404 RNAVAALPGGGLVTLDADRDGERVRLRVTDSGRGL 438 >gi|218677306|ref|ZP_03525203.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium etli CIAT 894] Length = 204 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 13/159 (8%) Query: 47 DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + +Q R + L F R + L ++ + D + VS Sbjct: 44 EGALQGARRGAALTQRLLAFAR----QQDLQVRPVDLAELVSGMNDLLRRSVGTSVSIEP 99 Query: 107 ------EKIDLSRERAKI-LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159 + + ++ LLNL + A ++P GG+++IS+++ + G+ Sbjct: 100 TLPARMPPALVDANQLELALLNLAVNARDAMPDGGRLSISLREERVVGNDGDLGEGSYLV 159 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198 G T+ F+ + + L Sbjct: 160 L--AVADSGTGMDAETLKKAVDPFFSTKEVGKGTGLGLS 196 >gi|331698589|ref|YP_004334828.1| histidine kinase [Pseudonocardia dioxanivorans CB1190] gi|326953278|gb|AEA26975.1| histidine kinase [Pseudonocardia dioxanivorans CB1190] Length = 443 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 13/187 (6%) Query: 24 HDIISPIGAIHNSLEL-LDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 H + +P+ + SLE LD+ + D+ + + L R G+V Sbjct: 228 HQLRTPLAGLRLSLETALDDPEADLRAAIDDAVHAADGLQRTVEDLLALARDIRTGRGTV 287 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN--LFMVAHASLPRGG- 134 D + + D+ + + R + E+ L ++ + L ++ +L GG Sbjct: 288 DMVSLVADVVEPWRRLLVERGRTLLV-RAEEGLLPASASEAAIRQVLAVLLENALQHGGG 346 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE--KFTQIVDG-NVESTIDSHDIQFYYVILLAH 191 VT+ V+D+ + G P F + G + H I LA Sbjct: 347 TVTVDVRDAAGALAVDVSDEGPGILMPPTTLFARRSAGIDGPRPTGGHGIGLALARSLAE 406 Query: 192 ENKIRLL 198 RL Sbjct: 407 AEGGRLT 413 >gi|256390004|ref|YP_003111568.1| histidine kinase [Catenulispora acidiphila DSM 44928] gi|256356230|gb|ACU69727.1| histidine kinase [Catenulispora acidiphila DSM 44928] Length = 505 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 55/155 (35%), Gaps = 9/155 (5%) Query: 22 ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLI----RLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ A+ ++L+E QLI R + ++ R G Sbjct: 288 VSHELRTPLTAMTAVSDMLEEATDVGDESAPAAQLIVTETRRLARLVEDLMEVSRFDAGT 347 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133 + L + D RV ++ + ++ ++ +I + + + ++ G Sbjct: 348 AQLRREDVDLVALVHGCLDARGWTGRVTLN-VPPSLAVTVDQRRIDVIVANMVGNAIKHG 406 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 G+ + + L++ + P + + Sbjct: 407 GEGPVELSIGAFGPNLVLQVRDHGPGIPPDALEHI 441 >gi|149922767|ref|ZP_01911192.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149816387|gb|EDM75888.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 783 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 ++LLNL A ++PRGG + I + + ++ PE+ Sbjct: 666 QVLLNLLSNAVDAMPRGGTIRIRL-GEGEADTVIFAVSDEGMGIPEEI 712 >gi|16263071|ref|NP_435864.1| FixL-related histidine kinase [Sinorhizobium meliloti 1021] gi|14523729|gb|AAK65276.1| FixL-related histidine kinase [Sinorhizobium meliloti 1021] Length = 528 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 15/178 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78 + HD + + I +LE+++ ++++M L++ + +A +L LAFG Sbjct: 169 LAHDFNNLLTVITGNLEMIEARLQDEKLMPLLQEAQAAADDGAKLTAQLLAFGRRQPLNP 228 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVS------WTGEKIDLSRERAK-ILLNLFMVAHASLP 131 L+ +G++ + + + + + + +LNL + A ++P Sbjct: 229 KLVDVGELVTNFSKLLTRTLGETIELSTVVKGSANLALIDVSQLQNTVLNLGLNARDAMP 288 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN---VESTIDSHDIQFYYV 186 GG++TI V + + ++L + R V + + H + +Y Sbjct: 289 NGGRLTIEVSTTVLDRDYALML--PEVRMGHYVLVAVTDTGVGMTEEVKRHAFEPFYT 344 >gi|118579852|ref|YP_901102.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502562|gb|ABK99044.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 691 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 20/181 (11%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS-AIIR-LKFMRLAFGY 73 LL I HD + + AI ++ L + + L+ S + R L L F Sbjct: 331 LLAGGIAHDFNNLLAAIMGNISLASMLLQPGSRSVSLLAESEKACLRARDLTLQLLTFSK 390 Query: 74 TGS-VDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDLSRERAKILLNLFMV 125 G+ V L + I + F+ + W E + ++++ NL + Sbjct: 391 GGAPVRRLASVEQIVRESASFVVRGSGTFCNFHVANGLWQAEID--EGQISQVIHNLVIN 448 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185 A ++P GG +TI+ + + +L R +G + Y+ Sbjct: 449 AVQAMPHGGVITITCSN----VAAVTEGEADLVRID--IEDQGEGITPE-VLPRIFDPYF 501 Query: 186 V 186 Sbjct: 502 T 502 >gi|330963153|gb|EGH63413.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 468 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ + + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + D RV + + A + + NL Sbjct: 317 --DTDIHENIEQVDLNALLECLVEPWLTADGDGRVTQLGEAQAAYPGKPLALMRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|153003402|ref|YP_001377727.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026975|gb|ABS24743.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 659 Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 16/150 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMRLAFGY 73 + H++ +P+ + N+L +L+ ++ + + S L R++ G Sbjct: 299 LSHELRNPLAPMWNALGVLERPDASEDTSRRAQAVLQRQLAHLSRLVDDLLDLTRISRGK 358 Query: 74 TGSVDSLIGLGDI-EQVIED----FIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125 + +GL ++ + ED F + V + +S + ++ + NL + Sbjct: 359 IQLRPAPLGLTEVVRRAAEDHRPLFAEAGVALDVRLPDAPVPVSGDATRLTQIVGNLLLN 418 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A PRGG V + + + + + ++ G Sbjct: 419 AVKFTPRGGHVLLELTPGEKDALLRVRDTG 448 >gi|217969645|ref|YP_002354879.1| histidine kinase [Thauera sp. MZ1T] gi|217506972|gb|ACK53983.1| histidine kinase [Thauera sp. MZ1T] Length = 486 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 28/177 (15%) Query: 12 MDLVALLCSR------ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMS 59 + L L R + H++ +P+ ++ + LL++ + EV ++ S+ + Sbjct: 256 LRLAELEADRGRVLRHVSHELKTPLASLREGVALLEDGVLGPLEPEQREVTAILAHSART 315 Query: 60 AIIRL-KFMRLAFGYTGSVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKI 109 R+ + +RL D+ ++ + A +RV + G+ Sbjct: 316 LQARIEQLLRL---NASQFDARSLHLQPTALLPLLRKIGEEQRLPARARRVTIGLAGDAP 372 Query: 110 DLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + + K+ NL A A P GG + I ++ + + + G E Sbjct: 373 IVHADAGKLHSVFSNLLANAIAFSPTGGHIRIELRRAGENVVIDCRDEGPGIAPDEL 429 >gi|86138309|ref|ZP_01056883.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. MED193] gi|85824834|gb|EAQ45035.1| sensory box sensor histidine kianse/response regulator [Roseobacter sp. MED193] Length = 771 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 74/195 (37%), Gaps = 25/195 (12%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77 HD + + AI +LL + G +D LI+ ++ A + + LAF + Sbjct: 406 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAASLVSQL-LAFSRKQTLL 463 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130 ++ + D + + ++V ++ + + + S R+ ++L+NL + A ++ Sbjct: 464 PEVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 523 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQ-----FY 184 P GG++ + + + + A PE + + + I +Q FY Sbjct: 524 PNGGEIRVRTE----AVTLEKPLKRDRASVPEGNWITVKVSDEGVGIPPDKLQKVFEPFY 579 Query: 185 YVILLAHENKIRLLP 199 + L Sbjct: 580 TTKRTGEGTGLGLST 594 >gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 546 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 26/219 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSS----MSAIIRLKFMRL 69 S I H++ +P+ I E + + E +Q+I + L R+ Sbjct: 321 SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRI 380 Query: 70 AFGYTGSVDSLIGLGD-IEQVIEDFIAV-DKRVQVSWTGEKIDLS-----RERAKILLNL 122 A G S + L +++V+ F A R++ ++ NL Sbjct: 381 AAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDDMPPVYADYERLRQVFTNL 440 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVEST 175 A P GG + I + I + G P + ++ D + Sbjct: 441 IENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIG--IPPEEQDLIFERFYRVDNRLRRD 498 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ E L Sbjct: 499 RPGSGLGLYITRAIVEAHGGRIWVESQVGRGSRFLFTLP 537 >gi|158339446|ref|YP_001520623.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158309687|gb|ABW31304.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 496 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 30/211 (14%) Query: 24 HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLS-------SMSAIIRLKFMRLAFGYTG 75 H++ +PI + LEL+ D+ ++E ++L+ I K R F Sbjct: 287 HELRTPITIVRGHLELMGDDPKEQEETIELVLDELDRMGRLVNDMIALTKSERPDF---- 342 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKI---LLNLFMVAHAS 129 +I L + F W + + +R ++ LLNL A Sbjct: 343 LQYEMIDLNQFMDEL--FTKAQALADRDWQLQLNCSSSMMGDRQRLTGALLNLLRNATQH 400 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQF 183 P G + + + + ++ IF +K NG R ++F ++ D + Sbjct: 401 TPASGTIELGCKQTFSQVIFWVKDNGEGMTLEEQLRIFDRFARLGKRQS----DGSGLGL 456 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V ++ ++ E + L Sbjct: 457 AIVKAFTKAHRGKIDVESQPGRGSTFTITLP 487 >gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 969 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 64/214 (29%), Gaps = 24/214 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAI---------IRLKFM 67 + HD+ +P+ AI +L ED I S L+ Sbjct: 745 VSHDLRTPLSAIIMGARVLGGGAAEDPERVRATATRIASSGERMNRLIGDLLDLASLERG 804 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILLNLFMV 125 RL+ + S + + VI A K + V W + + +IL L + Sbjct: 805 RLSMRRSAHAPSTLAR-EAADVIRP-AAEAKGLDVRWRAADDLPLVPCDHDRILQVLGNL 862 Query: 126 AHASL--PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHD 180 ++ G V I ++ +F ++ G P F + G + Sbjct: 863 TSNAVKATASGHVAIGASARGDQVLFEVQDTGPGIPSEELPHVFDRFRRGR-SAAYAGTG 921 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + R+ E V+ L Sbjct: 922 LGLAIARALVEAHGGRIWAESTPGLGTVVRFSLP 955 >gi|115373919|ref|ZP_01461210.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1] gi|115369047|gb|EAU67991.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1] Length = 816 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 33/220 (15%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVM---QLIRLSSMSAIIRLK----F--MRLAF 71 + HD+ +P+GAI + LL G+ + + Q I S A ++ F RL Sbjct: 600 VSHDLRNPLGAITMAAGLLQASPGLSERQLKAAQRIASSCERATRLIRDLLDFTQARLGT 659 Query: 72 GYTGSVDSLIGLGDIEQVIED--FIAVDKRVQV---------SWTGEKIDLSRERAKILL 120 G + L D+ + + D + R W ++I A++L Sbjct: 660 GIP-LNRRPMDLHDVTRHVVDEVLLTHPGRHVQVESSGEGWGEWDPDRI------AQVLT 712 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTID 177 NL A A P V + + G P F + G Sbjct: 713 NLLGNALAYSPAHTPVRVRTLGEPEGARLEVHNQGTPIPAELLPRLFEPLTRGAPSENQP 772 Query: 178 SHDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I Y V + + + + + L + Sbjct: 773 NRSIGLGLYIVREILAGHGGTIEVASNEAAGTTFTVRLPR 812 >gi|91976178|ref|YP_568837.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682634|gb|ABE38936.1| cell cycle control histidine kinase CckA [Rhodopseudomonas palustris BisB5] Length = 850 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 15/157 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 MD + L I HD + + AI + + LL+ D Q I +A +R Sbjct: 464 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 523 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118 LAF ++ L + I+ + ++V ++ W + E+ Sbjct: 524 LAFSRKQTLRPQVLDLREALTDIDRLLKRLIGEKVTLTMPHGRDLWRVKADVSQFEQV-- 581 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++NL + A ++P GGK+TI + + L G Sbjct: 582 IVNLAVNARDAMPDGGKLTIRTCNVTAADAAQLAHKG 618 >gi|331091535|ref|ZP_08340372.1| hypothetical protein HMPREF9477_01015 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403700|gb|EGG83254.1| hypothetical protein HMPREF9477_01015 [Lachnospiraceae bacterium 2_1_46FAA] Length = 505 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 15/171 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLI-----RL 55 L L A L I HD+ SP+ +I + E L +E ++ E Q I Sbjct: 268 SESEMRLEKERLRANLLRSISHDLRSPLTSISGNAENLMTNETKLKQEKRQKIYQDIYDD 327 Query: 56 SS---MSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 S L R+ G ++ + IE+ ++ K+ ++ E+I + Sbjct: 328 SVWLINLVENLLSVTRIENGTMELNIQGEVAEEVIEEALKHINRRGKQQKIMIDCEEILI 387 Query: 112 SRERAKILL----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++ K++ NL A P+G ++ + + ++ +F +K NG Sbjct: 388 AKMDVKLIFQVLINLVDNAVKYTPKGAEIVVGAKKCGDKVVFFVKDNGQGL 438 >gi|192292771|ref|YP_001993376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286520|gb|ACF02901.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 880 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 MD + L I HD + + AI + + LL+ D Q I +A +R Sbjct: 494 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 553 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID-LSRERA----KILL 120 LAF ++ LG+ I+ + +++ + + ++ ++++ Sbjct: 554 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKISLEMQHGRDLWRTKADVSQFEQVIV 613 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL + A ++P GGK+TI + L NG Sbjct: 614 NLAVNARDAMPDGGKLTIRTANVTASEAAQLGHNG 648 >gi|169125729|gb|ACA48227.1| LipQ [Pseudomonas alcaligenes] Length = 984 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 21/177 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 + S L ++ L + + H+I +P+ I + L E DE + I + R+ Sbjct: 749 VHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREEREGDEELGEISNQILDQTKRIS- 807 Query: 67 MRLA-----FGYTGSVDS---LIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRER 115 R+ F + G + L ++ Q + VQ + L++ Sbjct: 808 -RIVQSLMNFAHAGQQQRAEYPVSLAEVAQDAIGLLSLNRHGTEVQFYNLCDPEHLAKGD 866 Query: 116 ----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 A++L+NL A + P GG + + + + + ++ G P+ + Sbjct: 867 PQRLAQVLINLLSNARDASPAGGAIRVRSEAEEQSVVLIVEDEGTG--IPQAIMDRL 921 >gi|220922552|ref|YP_002497854.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947159|gb|ACL57551.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 766 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 21/143 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + + SL++L + +D ++ + ++ A R L F R Sbjct: 404 HDFNNLLSVVLASLDVLKKRLPDDPKLRRLLDNAEQATQRGAALTQRMLAFAR----RQH 459 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--------LLNLFMVAH 127 + L + + D + V + LS LLNL + A Sbjct: 460 LKPQAVDLASLVHGMSDLLQRSLGPTVQIE-TRFPLSLPVVMADAHQLELALLNLSVNAR 518 Query: 128 ASLPRGGKVTISVQDSKNENIFS 150 ++P+GG +TIS + + Sbjct: 519 DAMPKGGAITISACEGDQPSDLG 541 >gi|118581413|ref|YP_902663.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118504123|gb|ABL00606.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 953 Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 26/202 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + + FN +D + LL I HD + + +I ++ L E + ++ + A Sbjct: 569 MEEEL-FNARKLDSIGLLAGGIAHDFNNLLTSILGNISLTRMQVGEGDRLRRNLDEAEKA 627 Query: 61 IIR--------LKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 +R L F R G + L I + F R + Sbjct: 628 SLRAKDLTQQLLTFSR------GGAPVRKTVSLTAIIRDSATFTLSGSRTTCRFQIPDDL 681 Query: 111 LS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKF 164 + ++++ NL + A ++P GG++ I + L + G R Sbjct: 682 YPVDVDEGQFSQVINNLVLNADQAMPAGGEIEIVCANVTLARESHLPLPAGAYVRIS--- 738 Query: 165 TQIVDGNVESTIDSHDIQFYYV 186 + + + Y+ Sbjct: 739 VRDRGEGIPEELVPRIFDPYFT 760 >gi|311107427|ref|YP_003980280.1| sensory box protein 8 [Achromobacter xylosoxidans A8] gi|310762116|gb|ADP17565.1| sensory box protein 8 [Achromobacter xylosoxidans A8] Length = 397 Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 19/148 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 + HD + I I + ELL + E + I ++ A + M LA+ Sbjct: 171 LAHDFNNFISVIDGAAELLRNPELAPEKRVKYLNAIADTAQRATHLTQQM-LAY--ARRQ 227 Query: 78 DSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 D+ + + + + RVQ + + + +++ LLNL + A Sbjct: 228 PLEPSQVDVGLCIEGMKPIFQATLGAAVRVQYQLPDDPCLICADVSQLENALLNLVVNAA 287 Query: 128 ASLPRGG--KVTISVQDSKNENIFSLKI 153 ++P GG ++ +S DS+ + L Sbjct: 288 DAMPFGGNVRIAVSCVDSRPDEQGGLAA 315 >gi|302187742|ref|ZP_07264415.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 676 Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P GG + + + + + F+ Sbjct: 431 RDAMPDGGTLVVETSNQQLDRSFT 454 >gi|153007213|ref|YP_001381538.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030786|gb|ABS28554.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 667 Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 25/227 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLK 65 L + L AL L + I H++ +P+ AI L +L ++G +LI + A + Sbjct: 437 LRTRRLAALGSLGAGIAHELNNPMTAITGYLAILRKQLGPASPQGELISHAQEQAA---R 493 Query: 66 FMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113 R+ A + L + D R ++ + D Sbjct: 494 VARVIEDLRSFADQERAAQGQRFSLVRPVRAAVDLYEDRLRAAGIEVRIRFDEPLPDTQG 553 Query: 114 ERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVD 169 + ++ + +L A ++P+GG + +SV S + + L++ P + +I D Sbjct: 554 DPVQLQQVVAHLVENAINAMPQGGVLEVSV-GSIDGDALRLRVADTGKGIPSQLRERIFD 612 Query: 170 GNVESTIDSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + ++ ++L E + ++ LL Sbjct: 613 PFFTTKDQAGRVGLGLSVSHSIVEAHRGKILVESEEGTGSAITVLLP 659 >gi|218673213|ref|ZP_03522882.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli GR56] Length = 498 Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 17/172 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 I HD + + A+ SLE+L + +D + L+ + A L LAF + + Sbjct: 135 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 192 Query: 79 SLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128 + D+ ++ + + R I + ++ +LNL + A Sbjct: 193 LHMEPIDVSGLVRGMMDILSRSLGPLTTIETSYPVRLPTILTDPNQLEMAILNLVVNARD 252 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178 ++P GG++T+ + G R ++ + +E + Sbjct: 253 AMPAGGRITLRASEESIAAGKGPLSAGRYIRIAVIDEGEGMDAKTLEQAVTP 304 >gi|306841845|ref|ZP_07474527.1| Nitrogen regulation protein ntrB [Brucella sp. BO2] gi|306288072|gb|EFM59469.1| Nitrogen regulation protein ntrB [Brucella sp. BO2] Length = 380 Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + + A R + + R ++ L Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L+++G R P +F +G V Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVSGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|108797688|ref|YP_637885.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119866776|ref|YP_936728.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|126433313|ref|YP_001069004.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] gi|108768107|gb|ABG06829.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119692865|gb|ABL89938.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|126233113|gb|ABN96513.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] Length = 344 Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 30/227 (13%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 +S LVA + HD+ +P+ I E + + + + ++ I Sbjct: 105 SERAAEMSRRQLVAFVS----HDLRTPLAGIRAVSEAIADGLVGGDEVRAHAKHIEQESI 160 Query: 63 RL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLS- 112 RL ++ G+V +++V++D +A +R V E D Sbjct: 161 RLSEMVDDLFEMSKINAGAVQPTFDRVALDEVVDDVLAAHRIAAERAGVQLRAELPDEPV 220 Query: 113 ------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEK 163 R ++L NL A A P GG+V +++ +N + G + A P Sbjct: 221 RVLGSDRALVRVLSNLVANAIAHTPEGGRVQLALGSDENVAWARVDDTGVGIDEADLPRV 280 Query: 164 FTQIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIID 203 F G+ + S + L ++ L +D Sbjct: 281 FDVAYRGSNDRVPREDSSLPSGSGLGLAIAAGLVQAHRGTLSAHNLD 327 >gi|260575598|ref|ZP_05843596.1| histidine kinase [Rhodobacter sp. SW2] gi|259022241|gb|EEW25539.1| histidine kinase [Rhodobacter sp. SW2] Length = 767 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 23/155 (14%) Query: 22 ICHDIISPIGAIHN--SLELLDEVGIEDEVMQL--IRLSSMSAIIR----LKFMRLAFGY 73 I HD + + AI L LL V + E L I ++ A L F R Sbjct: 405 IAHDFNNLLTAISGHCDLLLLRHVQADPEYADLVQIHQNANRAASLVGQLLAFSR----K 460 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126 + L ++ + + +RV + R+ ++++NL + A Sbjct: 461 QTLKPERLDLQEVLSDLTHLLNRLVGERVNLRLAHAPDLGPIRADKRQLEQVVMNLVVNA 520 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++P GG + I ++ + A P Sbjct: 521 RDAMPEGGTIRI----ETEALTLRDELRRDRAVVP 551 >gi|330898374|gb|EGH29793.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 417 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 51 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 108 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I V+ V ID + LLNL + Sbjct: 109 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 167 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++PRGG++TI + +E + + G I+ F+ Sbjct: 168 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 227 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 228 TTKPLGQGTGLGLS 241 >gi|256422971|ref|YP_003123624.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037879|gb|ACU61423.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 475 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 15/153 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMRL 69 L S I HD+ SP+ +I +L L+ E +E+E + L + +S L + +L Sbjct: 247 LFSIIAHDLQSPLNSIITTLHLIAEYDLEEEEKKMLGDELLTLTKNTSSLLTNLLTWSKL 306 Query: 70 AFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKID---LSRERAKILL-NL 122 G S + + + I+ +A K V ++ + ++++ NL Sbjct: 307 QMDGKGVRLSAENVHEAVERVLTIQRLLAEKKAVSITSRVDPDVYITADHNMLELIIRNL 366 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 A P GG++ I ++ + + NG Sbjct: 367 VNNAIKFTPSGGQIAIDIRLIEEYCHLMISDNG 399 >gi|167032027|ref|YP_001667258.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida GB-1] gi|166858515|gb|ABY96922.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida GB-1] Length = 484 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 38/218 (17%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 + L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K + Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + L + +++ + D R+ V + A + + NL Sbjct: 341 -----HENLEPVDLNQVLEILAEPYLRDGRITVDGRALAPYPGKPLALRRCIGNLI---D 392 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182 ++ G + + + DS + + G + +E + H Q Sbjct: 393 NAIKYGERARLRIIDSAEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443 Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + ++ L + Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481 >gi|254462821|ref|ZP_05076237.1| sensor histidine kinase [Rhodobacterales bacterium HTCC2083] gi|206679410|gb|EDZ43897.1| sensor histidine kinase [Rhodobacteraceae bacterium HTCC2083] Length = 439 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 66/199 (33%), Gaps = 19/199 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74 ++ S + HD+ +P+ + L +L++ E + L +F+ A G Sbjct: 236 TMMLSGVSHDLRTPLTRLKLGLSMLEDEDREP-----LERDVEDMRRLLDEFLNFASGSA 290 Query: 75 GSVDSLIGLGDIEQVI-EDFIAVD---KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 L + Q+ ED + ++ K ++V + + L NL ++ Sbjct: 291 EGEQELSDPARLTQLAIEDAVRMEMAVKMLKVEAGPHVMLNPLSMRRALDNLI---GNAV 347 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFY 184 G +SV ++ F ++ +G + F ++ + + Sbjct: 348 RYGTLAQVSVLRTEKTVTFRVEDDGPGLAEDLYGAAVKPFVRLDPARNQDKGTGVGLGLA 407 Query: 185 YVILLAHENKIRLLPEIID 203 +A + L D Sbjct: 408 ITNDIARAHGGSLRFSKSD 426 >gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 776 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 21/199 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGY 73 + H++ +P+ + N LE+L D + R + L+ R+ G Sbjct: 422 LAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGK 481 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL-----SRERAKILLNLFMV 125 + L Q + + +S T + L ++++LNL Sbjct: 482 LELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNN 541 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDSHD 180 A P GG ++++ + +E + ++ +G + ++ + Sbjct: 542 AAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLG 601 Query: 181 IQFYYVILLAHENKIRLLP 199 I V LA + + Sbjct: 602 IGLALVRGLAELHGGTVAA 620 >gi|300022124|ref|YP_003754735.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299523945|gb|ADJ22414.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 630 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 14/172 (8%) Query: 3 KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62 + L ++ V L I HD + + I +LELL+ + +L+ + +A Sbjct: 248 RESSLRLQKLEAVGQLTGGIAHDFNNLLTIISGNLELLEGTIENPDDRELLSRAMRAADS 307 Query: 63 RLKFMRLAFGYTGS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLSRERA 116 + R + +I L + + + + + + + L+R A Sbjct: 308 GARLTRRLLTFARRRQLAPEVINLNEQVRSMTELLHRTLGATIDLQTSFARDLWLTRADA 367 Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSL-KINGNLARF 160 ++NL + A ++P GGK+ I + +E F + G+ R Sbjct: 368 GEVESAVINLAINARDAMPNGGKLAIRTSNAALEGDEVGFEGPLVAGDYVRV 419 >gi|148265761|ref|YP_001232467.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146399261|gb|ABQ27894.1| integral membrane sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 367 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 22/219 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK-FM 67 +L A+L H+I +P+G+I + E+L + E ++++ + ++ F+ Sbjct: 153 ELSAVLA----HEIRNPLGSIKGTAEILKDSFRPGESNYEFLEILLKETDRLNRVVEDFL 208 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERAK-ILLN 121 LA + + ++ +++ VS +L RE+ + LN Sbjct: 209 GLARPLQVERATCDIMAELNEIVTLISTEAAARGVSIELNPAELPAVHGDREKLRQAFLN 268 Query: 122 LFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 L M + RGGK+T+S ++S S G P++ +I + + Sbjct: 269 LLMNGLQATGRGGKLTVSASCPGPAEESPAVVELSFADTGEGI-EPDRLNRIFEPFFTTK 327 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + + + + L Sbjct: 328 PDGTGLGLAITQKIVESHGGSIQVASEKGKGTTFTVRLP 366 >gi|90421890|ref|YP_530260.1| GAF sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103904|gb|ABD85941.1| GAF sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 618 Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 26/220 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 + HD+ + + I ++E+L + + I A +R L F R + Sbjct: 240 LAHDLNNILTVISGTIEILAAAVADRPQLAAIAKMIDEAAVRGAELTQRLLAFARKQPLH 299 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDL-SRERAKILLNLFMVAHASL 130 ++D + + ++ + ++ + + + +LNL + A S+ Sbjct: 300 PRAIDVNALIVEATNLLRPTLGDHITLVTTLAGELSRALIDPGQLTNTILNLALNARDSM 359 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL-- 188 P GG+V+I+ +D + + + + + + I + ++ Sbjct: 360 PEGGEVSITTRDIVLDASAAAANELDAGSYVLVAVGDSGHGIPADILPRVFEPFFTTKDV 419 Query: 189 -------------LAHENKIRLLPEIIDDHNVVLSALLEK 215 ++ ++ E + DH ++ LL + Sbjct: 420 GKGSGLGLSMVYGFVKQSNGHVVIESVPDHGTTVTMLLPQ 459 >gi|254704407|ref|ZP_05166235.1| Nitrogen regulation protein ntrB [Brucella suis bv. 3 str. 686] gi|261755084|ref|ZP_05998793.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|261744837|gb|EEY32763.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686] Length = 380 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + + A R + + R ++ L Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MPPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|315498130|ref|YP_004086934.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315416142|gb|ADU12783.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 506 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 14/160 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIRLKF 66 + A+L S + HD +P+ I +LE L E ++ E ++ A + ++ Sbjct: 276 MSAMLSS-LSHDFKTPLVGIVGALEAL-EGRVDSEARDIVADGLAEALRLNRYVVNLVEI 333 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILLNLFM 124 RL G + L I V+ + R + T E L+ + L L Sbjct: 334 SRLEAGVRPRSEPLHIRDAISGVLRTLRPLIGRQKFRITVEAGFPLLNLNASLFDLVLLN 393 Query: 125 VAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFP 161 + +L G G++TI + + + + G P Sbjct: 394 LIENALKYGPAEGEITIDARVTSDSVEIDVDDEGAGIPPP 433 >gi|307825998|ref|ZP_07656212.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307732973|gb|EFO03836.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 619 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 31/166 (18%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSMSAI----IRL 64 + +A+L H++ +P+ I N+ +LD + +ED + ++I+ M L Sbjct: 239 EFLAMLA----HELRNPLAPISNAAHILDMLKLEDPRLSWAKEIIKRQVMHLTHLVDDLL 294 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKIDLSRERAKI- 118 R+A G + L ++ + + D +A + + V + I L + ++ Sbjct: 295 DISRIARGKISLKKERLDLVEVIKSVLDTARGPILAKQQHLDVHLPEQPILLEGDSVRLS 354 Query: 119 --LLNLF-----------MVAHASLPRGGKVTISVQDSKNENIFSL 151 LLNL + G +V I V+D+ L Sbjct: 355 QVLLNLLDNAGKYSLENAQIEVDVQLYGTEVEIQVRDNGTGISAGL 400 >gi|226227949|ref|YP_002762055.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226091140|dbj|BAH39585.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 540 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 23/170 (13%) Query: 22 ICHDIISPIGAI----HNSLELLDEVGIED------EVMQLIRLSSMSAIIRLK----FM 67 + HD+ +P+ A+ L G ED E ++ IR ++ ++ Sbjct: 322 VSHDLRNPVNAVVMLTGAVLSRETPAGAEDVGIMGREEVEAIRGAARQVDGLIQDLQDVS 381 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERA-KIL 119 R++ G + ++ + D A+D + R R ++L Sbjct: 382 RISAGRLRVERRPVPAVEMLKEAADVFDPVVAEAALDFTRTFDDDAPLVMADRHRVGQVL 441 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 NL A PRGG V+++ Q + +++ G PE ++ + Sbjct: 442 SNLLGNAVRFTPRGGSVSLTAQRQDDMLRIAVRDTGPGV-APEDVPRLFE 490 >gi|26989125|ref|NP_744550.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida KT2440] gi|24983959|gb|AAN68014.1|AE016434_5 sensor histidine kinase, putative [Pseudomonas putida KT2440] Length = 428 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 27/197 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ-LIRLSSMSAIIRLKFMRL 69 LL + I HD+ +PI + +E++DE G + + M+ L+R A Sbjct: 228 LLAA-ISHDLQTPITRMKLRVEVMDEGVERDKFGSDLDEMEHLVREGVAYARS------- 279 Query: 70 AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 + + L ++ ++ D+ +V+ + + + +R A ++L+NL Sbjct: 280 -MDSSTEATCRVNLDAFLDSLVFDYQDSGAQVERHGSSDTLLETRPHALRRVLVNLV--- 335 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDI 181 +L G + V + I + NG E + V+G+ + + Sbjct: 336 DNALKFAGAAELQVSREGSTTIIRVLDNGPGIPVDELDEVLKPFYRVEGSRNRSTGGTGL 395 Query: 182 QFYYVILLAHENKIRLL 198 L RL Sbjct: 396 GLAIAHQLIRAMGGRLT 412 >gi|237800710|ref|ZP_04589171.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023569|gb|EGI03626.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 555 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 17/144 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ L I L SA L LAF S Sbjct: 186 IAHDFNNMLTGIIGSLELIRRRVARGRTEDLDSLIDLGVTSANRAAALTHRLLAFSRRQS 245 Query: 77 VD-------SLIGLGD--IEQVIEDFIAVDKRVQVS-WTGEKIDLSRERAKILLNLFMVA 126 +D L+ D +++ + + I + R+ WT E + LLNL + A Sbjct: 246 LDSKPVEMNQLVDSMDELLQRSVNESIHLQLRLANDLWTAEAD--PNQLENALLNLVLNA 303 Query: 127 HASLPRGGKVTISVQDSKNENIFS 150 ++P GG + + + + + F+ Sbjct: 304 RDAMPDGGTLVVETFNQQLDKSFT 327 >gi|220913623|ref|YP_002488932.1| histidine kinase [Arthrobacter chlorophenolicus A6] gi|219860501|gb|ACL40843.1| histidine kinase [Arthrobacter chlorophenolicus A6] Length = 553 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 17/211 (8%) Query: 22 ICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKF----MRLAFGYTGS 76 + H++ +P+ +I L + +DE G++ E+ + ++ +A L + +A G Sbjct: 331 VSHELRTPLTSILGYLSIAMDEEGLDPELEHCLEVAKRNAERLLNLVADLLTIASGTLTV 390 Query: 77 VDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHAS 129 L ++ D A V +S E R + + NL A Sbjct: 391 RPRQADLAEVAAQSVDAAQPRAASGGVTLSLETEGPAPGRFDPDRLGQAIDNLVSNAIKY 450 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFY 184 PRGG VT+ V+ + + G + S I + Sbjct: 451 TPRGGVVTVRVRTEDGRLVCEVADTGVGMTDQDLANAFTRFFRTATAHSSAIPGAGLGLA 510 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ + + L + Sbjct: 511 ITRSIIENHRGSVTLASSHGEGTTATLTLPE 541 >gi|171910825|ref|ZP_02926295.1| two-component hybrid sensor and regulator [Verrucomicrobium spinosum DSM 4136] Length = 772 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 38/194 (19%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + + I S+ LL +E V+ ++ S+ +K F R T Sbjct: 408 IAHDLNNVLTPIVMSITLLRAGETSEEKLAVLDMVEKSANRGAQLIKQVLTFARGVESRT 467 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129 V + L ++E++ + +++V W + ++LLNL + A + Sbjct: 468 VVVQLRLLLYEVEKICSETFLKSIQIRVKSAPDLWPVLGD--PTQLHQVLLNLCVNARDA 525 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189 + GG +T+ + E + YV+L Sbjct: 526 MHHGGTLTLQA---------------DNVVLDEHYAATSVEAKPGP---------YVVLQ 561 Query: 190 AHENKIRLLPEIID 203 + + PE+ID Sbjct: 562 VSDTGAGMSPEVID 575 >gi|114571289|ref|YP_757969.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341751|gb|ABI67031.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 543 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 10/131 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFGYT 74 + S + HD + + AI+ S LL +DE+M I S A + + + F T Sbjct: 160 MASSVAHDFANILTAINASARLLRNSNTSPKDELMFDRIVTSCRQANDLVDDL-VTFDAT 218 Query: 75 GSVDSL-IG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128 ++ I + D+ +++ + + R++++ + E++ A+++ NL A Sbjct: 219 PVREARAIDEIVRDVAEMMSNQFSAPYRLELAASDERLVCETDPTLFARLVANLLKNARE 278 Query: 129 SLPRGGKVTIS 139 +L GG VT+ Sbjct: 279 ALGPGGTVTVR 289 >gi|66044363|ref|YP_234204.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a] gi|63255070|gb|AAY36166.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 483 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 281 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 331 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + + RV + + A + + NL Sbjct: 332 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 389 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + F L ++ PE+ + V + + Q Sbjct: 390 ---DNALKYGDRAHLKVED--DARAFVLHVDDEGPGVPEQRLEHVF-EPHFRLAGNQQQG 443 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 444 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 480 >gi|20141027|sp|Q9APE0|ZRAS_KLEOX RecName: Full=Sensor protein zraS gi|12584124|gb|AAG59806.1|AF305914_1 HydH [Klebsiella oxytoca] Length = 462 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA-------I 61 LVAL L + + H+I +P+ +I L + + E QL + + A Sbjct: 237 KLVALGHLAAGVAHEIRNPLSSIK-GLAKYFAERTPADGEAHQLALVMAREADRLNRVVS 295 Query: 62 IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL-----SR 113 L+ +R + L ++ ++ D + +++T + Sbjct: 296 ELLELVR----PAHLKYQSVDLNEVITHSLQLVSQDAASRAISLTFTAQPALCRIQADPD 351 Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173 ++LLNL++ A ++ R G +T++V++ + + + E+ I Sbjct: 352 RLKQVLLNLYLNAVHAIGREGVITVAVRECGDGRVKVSVADSGKGMTAEQLQAIFTPYFS 411 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + D + V + ++ + E + + L Sbjct: 412 TKADGTGLGLAVVQNIVEQHGGTIDAESAPGKGALFTFYLP 452 >gi|22127155|ref|NP_670578.1| sensory histidine kinase CreC [Yersinia pestis KIM 10] gi|45443326|ref|NP_994865.1| sensory histidine kinase CreC [Yersinia pestis biovar Microtus str. 91001] gi|51597481|ref|YP_071672.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis IP 32953] gi|108806371|ref|YP_650287.1| sensory histidine kinase CreC [Yersinia pestis Antiqua] gi|108813254|ref|YP_649021.1| sensory histidine kinase CreC [Yersinia pestis Nepal516] gi|145597927|ref|YP_001162003.1| sensory histidine kinase CreC [Yersinia pestis Pestoides F] gi|150260094|ref|ZP_01916822.1| putative histidine kinase sensor [Yersinia pestis CA88-4125] gi|162418816|ref|YP_001608151.1| sensory histidine kinase CreC [Yersinia pestis Angola] gi|165925117|ref|ZP_02220949.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. F1991016] gi|165937318|ref|ZP_02225882.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. IP275] gi|166010393|ref|ZP_02231291.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. E1979001] gi|166212790|ref|ZP_02238825.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. B42003004] gi|167399736|ref|ZP_02305254.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419041|ref|ZP_02310794.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425420|ref|ZP_02317173.1| sensor protein CreC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467690|ref|ZP_02332394.1| sensor protein CreC [Yersinia pestis FV-1] gi|218928068|ref|YP_002345943.1| sensory histidine kinase CreC [Yersinia pestis CO92] gi|229840804|ref|ZP_04460963.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842637|ref|ZP_04462792.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis str. India 195] gi|229903710|ref|ZP_04518823.1| putative histidine kinase sensor [Yersinia pestis Nepal516] gi|270487489|ref|ZP_06204563.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|294502938|ref|YP_003567000.1| putative histidine kinase sensor [Yersinia pestis Z176003] gi|21960217|gb|AAM86829.1|AE013929_2 catabolite repression sensor kinase for PhoB [Yersinia pestis KIM 10] gi|45438195|gb|AAS63742.1| putative histidine kinase sensor [Yersinia pestis biovar Microtus str. 91001] gi|51590763|emb|CAH22408.1| Putative histidine kinase sensor, CreC familly [Yersinia pseudotuberculosis IP 32953] gi|108776902|gb|ABG19421.1| histidine kinase sensor [Yersinia pestis Nepal516] gi|108778284|gb|ABG12342.1| putative histidine kinase sensor [Yersinia pestis Antiqua] gi|115346679|emb|CAL19562.1| putative histidine kinase sensor [Yersinia pestis CO92] gi|145209623|gb|ABP39030.1| histidine kinase sensor [Yersinia pestis Pestoides F] gi|149289502|gb|EDM39579.1| putative histidine kinase sensor [Yersinia pestis CA88-4125] gi|162351631|gb|ABX85579.1| sensor protein CreC [Yersinia pestis Angola] gi|165914792|gb|EDR33405.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. IP275] gi|165923317|gb|EDR40468.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. F1991016] gi|165990879|gb|EDR43180.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. E1979001] gi|166206082|gb|EDR50562.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. B42003004] gi|166963035|gb|EDR59056.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050444|gb|EDR61852.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055820|gb|EDR65604.1| sensor protein CreC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679480|gb|EEO75583.1| putative histidine kinase sensor [Yersinia pestis Nepal516] gi|229690947|gb|EEO83001.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis str. India 195] gi|229697170|gb|EEO87217.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis str. PEXU2] gi|262360973|gb|ACY57694.1| putative histidine kinase sensor [Yersinia pestis D106004] gi|270335993|gb|EFA46770.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|294353397|gb|ADE63738.1| putative histidine kinase sensor [Yersinia pestis Z176003] gi|320014029|gb|ADV97600.1| putative histidine kinase sensor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 472 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 23/153 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ SP+ AI + ELL E + + LI R++ + ++S + Sbjct: 265 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 322 Query: 83 LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L + + V K V + L ++ L NL Sbjct: 323 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALNNLIDN 379 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG++++S + + + +++ +G+ Sbjct: 380 ALDFTPAGGEISVSGERQDDTYLITVEDSGSGI 412 >gi|318607028|emb|CBY28526.1| two-component response regulator CreC [Yersinia enterocolitica subsp. palearctica Y11] Length = 230 Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 25/154 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLK--------FMRLAFGYT 74 H++ SP+ AI + ELL E + + LI R++ RL Sbjct: 20 HELKSPLAAITGAAELLRESPLPATAQRFLIN--IEQQSARIQQLVDKMLIQARL----E 73 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124 VD + +I +I+ + + VS + + A + L NL Sbjct: 74 SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTNLID 133 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG+VT+S +E + +++ G+ Sbjct: 134 NALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGI 167 >gi|189459479|ref|ZP_03008264.1| hypothetical protein BACCOP_00103 [Bacteroides coprocola DSM 17136] gi|189433731|gb|EDV02716.1| hypothetical protein BACCOP_00103 [Bacteroides coprocola DSM 17136] Length = 802 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 16 ALLCSR------ICHDIISPIGAIHNSLEL-LDEVGIEDEVM--QLIRLSSMSAII---- 62 L+ SR + HD+ SP+ AI + EL L + E + + IR S+ Sbjct: 326 ELIKSRQNIMQTVTHDLRSPLTAIRGNAELILKDGNREATALHAEHIRQSAERMGALMEN 385 Query: 63 --------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108 R+K RLA G ++++ E+ +E V+ G++ Sbjct: 386 LLDYYRIDNGKETVRVKPFRLA-GVAETLETEFAARMEEKRLE--FRVNNAADEVVMGDR 442 Query: 109 IDLSRERAKILLNLF------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + R + +L N V +L GGK T++V+D+ + + Sbjct: 443 NLILRIGSNLLSNALKFTERGGVTLTALYAGGKFTLAVEDTGGGID-----KDKREQIFK 497 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 F ++ + +T D + V LA + + E I + S +L Sbjct: 498 PFERLSN---AATQDGFGLGLSIVKSLAELMEGSISVENIRNTGSRFSVVLP 546 >gi|288919106|ref|ZP_06413446.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288349546|gb|EFC83783.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 778 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 23/176 (13%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 LDE + D + +R +S A L F R + + L D+ + +E + Sbjct: 298 LDEGVLRD--LAAVREASGRAAGLTSQLLAFSR----TSDVRPGPVDLNDLVRGLEGMLR 351 Query: 96 VDKRVQVSWTGEKIDLSRERAKI--------LLNLFMVAHASLPRGGK--VTISVQDSKN 145 R + +I L+NL + + ++P GG+ + + + D Sbjct: 352 RLIREDIE-LVVMPAHRAAMVRIDRGKLEQVLVNLVVNSRDAMPEGGRLFIRVDIADDTT 410 Query: 146 ENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY-VILLAHENKIRLLP 199 + + G LAR + T G + + + + +Y L + L Sbjct: 411 PELGFSVLRGALARPFVRLTVADTGHGMTDDVRARIFEPFYTTKALGRGTGLGLAT 466 >gi|218289376|ref|ZP_03493610.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218240482|gb|EED07663.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 527 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 23/214 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRL-KFMRLAFGY---- 73 H++ +P+ A+ LE+L + G E +Q + + + + +RLA Sbjct: 305 HELRTPLTALSGYLEVLQKGGDFTDEEWREALQQMHGEARRLAGLVDQMLRLARAEDVRA 364 Query: 74 --TGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126 G + LG + ++ + + + G+ + A ++L NL A Sbjct: 365 SWAGDKRERVRLGTLVMSLDALWRGLCGSRELTYRIEGDPAVFADPDALKQVLFNLVQNA 424 Query: 127 HASLPR-GGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV--DGNVESTIDSHD 180 P GG++ ISV E ++ NG P F + D Sbjct: 425 VQHTPEEGGEIAISVWTDGCEAKLAVADNGTGIPKVHQPHVFERFYRVDEARSRAKGGAG 484 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + R+ E V + L Sbjct: 485 LGLAICKAIVEAHGGRIACESEPGEGAVFTVTLP 518 >gi|158523273|ref|YP_001531143.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512099|gb|ABW69066.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 639 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 11/132 (8%) Query: 18 LCSRICHDIISPIGAI-HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYT 74 L S I HD + + I N+ L ++ ED++ ++R +A R LAF Sbjct: 272 LASGIAHDFNNLLTTIIGNADFALMDLKPEDDLHDVVREIKDAADRAANLTRQLLAFSRR 331 Query: 75 GSVDSL-----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVA 126 S L D E++I I + ++++ + + + ++++NL + A Sbjct: 332 QSCHPEELSLNTKLQDTEKMIRRLIGENIELELALASDAARVEMDPGQLDQVIMNLVVNA 391 Query: 127 HASLPRGGKVTI 138 ++P GGK+TI Sbjct: 392 RDAMPDGGKLTI 403 >gi|310817906|ref|YP_003950264.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390978|gb|ADO68437.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 807 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 33/220 (15%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVM---QLIRLSSMSAIIRLK----F--MRLAF 71 + HD+ +P+GAI + LL G+ + + Q I S A ++ F RL Sbjct: 591 VSHDLRNPLGAITMAAGLLQASPGLSERQLKAAQRIASSCERATRLIRDLLDFTQARLGT 650 Query: 72 GYTGSVDSLIGLGDIEQVIED--FIAVDKRVQV---------SWTGEKIDLSRERAKILL 120 G + L D+ + + D + R W ++I A++L Sbjct: 651 GIP-LNRRPMDLHDVTRHVVDEVLLTHPGRHVQVESSGEGWGEWDPDRI------AQVLT 703 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTID 177 NL A A P V + + G P F + G Sbjct: 704 NLLGNALAYSPAHTPVRVRTLGEPEGARLEVHNQGTPIPAELLPRLFEPLTRGAPSENQP 763 Query: 178 SHDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + I Y V + + + + + L + Sbjct: 764 NRSIGLGLYIVREILAGHGGTIEVASNEAAGTTFTVRLPR 803 >gi|302341478|ref|YP_003806007.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638091|gb|ADK83413.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 482 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 27/173 (15%) Query: 18 LCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQL---IRLSSMSAII----RLKF 66 L S + H++ +P+ I S LE LD +++ +L I A L+F Sbjct: 265 LTSGVAHELNNPLNNISTSTQILLEELDSPDLQEYHRELLAAIEQQVAKAKDIVGSLLEF 324 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKI---DLSRER-AK 117 R + D+ VI++ + + +VQV D+ + + Sbjct: 325 AR-------QREFEPSRHDLRAVIDETLKLIKGEIPAQVQVEVDAPAGIVMDMDKAHIVQ 377 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 L+NL + A ++ G+++I + ++ E + + PE +I D Sbjct: 378 ALINLIINAIQAMDGAGRLSILARLAEGETVRLELTDSGSGIAPEVLPRIFDP 430 >gi|260430627|ref|ZP_05784600.1| sensor histidine kinase [Citreicella sp. SE45] gi|260418656|gb|EEX11913.1| sensor histidine kinase [Citreicella sp. SE45] Length = 457 Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 43/224 (19%) Query: 24 HDIISPIG--------AIHN-------SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 HD+ SP+G A+ LE L + E E M++I S L+ R Sbjct: 244 HDLKSPLGRAYLSLGKAMEKVEAGEDPGLE-LADTQDELEAMRVIFDSY------LQLSR 296 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKIL---- 119 + G G + + + L + + + A + + + + R A++L Sbjct: 297 IEAGGDGLLTADVDLAALAGDLAETFALIAEDAGQTLTFTVEAGQDYGIRGDAQMLQQMV 356 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVE 173 +NL A P G ++T + S +F++ G + R E F ++ + Sbjct: 357 VNLLQNAVTHGPEGNRITAGLGRSDGRVLFTVADCGPGIPQASMQRVFEPFHRL---DPS 413 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV---LSALLE 214 + + V +A + + +V L AL+ Sbjct: 414 RSKPGSGLGLALVRAIAERHNGAVTLRNAKPGLIVEVSLPALVP 457 >gi|330953860|gb|EGH54120.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae Cit 7] Length = 685 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 319 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 376 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I V+ V ID + LLNL + Sbjct: 377 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 435 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++PRGG++TI + +E + + G I+ F+ Sbjct: 436 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 495 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 496 TTKPLGQGTGLGLS 509 >gi|298292579|ref|YP_003694518.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296929090|gb|ADH89899.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 769 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 19/140 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + + +LEL + D +Q + +++ A R L F R Sbjct: 394 IAHDFNNLLAVVLGNLELAAKRAPSDPRLQALLGNAIQAAQRGAALTQRMLAFAR----R 449 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKI------LLNLFMVA 126 + + D+ + + + V + L R R LLNL + A Sbjct: 450 QDLKPEPVDVPDLVLGMAELLRRSIGPSVRIETHFPLGLPRARVDANQLELALLNLAVNA 509 Query: 127 HASLPRGGKVTISVQDSKNE 146 ++P GG +TI+ ++ + Sbjct: 510 RDAMPEGGTITIAAREETVD 529 >gi|222083200|ref|YP_002542603.1| bacteriophytochrome protein [Agrobacterium vitis S4] gi|221738580|gb|ACM39418.1| bacteriophytochrome protein [Agrobacterium vitis S4] Length = 378 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 15/149 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLSSMSAIIRLKFMRLAFGYT 74 + H++ +P+ A+ L LL +V E++ ++ I S L R+ G Sbjct: 160 LAHELRNPLAALQGGLSLLKKVNGEEQTAKIGKLMQEQITHLSHLVDDLLDVSRITQGKI 219 Query: 75 GSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126 + L D + D A + V D + +I L NL A Sbjct: 220 VLRKAFFDLRDAVESAVDMTRPAIDAKGHNLVVKLPERSCDAMADNVRITQCLANLLNNA 279 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING 155 P GG++ + + + ++ NG Sbjct: 280 AKYTPDGGQIYVELVEDVESFRLTVSDNG 308 >gi|94264019|ref|ZP_01287820.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455612|gb|EAT05797.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 555 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL- 55 K + L A+ L + + H++ +P+ +I LL + + E +++I Sbjct: 325 KKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAEQ 384 Query: 56 ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKI 109 SS L F R + +TG L I + + D +R+++ + + Sbjct: 385 TRRSSTIIKALLSFARNS-NHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443 Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E ++++NL + ++ G++ + + + ++ NG PE + Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502 Query: 166 QIVDG 170 +I D Sbjct: 503 RIFDP 507 >gi|118578878|ref|YP_900128.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118501588|gb|ABK98070.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 412 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 81/215 (37%), Gaps = 24/215 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-----AIIRLK 65 L A+ L + + HDI +P+ +I +L+ + I+ + + + AIIR K Sbjct: 189 KLAAMGYLAAGMAHDIRNPLNSISLFTQLMRQNSIDPDQEEYLGKIIKEIERIDAIIR-K 247 Query: 66 FMRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERA-- 116 + + + S + + +V I K R++ + + + A Sbjct: 248 LLNM---SSRSRNVTSDVRIDRVIDTALEVFAPQIETGKIRLERRYELTPPPIKADAAEL 304 Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVES 174 ++ NLF+ A +P GG++ + + ++ + ++ +G PE +I D + Sbjct: 305 EQVFTNLFLNALDEMPGGGRLGVGIAVEEDMVVVRVEDSGKG--IPEHALPRIFDPFFTT 362 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 + V +A + E V+ Sbjct: 363 KPRGTGVGLPVVKRIARLCGGSVRVERSSREGTVV 397 >gi|307326290|ref|ZP_07605486.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306887953|gb|EFN18943.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 488 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 3/108 (2%) Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI 167 + A++L NL A P G +V + + + +++ +G P F + Sbjct: 371 VPARLARLLTNLLDNAAKFSPPGAEVEVRLTSGEPAIDLTVRDHGPGIAAEDLPYVFDRF 430 Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +A + L E D + + + Sbjct: 431 YRSRQARALPGSGLGLAMARQIARAHGSALSAEAADGGGALFRLRIPR 478 >gi|270264907|ref|ZP_06193171.1| sensory histidine kinase CreC [Serratia odorifera 4Rx13] gi|270041205|gb|EFA14305.1| sensory histidine kinase CreC [Serratia odorifera 4Rx13] Length = 472 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 30/213 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------------ 65 H++ SP+ AI + ELL E+ + + R++ Sbjct: 265 HELKSPLAAIRGAAELLQELPPPATARRFLTN-IEQQSARIQQLVDKLLVQARLESRPGL 323 Query: 66 -FMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 LA V + + + + VD ++ TG+ + +S + L NL Sbjct: 324 ELAPLAM--ATLVSQAVAGKEAQAAQRGVVLQVDALEAITLTGDGLLIS----QALTNLL 377 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHD 180 A P GG V++ + ++ + ++ NG+ + F + S Sbjct: 378 DNALDFTPPGGAVSVCGERRESHYLITVSDNGSGIPDYALDKVFERFYSLARADKPKSSG 437 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 + +V +A ++ + H VV L Sbjct: 438 LGLNFVQEVARLHRGGIQLYNRQPHGVVAVFTL 470 >gi|260432501|ref|ZP_05786472.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157] gi|260416329|gb|EEX09588.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157] Length = 460 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 17/162 (10%) Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL----SRERAKI 118 LAFG + + + V D + D R+++ + + + ++ Sbjct: 296 LAFGRAEEPAPTLNMVRLRDVAADVVGSEALAVDDARIEIRNEVPEDMVIRADPEQMFRV 355 Query: 119 LLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 L+NL A +L G++T+S ++ + + ++ G P + + + + Sbjct: 356 LMNLVRNARQALVASGQPGQITVSAREDDDAWLIDVEDTGPG--LPPRAQENLFTPFQGG 413 Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + L + L+ L + Sbjct: 414 VRKGGSGLGLAISQELVRGHGGELVLRRTGPEGTAFEIRLPR 455 >gi|186896601|ref|YP_001873713.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis PB1/+] gi|186699627|gb|ACC90256.1| integral membrane sensor signal transduction histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 472 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 23/153 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82 H++ SP+ AI + ELL E + + LI R++ + ++S + Sbjct: 265 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 322 Query: 83 LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 L + + V K V + L ++ L NL Sbjct: 323 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALNNLIDN 379 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG++++S + + + +++ +G+ Sbjct: 380 ALDFTPAGGEISVSGERQDDTYLITVEDSGSGI 412 >gi|330876582|gb|EGH10731.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 660 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LLNL + A ++PRGG++TI + +E + + G I Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQTRDLSPGQYLSLCVSDTGTGMSPEVI 462 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 + F+ L + L Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484 >gi|239908420|ref|YP_002955162.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798287|dbj|BAH77276.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 459 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 16/167 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRL 69 + + I HD+ P+ I + LE+ E E + I + L + Sbjct: 240 VSNNIAHDLRGPLNRIRSGLEITLSRPQEPEACRQALERAITEIDGLLQTFNALLTIAQA 299 Query: 70 AFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 G + I L D ++ E ++ + R ++ L NL Sbjct: 300 ESGARRQDFTDIDLTSLAADAAELYEPVAEEAGLSLEVDLAPQVTVPGNRHLLSQALANL 359 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 A P GG+VT+S+ ++ G PE +++ Sbjct: 360 LDNAVKYTPDGGRVTLSLTSGPAGPELTVADTGPGI-PPEHREFVLE 405 >gi|237729298|ref|ZP_04559779.1| sensory histidine kinase CreC [Citrobacter sp. 30_2] gi|226909027|gb|EEH94945.1| sensory histidine kinase CreC [Citrobacter sp. 30_2] Length = 474 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 73/192 (38%), Gaps = 19/192 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78 H++ SP+ AI + E+L E G V+ + ++ R++ +R A D Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPNVVARFTDNILTQNARMQALVETLLRQA-RLENRQD 322 Query: 79 SLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERA---KILLNLFMVAHAS 129 + + +++ + K + ++ + ++ + A + L NL A Sbjct: 323 ITLTVVEVDTLFAQLKEARSVQLAAKNITLTILPSSLSVAADPALLEQALGNLLDNAIDF 382 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYV 186 P+GG +T+S + + +G+ P F + E+ S + +V Sbjct: 383 TPQGGTITLSAHQQEELVTLQVTDSGSGIPDFALPRIFERFYSLPRENGHKSSGLGLAFV 442 Query: 187 ILLAHENKIRLL 198 +A ++ + Sbjct: 443 SEVARLHEGTVT 454 >gi|197104163|ref|YP_002129540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196477583|gb|ACG77111.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 631 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLK-FMRLAFGYT 74 HD + + AI SLEL + D L S RL F R T Sbjct: 268 HDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAAQRGASLTQRLLGFSR----RT 323 Query: 75 GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRE------RAKILLNLFMVA 126 S +++ + + D ++ V+V W +LNL + A Sbjct: 324 DSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSVEPDQLEV-AILNLAINA 382 Query: 127 HASLPRGGKVTISVQD 142 ++P GG +TI+ ++ Sbjct: 383 RDAMPDGGVITIAARN 398 >gi|83955852|ref|ZP_00964394.1| sensor histidine kinase [Sulfitobacter sp. NAS-14.1] gi|83839857|gb|EAP79034.1| sensor histidine kinase [Sulfitobacter sp. NAS-14.1] Length = 480 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 22/222 (9%) Query: 1 MAKNICFNLSS--MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M + +S L AL HD+ SP+ A+ E++D+ ++ Sbjct: 246 MQDRLTRFVSDRTQMLAALA-----HDLRSPLTALRVRAEMVDDEDTRTSLVASSEEMQR 300 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118 L F + + D+ +I +V + Sbjct: 301 MVDATLDFAK-----GVGQHEEVQSVDLHDLITGMGLDKVQVTSQGPLIVTVKPSAMGRA 355 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNV 172 L NL ++ G + +S Q +E + ++ G + + ++ Sbjct: 356 LRNLI---ENAIRYGSEARVSWQRMGSEVVVAIDDQGPGIPDNQLEAVFGPYVRLETSRS 412 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + T H + + E+ + + D + L Sbjct: 413 QDT-GGHGLGLSIARSIILEHGGSIELKNRTDGGLRAEITLP 453 >gi|182413664|ref|YP_001818730.1| histidine kinase [Opitutus terrae PB90-1] gi|177840878|gb|ACB75130.1| histidine kinase [Opitutus terrae PB90-1] Length = 785 Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPR 132 +V++ + D+ +++ + VQ++ E ++A++ LLNL + A ++P Sbjct: 487 AVEANALVTDLVKMLRRVLGEHIEVQLALLPEPCTFVADKAQLEQVLLNLCVNARDAMPS 546 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEK 163 GG++ I ++ + + A PE Sbjct: 547 GGRLRIELKQ-------TTLAAADTASLPEL 570 >gi|168703766|ref|ZP_02736043.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 483 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 27/165 (16%) Query: 14 LVA--LLCSRICHDIISPIGAI----HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-- 65 L A L + + H+I +P+ +I LE + E +++I L+ Sbjct: 261 LAAVGQLAAGVGHEIRNPLTSIKMLVQTGLEG-AAPPLSAEDLRIIESEIRRMERSLQTF 319 Query: 66 --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116 F R LG + + + + R + +++L Sbjct: 320 LEFAR----PPKLERRPTDLGAVLESVLGLVR--GRAEQQRVATRLELPGPPVVLTADAG 373 Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++ +NL + A +P GG +T+ + + + G Sbjct: 374 QLQQVFVNLVLNALDVMPTGGALTVRARAAGGGIEVEVSDTGPGI 418 >gi|94267327|ref|ZP_01290846.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93452049|gb|EAT02741.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 555 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 3 KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL- 55 K + L A+ L + + H++ +P+ +I LL + + E +++I Sbjct: 325 KKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAEQ 384 Query: 56 ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKI 109 SS L F R + +TG L I + + D +R+++ + + Sbjct: 385 TRRSSTIIKALLSFARNS-NHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443 Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 E ++++NL + ++ G++ + + + ++ NG PE + Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502 Query: 166 QIVDG 170 +I D Sbjct: 503 RIFDP 507 >gi|148256774|ref|YP_001241359.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1] gi|146408947|gb|ABQ37453.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1] Length = 892 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 15/157 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 M++V L I HD + + AI + + LL+ D Q I +A +R Sbjct: 505 MEMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 564 Query: 69 LAFGY-TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118 LAF ++ LGD + + ++V++ W + E+ Sbjct: 565 LAFSRRQTLRPQVLDLGDALSDLTMLLRRLIGEKVKLDLVHGRDLWPVKVDVSQFEQV-- 622 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++NL + A ++P GGK+++ + + G Sbjct: 623 VVNLAVNARDAMPDGGKLSVRTANVSADEAAQGAYKG 659 >gi|149923648|ref|ZP_01912044.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149815463|gb|EDM75000.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 361 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 14/216 (6%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIR---LSSMSAIIRLKF 66 AL + + I HD + + I+ + L + + + LI + + Sbjct: 10 KFAALGRMSAGIAHDFNNLLTTINLGAQELAFPDLSEADREALIAAIVQACERGAGITRQ 69 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGEKIDLS-----RERAKIL 119 ++ + S L+ LG++ V+V L + ++L Sbjct: 70 LQASSAAQLSRPELVDLGELVAKDLGVWRTLAGAEVRVEGVLPDEALPVRVDPAQFHRVL 129 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 LNL + A ++ G++T+S +F + P ++ + + Sbjct: 130 LNLVVNACQAMGESGELTLSAGRRGPGEVFVSVADTGGGIPPSVAERMFEPFFTTRETGT 189 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + + + + + +L + Sbjct: 190 GLGLAVVRGVVVQAGGSIDY-ALAGGGTIFTVVLPE 224 >gi|121533921|ref|ZP_01665747.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121307432|gb|EAX48348.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 514 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 14/217 (6%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 + L A+ + + + H+I +P+ A+ +LL E E + + + + Sbjct: 290 AERLAAIGEVAAGLAHEIRNPLMAVKGFAQLLKEDITPAEQAEYSDIIVRETERLDRLIE 349 Query: 69 LAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQ--------VSWTGEKIDLSRERAK- 117 + + + D+++V+E + KR++ + + + E+ K Sbjct: 350 QLLCFARPAATQVAPTDVKEVVESTLLLVETKRLRSHIEIIRDLDRPLPLVLVDSEQLKQ 409 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 +LLN+ + A ++ + G + +S + + ++ G PE +++ D + + Sbjct: 410 VLLNIILNAIQAIEQKGVIRVSANQAADGLHLTVADTGCGI-APENMSKLFDPFFTTKEN 468 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L R+L E + +L Sbjct: 469 GTGLGLAVAHRLVENWNGRILVESTPGQGSAFTLVLP 505 >gi|117925635|ref|YP_866252.1| periplasmic sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] gi|117609391|gb|ABK44846.1| periplasmic sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] Length = 717 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 15/153 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 LL + + HD+ +P+ + E++++ + +++ + A L F+R Sbjct: 507 LLGA-LSHDLKTPMTRLRLRAEMMEDETLRQKILTDLAEMESMAACSLDFIR-----GME 560 Query: 77 VDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130 D+ ++E A ++ + + L NL + Sbjct: 561 SGESYETIDLNSMLEQIFAEHSDMGHEVKILCDAMPPVTVKPKSLKRCLDNLI---KNAC 617 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 G + + +N + +G E Sbjct: 618 NYGKRAYVRAGTGRNGLHIVVADDGPGIPEEEL 650 >gi|332708955|ref|ZP_08428926.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L] gi|332352497|gb|EGJ32066.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L] Length = 701 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 10/131 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74 I HD+ + + I S +LL + +QL++ +A L F R G Sbjct: 342 IAHDLNNLLAPILMSAQLLQLKISDQRHLQLLKTVENNARRGAGLVKQVLSFARGITGQR 401 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131 + + +I +I + + +S + ++ L+NL + A ++ Sbjct: 402 TVLQVRHLIREIRHIILETFPRSIELSTDIDPNLWSVSGDATQLHQVLMNLCINARDAMV 461 Query: 132 RGGKVTISVQD 142 GG +T+S Q+ Sbjct: 462 DGGTLTLSAQN 472 >gi|330957563|gb|EGH57823.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 692 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 13/135 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + + V + + S++ L LAF + Sbjct: 319 IAHDFNNLLAGISGSLELITKRLSQGRVGDVDRYVSVAQSAVRRAASLTHRLLAFSRRQA 378 Query: 77 VDSLIG-----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128 + + +GD+E++I + + ++V + + A++ LLNL + A Sbjct: 379 LSPRVTDVNALIGDMEELIARTVGPEIDIKVVAQPDLWPALIDHAQLESSLLNLCLNARD 438 Query: 129 SLPRGGKVTISVQDS 143 ++P GG++ I ++ Sbjct: 439 AMPNGGRIIIETANA 453 >gi|170690465|ref|ZP_02881632.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] gi|170144900|gb|EDT13061.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] Length = 374 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 17/216 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67 +L + + HD+ +P+GA+ S E L + + + ++ +R L Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADQQS-ATVAARVKNSSLRMARMVDQLLNLA 206 Query: 68 RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125 RL G I L + VI++F + + ++ +T ++ + Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKRILFTSRGNTAGAWDTDLVWQAVSNL 266 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSH 179 +L G ++V+ F N P + + + N + + Sbjct: 267 VSNALHHGAAGDVNVEVDGEAADFVRLKVANRGVIPPEVFPHLFKAFGPNNNGSRSREGL 326 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V +A + + + + V + L + Sbjct: 327 GLGLHIVHEIARMHGGTVDVKSDESGGTVFTIELPR 362 >gi|163741291|ref|ZP_02148683.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10] gi|161385644|gb|EDQ10021.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10] Length = 439 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 25/202 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYT 74 L+ S + HD+ +P+ + L +LDE E +R L F+ + G + Sbjct: 236 TLMLSGVSHDLRTPLTRMKLGLSMLDEEDAEP-----LRQDVDEMQALLDAFLDFSRGVS 290 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA--KILLNLFMVAHASL 130 S + + ++ D + + +G+ + R A + + NL ++ Sbjct: 291 TSEPEEVDPYVMITLLVDGWRRQGKDVMLGEMSGKGKVMLRGSAIRRAVQNLI---SNAV 347 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-------- 182 G + +SV ++ ++ +G + + + +D Q Sbjct: 348 RYGTRARVSVAMTEKFLRIRVEDDGPGIAEAD---RAEATRPFTRLDPARNQDLGSGVGL 404 Query: 183 -FYYVILLAHENKIRLLPEIID 203 V +A + L E Sbjct: 405 GLAIVTDIARAHGGTLRLEQSA 426 >gi|162455246|ref|YP_001617613.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161165828|emb|CAN97133.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 491 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 56/142 (39%), Gaps = 12/142 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S + H++ +P+ + +++ ++E ++ R+ + A K +R + Sbjct: 262 LASGLAHELGTPLNVVGGRAKMIARGLPQEEAVESARIIAEQADRMTKIIRQLLDFARRR 321 Query: 78 DSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA------KILLNLFMV 125 + D+ + +A + V + +R ++L NL M Sbjct: 322 VAQKTPADLAHIARQTLALLEPLARKRSVTLRLDEASGGAARAEVDAGQMQQVLTNLIMN 381 Query: 126 AHASLPRGGKVTISVQDSKNEN 147 S+ RGG++T+ V+ ++ Sbjct: 382 GMQSMKRGGELTVRVERARARP 403 >gi|316932839|ref|YP_004107821.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315600553|gb|ADU43088.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 881 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 MD + L I HD + + AI + + LL+ D Q I +A +R Sbjct: 494 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 553 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID-LSRERA----KILL 120 LAF ++ LG+ I+ + +++ + + ++ ++++ Sbjct: 554 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKIALEMQHGRDLWRTKADVSQFEQVIV 613 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL + A ++P GGK+TI + L NG Sbjct: 614 NLAVNARDAMPDGGKLTIRTANVTASAAAQLGHNG 648 >gi|295688386|ref|YP_003592079.1| integral membrane sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295430289|gb|ADG09461.1| integral membrane sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 448 Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 24/207 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ + + + E + + + + + S L F R G + Sbjct: 246 IAHDLRTYLTRLTLRAEFIADPEQRTKATRDLAEMSQLLDDTLLFARQEAGRGEVAGPVE 305 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139 ++E ++ + + V +S L A ++L NL +L GG V + Sbjct: 306 VRRELEGLVALRAEMGQAVTLSAGAPVTALVSPVALRRMLDNLV---DNALAYGGSVALD 362 Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD------------IQFYYVI 187 + + E ++ G P+ + E S + +Q Sbjct: 363 AEVADGEARIAVLDRGPG--LPDAVLARIAAPFERGEASRNRRTGGAGLGLSIVQA---- 416 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 LA + RL+ + + + +L Sbjct: 417 -LAQAHGGRLVLANREGGGLSATVVLP 442 >gi|330953360|gb|EGH53620.1| PAS protein [Pseudomonas syringae Cit 7] Length = 674 Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ V L I L SA L LAF S Sbjct: 311 IAHDFNNMLTGIIGSLELIRRRLARGRVEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 370 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 371 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 428 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 429 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 485 Query: 183 FYYV 186 ++ Sbjct: 486 PFFT 489 >gi|313497379|gb|ADR58745.1| Integral membrane sensor signal transduction histidine kinase [Pseudomonas putida BIRD-1] Length = 484 Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 38/218 (17%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 + L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K + Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + L + +++ + D R+ V + A + + NL Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182 ++ G + + + D + + G + +E + H Q Sbjct: 393 NAIKYGERARLRIIDGAEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443 Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + ++ L + Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481 >gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 526 Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 26/219 (11%) Query: 20 SRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS----MSAIIRLKFMRL 69 S I H++ +P+ I L + E + +I + L RL Sbjct: 299 SVISHELKTPVSIIKGYASTLARTDATFSPDMLREGLTVIEEEADRLARQIQDLLDVSRL 358 Query: 70 AFGYT---------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 A G S+ + + QV E + R+ D R R ++L Sbjct: 359 AAGGARLDRCDFALSSLVADVVRSFAAQV-EGHFEFELRLADDMPPIHGDYERLR-QVLS 416 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIV--DGNVEST 175 NL A P GG + I + + + G E F + D + Sbjct: 417 NLISNAIKYSPEGGTIRIGARAEAERAVVYVADQGIGIAPEEHEQIFQRFYRVDNRLRRQ 476 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y + + R+ E L Sbjct: 477 TQGSGLGLYLARAIIEAHGGRIWVESQLGRGARFLFTLP 515 >gi|268317252|ref|YP_003290971.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334786|gb|ACY48583.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 505 Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 11/142 (7%) Query: 83 LGDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAK--------ILLNLFMVAHASLPRG 133 L + + + + R Q + E + + NL + A ++P+G Sbjct: 228 LEECLMLTRPYWYNEPRRQGIDIRVETQLEPVPPVRGIASELRQVFTNLILNAVQAMPQG 287 Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGNVESTIDSHDIQFYYVILLAHE 192 G + I+ K + ++++ PE +I + + + + V + E Sbjct: 288 GTLRIATDFDKERGVI-VRVSDTGIGMPESVRRRIFEPLFTTKPEGSGMGLAIVAGIVRE 346 Query: 193 NKIRLLPEIIDDHNVVLSALLE 214 ++ + E + Sbjct: 347 HEGSIEVESALGEGTTFTLYFP 368 >gi|258652231|ref|YP_003201387.1| multi-sensor signal transduction histidine kinase [Nakamurella multipartita DSM 44233] gi|258555456|gb|ACV78398.1| multi-sensor signal transduction histidine kinase [Nakamurella multipartita DSM 44233] Length = 874 Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 7/152 (4%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H++ GA+ ELL QL RL++ A + + R+A + +++ Sbjct: 122 HEVAGQAGALTLLAELLGPDQPPTRAEQLRRLAARGAQLAWQAGRVA----RTAGAVVER 177 Query: 84 GDIEQVIEDFIAVD-KRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRGG-KVTISV 140 D+ V+ + + ++ ++A+++ +L + + G ++T+ V Sbjct: 178 VDVAAVVHALARTGPAELDLHVDAPAPVVALVDQARLIRSLEQLIDNARRAGARQLTLRV 237 Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 + + + P +T Sbjct: 238 SGRPGPAGVRVLVVDDGPGLPAGWTSQTATTP 269 >gi|171915807|ref|ZP_02931277.1| sensor protein ZraS [Verrucomicrobium spinosum DSM 4136] Length = 399 Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 78/217 (35%), Gaps = 18/217 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF---- 66 +L + + H++ +P+ ++ L+LLD E ++ + + I RL F Sbjct: 153 TMLAAGVAHELGNPLNSLTIHLQLLDRRLRKLKAAEAGRLREMVEVAQGEIKRLDFIIGQ 212 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSRERAKIL 119 A T + L ++ + F+A V+ R+ ++ + + L + K Sbjct: 213 FLAAIRPTHPQLQRVQLNELIEEAVKFLAPELKQHKVEVRLDLTRSLPLMPLDANQMKQA 272 Query: 120 L-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 NL + ++ GG++TI + E + G E + + + Sbjct: 273 FYNLIRNSMQAMGEGGRLTIISTFTDFEVRLTFADTGKGISG-ENLSNLFQPFFTTRKTG 331 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + E+ + E + ++ L + Sbjct: 332 TGLGLLIVRRIIREHGGEIELESREGEGTKVNIYLPR 368 >gi|120610580|ref|YP_970258.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589044|gb|ABM32484.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1057 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 19/205 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR----LSSMSAIIRLKFMRLAFGY 73 + H++ +P+ AI + ++L E + +I+ + L R+ G Sbjct: 708 LSHELRNPLAAIAAASDVLSTGAGGAETTSQALGIIQRQTQHLASMMRDLLDVSRVLRGS 767 Query: 74 TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKI---LLNLFMVAH 127 L + + V E + +W + ++ + +I ++NL A Sbjct: 768 AVLARRPTDLAERVRSVRESLYVGGTMQRHAWTFDLQPAWINGDATRIEQVIVNLLQNAI 827 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQ 182 P G + +SV S +E + S+ G+ P F G ++ + Sbjct: 828 KYTPEGRSIDVSVACSGDEAVLSVADGGDGIDEDLLPHIFDLFRQGERMLDRQDGGLGVG 887 Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207 V L ++ + + V Sbjct: 888 LTLVQHLVEQHGGTIDVATSAEGTV 912 >gi|5566398|gb|AAD45389.1|AF166333_1 histidine protein kinase AsgD [Myxococcus xanthus] Length = 773 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 31/219 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKF--MRLAF 71 + HD+ +P+ AI S LL++ G E + + A R L F RL Sbjct: 558 VSHDLRNPLAAISMSAGLLEKKGALTEPQKRMVWRIGQATERAARMIRDLLDFTKARLGG 617 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKIDLSRERAKILLN 121 G + + QV+++ + V V+ W ++I A++L N Sbjct: 618 GIALHRQTTDLREVVHQVVDELLVANPGRRVEVEVQGEVRGEWDSDRI------AQVLTN 671 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDS 178 L A A P V + + + S+ G P F + G ++ + Sbjct: 672 LLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLPRLFEPLTRGALKEGQST 731 Query: 179 HDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I Y V + + + + H + L + Sbjct: 732 RSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVRLPR 770 >gi|116623299|ref|YP_825455.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226461|gb|ABJ85170.1| integral membrane sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 531 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 92 DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV-AHASLPRGGKVTISVQDSKNENIFS 150 D +++ R ++ ++ + + ++ + MV A ++P+GG + +S + K Sbjct: 394 DMQSIELRETLAEGLPPVECDANQIQQVILVLMVNASEAMPKGGTLEVSTEFDKTAEQGV 453 Query: 151 LKINGNLARFPEKF 164 +++ + P Sbjct: 454 VRVRDTGSGIPADV 467 >gi|134293448|ref|YP_001117184.1| integral membrane sensor signal transduction histidine kinase [Burkholderia vietnamiensis G4] gi|134136605|gb|ABO57719.1| integral membrane sensor signal transduction histidine kinase [Burkholderia vietnamiensis G4] Length = 425 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 20/213 (9%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 +L S I HD+ +P+ + +LL + G D +R + + + +F+ A Sbjct: 214 AVMLAS-IAHDLRTPLTRMQVRADLLTDPGDRD---GFLRDTESMSRVITQFLDFARESP 269 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERA---KILLNLFMVA 126 S + D +A D + +IL NL Sbjct: 270 ESSPQTSVDAHCRRDYTDALAPGGAADTDALVMLDLRAGPDFTLPIVDIDRILSNLV--- 326 Query: 127 HASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD-I 181 +L G V I+ + ++ +G P+ V + +H + Sbjct: 327 ENALTYGEPPVEIATRAHDGHYELVVRDHGPGVSEPDLDRVLRPFVRLDPARGGTAHSGL 386 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V L + L D +V++ Sbjct: 387 GLAIVRRLVRHHGGTLQIANAADGGLVITMRFP 419 >gi|330938966|gb|EGH42453.1| sensor histidine kinase [Pseudomonas syringae pv. pisi str. 1704B] Length = 468 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + + RV + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLRADGNGRVTQQGEAHAAYSGKPLALKRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGDRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|153003908|ref|YP_001378233.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027481|gb|ABS25249.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 664 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+ I NS+ LL+ + E +++R + L R++ G Sbjct: 311 LSHELRNPLAPIRNSIYLLERAAADSEQATRAREVVRRQTEHLTRLIDDLLDVTRISHGK 370 Query: 74 TGSVDSLIGLGDIEQVIED-----FIAVDKRVQVS-------WTGEKIDLSRERAKILLN 121 S + L +I + D F R++V W A++L N Sbjct: 371 IPLERSRVDLREIVRKTTDDLYSVFTQGGVRLRVDHVTAGPMWIEADST---RMAQVLTN 427 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 L + P GG V +SV + + +G Sbjct: 428 LLNNSMKFTPSGGAVRVSVAAREGGAELCVTDDG 461 >gi|89901263|ref|YP_523734.1| histidine kinase [Rhodoferax ferrireducens T118] gi|89346000|gb|ABD70203.1| histidine kinase [Rhodoferax ferrireducens T118] Length = 716 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 26/166 (15%) Query: 21 RICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 R+ H++ +P+ I N L +LD+ + DE++ L I +F +A Sbjct: 490 RVVHEVNNPLSIIKNYLGVLDDKLTRQEPVADELLILNEEIDRVGNIINEFAGVA----- 544 Query: 76 SVDSLIGLGDIEQVIEDFIA--VDKR-----VQVSWTGEKIDLSRERA-----KILLNLF 123 + G +I +V+ D + + R VQ+ + + +IL+NL Sbjct: 545 -PKTQAGATEINRVVNDLVRLFRESRFLPPSVQIVARMPEQIAEINGSADILKQILVNLL 603 Query: 124 MVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFTQ 166 A +LPRGG + I F L I + P + Sbjct: 604 KNAVEALPRGGHIEIDNKGCVQRDGRAFFELCIKDDGPGIPAEVLA 649 >gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1037 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 22/171 (12%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI----IRLK 65 + +A+L H++ +P+ I N+L+LL + G E + +I + L Sbjct: 673 EFLAMLA----HELRNPLAPISNALQLLKQSRFAGQEAWCLAVIDRQAAHLQRLVDDLLD 728 Query: 66 FMRLAFGYTGSVDSLIGLGD----IEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKI-- 118 R+ G + + + + I A +++ E I L + ++ Sbjct: 729 VSRITRGVIELRPEPLDVTEIIDRAVETSRALIEARRHELRIRTPTEPIRLMGDLVRLTQ 788 Query: 119 -LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165 + NL A GG + I V+ + ++ NG R P+ F Sbjct: 789 VVSNLLANAAKFTDEGGCIAIDVEREATTVLIRVRDNGLGIEPERLPQLFD 839 >gi|225873257|ref|YP_002754716.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196] gi|225793041|gb|ACO33131.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196] Length = 361 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 29/182 (15%) Query: 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEV---MQLIRLSSMSAII- 62 SS L+ L L + I H+I +P+ +I N L LL E G+ + LI I Sbjct: 93 SSHKLIELGRLSASIAHEINNPLSSITNLLFLLRQEPGLSPLATGYLDLIESEMDRVISI 152 Query: 63 ---RLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 L F R S + L + +E+V+ F+ + Q + L E Sbjct: 153 SKQTLSFSR-----ESSTPDHVSLVELVEEVL--FLYRHRVEQKHLEVRREYLPVEAVWG 205 Query: 117 ------KILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQI 167 ++L NL + A + +GG++ I ++ + + ++ + + P + + Sbjct: 206 NPGELRQVLSNLIVNAIDASRQGGRLQIRIRKAANGRGDSGIRVTVADTGTGIPPEVLRR 265 Query: 168 VD 169 + Sbjct: 266 LG 267 >gi|144899195|emb|CAM76059.1| Nitrogen regulation protein ntrB [Magnetospirillum gryphiswaldense MSR-1] Length = 372 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59 ++N ++S+M A+L H++ +P+ I + +LL+ ED+ + +LI + Sbjct: 136 SRNAARSVSAM--AAMLA----HEVKNPLSGIRGAAQLLESAASEDDRVLTRLIIDEADR 189 Query: 60 AIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 + + F G+V+ L + ++ E+ A R+ ++ ++ +R Sbjct: 190 IVALVDRMEVFSDKPMVERGAVNIHQVLEHVRRIAENGFARTVRIVENYDPSLPPVAGDR 249 Query: 116 ---AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLAR 159 ++ LNL A ++P GG++ IS + ++ L I G+ R Sbjct: 250 DQLIQLFLNLVKNAAEAVPSEGGEIIIS---TAYQHGVRLAIPGSEVR 294 >gi|148546294|ref|YP_001266396.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida F1] gi|148510352|gb|ABQ77212.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida F1] Length = 484 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 38/218 (17%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 + L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K + Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + L + +++ + D R+ V + A + + NL Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182 ++ G + + + D + + G + +E + H Q Sbjct: 393 NAIKYGERARLRIIDGTEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443 Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + ++ L + Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481 >gi|116623028|ref|YP_825184.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226190|gb|ABJ84899.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 684 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95 L EV + IR + A L F R G V+ + + E+++ + Sbjct: 352 LSEVDPRRAQVNEIRKAGAHAAELTQQLLAFSRKQVGRPRPVNLNSVVSEAEKMLRRILG 411 Query: 96 VDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152 D R+ + ++L+NL + A ++P GG + I D++ + + Sbjct: 412 EDVRLITRLDPSTGLILADPGYVHQMLMNLAVNARDAMPDGGSLVIETSDAQRHDEEGSR 471 Query: 153 IN 154 I Sbjct: 472 IA 473 >gi|330969213|gb|EGH69279.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 472 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 270 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 320 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + + RV + + A + + NL Sbjct: 321 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 378 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + F L ++ PE+ + V + + Q Sbjct: 379 ---DNALKYGDRAHLKVED--DAHAFVLHVDDEGPGVPEQRLEHVF-EPHFRLAGNQQQG 432 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 433 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 469 >gi|294676209|ref|YP_003576824.1| sensor histidine kinase [Rhodobacter capsulatus SB 1003] gi|294475029|gb|ADE84417.1| sensor histidine kinase [Rhodobacter capsulatus SB 1003] Length = 410 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 3/137 (2%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H++ +PI AI L+LL G + ++ + L+ R G + Sbjct: 224 HELRTPIAAIRGRLDLLGGPGAAA-ALPMLDDLTRRVERLLQLSRSEAGLGLGRGPSDLV 282 Query: 84 GDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQ 141 ++E+ V+ E + L + + + + + +L G G V + + Sbjct: 283 QVARLLVEEARRQGAEVRFDDGDVESLSLPVDADALAILIRNLLENALEHGTGPVRVVIS 342 Query: 142 DSKNENIFSLKINGNLA 158 + + +L I A Sbjct: 343 LAGDGGGAALMIENPTA 359 >gi|85703239|ref|ZP_01034343.1| sensory box sensor histidine kianse/response regulator [Roseovarius sp. 217] gi|85672167|gb|EAQ27024.1| sensory box sensor histidine kianse/response regulator [Roseovarius sp. 217] Length = 765 Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 13/129 (10%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGS 76 I HD + + AI +LL D+ + + + ++ A + + LA+ Sbjct: 404 IAHDFNNLLTAISGHCDLLLLRHDQGDPDYSDLMQVNQNANRAAALVSQL-LAYSRKQTL 462 Query: 77 VDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHAS 129 +I L D + + ++V +S + + R+ ++L+NL + + + Sbjct: 463 RPQVIDLRDTLSDLTHLLNRLVGEKVSLSLSHDPTLSPIRADKRQLEQVLMNLVVNSRDA 522 Query: 130 LPRGGKVTI 138 +P GG++ I Sbjct: 523 MPMGGEIRI 531 >gi|330875144|gb|EGH09293.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 638 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75 I HD + + I SLEL+ L S+ A + LAF Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371 Query: 76 SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 S+DS + + + +++ + + WT E + LLNL + Sbjct: 372 SLDSKPVEINHLVNAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181 A ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486 Query: 182 QFYYV 186 ++ Sbjct: 487 DPFFT 491 >gi|28870744|ref|NP_793363.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968962|ref|ZP_03397102.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|28853992|gb|AAO57058.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213926261|gb|EEB59816.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 646 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LLNL + A ++PRGG++TI + +E + + G I Sbjct: 389 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 448 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 + F+ L + L Sbjct: 449 NRAFDPFFTTKPLGQGTGLGLS 470 >gi|77458987|ref|YP_348493.1| GAF sensor Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382990|gb|ABA74503.1| GAF sensor signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 373 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 51/225 (22%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD+ +P+ AI S +LL+ + + LI ++ R L F R G Sbjct: 160 HDLRTPLSAIRMSADLLETKTTDKRSLSLISA-IRTSSTRMGNLIENVLDFAR------G 212 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------------KI 118 + S I I++ + D + R+ ++ ++ +S RA +I Sbjct: 213 RMGSGIP---IKRQLVDDLGNTLRLTLN----EVQISHPRATFIELVDIPAGVYCDPLRI 265 Query: 119 LLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIV--------D 169 L + ++ G + I+V+ + + + P + ++ Sbjct: 266 SQLLSNLLGNAVTHGSLASPITVKADTEVDEIVISVTNQGPPIPPHLSPLLFEPFTRSEA 325 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 G + + Y + + L + A Sbjct: 326 GQRGEGL---GLGLYIASQITTAHGGNLSVVSTLESGTCFVARFP 367 >gi|301382802|ref|ZP_07231220.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302134577|ref|ZP_07260567.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 660 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LLNL + A ++PRGG++TI + +E + + G I Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 462 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 + F+ L + L Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484 >gi|218461965|ref|ZP_03502056.1| integral membrane sensor signal transduction histidine kinase [Rhizobium etli Kim 5] Length = 593 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 13/146 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + + A R + + + GS + Sbjct: 388 VSHEVGNMIGIITGSLGLLERETGFNDRQKRHLAR-IRKAADRGRSLAGSMLSIGSQQPI 446 Query: 81 IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129 ++ V+ IA+ ++ ++ + + + +LNL + + A+ Sbjct: 447 HPSEVELGSVLRGMADVLEIAIGEKCRLDFEIADDLPMIFIDTALFEQSILNLCLNSAAA 506 Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155 +P GG + I S+ S+ +G Sbjct: 507 MPAGGTIRIRCARSEAGMTVSVTDDG 532 >gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 776 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 21/199 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGY 73 + H++ +P+ + N LE+L D + R + L+ R+ G Sbjct: 422 LAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGK 481 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL-----SRERAKILLNLFMV 125 + L Q + + +S T + L ++++LNL Sbjct: 482 LELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNN 541 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDSHD 180 A P GG ++++ + +E + ++ +G + ++ + Sbjct: 542 AAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLG 601 Query: 181 IQFYYVILLAHENKIRLLP 199 I V LA + + Sbjct: 602 IGLALVRGLAELHGGTVAA 620 >gi|331015863|gb|EGH95919.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 660 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LLNL + A ++PRGG++TI + +E + + G I Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 462 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 + F+ L + L Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484 >gi|241664376|ref|YP_002982736.1| multi-sensor signal transduction histidine kinase [Ralstonia pickettii 12D] gi|240866403|gb|ACS64064.1| multi-sensor signal transduction histidine kinase [Ralstonia pickettii 12D] Length = 763 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 18/162 (11%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSA--- 60 ++ +L A S + HD+ +P+ I ELLDE+ + +Q I SS A Sbjct: 521 ANHELEAFSYS-VSHDLRAPLRHIAGYAELLDEMEGQHVSERGRHFLQTISESSRFAGKL 579 Query: 61 -IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKI 118 L F ++ G D + L + V+ D R + W + + R A + Sbjct: 580 VDDLLTFSQMGRGALHLTDVDLALL-VRGVVRDLTVDQGRRHIEWNIAALPVVRADPAFL 638 Query: 119 LLNLFMVAHASL--PRG---GKVTISVQDSKNENIFSLKING 155 L + + ++ RG ++ I + + E I + NG Sbjct: 639 QLAMRNLLSNAIKYTRGREPARIHIDAEQTDTETIVRIADNG 680 >gi|39936943|ref|NP_949219.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650800|emb|CAE29323.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 882 Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 MD + L I HD + + AI + + LL+ D Q I +A +R Sbjct: 496 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 555 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID-LSRERA----KILL 120 LAF ++ LG+ I+ + +++ + + ++ ++++ Sbjct: 556 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKISLEMQHGRDLWRTKADVSQFEQVIV 615 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL + A ++P GGK+TI + L NG Sbjct: 616 NLAVNARDAMPDGGKLTIRTANVTASEASQLGHNG 650 >gi|330964355|gb|EGH64615.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 696 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LLNL + A ++PRGG++TI + +E + + G I Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDERGSQTRDLSPGQYLSLCVSDTGTGMSPEVI 499 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 + F+ L + L Sbjct: 500 NRAFDPFFTTKPLGQGTGLGLS 521 >gi|302062958|ref|ZP_07254499.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] Length = 649 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 LLNL + A ++PRGG++TI + +E + + G I Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 462 Query: 177 DSHDIQFYYVILLAHENKIRLL 198 + F+ L + L Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484 >gi|66047001|ref|YP_236842.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257708|gb|AAY38804.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 394 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 31/215 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ Q+++ S A L F R G+ Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGH--- 239 Query: 77 VDSLIGLGDIE---QVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125 + + + + +E I+ +RV E+I ER A++L NL Sbjct: 240 -GIPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 296 Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179 ++ G + + V + +F L + PE + I Sbjct: 297 -SNAISHGDAESPVEVTAGVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y +A + L + V + + Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390 >gi|226946292|ref|YP_002801365.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ] gi|226721219|gb|ACO80390.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ] Length = 981 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 69/173 (39%), Gaps = 17/173 (9%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFM 67 S L ++ L + + H+I +PI I + L E +D + I + R+ + + Sbjct: 749 SERLASIGRLAAGVAHEIGNPITGIACLAQNLREEHEDDAELGEISSQIIDQTKRVTRIV 808 Query: 68 R--LAFGYTGS---VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDL---SRER 115 R ++F + GS + L DI + +++++ ++ + + Sbjct: 809 RSLMSFAHAGSHTQASEAVCLADIAREAIGLLSLNREGTEVSFLNLCDPGHCVVGDPQRL 868 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 ++L+NL A + P GG + + + + ++ G+ P+ + Sbjct: 869 VQVLVNLLSNARDASPPGGVIRVRSEAVEQSIDLIVEDEGSG--IPKAIAGRL 919 >gi|330827911|ref|YP_004390863.1| sensor histidine kinase [Aeromonas veronii B565] gi|328803047|gb|AEB48246.1| Sensor histidine kinase [Aeromonas veronii B565] Length = 463 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 11/184 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI ++ E L + ++ + Q ++ L F R G + L Sbjct: 267 ISHDLRTPITSLRLRTEFLADGEDKERIQQTLQQMEQMLAATLSFAREE-GQQEATRELD 325 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139 + + + +D+ + V G+++ R ++L NL ++ G +S Sbjct: 326 LVSLLVSLCDDYADTGQPVTCLAEGKEVYACRANTLRRVLQNLI---GNAIKYAGSAEVS 382 Query: 140 VQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHDIQFYY--VILLAHENK 194 ++ K E + + NG AR + F V + +S + L H++ Sbjct: 383 LERRKEELLIRVCDNGPGIDPARLEDVFKPFVRLDEARNTESGSVGLGLSIARTLVHQHG 442 Query: 195 IRLL 198 L Sbjct: 443 GELT 446 >gi|256783166|ref|ZP_05521597.1| two component system histidine kinase [Streptomyces lividans TK24] Length = 508 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 19/215 (8%) Query: 19 CSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAI----IRLKFM 67 + + H++ +P+ A+ E+LDE ++ ++LI + ++ Sbjct: 287 AADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTEDAVRLISEEVRTLTRMVEDLMEVS 346 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 R + L + A D+RV+ E + + +I + L + Sbjct: 347 RFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVRAD-LPEPAPVRVDPRRIDVVLGNL 405 Query: 126 AHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-SHD 180 +L GG VT++V+ S + ++ G P F + + Sbjct: 406 VANALHHGGPPVTVAVRVSDDRVRVTVTDRGPGIPDDALPYVFDRFYKADAARPRSGGSG 465 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + A + L V + L + Sbjct: 466 LGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 500 >gi|322418783|ref|YP_004198006.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125170|gb|ADW12730.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 981 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 26/218 (11%) Query: 19 CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQL---IRLSSMSA----IIRLKFMR 68 C I HD+ SP+ AI +L E E QL I S++ L F R Sbjct: 747 CYTISHDLRSPLRAIDGFTHILREDHEADFNAEGRQLCQRISGSAVRMGELIDDLLNFSR 806 Query: 69 LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLS-RERAKILLNLFMVA 126 + G I + D + V ++ + + R ++ + + + +RA + + Sbjct: 807 I--GRAALQADPIEMTDLVRAVFDEVVPQEARRRIEFRLAPLPPAIGDRATLRQVWANLI 864 Query: 127 HASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-- 179 ++ + I + ++ E +F ++ NG F + + G + +H Sbjct: 865 DNAVKYSSDRPRQVIEIGGEQTETETVFQVRDNGVG--FDMAYADKLFGVFQRLHGAHEF 922 Query: 180 ---DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + R+ E D L L Sbjct: 923 RGTGVGLAIVGRIVQRHGGRVWAEGAVDRGATLYFSLP 960 >gi|148550792|ref|YP_001260231.1| response regulator receiver sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] gi|148503211|gb|ABQ71464.1| response regulator receiver sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] Length = 377 Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 23/215 (10%) Query: 22 ICHDIISPIGAIHNSLELLDE-VGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGYT 74 + H++ +PI A+ L L++ +E M + +R L R+ G Sbjct: 163 LAHELRNPIMAMGAGLHLMERRPDLETATMVRGQMSKYVRHLGSLVEDLLDIARIDQGKI 222 Query: 75 GSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKID-LSRERAKILL---NLFMVA 126 + L D+ I + K L + A++ NL A Sbjct: 223 ALKKERLLLQDLLSFAVEGSRHHIDAASHELIQHVAPKPIWLEADHARLAQVVGNLLTNA 282 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHD 180 P GG++ +S + +++ + G AR + F QI DG+ + T + Sbjct: 283 AKYTPAGGEIRLSARREEDQVRIEVADTGVGIPAEMQARIFDLFAQI-DGSNQRTQEGLG 341 Query: 181 IQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 I V L + + + V ++ Sbjct: 342 IGLALVKQLVELHGGTIALKRSAPGEGSVFEVVVP 376 >gi|94970302|ref|YP_592350.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552352|gb|ABF42276.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 631 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 30/226 (13%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR 63 S L A+ L S + H++ +PI AI LE+L + M +I Sbjct: 391 SRRLAAIGRLTSGVAHEVKNPINAIVVHLEILKNKLQEVAPDARRHMDIIENEIRRLDRV 450 Query: 64 LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS- 112 ++ F R V+ + D+ ++ E+ A +K V + + + L Sbjct: 451 VQTLVDFTR-------PVELKLFDADLRKIAEEVALLAGPEAANKNVHIEFNAVEKTLPV 503 Query: 113 ---RERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 + K +LN+ + ++ GG + I+ + + + + + G E +I Sbjct: 504 YVDTDLVKQAILNIVINGVQAMSDGGTLKITARSNDSAALLEISDQGPGI-PKEIQDKIF 562 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + I + + L E + Sbjct: 563 NLYFTTKKTGTGIGLAMTYRVMQLHNGALEFETEPGKGTTFRLQVP 608 >gi|108763723|ref|YP_629389.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622] gi|6578850|gb|AAF18102.1|AF204400_2 FrgB [Myxococcus xanthus] gi|108467603|gb|ABF92788.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622] Length = 510 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 26/222 (11%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIR 63 L L +++ HD+ +PI A+ + + L E + L+ Sbjct: 280 RLATLGRFSAQMAHDLKNPIAAMKGAAQYLKEEHARGRSWDGQGEFLDLLLEQVERLDRV 339 Query: 64 L-KFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAK 117 + + RLA V+ L D+ +++E A +V + + Sbjct: 340 VDTYQRLA-----RVEPLPKPVDLRRLVEGVLSLQVFASPGKVVIIRELAAGLPPCAGDQ 394 Query: 118 ILL-----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 LL NL A ++P GG +T+ + ++ G + D Sbjct: 395 DLLANALENLVRNACEAMPGGGTLTVRALRDGADVAMEVEDTGEGM-DARTRERAFDDFF 453 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +V + + +L + V+ L Sbjct: 454 TTKASGSGLGLAFVRRVVEAHGGEVLLTSREGRGTVVRMRLP 495 >gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 877 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRL-KFMRLAFG 72 + + H++ +P+GA+ N E L E + ++Q I + + + L+ Sbjct: 529 AHMSHELRTPLGAMLNLAEALAEESLGTLNEAQRRILQSIEECGRHFLSLIGDILDLSKV 588 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDL-----SRERAKILLN 121 G +D + D+ + + R + VS + + +IL+N Sbjct: 589 EAGRLDLVRSPLDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVN 648 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIV------DGNVES 174 L A P+GG+V + V ++ + PE ++ +G + Sbjct: 649 LLSNAVKFTPQGGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSR 708 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V+ + + L E + L Sbjct: 709 SFSGTGLGLSLVLRMVELHGGGLQVESAPGEGSRFTVRLP 748 >gi|298485852|ref|ZP_07003929.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159630|gb|EFI00674.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 468 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEHLQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ +++ + + RV + + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLDCLVEPWLLADGNGRVTQQGEAQAAYPGKPLALRRCMGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D+ + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 465 >gi|171912097|ref|ZP_02927567.1| putative sensor histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 395 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 26/212 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL-KFMRLAFGYTGSVDS 79 HD+ SP+GAI +L E + ++ + ++ + + M L G G S Sbjct: 184 HDLRSPLGAISMGALMLKEGELSEDQHATVAMMERNVAKISDLVDDVMDLTRGRLGGGIS 243 Query: 80 LIGLGDI--EQVIEDFIAVDKRVQ-------VSWTGEKIDLSRERA-KILLNLFMVAHAS 129 L L D E V+ + ++ ++ V ++ R R ++ NL + Sbjct: 244 LKDLTDAPLEPVLRQIVEQEQTIRPQPLIECVFAINHRVSYDRNRMGQLFSNLL---SNA 300 Query: 130 LPRG--GKVTISVQDSKNENIFSLKINGNLARFPE-----KFTQIVDGNVESTIDSHDIQ 182 + G G V ++V+ S ++ F+L ++ P+ F + G + Sbjct: 301 MKYGLPG-VPVAVRASTDQERFTLSVSNGTDPIPQEELDKLFLPFMRGPGAREEKGLGLG 359 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y +A + ++ + + V + + Sbjct: 360 LYIASEIAASHSGKIDV-VSEKGVVCFTFTMP 390 >gi|163744381|ref|ZP_02151741.1| Signal transduction histidine kinase [Oceanibulbus indolifex HEL-45] gi|161381199|gb|EDQ05608.1| Signal transduction histidine kinase [Oceanibulbus indolifex HEL-45] Length = 666 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 39/194 (20%) Query: 24 HDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL---------------- 64 H++ +P+ ++ SLE+L E I +L+ +++ +A L Sbjct: 432 HELSTPLRSLAGSLEILHERFGDTIPKSAGELLTMATRNAERLLVLVNDIQTLQAIDQQQ 491 Query: 65 ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERA---- 116 +F R+A L + + A D R+++ + + R Sbjct: 492 LSIQFERVA--------VSDLLSEAIATNSGYGANRDVRLKMRTAPDAPQDAYIRVDPVR 543 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 +IL NL A PRGG V I + + F + G P + Sbjct: 544 MQQILSNLISNAIKYTPRGGTVKIGADVDQEKVTFYVCDAGPG--IPRSAHDRMFKRFAD 601 Query: 175 TIDSHDIQFYYVIL 188 + S D Q Y L Sbjct: 602 PVHSRDTQAYGTGL 615 >gi|104783384|ref|YP_609882.1| sensor histidine kinase [Pseudomonas entomophila L48] gi|95112371|emb|CAK17098.1| putative sensor histidine kinase [Pseudomonas entomophila L48] Length = 484 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 75/211 (35%), Gaps = 24/211 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 A L S + HD+ +PI + +ELL++ ++ + ++L+ A+ +K + Sbjct: 284 AQLFSAVSHDLRTPITRLRLRVELLEDEQVQAKFNRDLDELELL---VKGALQCVKDTDI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 I L + +++ + D R+ V + A + + NL Sbjct: 341 -----HENIEPIDLNQVLEMLAEPYVGDGRITVEGKALSPYPGKSLALRRCIGNLI---D 392 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFY 184 ++ G + + + DS + + G R + F + + + Sbjct: 393 NAIKYGERAHLRILDSAESFVLQVDDQGPGVPEQRLEQVFEPHF--RLAGQQQGYGLGLG 450 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +AH + + + + + ++ L + Sbjct: 451 IARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481 >gi|327189341|gb|EGE56509.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 440 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 8/149 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + ++ ++ +D++M + + + R A G G ++ I Sbjct: 243 ISHDLQTPITRMRLRADMAEDSPEKDKLMNDLGEIQRLVQDGIAYARSAHGN-GEKNARI 301 Query: 82 GLG-DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 L I+ + D+ K V V + ++ A +IL N +L G I Sbjct: 302 DLASFIDSIAYDYQDTGKAVTVLGLVQGAAFTKPHALRRILSNFI---DNALKFAGAAEI 358 Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQI 167 SV+ + + + + P++ + Sbjct: 359 SVERNVEND-IVISVMDRGPGIPDEMLEA 386 >gi|271965270|ref|YP_003339466.1| osmosensitive K+ channel signal transduction histidine kinase [Streptosporangium roseum DSM 43021] gi|270508445|gb|ACZ86723.1| osmosensitive K+ channel signal transduction histidine kinase [Streptosporangium roseum DSM 43021] Length = 846 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 18/216 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA-------IIRLK 65 ALL + + HD+ +P+ + ++E L IE ++ +L+ + S L Sbjct: 625 ALLAA-VSHDLRTPLASARLAVESLRGTEIEWSAEDRAELLATADESLIKLDRLVANLLD 683 Query: 66 FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 RL G G + L + I + I+D + RV+ + + ++ + A +IL+N Sbjct: 684 MSRLQAGVLGLTLQPVALEEVIPRSIDDLGPLRDRVEGDVSVDLPEILADSALLERILVN 743 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD- 180 + A P G KV I+ + + G + D+H Sbjct: 744 VMSNAVRYSPAGKKVLITASRHGDHVEIRVVDRGPGIPAEAHDRVFMPFQRLGDRDNHTG 803 Query: 181 --IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L PE + + L Sbjct: 804 VGLGLALSRGLAEAMGGTLTPEETPGGGLTMVLTLP 839 >gi|149919249|ref|ZP_01907732.1| two-component hybrid sensor and regulator [Plesiocystis pacifica SIR-1] gi|149819963|gb|EDM79385.1| two-component hybrid sensor and regulator [Plesiocystis pacifica SIR-1] Length = 743 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 20/193 (10%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL----SSMS 59 MD + LL S + HD + + I ELL +E ++LI S+ Sbjct: 380 DKMDALGLLASGVAHDFNNMLTGILGGAELLRATISPEEEEDALPFIELISDAAERSAEL 439 Query: 60 AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI- 118 L F R + VD + + ++ + ++Q + +R ++ Sbjct: 440 TAQLLSFSRKSHVELSPVDVHASVREAVALLRRSLDKRVQIQTRLDAAHATVIGDRGRLL 499 Query: 119 --LLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNL------ARFPEKFTQIVD 169 L+NL + A ++ GGK+T S + + ++ G+ AR E F Sbjct: 500 SALINLGVNASHAMHGGGKLTFSTRLREPTQLEIEVRDTGSGISEDNLARIFEPFFTTKK 559 Query: 170 GNVESTIDSHDIQ 182 + + +Q Sbjct: 560 EGKGTGLGLAAVQ 572 >gi|149915202|ref|ZP_01903730.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b] gi|149810923|gb|EDM70762.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b] Length = 766 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 72/193 (37%), Gaps = 21/193 (10%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78 HD + + AI +LL + G D + I ++ A + + LA+ Sbjct: 406 HDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQISQNANRAAALVSQL-LAYSRKQTLRP 464 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 ++ L D+ + + ++V + + + R+ ++L+NL + A ++P Sbjct: 465 EIMDLRDMLADLTHLLNRLVGEKVSLLLRHDPVLARIRADKRQLEQVLMNLVVNARDAMP 524 Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYYV 186 +GG++ I ++ + G P ++ +V + I +Q FY Sbjct: 525 QGGEIRIVTENLLLDEPLR---RGRAVVAPGRYVSVVVSDEGVGIAPDKLQKVFEPFYST 581 Query: 187 ILLAHENKIRLLP 199 + + L Sbjct: 582 KRVGEGTGLGLST 594 >gi|330968488|gb|EGH68748.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 247 Score = 36.0 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 20/206 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVDSL 80 I HD+ +PI + +ELLD+ D++++ + L F+R G Sbjct: 44 ISHDLNTPITELRLQMELLDDGPERDDMLESLDELRAMVRETLNFVR---GDAVQEATVE 100 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVAHASLPRGGKV 136 I L + + A + W G + R R + L NL +L G Sbjct: 101 ISLTALIDDLAKRYATMGTP-IGWRGASEIMCRCRPLALKRALTNLI---DNALKHAGDA 156 Query: 137 TISV-QDSKNENIFSLKINGNLARFP------EKFTQIV-DGNVESTIDSHDIQFYYVIL 188 T+S+ + + + +G E F Q+ G + Sbjct: 157 TVSLFKAPDGDIHLEVLDHGPGIEPAWLTQVFEPFVQLSQTGTDHPQGGGLGLGLAIARA 216 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214 + L E + L Sbjct: 217 CVQAHGGELTLENRPPAGLCAVVRLP 242 >gi|283835063|ref|ZP_06354804.1| sensor histidine kinase CreE [Citrobacter youngae ATCC 29220] gi|291069355|gb|EFE07464.1| sensor histidine kinase CreE [Citrobacter youngae ATCC 29220] Length = 474 Score = 36.0 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 27/196 (13%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78 H++ SP+ AI + E+L E G V+ + ++ R++ +R A ++ Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPNVVARFTDNILTQNARMQALVETLLRQA-----RLE 318 Query: 79 SLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125 + + ++ A K + ++ T + ++ + A + + NL Sbjct: 319 NRQDITLAPVAVDALFAQLKEARSVQLAAKNITLAITPSSLSVAADPALLEQAMGNLLDN 378 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQ 182 A P GG + +S ++ + +G+ P F + E+ + S + Sbjct: 379 AIDFTPPGGTIALSAHQQEDRVTLQVVDSGSGIPDFALPRIFERFYSLPRENGLKSSGLG 438 Query: 183 FYYVILLAHENKIRLL 198 +V +A ++ + Sbjct: 439 LAFVSEVARLHEGSVT 454 >gi|218528583|ref|YP_002419399.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520886|gb|ACK81471.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1089 Score = 36.0 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIR--------LKFMRLAF 71 + HD + + AI SLELL + + L R ++ A+ R L F R Sbjct: 722 LAHDFNNLLTAISGSLELLQTRLRQGRLSDLDRYINAAQGAVRRAAALTHRLLAFSR--- 778 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNL 122 + + +E+ I ++ W + + LLNL Sbjct: 779 -RQTLAPKPTDMNRLVAGMEELIRRTVGPEIEVEAVKAVGLW--PTLVDPPQLENALLNL 835 Query: 123 FMVAHASLPRGGKVTISVQD 142 + A ++P+GG++TI + Sbjct: 836 CINARDAMPKGGRITIETAN 855 >gi|94494912|ref|ZP_01301493.1| sensor histidine kinase [Sphingomonas sp. SKA58] gi|94425178|gb|EAT10198.1| sensor histidine kinase [Sphingomonas sp. SKA58] Length = 570 Score = 36.0 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 22/159 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFG-YT 74 L + + HD + + + ++EL+ ++D +L+ ++ + K R LAF T Sbjct: 189 LTAGLAHDFNNLLQIVTGNIELVLTGDLDDRQRRLLTNAARATDRGTKLTRQLLAFARKT 248 Query: 75 GSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKI--------LLNLFM 124 I L D+ D I V ++++ E+ +I LLN+ + Sbjct: 249 RLEPKRINLNDLIHDFGDLIDNTVGAQIRLVTALERRL---PDVQIDPSHLEMALLNVLL 305 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A ++P GG VTI+ + ++ L N + PE Sbjct: 306 NARDAMPEGGTVTIATE------LWKLNGNAAAHQLPEG 338 >gi|120603096|ref|YP_967496.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120563325|gb|ABM29069.1| histidine kinase [Desulfovibrio vulgaris DP4] Length = 391 Score = 36.0 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 19/208 (9%) Query: 24 HDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 HD+++ G + + L + D M L+ + + + + R+ + + + Sbjct: 172 HDLLNMAGGLRSISGLLVEDVPLDVRADMLLVHRYATALVEEILAQRV-LVAAENDELGV 230 Query: 82 GLGD--IEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128 L D +V+ D I +DKR+ + G + +S +R ++L NL A Sbjct: 231 ELRDVQAREVLRDVIELYRTHEACIDKRLVMEPCGGHLLISTDRVLLARVLGNLVKNALE 290 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 + PRGG VT + + + F + G ++ PE Q+ + + + Y V L Sbjct: 291 ASPRGGVVTAGCEATSSGVTFRVHNAGFIS--PEVRAQMFQRSFSTKGQGRGLGMYGVRL 348 Query: 189 LAHEN-KIRLLPEIIDDHNVVLSALLEK 215 L R+ D L +L + Sbjct: 349 LTGNYLGGRVECLSSRDSGTTLLVILPR 376 >gi|148255719|ref|YP_001240304.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407892|gb|ABQ36398.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 600 Score = 36.0 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 38 ELLDEVGIEDEVMQLIRLSSMS---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94 E L + +VM+LI+ L F R +D L D++++ + Sbjct: 255 ECLGDDPRLPDVMELIKAIERGRDLTRQLLAFSRKQPATPTLLDLGATLADLQKMFRRLL 314 Query: 95 AVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 + + + + + +R + +++NL + A ++P GG++TI + + + Sbjct: 315 PSNIEISIDVEEQSWPVIADRVQVEQLIMNLALNARDAMPSGGQLTIRLANRTIQCGDEG 374 Query: 152 KINGN 156 G+ Sbjct: 375 MEPGD 379 >gi|312196522|ref|YP_004016583.1| multi-sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311227858|gb|ADP80713.1| multi-sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 659 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 16/147 (10%) Query: 35 NSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-DSLIGLGDIEQVIEDF 93 ++ L + G + I+ ++ A + + LAF T V + + ++ IED Sbjct: 304 AAMLLGEVEGPARRDVTAIQEAAARASALTRQL-LAFARTQPVRPEPVDVDELVTGIEDM 362 Query: 94 IAVDKRVQVSWTGEKIDLSRERA--------KILLNLFMVAHASLPRGGKVTIS----VQ 141 + R + +R ++L+NL + + ++P GG++TIS Sbjct: 363 LRRLIREDI--QITVRAAARATVWADRGQLEQVLMNLAVNSRDAMPDGGRLTISTARAPA 420 Query: 142 DSKNENIFSLKINGNLARFPEKFTQIV 168 + + ++ + PE ++ Sbjct: 421 GGADGDQVTITVADTGHGIPEDIQPMI 447 >gi|218887623|ref|YP_002436944.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758577|gb|ACL09476.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1222 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKFMRLAFG-YTGSV 77 I HD + +G I +++E+L + G+ I +++ A ++ + LAFG Sbjct: 855 IAHDFNNILGVIMSNIEMLRDTGLTGRAATRADRILRAALRARDVVRQL-LAFGRPADEP 913 Query: 78 DSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130 + + L D +++ I ++ + + + +I LLNL A ++ Sbjct: 914 YATLDLCRTVADALHMVKPSIPASVTLRTLLPVAPLPVHGDITQIHQVLLNLCTNAVHAM 973 Query: 131 PRGGKVTISVQ 141 P GG + +S+ Sbjct: 974 PDGGVLDVSLA 984 >gi|190895341|ref|YP_001985633.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190699286|gb|ACE93370.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 644 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 I HD + + A+ SLE+L + +D + L+ + A L LAF + + Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346 Query: 79 SLIGLGDIEQVIEDFIAVDKR-----VQVSW----TGEKIDLSRERAKI-LLNLFMVAHA 128 + D+ ++ + + R + I + ++ +LNL + A Sbjct: 347 LHMEPIDVSGLVRGMMDILSRSLGPLTTIETYYPVRLPTILTDPNQLEMAILNLVVNARD 406 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG++T+ + G R +G T++ F+ Sbjct: 407 AMPAGGRITLRASEESIAAGKGPLSAGRYVRI--AVVDEGEGMDAKTLEQAVTPFFTTKG 464 Query: 189 LAHENKIRLL 198 + + L Sbjct: 465 VGKGTGLGLS 474 >gi|302036059|ref|YP_003796381.1| hypothetical protein NIDE0686 [Candidatus Nitrospira defluvii] gi|300604123|emb|CBK40455.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 922 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 30/173 (17%) Query: 13 DLVAL--LCSRICHDI---ISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSA 60 L AL + S I HD +SPI ELL + E +Q I +++ A Sbjct: 545 RLRALGQMASGIAHDFNNTLSPIMGFS---ELLLIAPQMASDPAQLKEYLQTINMAAKDA 601 Query: 61 I---IRLK-FMRLAFGY--TG------SVDSLIGLGDIE---QVIEDFIAVDKRVQVSWT 105 RL+ F R G V + L + Q + + +A++ + ++ Sbjct: 602 AKVVSRLRDFYRPRLDADLAGIVDLNSLVQQSVKLSQPKWKDQALANGVAIEIKTELEPV 661 Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 E ++L NL A ++P+ G +T+ + + + G Sbjct: 662 PSVAGHESELREVLTNLVFNAVDAMPKSGSITLRTKVDGDAVRLEVSDTGTGM 714 >gi|289767047|ref|ZP_06526425.1| two component system histidine kinase [Streptomyces lividans TK24] gi|289697246|gb|EFD64675.1| two component system histidine kinase [Streptomyces lividans TK24] Length = 501 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 19/215 (8%) Query: 19 CSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAI----IRLKFM 67 + + H++ +P+ A+ E+LDE ++ ++LI + ++ Sbjct: 280 AADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTEDAVRLISEEVRTLTRMVEDLMEVS 339 Query: 68 RLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 R + L + A D+RV+ E + + +I + L + Sbjct: 340 RFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVRAD-LPEPAPVRVDPRRIDVVLGNL 398 Query: 126 AHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-SHD 180 +L GG VT++V+ S + ++ G P F + + Sbjct: 399 VANALHHGGPPVTVAVRVSDDRVRVTVTDRGPGIPDDALPYVFDRFYKADAARPRSGGSG 458 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + A + L V + L + Sbjct: 459 LGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 493 >gi|330975744|gb|EGH75810.1| sensor histidine kinase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 468 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I D+ ++E + + RV + A + + NL Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAHAAYSGKPLALKRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + F L ++ PE+ + V + Q Sbjct: 375 ---DNALKYGHRAHLKVED--DAHAFVLHVDDEGPGVPEQRLEHVF-EPHFRLAGSQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|239908597|ref|YP_002955339.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798464|dbj|BAH77453.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 571 Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 41/221 (18%) Query: 24 HDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLA------------ 70 HD+++P+ + ELL+ E + + +L+R ++ S L +RLA Sbjct: 356 HDLVTPLSGLIGIPELLETEENLTPQQRELLRHAATSGRRMLATIRLAGDLARMEKGTYH 415 Query: 71 --------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL--- 119 G + + + +++D R E +R A +L Sbjct: 416 VAKADCDVLGIIRDARVNLDKLFAVKGLAFAVSLDGRPA---GAEDRAPARGDANLLGNL 472 Query: 120 -LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVE 173 NL A + P+GG+V + ++ + + + F + V G Sbjct: 473 FENLLKNAAEASPQGGEVAVDIRLPEGMVAVRNRGQVSPDIVDTFFEKYVTRGKTFGTGL 532 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 T + L+A + + E+ + +V + LL Sbjct: 533 GTYSAR--------LIARAHGGDAVLELGEPDHVTVRVLLP 565 >gi|187930208|ref|YP_001900695.1| GAF sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187727098|gb|ACD28263.1| GAF sensor signal transduction histidine kinase [Ralstonia pickettii 12J] Length = 762 Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 20/163 (12%) Query: 10 SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSA--- 60 ++ +L A S + HD+ +P+ I ELLDE+ + +Q I SS A Sbjct: 520 ANHELEAFSYS-VSHDLRAPLRHIAGYAELLDEMEGQHVSARGRHFLQTISESSRFAGKL 578 Query: 61 -IIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AK 117 L F ++ G D + L + V+ D R + W + + R A Sbjct: 579 VDDLLTFSQMGRGALHLTD--VDLAQLVRGVVRDLTPDQGRRHIEWDIATLPVVRADPAF 636 Query: 118 ILLNLFMVAHASL--PRG---GKVTISVQDSKNENIFSLKING 155 + L + + ++ RG ++ I + + E I + NG Sbjct: 637 LQLAMRNLLSNAVKYTRGRDPARIHIDAEQTDAETIVRIADNG 679 >gi|5052340|gb|AAD38510.1|AF133262_2 histidine protein kinase-response regulator hybrid protein CvgSY [Pseudomonas syringae pv. syringae] Length = 671 Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 19/145 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 305 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQDASKRAASLTHRL--LAFSRR 362 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I ++ V ID + LLNL + Sbjct: 363 QTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWSTFIDAPQLE-NALLNLCIN 421 Query: 126 AHASLPRGGKVTISVQDSKNENIFS 150 A ++PRGG++TI + + S Sbjct: 422 ARDAMPRGGRITIETANRWTDERGS 446 >gi|146283794|ref|YP_001173947.1| hypothetical protein PST_3477 [Pseudomonas stutzeri A1501] gi|145571999|gb|ABP81105.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 762 Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 12/146 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 L L AL L + I H+ + + ++ L+L + + + I SA + Sbjct: 384 LQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRL 443 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR--ERAK-- 117 R ++ S + D+ +I A+ RV ++ + + + Sbjct: 444 TRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTVLDPVQCE 503 Query: 118 -ILLNLFMVAHASLPRGGKVTISVQD 142 +LNL + A ++P GG + I++ Sbjct: 504 LAVLNLAINARDAMPEGGPLVIALHQ 529 >gi|88855870|ref|ZP_01130532.1| two-component system, sensor protein [marine actinobacterium PHSC20C1] gi|88814737|gb|EAR24597.1| two-component system, sensor protein [marine actinobacterium PHSC20C1] Length = 449 Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 28/217 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H++ +P+ A+ LEL E + S+ +++ RL LA Sbjct: 235 HELRTPLAALKTQLELAHADFGNAEALASQLTSAEASVNRLT--SLASNLLELSRLETES 292 Query: 84 GDIEQVIED----FIAVDKRVQVSWTGEKIDL----------------SRERAKILLNLF 123 + E D F+ R ++ + + ++ +++ NL Sbjct: 293 SEAETTAGDLIDEFMGSIDRARLLGMVKSAQVELDVTVGDESVTYGVAAQAFGRLIDNLL 352 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID--S 178 A A++P GG+V ++ + ++ G P F + + T Sbjct: 353 SNALAAIPAGGEVVATLHQDSTQLQLDVRDTGPGMPDDFIPIAFDRFSRPDNSRTASTGG 412 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V +A E I+ V + L K Sbjct: 413 SGLGLALVHAIATAAHGSASVENIESGLRV-TVTLPK 448 >gi|26987749|ref|NP_743174.1| integral membrane sensor signal transduction histidine kinase [Pseudomonas putida KT2440] gi|24982440|gb|AAN66638.1|AE016291_7 sensor histidine kinase [Pseudomonas putida KT2440] Length = 484 Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 38/218 (17%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 + L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K + Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 + L + +++ + D R+ V + A + + NL Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182 ++ G + + + D + + G + +E + H Q Sbjct: 393 NAIKYGERARLRIIDGAEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443 Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + + ++ L + Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481 >gi|149916863|ref|ZP_01905364.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] gi|149822141|gb|EDM81532.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1] Length = 719 Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 15/175 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70 LL S + HD + + I + +LL G E+ + + + +A ++ F R Sbjct: 355 LLASGVAHDFNNILMGIMGAADLLTATSEGNTRELAETVVEGAETAASLIQRLLDFSRKG 414 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127 +VD + D +++E + +Q + + ++ LLNL + + Sbjct: 415 QRVERAVDVHAVIRDTARLLERAVERRVEIQCRLEASSHTVRGDAHQLQSALLNLGVNSR 474 Query: 128 ASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTI 176 ++P GG + T+ V ++ + G E + +DG+ + I Sbjct: 475 DAMPEGGTLRFQTRTVVVGEAGLATRTGMLAAGAYLEISVEDTGEGMDGDTATKI 529 >gi|300087966|ref|YP_003758488.1| histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527699|gb|ADJ26167.1| histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 298 Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRL-KFMRLAFGYTGSVDS 79 H++ +P+ AI S EL + D + L I ++ + R + + ++ G G + Sbjct: 79 HELKTPLTAILASTELFVDELKNDRRLPLAQNIYQAAKNLDRRTDELLDVSRGEIGLLSV 138 Query: 80 LIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHA 128 I+ ++E+ I D R ++S + + +R ++L N A Sbjct: 139 SPKTEQIKPLLENTIEILRPAAVRKNHDLRSEISDDLPPVAVDEDRLGQVLYNYLANAIK 198 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 P GG++ + ++E I + NG PE ++ + Sbjct: 199 YTPAGGRIILRAFSRRDELIVEVTDNGPGI-TPEGQRRLFEP 239 >gi|218780262|ref|YP_002431580.1| multi-sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761646|gb|ACL04112.1| multi-sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 504 Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 19/155 (12%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSMSAIIRLKFM-------RL 69 +++ H++ SP+ I L L+ + +++ Q L+ + + + R+ Sbjct: 275 AKVSHELRSPLATIREQLALVIQGVVDEATEQEQYLLSRAKDKTQSLIDLIGDLLDVSRI 334 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRERAKILL------ 120 G + + ++ I DF+ + ++ T L + R + Sbjct: 335 ECGNVAQQQVPLQVEELLSSIVDFMQAKAKAKNQELGVTLPASPLPKMRVDPMALESVFG 394 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL A P GG VT+ V + ++ G Sbjct: 395 NLVANAINYTPEGGSVTVEVGGDEKAIQVTVADTG 429 >gi|4376185|gb|AAC61655.2| hybrid histidine protein kinase-phosphate acceptor regulatory protein CvgSY [Pseudomonas syringae pv. syringae] Length = 600 Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 234 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 291 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I V+ V ID + LLNL + Sbjct: 292 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 350 Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++PRGG++TI + +E + + G I+ F+ Sbjct: 351 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 410 Query: 185 YVILLAHENKIRLL 198 L + L Sbjct: 411 TTKPLGQGTGLGLS 424 >gi|330957621|gb|EGH57881.1| sensor histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 398 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 31/215 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI S ELL +++ +Q+ I S A L F R G+ Sbjct: 183 HDLRNPLFAITASAELLQRHTPDEKTLQIARHILTSGKRASQLVDDVLDFARGRMGH--- 239 Query: 77 VDSLIGLGDIEQV---IEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125 + + D E + +E ++ +RV E+I ER A++L NL Sbjct: 240 -GIPLSIHDAEGLDNTLEHVVSEIQRVYPSRLIESGIGRLERIRCDHERIAQLLSNLV-- 296 Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI-- 181 ++ G + V +F L + PE + + D+ Sbjct: 297 -SNAITHGDADSPVQVAAEVQGELFLLSVTNQGEPIPECVRSRLFQPYSRPVTDAPQAGL 355 Query: 182 --QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 Y +A + L + + + + Sbjct: 356 GLGLYIASEIALAHGGTLSVCSTREQGTIFTFSMP 390 >gi|307634983|gb|ADI84948.2| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 388 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 20/210 (9%) Query: 24 HDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGSV 77 HD+I+ +G +H LL E GI E + + RL +L G Sbjct: 178 HDVINTVGGLHGIAALLAEGKGISPEKEAEYKEWMVHLSNRLIDEINHHRKLLAAEKGEF 237 Query: 78 DSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 +G+ D++Q+ + IA +R+ + E +S + +IL NL A Sbjct: 238 RPDLGMVDVQQLAREVQALYVNHDIAQGRRLVLGPLAELTIVSDLQILRRILGNLVKNAL 297 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYV 186 + P GG VTI+ + + F++ G + PE QI + + I Y V Sbjct: 298 EATPEGGTVTIAARQEGDGVSFTVHNPGLI--PPEVQLQIFQRSFSTKEGTGRGIGTYSV 355 Query: 187 ILLAHEN-KIRLLPEIIDDHNVVLSALLEK 215 L K + + +A + Sbjct: 356 RLFGERYLKGTITFTSTEREGTTFTASFPR 385 >gi|282861007|ref|ZP_06270073.1| histidine kinase [Streptomyces sp. ACTE] gi|282564743|gb|EFB70279.1| histidine kinase [Streptomyces sp. ACTE] Length = 528 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 16/166 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 H++ +P+ AI E+L++ + L+ + + + R G Sbjct: 282 HELRTPLTAITAVAEVLEDEADSLDPMIAPAVHLVVSETRRLNDLVENLMEVTRFDAGTA 341 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133 V + + D D A V + E+ ++R + ++ + L + +L G Sbjct: 342 RLVLDTVDVADQVTACIDARAWLDAVDLD--AERGLMARLDPRRLDVILANLIGNALKHG 399 Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST 175 G V ++V+ +E ++ +G P F + + Sbjct: 400 GSPVRVAVRADDDELTIEVRDHGPGVPEEVLPHVFDRFYKASASRP 445 >gi|86361238|ref|YP_473125.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86285340|gb|ABC94398.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 623 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78 + HD + + I +LE++++ + ++R + +A L LAFG Sbjct: 260 LAHDFNNLLTVISGNLEMIEDKLPPGSLRDILREAQAAAQDGAILTGQLLAFGRRQPLNP 319 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 LG + D + + +++S + DLS + +LN+ + A ++P Sbjct: 320 KHADLGQLVTGFADLLRRTLGEDIKLSTIIDGSDLSVLVDSSQLQNAILNIALNARDAMP 379 Query: 132 RGGKVTISVQ 141 +GG +T ++ Sbjct: 380 KGGSLTTTIS 389 >gi|152966751|ref|YP_001362535.1| integral membrane sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] gi|151361268|gb|ABS04271.1| integral membrane sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] Length = 501 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 32/213 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 H++ +P+ + LELLD D + L+ + L + Sbjct: 275 HELRTPLTIVQGHLELLDVDDPRDVTDTRDLVLDELSRMTRLVD--DLTLLAKARRPDFV 332 Query: 82 GLG--DIEQVIEDFI-----------AVDKRVQVSWTGEKIDLSRERAKILLNLF----- 123 L + ++++D V++R +V+ + L++ +++ N Sbjct: 333 TLQAVEAGRLLDDVYDKVVPLGERQWRVEERAEVTVQADGQRLTQAVLQLVSNAVKFTRP 392 Query: 124 --MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 ++A S RGG++ + V+DS G+L R E+F + G ++ + Sbjct: 393 GDLIALGSAVRGGELHLRVRDSGPGI-----AAGDLDRIFERFGRAETGR---GVEGSGL 444 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A + R+ + +L Sbjct: 445 GLSIVTAIAEAHGGRVDVSSAPGLGSSFAVVLP 477 >gi|237799140|ref|ZP_04587601.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021995|gb|EGI02052.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 693 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 21/139 (15%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + + ++ + S++ L LAF S Sbjct: 319 IAHDFNNLLAGISGSLELITKRLSQGRAGEVDRYLSVAQSAVRRAASLTHRLLAF----S 374 Query: 77 VDSLIGLGD--IEQVIEDFIAVDKR-----VQVSWTGEKIDLSR--ERAKI---LLNLFM 124 + + + +I+D + R + + + + A++ LLNL + Sbjct: 375 RRQTLSPKETDVNALIKDMQELITRSVGPEIDIKVVAQNDLWPALIDHAQLESSLLNLCL 434 Query: 125 VAHASLPRGGKVTISVQDS 143 A ++P GG++ I ++ Sbjct: 435 NARDAMPNGGRILIETANA 453 >gi|182436429|ref|YP_001824148.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464945|dbj|BAG19465.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 509 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 17/207 (8%) Query: 24 HDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 H++ +P+ AI E+L++ + + L+ + + + R G Sbjct: 283 HELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVSETRRLNDLVENLMEVTRFDAGTA 342 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133 V + + D D A V + E+ + R + ++ + L + +L G Sbjct: 343 RLVLDTVDVADQVTACIDARAWLDAVNLD--AERGMMVRLDPRRLDVILANLIGNALKHG 400 Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188 G V + V+ E + ++ +G P F + + + + + Sbjct: 401 GSPVDVRVRTEGEELVIEVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALE 460 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLEK 215 AH + + D V L + Sbjct: 461 NAHIHGGDITAANSPDGGAVFELRLPR 487 >gi|153007202|ref|YP_001381527.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030775|gb|ABS28543.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 514 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 17/210 (8%) Query: 22 ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF----GY 73 I HD+ +P+ AI+N LL ++ + + S ++ + A G Sbjct: 294 ISHDLRTPLNAIYNQAHLLRRYPNDAARVEARAAAVLKSCERMSAMIQDLVEATLLEDGQ 353 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAH 127 + L + + V DL R A +I++NL A Sbjct: 354 LQISPEPVDLAAAVPELLERFHGAIDVDRVRLVVHPDLPRALADPQRLERIVVNLLTNAL 413 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFY 184 P G+V + + + + G P F + + + Y Sbjct: 414 KYSPPQGEVVLELAPAPEGVAIVVTDRGVGIAPEDVPHVFDRFFRARGARQPEGLGLGLY 473 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L + R+ +L Sbjct: 474 ITRHLVQAHGGRIEVSSRLGQGSTFRVVLP 503 >gi|217419465|ref|ZP_03450971.1| sensor histidine kinase [Burkholderia pseudomallei 576] gi|217396769|gb|EEC36785.1| sensor histidine kinase [Burkholderia pseudomallei 576] Length = 627 Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91 +D + +++ LI S A+ R++ F R +G + L + Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442 Query: 92 DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + E L + +++ +NL + A S+ G +TI + Sbjct: 443 NVVHNELKYKADIVLEYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203 S+ G + +I D + I + + R+ E Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 561 Query: 204 DHNVVLSALLE 214 L+ L Sbjct: 562 GRGSTLTVTLP 572 >gi|294146511|ref|YP_003559177.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292676928|dbj|BAI98445.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 670 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 18/152 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM--RL-AFGYTGSVDSL 80 HD + + I SL+LL G+ + + + ++ + R K + RL AF Sbjct: 323 HDFNNLLTPIVGSLDLLHRRGLGTDRERRLIEGALQSADRAKMLVQRLLAF--ARRQPLQ 380 Query: 81 IGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAKI------LLNLFMVAHAS 129 DI ++ D RVQV + L A LLNL + A + Sbjct: 381 PTAIDIGGLVRDMRDLIVSTSGPRVQVELAVAEG-LPAAHADANQIEMALLNLAVNARDA 439 Query: 130 LPRGGKVTISVQDSKNENIFSLKI-NGNLARF 160 +P GG++ I V L++ G R Sbjct: 440 MPDGGQLRIGVTCDSMAADNRLRLREGRYVRL 471 >gi|283851241|ref|ZP_06368524.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283573410|gb|EFC21387.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 457 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 15/156 (9%) Query: 18 LCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 + + I HD+ P+ I + LE+ + + ++ + I M+ L + Sbjct: 240 VSNNIAHDLRGPLNRIRSGLEMSLARIRTEEEYRAVLEQTIAEIDGLLMTFNALLTIAQA 299 Query: 70 AFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 G + + L GD+ ++ E + + R ++ L NL Sbjct: 300 ESGARRQDFTDVDLTGLAGDVAELYEPLAEEKDLAFHVALAPGVTVPGNRHLLSQALANL 359 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P GG +T+++ ++ G Sbjct: 360 LDNAVKYTPAGGAITVTLGAPSTGPELAVADTGPGI 395 >gi|149278397|ref|ZP_01884534.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39] gi|149230767|gb|EDM36149.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39] Length = 444 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 21/156 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRL 69 L S + HD+ P+ +I LE+L+ +G+E+E QLI R +S + L + + Sbjct: 225 LFSIVAHDVRMPLSSIQGYLEILNGIGLEEEEKQLIEGQLLQITRDTSEMLMNLLSWSKA 284 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL--------- 120 + + D+ + D++ V+K + L+ + I+ Sbjct: 285 ---QLNGMSIKLKPMDVNATLRDWLKVEKSIAAKKGIRLAILTAGQLNIMADHDMLHLVV 341 Query: 121 -NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 NL A P GG+V IS + ++ + + NG Sbjct: 342 RNLVSNALKFTPEGGEVVISTRYRESNGVIVISDNG 377 >gi|118591973|ref|ZP_01549367.1| probable two-component sensor histidine kinase protein [Stappia aggregata IAM 12614] gi|118435269|gb|EAV41916.1| probable two-component sensor histidine kinase protein [Stappia aggregata IAM 12614] Length = 484 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 13/146 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEV---MQLIRLSSMS----AIIRLKFMR---LA 70 + H++ + IG I SL LL+ + G D + IR ++ A L R Sbjct: 263 LSHEVGNTIGIITGSLGLLERDGGFSDRQARNIARIRKAADRGRSLASSMLTIGRQQPAN 322 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILLNLFMVAHAS 129 G L G+ DI ++ ++++ + + L + +LNL + + A+ Sbjct: 323 LSRIGMSSLLRGMADILEIAIGE-KCSLKLELDDSLPPLVLDPELFEQSVLNLCLNSAAA 381 Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155 +P GG+V +S + + + S++ G Sbjct: 382 MPDGGEVRVSTFSTGDAVVVSVRDTG 407 >gi|319791369|ref|YP_004153009.1| signal transduction histidine kinase with cheb and cher activity [Variovorax paradoxus EPS] gi|315593832|gb|ADU34898.1| signal transduction histidine kinase with CheB and CheR activity [Variovorax paradoxus EPS] Length = 1370 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 22/195 (11%) Query: 24 HDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAII--------RLKFMRLAFGY 73 H++ P+ I + ELL + +Q + + A+ L R+ G Sbjct: 1019 HELKQPLNLIQMNAELLMHLPAAAQIPAVQRVGETIKRAVASQTRIINDLLDLSRIRTGK 1078 Query: 74 TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWT---GEKIDLSRERAK---ILLNLFMVA 126 + LG+ ++ V + +A + ++ E + +R + I NL A Sbjct: 1079 LRLSRVTVDLGELVQSVAQAAVADAPKKKLLLETHCDEAVHCHGDRVRVEQIAWNLLSNA 1138 Query: 127 HASLPRGGKVTISVQDSKNENIFSL--KINGNLARFPEKFTQIVD---GNVESTIDSHDI 181 P GG++++ V+ + ++ G A F + + G+ I Sbjct: 1139 VKFTPDGGRISVRVETEGDFARLTVADTGCGIAAEFLPHVFGMFNQADGDTALPNGGLGI 1198 Query: 182 QFYYVILLAHENKIR 196 V LA + R Sbjct: 1199 GLALVQELALAHGGR 1213 >gi|297568632|ref|YP_003689976.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924547|gb|ADH85357.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 793 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 21/148 (14%) Query: 42 EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFI 94 + + + +Q I S+ A + R Y+ + D+ ++++ I Sbjct: 447 DDEVSQDYLQEILDSARRAA---ELTRSLLAYSRKQQIELKPEDLGKTVEKNQKMLRRII 503 Query: 95 AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQ-DSKNENIFS 150 + +++ + + + +I L+NL A ++P GG++TI K + Sbjct: 504 RENIELKLELIDRPLPVMADHVQIEQVLMNLASNAQDAMPAGGRLTIGAGWQEKAPSELE 563 Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS 178 L G + + + ID Sbjct: 564 LVTAGP-------WAVLTMADTGFGIDP 584 >gi|186474188|ref|YP_001861530.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196520|gb|ACC74484.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 815 Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 15/177 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMRL-AFGYTG 75 HD + + + +LELL + ++ + S A L F R A Sbjct: 318 HDFNNVLQVLRGNLELLGARHDDAWSRSRIGRAIEAVERGSKLASHLLAFGRQQALQPAA 377 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK------ILLNLFMVAHAS 129 S + L ++E ++ + RV++ + +L +LLNL + + + Sbjct: 378 SHLGHV-LHNMEDLLRRALGERVRVRIHESLGGGELWNVMVDTHQLENVLLNLAINSRDA 436 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +P GG +T + ++ + +L + + + + +Y Sbjct: 437 MPEGGMLTFGLSNAVLDAKAALTAQIEPGEYVKMTVTDTGTGMSPDVAGRAFDPFYT 493 >gi|323528130|ref|YP_004230282.1| integral membrane sensor signal transduction histidine kinase [Burkholderia sp. CCGE1001] gi|323385132|gb|ADX57222.1| integral membrane sensor signal transduction histidine kinase [Burkholderia sp. CCGE1001] Length = 494 Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 17/205 (8%) Query: 18 LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + ++I H+I +P GA+ E L + + ++ I +++ + Sbjct: 282 MAAQIAHEIRNPAGAMRLKAENALAGDGARREAALRTIIEQVARIELQVTSLLALTQSVT 341 Query: 76 SVDSLIGLGD-IEQVIEDFIAVDK------RVQVSWTGEKIDL-SRERAKILLNLFMVAH 127 + L ++ + + + +V+ + + A+ L NL + A Sbjct: 342 VRPCEVDLRAWLDDIAHTHESRAESRHVTLGAEVAQNPTRPVFDPAQMARALDNLLVNAL 401 Query: 128 ASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 P GG VT+ +V + NG R P + +I + V + + Sbjct: 402 RHAPSGGNVTVRAYCAVAQGGERLRLEVIDNGAGVR-PAERERIFEPFVTGRPEGSGLGL 460 Query: 184 YYVILLAHENKIRLLPEIIDDHNVV 208 V +A + R + +D NV Sbjct: 461 AVVREIASAHGGR--AYLAEDSNVT 483 >gi|218667716|ref|YP_002426712.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519929|gb|ACK80515.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 423 Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 +LL + I HD+ SP+ + + ELL + + +++ L LA G Sbjct: 220 SLLLTGISHDLRSPLARLRMAWELLPDNTPQHLREGMLQD-IERMDALLA-QSLALG--R 275 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPR 132 + + + D+ ++ + A +R W + +R + L + +L Sbjct: 276 GMSAKVADFDLMVLLAEVGADFEREGGHWQATLPRRYPFRGDREALRRLLSNLLDNALRY 335 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH------DIQFYYV 186 GG + + K + L++ PE + V D+ + Sbjct: 336 GGG-RVRAEFQKTQGRTQLRLCDEGPGVPEADLETVFEPFIRLDDARGHGEGSGLGLAIA 394 Query: 187 ILLAHENKIRL 197 LA +RL Sbjct: 395 RQLAEAQGMRL 405 >gi|71733597|ref|YP_274800.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554150|gb|AAZ33361.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 652 Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 289 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 348 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 349 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 406 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 407 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 463 Query: 183 FYYV 186 ++ Sbjct: 464 PFFT 467 >gi|5019771|gb|AAD37857.1|AF133263_2 histidine protein kinase-response regulator hybrid protein CvgSY [Pseudomonas syringae pv. syringae] Length = 671 Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 19/145 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 305 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQDASKRAASLTHRL--LAFSRR 362 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I ++ V ID + LLNL + Sbjct: 363 QTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWSTFIDAPQLE-NALLNLCIN 421 Query: 126 AHASLPRGGKVTISVQDSKNENIFS 150 A ++PRGG++TI + + S Sbjct: 422 ARDAMPRGGRITIETANRWTDERGS 446 >gi|270261002|ref|ZP_06189275.1| hypothetical protein SOD_a02270 [Serratia odorifera 4Rx13] gi|270044486|gb|EFA17577.1| hypothetical protein SOD_a02270 [Serratia odorifera 4Rx13] Length = 488 Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 18/155 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIE----------DEVMQLIRLSSMSAIIRLKFMRLAF 71 I HD+ +P+ ++H LE L + + R A + RL + Sbjct: 274 ISHDLRTPLTSLHGYLETLSVKSASLSENDRRRYLETALAQSRKVGKLAQELFELARLEY 333 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA---KILLNLF 123 G LG++ Q + A +R++ + + + ++L NL Sbjct: 334 GVVKPQKEPFSLGELVQDVFQKFELAAEARHQRLRADIAPGMPLVFADLSMIERVLTNLL 393 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 A P+GG++ + + +N+ + + +G Sbjct: 394 DNAIRHTPQGGEIGVRLWQQENKILVQVNDSGPGI 428 >gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 786 Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 38/215 (17%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAI----IRL 64 + +A+L H++ +P+ AI N++ L + G + ++L I + + L Sbjct: 422 EFLAMLG----HELRNPLSAIANAVRLWNVAGDDHSAVELAHGVIERQTDNLSRLVDDLL 477 Query: 65 KFMRLAFGYTGSVDSLIGLGD-IEQVIED--------------FIAVDKRVQVSWTGEKI 109 R+ G + + + I +V+E + D ++ V ++ Sbjct: 478 DVARITEGKIELRKRPVDVNESIHRVVEALRPAIDQQRHELQLLLENDAKIWVDADPTRV 537 Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQ 166 + +I+ NL A +GG++ I + +E + S+ G P+ F Sbjct: 538 E------QIISNLLTNAIKYTRKGGEIRIEARREGHEAVISVNDTGIGIAPRMLPQIFDL 591 Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLP 199 G+ ++ I L + + Sbjct: 592 FTQGDHSLDRPTGGLGIGLSLCRRLVELHGGTITA 626 >gi|320104996|ref|YP_004180587.1| histidine kinase [Isosphaera pallida ATCC 43644] gi|319752278|gb|ADV64038.1| histidine kinase [Isosphaera pallida ATCC 43644] Length = 312 Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 26/221 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEV--GIED----EVMQLIRLSSMSAIIRLK---- 65 A + + H+I +P+ + +L+LL E G + + I +RL+ Sbjct: 53 ARIAGGLAHEIRNPLSTMRLNLDLLAEEFRGSDSIRDRRALTKIER-LRKETLRLQNVLE 111 Query: 66 -FMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115 F+R A V+ + + + + RV L + Sbjct: 112 DFLRFAHLERIQPVDQPLAAVVNEVCDFWEPQAQAHGIVV---RVYHDPQPSCSPLDADL 168 Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 K +LNL + A ++P GG++ + + + N+ + G ++ + + Sbjct: 169 FKQAILNLLLNAQQAMPDGGELMLITRRAGAWNVLEVVDTGVGI-PASLRDKVFEPFQTT 227 Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + V + + R+ E + L + Sbjct: 228 KPGGSGLGLPMVRRIVEAHGGRIAFESEPGKGTKFTIWLPR 268 >gi|217970661|ref|YP_002355895.1| histidine kinase [Thauera sp. MZ1T] gi|217507988|gb|ACK54999.1| histidine kinase [Thauera sp. MZ1T] Length = 471 Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 23/213 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 AL+ + + HD+ +P+ + +E+ +DEV ++ I +F+ G Sbjct: 246 ALILAGVSHDLRTPLARLRLGIEM--SGAPDDEVTAMVADIGEMDRIIGQFLDFGRGDAQ 303 Query: 76 SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130 + I L +V E + V + + + RA + L NL +L Sbjct: 304 EPTAAIDLATLAREVTEPYRLRG--VDLRLEVPESLFVQARALSIRRALANLI---DNAL 358 Query: 131 PRGG-----KVTISVQDSKNENIFSLKING----NLARFPEKFTQIVDGNVESTIDSHDI 181 G +VT+S++D + + + G + R + FT++ + + Sbjct: 359 RYAGGNAPLEVTVSIEDGQARIEVADRGPGIPESEIERMRQPFTRLEKARSNTK--GAGL 416 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + ++ RL D + + L Sbjct: 417 GLAIVDRVMRAHQGRLELSARDGGGLRAALCLP 449 >gi|167523437|ref|XP_001746055.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775326|gb|EDQ88950.1| predicted protein [Monosiga brevicollis MX1] Length = 288 Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 132 RGGKVTISVQDSKNENIFSLK-INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 RG +T+S + + G RFP + D + +H I Y A Sbjct: 194 RGADLTVSPVHRAGHGLVPGREAAGISLRFPRFIRERPDKTMSEATTAHQIVELYQQQFA 253 Query: 191 HENKIRLLPEIIDDHN 206 RL+ + D Sbjct: 254 PAASRRLVGDEADAER 269 >gi|240139593|ref|YP_002964069.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens AM1] gi|240009566|gb|ACS40792.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens AM1] Length = 622 Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 38/224 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + AI SLEL+ + ++ + ++ A R L F R Sbjct: 269 IAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNATGAAQRGSALTKRLLSFSR----- 323 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK------ILLNL 122 S D+ D +IE A+ V V E D+ +LNL Sbjct: 324 --SNDAHARPVDPNALIEGMSALFGSSLGGHVSVVRDLEP-DMPFALVDPDQLELAVLNL 380 Query: 123 FMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGNLARFPEKFTQIVDGNVE 173 + A ++P GG VTIS + ++ + PE ++ + Sbjct: 381 CINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTGIPPEILERVCEPFFT 440 Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ LA + RL + L + Sbjct: 441 TKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|222081551|ref|YP_002540915.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221726230|gb|ACM29319.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 674 Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 24/158 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS----AIIRLKFMR 68 + + + H+I +PI + +LE++ + +LI L+F + Sbjct: 457 ITAGVAHEINNPIAVMQGNLEVIREVMGSDADNASTEFRLIDQQMHRISEIVTKLLQFAK 516 Query: 69 LA--------FGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-I 118 + G V + L + + + + R I +SR + + Sbjct: 517 PQEYSGYSEHYAAAGIVSDTLPLVQHLLKKTTIALEREDRA-----LRPIMMSRTELQQV 571 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 L+NL + A ++P GG++T+ DS + + I Sbjct: 572 LVNLIVNAIHAMPNGGRLTLRTIDSDMDGQAGVAIQVE 609 >gi|300088098|ref|YP_003758620.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527831|gb|ADJ26299.1| PAS/PAC sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 407 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 15/150 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76 H++ +P+ + S E+L ++ + ++L I +++ R L F R G Sbjct: 191 HELKTPLTPMIASGEVLLDILEGENELRLAGNIYRGAINLERRINDLLDFARGEMGVLKV 250 Query: 77 VDSLIG-----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128 + L +V F + +++ +S + ++ LLNL A Sbjct: 251 TRQPLDISPILLDLAAEVSPQFDRKQQSLELCLPDRLPAVSADEDRLRQILLNLLTNAGK 310 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158 PRGG++ I + N S+ NG Sbjct: 311 FTPRGGQIIIGAKVDGNMLQLSVADNGRGI 340 >gi|190575962|ref|YP_001973807.1| putative sensor histidine kinase two component transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190013884|emb|CAQ47522.1| putative sensor histidine kinase two component transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 347 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 8/124 (6%) Query: 66 FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDL-SRERAKILL-- 120 R A G +L ++ + + + + + +R+QV W ++ +++L Sbjct: 197 LFRAALGAGEGDSTLRDECELAERYLSIESLRLGERLQVRWERDEPLPWDLPLPRLVLQP 256 Query: 121 ---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 N + + LP GG + + + NE ++ + P G+ + +I Sbjct: 257 LVENAVLHGISRLPEGGTIELQLVREGNELQIRVRNPAPDPQAPGLALARGAGHAQHSIA 316 Query: 178 SHDI 181 + Sbjct: 317 HRLV 320 >gi|307330574|ref|ZP_07609714.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306883730|gb|EFN14776.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 556 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 15/205 (7%) Query: 24 HDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 H++ +P+ AI E+L+E +QL+ + + + R G Sbjct: 289 HELRTPLTAITAVSEVLEEEADSLDPMIAPAVQLVVSETRRLNDLVENLMEVTRFDAGTA 348 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 V + + D D A V++ I + ++ + L + +L GG Sbjct: 349 RLVLDDVDVADQVTACIDARAWLDAVELD-AARGIVAPLDPRRLDVILANLIGNALKHGG 407 Query: 135 K-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVILL 189 V +SV+ +E + ++ +G P F + + + + + Sbjct: 408 SPVRVSVRTDGDELLIKVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAMEN 467 Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214 AH + + + V + L Sbjct: 468 AHIHGGDISAANSPEGGAVFALRLP 492 >gi|239832007|ref|ZP_04680336.1| Nitrogen regulation protein ntrB [Ochrobactrum intermedium LMG 3301] gi|239824274|gb|EEQ95842.1| Nitrogen regulation protein ntrB [Ochrobactrum intermedium LMG 3301] Length = 371 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITDETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + ++ A R + + R ++ L Sbjct: 194 ---SDERPIERSAVNIHAVLDHVKAIAKNGFARKIRFVEDYDPSLPPVFANRDQLVQVFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 251 NLLKNASEAIGEREGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|194292695|ref|YP_002008602.1| senson histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193226599|emb|CAQ72550.1| putative SENSOR HISTIDINE KINASE with CHASE2 domain [Cupriavidus taiwanensis LMG 19424] Length = 805 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 32/222 (14%) Query: 22 ICHDIISPIGAIHNSLELLD-----------EVGIEDEVMQLIRLSSMSAIIR----LKF 66 + HD+ SP +I +EL + + + V+ I + + + Sbjct: 581 LSHDMRSPQASILALIELQERRAGHAATSAGDGAPDSGVLARIAAHARRTLALADDFISV 640 Query: 67 MR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKI 118 R LAF ++ D + A + +Q+ + L + Sbjct: 641 ARAESKALAFIEVELGGLVLDATDQLWALAR--AREVSLQIDLPDDPAVLQGEPALLVRA 698 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK------INGNLARFPEKFTQIVDGNV 172 + NL A P GG VT+S+ + +++ + + AR E F ++ +G Sbjct: 699 IANLVSNAIKFSPAGGTVTVSLAREPERFVVAVQDHGPGIADADQARLFEPFARLHEGQP 758 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V +A + + V L Sbjct: 759 -GAPEGTGLGLVLVRAVAERHGGQASVRSQAGMGAVFRIELP 799 >gi|170749966|ref|YP_001756226.1| histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656488|gb|ACB25543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 539 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 27/186 (14%) Query: 22 ICHD-------IISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFGY 73 I HD I+ + + LE D + IR ++ A + + LAF Sbjct: 170 IAHDFNNLLQVIVGYVDILAAGLEKPDADRARLGRATENIRQAAERATTLTQQL-LAF-- 226 Query: 74 TGSVDSLIGLGDIE--QVIEDFIAVDKR-------VQVSWTGE----KIDLSRERAKILL 120 + + + +IE + R V++ + ++D ++ +L Sbjct: 227 --ARKQRLDGRAVNLNTLIEGMGEMVARSVGEAVKVELDLAPDLWNCRVDPTQAEV-AIL 283 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 N+ + A ++P GG V IS ++S+ + R+ + + + + Sbjct: 284 NVLINARDAMPEGGTVRISTENSEVASRGREIGPLRDGRYVSIAIKDTGTGIPPAVLARV 343 Query: 181 IQFYYV 186 + ++ Sbjct: 344 MDPFFT 349 >gi|145593183|ref|YP_001157480.1| integral membrane sensor signal transduction histidine kinase [Salinispora tropica CNB-440] gi|145302520|gb|ABP53102.1| integral membrane sensor signal transduction histidine kinase [Salinispora tropica CNB-440] Length = 369 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 26/213 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS---L 80 H++ +P+ I LE ++ D+ ++ + RL RLA + Sbjct: 154 HELRTPLATIEAYLEAAEDGVAVDDED--LQSVLRAQTDRLH--RLADDIAAVSRAETHQ 209 Query: 81 IGLGDIEQVIEDFIAVD--------------KRVQVSWTGEKIDLSRERAKILLNLFMVA 126 + L + D + R + + + + ++L NL A Sbjct: 210 LDLHPVRTAPGDLVRDAVAAAWPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLDNA 269 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDSHDI 181 P GG VT+ V ++ G P F + D + I Sbjct: 270 LRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHIFERFYRVDTARDRGNGGSGI 329 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + R+ E + ++ +L Sbjct: 330 GLAIVRAVVSAHGGRVRAENVPGGGAMVKVVLP 362 >gi|46579345|ref|YP_010153.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|46448759|gb|AAS95412.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough] gi|311233171|gb|ADP86025.1| histidine kinase [Desulfovibrio vulgaris RCH1] Length = 391 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 19/208 (9%) Query: 24 HDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 HD+++ G + + L + D M L+ + + + + R+ + + + Sbjct: 172 HDLLNMAGGLRSISGLLVEDVPLDVRADMLLVHRYATALVEEILAQRV-LVAAENDELGV 230 Query: 82 GLGD--IEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128 L D +V+ D I +DKR+ + G + +S +R ++L NL A Sbjct: 231 ELRDVQAREVLRDVIELYRTHEACIDKRLVMEPCGGHLLISTDRVLLARVLGNLVKNALE 290 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 + PRGG VT + + + F + G ++ PE Q+ + + + Y V L Sbjct: 291 ASPRGGVVTAGCEATPSGVTFRVHNAGFIS--PEVRAQMFQRSFSTKGQGRGLGMYGVRL 348 Query: 189 LAHEN-KIRLLPEIIDDHNVVLSALLEK 215 L R+ D L +L + Sbjct: 349 LTGNYLGGRVECLSSRDSGTTLLVILPR 376 >gi|289676946|ref|ZP_06497836.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 394 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ Q+++ S A L F R G+ Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKAQQVVQHILTSGQRASQLVDDVLDFARGRMGH--- 239 Query: 77 VDSLIGLGDI---EQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125 + + + ++ +E I+ +RV E+I ER A++L NL Sbjct: 240 -GIPLSIHEAPGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 296 Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179 ++ G + + V + +F L + PE + I Sbjct: 297 -SNAISHGDAESPVEVTAGVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y +A + L + V + + Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390 >gi|218295265|ref|ZP_03496101.1| histidine kinase [Thermus aquaticus Y51MC23] gi|218244468|gb|EED10993.1| histidine kinase [Thermus aquaticus Y51MC23] Length = 722 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 70/192 (36%), Gaps = 18/192 (9%) Query: 24 HDIISPIGAIHNSLEL-LDEVGIEDEVMQLI---RLSSMSAIIRLKFMRLAFGYTGSVDS 79 H+I +P+ ++ +LEL L+ G+ +E +L+ S+ L+ + V Sbjct: 100 HEIKNPLMSVLGALELALETEGLPEEAKELLQIAEKSARRIQELLQKAQDYLKLGQGVRL 159 Query: 80 LIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHA 128 + D++ +++ + R+ + W + R+ + +LN+ A Sbjct: 160 KVERVDLKALLQQAAEEVRPLARRKRIALRLTLPWGEAWVYGDRDWLYQAILNVLSNAVK 219 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYY 185 P GG+V + + ++ ++ G E F + ++ + Sbjct: 220 YTPEGGRVAVRLLLGRDRYGIAVADTGPGIPKEEQDKVFEPFYRASTRGEVEGTGLGLAL 279 Query: 186 VILLAHENKIRL 197 V + + + Sbjct: 280 VKRVLEAHGGEV 291 >gi|146281504|ref|YP_001171657.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145569709|gb|ABP78815.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 678 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIR----LKFM 67 L S + HD + +G I SL LL+ + L R S+ A L F Sbjct: 307 LTSGLAHDFNNLLGGIVGSLGLLERRLDQGRHDDLRRHLANAQSSADRAAALTHRLLAFS 366 Query: 68 R---LAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 R L T + + D+ ++ I +A + + + D ++ +LLNL Sbjct: 367 RRQPLQMRPTDGNALVSSMRDLLQRTIGPLVAFELMLADDLWLTRCDANQLE-NVLLNLA 425 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + A ++P GG++ IS + + ++ + ++ Sbjct: 426 LNARDAMPNGGRLRISTANRELDDAAAARL 455 >gi|160896897|ref|YP_001562479.1| anti-FecI sigma factor FecR [Delftia acidovorans SPH-1] gi|160362481|gb|ABX34094.1| anti-FecI sigma factor, FecR [Delftia acidovorans SPH-1] Length = 440 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 6/128 (4%) Query: 55 LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114 S +A+ R + G T + G + + W + + + Sbjct: 171 DSVEAALRRWR------GETAAPAPRTGRRRALSTLLGMAGLGVGSPAIWLAWRQWMPQY 224 Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174 + ++ + + LP G +T+ + ++ + L F D Sbjct: 225 QVRLATATGRLLNQPLPDGSSLTLDAASRAEVDFYATRRQVRLLAGSAFFAVARDTEWPF 284 Query: 175 TIDSHDIQ 182 + + D+Q Sbjct: 285 MVQAADVQ 292 >gi|39997287|ref|NP_953238.1| sensor histidine kinase [Geobacter sulfurreducens PCA] gi|39984177|gb|AAR35565.1| sensor histidine kinase [Geobacter sulfurreducens PCA] Length = 395 Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 20/210 (9%) Query: 24 HDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGSV 77 HD+I+ +G +H LL E GI E + + RL +L G Sbjct: 185 HDVINTVGGLHGIAALLAEGKGISPEKEAEYKEWMVHLSNRLIDEINHHRKLLAAEKGEF 244 Query: 78 DSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 +G+ D++Q+ + IA +R+ + E +S + +IL NL A Sbjct: 245 RPDLGMVDVQQLAREVQALYVNHDIAQGRRLVLGPLAELTIVSDLQILRRILGNLVKNAL 304 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYV 186 + P GG VTI+ + + F++ G + PE QI + + I Y V Sbjct: 305 EATPEGGTVTIAARQEGDGVSFTVHNPGLI--PPEVQLQIFQRSFSTKEGTGRGIGTYSV 362 Query: 187 ILLAHEN-KIRLLPEIIDDHNVVLSALLEK 215 L K + + +A + Sbjct: 363 RLFGERYLKGTITFTSTEREGTTFTASFPR 392 >gi|327482123|gb|AEA85433.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 743 Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 12/146 (8%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 L L AL L + I H+ + + ++ L+L + + + I SA + Sbjct: 365 LQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRL 424 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR--ERAK-- 117 R ++ S + D+ +I A+ RV ++ + + + Sbjct: 425 TRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTVLDPVQCE 484 Query: 118 -ILLNLFMVAHASLPRGGKVTISVQD 142 +LNL + A ++P GG + I++ Sbjct: 485 LAVLNLAINARDAMPEGGPLVIALHQ 510 >gi|260430745|ref|ZP_05784717.1| sensory box histidine kinase/response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260418186|gb|EEX11444.1| sensory box histidine kinase/response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 631 Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 14 LVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFM-RLA- 70 + A + S + HD S + I ++ L+++ + ++ +L+ + +A + + R+A Sbjct: 297 MAAQMTSGLAHDF-SNLLTIILGMQAKLEKMNLPEDAAELVAATQQTARRGGQLLNRIAD 355 Query: 71 -FGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNL 122 G L D+ + + + V L LLNL Sbjct: 356 MTGNRTPQPQATDMRGLLEDLRVLASPSLPRGVGLSVVNNLPDEALMLDPGMVQDALLNL 415 Query: 123 FMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170 + A + G++TIS + ++ G P+ + ++ Sbjct: 416 VLNARDACGSSGQITISAHAIGRIWVEITVSDTGPGFS-PDALDKALNP 463 >gi|330810422|ref|YP_004354884.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378530|gb|AEA69880.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 397 Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 18/149 (12%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTG 75 HD+ SP+GAI S E+L D ++ I S A L F R G Sbjct: 181 HDLRSPLGAILLSSEVLLRAGDLPAKATKITSRIYTSVKRANKIVGDLLDFTRTQLGSGI 240 Query: 76 SVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMVAH 127 V GD+ E + + R + + E ++ NL A Sbjct: 241 PVQRF--NGDLVAACEGMVEEARAYHPESEIRFETTGALEARFDPARMEQVFANLIGNAV 298 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGN 156 G VT+S+ K+ + ++ G Sbjct: 299 QHGAEGTPVTVSLSVEKDMAVIAINNQGK 327 >gi|262196464|ref|YP_003267673.1| signal transduction histidine kinase with CheB and CheR activity [Haliangium ochraceum DSM 14365] gi|262079811|gb|ACY15780.1| signal transduction histidine kinase with CheB and CheR activity [Haliangium ochraceum DSM 14365] Length = 2468 Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 18/159 (11%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI---IRLKFMRLAFGYTG 75 H++ +P+ AI + ELL + ++ + R S+ A L R+ G Sbjct: 2110 HELRNPLAAIRGAAELLLLSDGGGDELERTRGIIERQSAHMAKLIDGLLDVSRVVLGKIV 2169 Query: 76 SVDSLIGLGDI-EQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILL---NLFMVAH 127 ++ + +I +++D +R +++ GE I + +R ++ NL A Sbjct: 2170 LDSKVVDVVEILRDLMQDHADRIERSGLSLRLDLPGEPIWIDGDRVRLTQIFGNLLANAL 2229 Query: 128 ASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKF 164 G +TIS + S +++ A + Sbjct: 2230 QFTSAPGTITISAETIGSSPAGTALVRVRDTGAGIAPEL 2268 >gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 860 Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 30/220 (13%) Query: 22 ICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLS---SMSAIIRLKFMRLA 70 I H+ +P+ AI E+L E+ + S L Sbjct: 475 ISHEFRTPLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAE 534 Query: 71 FGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122 G + + +I + +F VS ++ L + +ILLNL Sbjct: 535 AGNPALTIEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNL 594 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-------IVDGNVEST 175 A + P GG +++ V+ + ++++ + G PE ++ GN + Sbjct: 595 LSNAVKATPPGGSISVRVEANSDKHVLVVSDTGMG--VPEHLVDRMTDPFTVIGGNAYHS 652 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 D + V L ++ L E VL A+ Sbjct: 653 RDGKGLGLAIVKSLVQRHRGDLRIESRT--ASVLVAIEPD 690 >gi|330820977|ref|YP_004349839.1| integral membrane sensor signal transduction histidine kinase [Burkholderia gladioli BSR3] gi|327372972|gb|AEA64327.1| integral membrane sensor signal transduction histidine kinase [Burkholderia gladioli BSR3] Length = 359 Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 5/144 (3%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 HD+ +P+ I E+LD+ + D + + + L R G S + Sbjct: 162 HDLRTPLTRIGLRSEMLDDTAMRDAMAGDLAEMNELVEASLACARTQSGGLESPRRVDAD 221 Query: 84 GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQ 141 + +++++ + V++ + ++ A ++L+NL +L G V + V+ Sbjct: 222 RMFDALVDNYHDAGRVVELDGRVGRPIVTCPHALRRVLMNLI---DNALRYGTDVRLRVR 278 Query: 142 DSKNENIFSLKINGNLARFPEKFT 165 + ++ +G + Sbjct: 279 VEAQHLVLAVLDSGPGIAPSQLAA 302 >gi|317487320|ref|ZP_07946114.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316921419|gb|EFV42711.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 579 Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 74/217 (34%), Gaps = 28/217 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGS 76 I H++ +P+ ++ + +L+ DE M ++ + RL +FM +A + Sbjct: 364 ISHELKTPMQSLGLAADLMARRPGLDEEMSMLVETVGQDAARLRTVARQFMEIARMSPSA 423 Query: 77 VDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKIDLS-----RERAKILLNLFMV 125 + + D+ + + +A + ++ + + D+ A +L NL Sbjct: 424 LQLVPDTVDLVERVREWLIPFQLVARESGERLLLSMPETDIPVTIDTERFAWVLSNLVSN 483 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV--------DGNVESTID 177 A G V I + + + + ++ +G PE ++ G E + Sbjct: 484 ALRVGSVGSTVRIVITQEEYDAVLRVEDDGPGI-PPELEARLFEPFSHGRTAGTREGLV- 541 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + LL Sbjct: 542 --GLGLAITRDIVEAHGGVIRYARNPGGGAIFTVLLP 576 >gi|219850583|ref|YP_002465016.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544842|gb|ACL26580.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 418 Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 71/190 (37%), Gaps = 20/190 (10%) Query: 37 LELLDEVGIEDEVMQLIRLSSM--SAIIRLKFMRLAFGYTGSVD-SLIGLGDIEQVIEDF 93 L LD G + +Q+I ++ + R + R A S+ + L +I ++ D Sbjct: 233 LLELDAEGEQRIDLQMIATAAEVGAMSAR-RLQRFA--QLESLHIQPVDLVEIARLAIDT 289 Query: 94 ----IAVDKRVQVSWTGEKIDLSRERAKILL----NLFMVAHASLPRGGKVTISVQDSKN 145 +A + ++ + + ++ +L L + A + P GG + + S Sbjct: 290 ATHKLAHHAALTITESLSTLPVAAGETNLLYTALTALIVAAAQANPDGGVIQV---GSGF 346 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205 + F + P+ + ++++ +H I+ A + +L E+ Sbjct: 347 DERFVWIEVADPGLPPDS--DLHSVSIQTQ-RAHTIELAIARQTARVHGGQLQIEVNTLR 403 Query: 206 NVVLSALLEK 215 V+ ++ + Sbjct: 404 GTVIRLMIPR 413 >gi|108761462|ref|YP_635109.1| response regulator/sensor histidine kinase AsgD [Myxococcus xanthus DK 1622] gi|108465342|gb|ABF90527.1| response regulator/sensor histidine kinase AsgD [Myxococcus xanthus DK 1622] Length = 773 Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 31/219 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKF--MRLAF 71 + HD+ +P+ AI S LL++ G E + + A R L F RL Sbjct: 558 VSHDLRNPLAAISMSAGLLEKKGALTEPQKRMVWRIGQATERAARMIRDLLDFTKARLGG 617 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKIDLSRERAKILLN 121 G + + QV+++ + V V+ W ++I A++L N Sbjct: 618 GIALHRQTTDLREVVHQVVDELLVANPGRRVEVEVQGEVRGEWDSDRI------AQVLTN 671 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDS 178 L A A P V + + + S+ G P F + G ++ + Sbjct: 672 LLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLPRLFEPLTRGALKEGQST 731 Query: 179 HDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I Y V + + + + H + L + Sbjct: 732 RSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVRLPR 770 >gi|297197901|ref|ZP_06915298.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|197717156|gb|EDY61190.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 518 Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 61/213 (28%), Gaps = 19/213 (8%) Query: 19 CSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLS----SMSAIIRLKFMRL 69 + + H++ +P+ A+ ++LDE ++LI + ++ R Sbjct: 296 AADVSHELRTPLAAMSAVTDVLDEDAARLDPDTATAVRLISEETVKLARLVDDLMEISRF 355 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVA 126 G I L + + + V D R ++ + + + Sbjct: 356 DAGAAVLHLDEIDLAE--SIRRTLASRGWTDTVETDLPPPDAVRGSVDPRRLDVVVANLV 413 Query: 127 HASLPRGGK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVES-TIDSHDI 181 +L GG+ V + + + ++ +G P F + + + + Sbjct: 414 GNALKHGGRPVRVRLSAGDAVAVIEVRDSGPGIPAHVLPHVFERFYKSDTARIRSEGSGL 473 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + L Sbjct: 474 GLAITAENVRIHGGTVHAANHPAGGAVFTVELP 506 >gi|163746333|ref|ZP_02153691.1| two-component sensor histidine kinase protein [Oceanibulbus indolifex HEL-45] gi|161380218|gb|EDQ04629.1| two-component sensor histidine kinase protein [Oceanibulbus indolifex HEL-45] Length = 509 Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 22/150 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA------IIRLK-FMRLAFGYT 74 I HD + + + +LELL+ + LI + +A RL F R + Sbjct: 147 IAHDFNNLLTVVIGNLELLEMSETAAKSGALISDALEAAEVGADLTSRLMVFAR----KS 202 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 +I L + ++ W + + A +LN+ + Sbjct: 203 TLNAEVIDLNAEVSKAVAMLNRTIGAHITVETAFADDLWQAKVDATQLQTA--VLNIALN 260 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A ++P GGK+T+ ++ + ++ + + G Sbjct: 261 AQDAMPSGGKITLETRNMQLDDTYVAQEIG 290 >gi|320324588|gb|EFW80665.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328960|gb|EFW84959.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890761|gb|EGH23422.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 676 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|289628474|ref|ZP_06461428.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 676 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|239833815|ref|ZP_04682143.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] gi|239821878|gb|EEQ93447.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] Length = 462 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 14/183 (7%) Query: 42 EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFI--AVDK 98 GI+ MQL S A L R G + L + +Q++E A D+ Sbjct: 282 LAGIKSTAMQL----SRLAGQLLTLSRAEPGSRRPRADRVDLAEAGQQILESLAGKAFDR 337 Query: 99 RVQVSWTG----EKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153 ++ + I + +++NL A P GG VT+ + ++ ++ Sbjct: 338 KIDLGLELKAKKPIISGDGTMLREMIVNLVDNALTYTPEGGTVTLVIDQDGHKIKLRVED 397 Query: 154 NGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 NG E + + D + V +A + + ++ Sbjct: 398 NGPGIPVSEYEHVFERFYRVPGTLADGSGLGLAIVREVADAAGGDVSLSETKGGGLTVTV 457 Query: 212 LLE 214 L Sbjct: 458 TLP 460 >gi|227822197|ref|YP_002826168.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227341197|gb|ACP25415.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 861 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56 MA+ N L I HD + + AI S + LL + L I+ + Sbjct: 460 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 514 Query: 57 SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106 + A + ++ + LAF ++ + +GD+ +++ + +V+V W Sbjct: 515 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 573 Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142 E+ LLNL + A ++P GG +T+ ++ Sbjct: 574 RTDLGQFEQV--LLNLAVNARDAMPDGGTITLRTRN 607 >gi|117926290|ref|YP_866907.1| periplasmic sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] gi|117610046|gb|ABK45501.1| periplasmic sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] Length = 629 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ILLNL A ++P GG + + F ++ +G Sbjct: 519 ILLNLMQNALHAMPHGGSLRVGTSRGNGRVAFVVEDSG 556 >gi|330869968|gb|EGH04677.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 676 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|293394380|ref|ZP_06638680.1| sensor histidine kinase [Serratia odorifera DSM 4582] gi|291423358|gb|EFE96587.1| sensor histidine kinase [Serratia odorifera DSM 4582] Length = 490 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 20/177 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIE----------DEVMQLIRLSSMSAIIRLKFMRLAF 71 I HD+ +P+ ++H LE L D + R A + RL + Sbjct: 274 ISHDLRTPLTSLHGYLETLSLKSAALTEAERLRYLDTALAQSRKVGRLAQELFELARLEY 333 Query: 72 GYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA---KILLNLF 123 G LG++ Q I A D+R+ ++ + A ++L NL Sbjct: 334 GVVKPQKEPFSLGELVQDIFQKFELAAEARDQRLLADIQPGIPLVNADLAMIERVLTNLL 393 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 A P G++T+ + + + + +G P++ + + Sbjct: 394 DNALRHTPNSGEITVRLWRQAQQVMVQVSDSGPG--IPQELRADLFERPSVLYSARR 448 >gi|289646786|ref|ZP_06478129.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 676 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|168698717|ref|ZP_02730994.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 526 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERA------KILLNLFMVAH 127 S ++ L ++ + +A R+ V + R RA ++L+NL + A Sbjct: 219 SRPEVLDLNEVVSELGGLLARLIGNRIAVRTELAPEPV-RVRADRGHLEQVLMNLAVNAR 277 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING 155 ++P GG + I+ ++ ++ G Sbjct: 278 DAMPDGGTLRIATGLAEQFAKLTVADTG 305 >gi|84686866|ref|ZP_01014750.1| multisensor hybrid histidine kinase [Maritimibacter alkaliphilus HTCC2654] gi|84665063|gb|EAQ11543.1| multisensor hybrid histidine kinase [Rhodobacterales bacterium HTCC2654] Length = 800 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 20/135 (14%) Query: 24 HDIISPIGAIHNSLELL----DEVGIED-EVMQLIRLSSMSAIIR----LKFMRLAFGYT 74 HD + + AI +LL D ED ++ I +S A L F R Sbjct: 398 HDFNNLLTAISGHCDLLLLRHDNPDDEDFPDLKQISQNSNRAAALVGQLLAFSR----KQ 453 Query: 75 GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAH 127 +I L D + + + + + + ++ R+ ++++NL + A Sbjct: 454 TLRPDVIDLADSMADLVHLLGRLVGETITLDYLHDQDIRPVRADKRQLEQVVMNLVVNAR 513 Query: 128 ASLPRGGKVTISVQD 142 ++P GG + + V + Sbjct: 514 DAMPGGGTIRLEVHN 528 >gi|115522263|ref|YP_779174.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516210|gb|ABJ04194.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 832 Score = 35.6 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 21/143 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIR----LKFMRLAF 71 I HD + + I SL+L+ + L R S+ A L F R Sbjct: 467 IAHDFNNLLTGIVGSLDLMQVRLSQGRTDNLARYIEAAMTSANRAAALTHRLLAFAR--- 523 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFM 124 V + + +ED + + D + LLNL + Sbjct: 524 -RQPLVPKPVDANQLVISLEDLLRRTIGETIDLEVVAGDRLWATLCDPNQLESALLNLAI 582 Query: 125 VAHASLPRGGKVTISVQDSKNEN 147 A ++P GG++TI+ +++ Sbjct: 583 NARDAMPGGGRLTIATSNARVGG 605 >gi|304394996|ref|ZP_07376880.1| integral membrane sensor signal transduction histidine kinase [Pantoea sp. aB] gi|304357249|gb|EFM21612.1| integral membrane sensor signal transduction histidine kinase [Pantoea sp. aB] Length = 438 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 12/169 (7%) Query: 1 MAKNICFNLSSMD--LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58 M + + L L A I HD+ +PI I E++ E + +++Q + + Sbjct: 220 MQQRMSAYLKERMQILAA-----ISHDLQTPITRIRLRSEMMSETDVRSKLLQDLEEMTR 274 Query: 59 SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116 + + R + + I+ ++ D+ ++V + +R A Sbjct: 275 LIREGVAYARTSESSDEKPCRIQPHAFIDSLVCDYQDTGQQVTLQGKLHGSFSTRPHALR 334 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 + L NL +L G + V+ + ++ G E + Sbjct: 335 RTLSNLI---DNALKFAGSAEVVVEQDAGQITIAVLDRGPGIPPEEMYA 380 >gi|260566346|ref|ZP_05836816.1| NtrB protein [Brucella suis bv. 4 str. 40] gi|260155864|gb|EEW90944.1| NtrB protein [Brucella suis bv. 4 str. 40] Length = 380 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 30/214 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 R A V+ L ++ + + A R + + R ++ LNL Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252 Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177 A ++ GG++ +S + L++ G R P +F +G+ V + Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGSGVPQDML 309 Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 H + + L+ +II DH ++ Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|153006988|ref|YP_001381313.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030561|gb|ABS28329.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1519 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 27/166 (16%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSSMSAI----I 62 L AL L + + H++ +P+G I NSL LL G ++ ++ + Sbjct: 1292 RLAALGELSAVVAHEVRNPLGVIFNSLGSLRRLLRPAGDAKLLLDIVGEEADRLNRIVGD 1351 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSR 113 L F R D + +E+V+E+ I V+ V + + Sbjct: 1352 LLDFAR-------PSDPQLRPERLERVVEEAIHTALAQNPQGVEVSRDVDPELPAVPIDA 1404 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 + ++N+ + A ++PRGG++T+ V+ ++ G Sbjct: 1405 RLVRQAVINVAVNAIQAMPRGGRLTVRVRREDGTAALDVEDTGPGI 1450 >gi|117168588|gb|ABK32253.1| Amb5 [Sorangium cellulosum] Length = 508 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 21/212 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSS----MSAIIRLKFMRLAFGYT 74 HD+ +P+ A+ S+ +LD + M L+ L ++ Sbjct: 282 HDLRNPLSALRMSVHVLDLDSLPPASSVRRTMALVGRQVDRLERMVGDLLDASQIEACKL 341 Query: 75 GSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL- 130 L D+ Q D ++ + +++S + + + +I L + +L Sbjct: 342 ELRVEERDLRDLAQEAVDLYRPVSPEHPIELSLPETPVLVPCDATRIAQVLNNLLSNALK 401 Query: 131 --PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQF 183 P GG++ ++V+ + +++ G P + + + + +I + Sbjct: 402 YSPAGGQIDVAVRAGGDGAEIAIRDRGLGI-EPAELAHLFEPFRRLKSSSGSIPGTGLGL 460 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + RLL E V L + Sbjct: 461 TVAKRIVEAHGGRLLVESRPGAGSVFRIDLPR 492 >gi|104781515|ref|YP_608013.1| sensor histidine kinase [Pseudomonas entomophila L48] gi|95110502|emb|CAK15210.1| putative sensor histidine kinase [Pseudomonas entomophila L48] Length = 428 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 27/175 (15%) Query: 5 ICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED------EVMQ- 51 + FN + A L R I HD+ +PI + +E +D+ ++ + M+ Sbjct: 209 VAFNALQARIAAYLKERMQLLAAISHDLQTPITRMKLRVEQMDDGLEKEKLSHDLDAMEH 268 Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKID 110 L+R A + + L ++ ++ D+ +V + + Sbjct: 269 LVREGVAYARS--------MDSSTEAPCRVNLDAFLDSLVFDYQDSGAKVDRQGSAQATL 320 Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +R A ++L+NL +L G + V+ + + +G E Sbjct: 321 ETRPHALRRVLVNLV---DNALKFAGAAHLEVRHEQGVTQIRVLDDGPGIPADEL 372 >gi|17549416|ref|NP_522756.1| two component transmembrane sensor kinase transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431669|emb|CAD18346.1| probable two component transmembrane sensor kinase transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 431 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTGSVDSL 80 I HD+ +P+ + E+L + I S + +F+ A G + Sbjct: 228 IAHDLKTPLSRLRLRAEMLTDPKASAG----IERDVDSMSAIVDQFLAYAQSGDGEARDV 283 Query: 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 + + +++ F K V + + +I++NL + G + + Sbjct: 284 MVDRHLRGLVQPFAEQGKHVALELRAGDRFRLKPTYLERIVVNLL---DNAFAYGAE-PV 339 Query: 139 SVQDSKNENIFSLKINGNLARFPE 162 V + +E F L + + A P+ Sbjct: 340 RVTTAADERSFMLTVEDHGAGIPQ 363 >gi|319787473|ref|YP_004146948.1| integral membrane sensor signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317465985|gb|ADV27717.1| integral membrane sensor signal transduction histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 479 Score = 35.6 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 54/171 (31%), Gaps = 33/171 (19%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H++ SP+ AI + ELL E E E R +F R G + I Sbjct: 268 HEMKSPLAAIRGAAELLQEPLPEPE--------------RQRFARSILEQQGRLTETIDK 313 Query: 84 GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS 143 +A+ + Q W RE + L VA A+ PR ++ Sbjct: 314 ---------LLALAEVEQHGW-----LQRREAVDLGALLGEVATAAEPR--LAGAGLELQ 357 Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194 L+ G+ + +VD + +Q + L A Sbjct: 358 LELPPQPLRAEGDGFLLRQALANLVDNALAFAPRGSTVQ---LSLGAEAGG 405 >gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1215 Score = 35.6 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 21/39 (53%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++ +NL A ++P GG + ++V+ + + ++ G Sbjct: 1097 QVFINLLKNAIEAMPNGGTIEVTVERDGDHVVIRVRDEG 1135 >gi|262194642|ref|YP_003265851.1| signal transduction histidine kinase with CheB and CheR activity [Haliangium ochraceum DSM 14365] gi|262077989|gb|ACY13958.1| signal transduction histidine kinase with CheB and CheR activity [Haliangium ochraceum DSM 14365] Length = 1759 Score = 35.6 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 20/168 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQ--LIRLSSMSAI---IRL 64 + +A+L H++ +P+ AI + ELL E MQ L R + A L Sbjct: 1387 EFLAMLG----HELRNPLAAIRTASELLRRKLGGNPEFTRMQEVLDRQTLHMAKLLDGLL 1442 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 R+ G L+ L I + + E ++ E + + +R ++ Sbjct: 1443 DISRIIRGKIRLESELLDLRKIVREVTSDLREGMTDRQLEIRADIPPEPLLVEADRVRLA 1502 Query: 120 L---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 NL A P GG + I++ + L++ + Sbjct: 1503 QIVNNLLSNAVKYTPDGGAIHITLSHDSGDGTVVLEVKDTGVGIEAEL 1550 >gi|331015208|gb|EGH95264.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 468 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 36/217 (16%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELL++ + + ++L+ A+ +K Sbjct: 266 LFSAISHDLRTPITRLRLRIELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123 + I + ++E + D RV + + A + + NL Sbjct: 317 --DTDIHENIEPVHLNALLECLVEPWLTADGDGRVTQQGEAQAAYPGKPLALMRCIGNLI 374 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 +L G + + V+D + + G PE+ + V + + Q Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428 Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215 Y + L +AH + + + + D + ++ L + Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465 >gi|223936504|ref|ZP_03628415.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223894668|gb|EEF61118.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 874 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 16/134 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK----FMRLAFGYT 74 I HD+ + I S+ LL ++E L+ + S+ +K F R G Sbjct: 506 IAHDLNNVFAPILMSVALLRMNMPDEESKDLLHTLQTSAQRGAELVKQVLSFARGVEGER 565 Query: 75 GSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128 V+ + + +I V+ D + + W + ++ LNL + A Sbjct: 566 IEVNPVHLMREILNVVRDTFPKSIVFNFLDKQDL-WNVTGD--PTQLHQVFLNLCVNARD 622 Query: 129 SLPRGGKVTISVQD 142 ++P GG +T+ +++ Sbjct: 623 AMPNGGDLTLKLEN 636 >gi|330985287|gb|EGH83390.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 676 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|313202284|ref|YP_004040942.1| histidine kinase [Methylovorus sp. MP688] gi|312441600|gb|ADQ85706.1| histidine kinase [Methylovorus sp. MP688] Length = 539 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++LLNL + A LP GG++ + + ++ NG ++ Sbjct: 432 PEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGIPEEQR 483 >gi|302187715|ref|ZP_07264388.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae 642] Length = 394 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ Q+++ S A L F R G+ Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKARQIVQHILTSGHRASQLVDDVLDFARGRMGH--- 239 Query: 77 VDSLIGLGDIE---QVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125 + + + + +E I+ +RV E+I ER A++L NL Sbjct: 240 -GIPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 296 Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179 ++ G + + V + +F+L + PE + I Sbjct: 297 -SNAISHGDAESPVEVTAGVHGEVFALSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y +A + L + V + + Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390 >gi|257487867|ref|ZP_05641908.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008574|gb|EGH88630.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 676 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|322419866|ref|YP_004199089.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126253|gb|ADW13813.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 663 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 12/149 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMR--LAFG-YTGSVDS 79 HD + + I +L E+ +L+ +++A + R LAF Sbjct: 308 HDFNNVLTVIAGYANILKMDIPEESAQHELVEQIAVAAERAAQLTRGLLAFSRKQAMAPQ 367 Query: 80 LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLPR 132 LG++ +E F+ + +Q+ L + ++L+NL A ++P Sbjct: 368 RTDLGEVVHRVEQFLTRVIGEDIQLKTELLPEPLPVLVDFGQIEQVLINLAANARDAMPD 427 Query: 133 GGKVTISV-QDSKNENIFSLKINGNLARF 160 GG TI+ +G A Sbjct: 428 GGVFTIATGLYDPEGAGHHASASGRRAVI 456 >gi|254000326|ref|YP_003052389.1| histidine kinase [Methylovorus sp. SIP3-4] gi|253987005|gb|ACT51862.1| histidine kinase [Methylovorus sp. SIP3-4] Length = 559 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + ++LLNL + A LP GG++ + + ++ NG ++ Sbjct: 452 PEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGIPEEQR 503 >gi|242279338|ref|YP_002991467.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242122232|gb|ACS79928.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 16/144 (11%) Query: 85 DIEQVIEDFIA------VDKRVQVSWTGEKIDLSRER-----AKILLNLFMVAHASLPRG 133 DI ++++ +A K+++V LS ++ LNL A ++ Sbjct: 156 DINKLLKGMLALVDEEVGGKKIKVVRDIPSGALSVNTDPPLLRQVFLNLLKNAIQAVGHR 215 Query: 134 GKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 G++ IS + + + + NG + P FT + I + + Sbjct: 216 GEIVISSRREGGKVVVRVADNGVGIAEDKLPHIFTPFFTTKSPE--EGTGIGLAVSLRII 273 Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214 ++ + E V S + Sbjct: 274 NQLGGTIDVESSVGKGTVFSVAIP 297 >gi|148559647|ref|YP_001259039.1| nitrogen regulation protein NtrB [Brucella ovis ATCC 25840] gi|148370904|gb|ABQ60883.1| nitrogen regulation protein NtrB [Brucella ovis ATCC 25840] Length = 380 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + + A R + + R ++ L Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDG 170 +I+LNL + P GG++++++ +++ F++ G AR + F QI Sbjct: 534 QIMLNLLSNSAKFTPAGGRISVALTETEETICFAVADTGRGIPADQIARLGQPFEQIAT- 592 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + V LA + + + ++ L K Sbjct: 593 DAALSKEGTGLGLALVRSLAELHGGSMAIDSELGVGTTVTVTLPK 637 >gi|86360302|ref|YP_472190.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86284404|gb|ABC93463.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 645 Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 17/190 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 I HD + + A+ SLE+L + +D + L+ + A L LAF + + Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346 Query: 79 SLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128 L+ D+ ++ + + R I + ++ +LNL + A Sbjct: 347 LLMEPIDVSGLVRGMMDILSRSLGPLTTIETSFPVRLPTILTDPNQLEMAILNLVVNARD 406 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 ++P GG++ + + G R +G T++ F+ Sbjct: 407 AMPSGGRIVLRASEESIAAGKGPLSAGRYVRI--AVIDEGEGMDTKTLEQAVTPFFTTKG 464 Query: 189 LAHENKIRLL 198 + + L Sbjct: 465 VGKGTGLGLS 474 >gi|298487171|ref|ZP_07005220.1| Sensory box sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158195|gb|EFH99266.1| Sensory box sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 676 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76 I HD + + I SLEL+ + L I L SA L LAF S Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGSIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372 Query: 77 VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 +DS + + + +++ + + WT E + LLNL + A Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182 ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487 Query: 183 FYYV 186 ++ Sbjct: 488 PFFT 491 >gi|302526265|ref|ZP_07278607.1| hypothetical protein SSMG_02647 [Streptomyces sp. AA4] gi|302435160|gb|EFL06976.1| hypothetical protein SSMG_02647 [Streptomyces sp. AA4] Length = 469 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 68/208 (32%), Gaps = 17/208 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFG 72 + H++ +P+ A+ ++LD E ++L+ + + ++ R G Sbjct: 261 VSHELRTPLAAMTAVTDMLDAEAKRLPDPAGEAVRLVSQETHNLTRLVNDLIEVTRFDSG 320 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132 + + + + + + R I+ NL +L Sbjct: 321 TASLEVDDVDVAEAVRATLRVRGFEVETDLPDGIRARIDPRRLDVIVANLV---GNALRH 377 Query: 133 GGK-VTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVE-STIDSHDIQFYYVI 187 G + VT+ ++ + +++ +G P F++ + S + + Sbjct: 378 GAEPVTVRLRGDQAGITLAVEDSGPGLDEEVLPHVFSRFYKADTARSRSEGSGLGLAIAW 437 Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215 A ++ L+ + V + L + Sbjct: 438 ENARLHRGELVAGNRPEGGAVFTLWLPR 465 >gi|219848910|ref|YP_002463343.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543169|gb|ACL24907.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1016 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 29/151 (19%) Query: 13 DLVAL--LCSRICHD----IISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRL 64 L AL L S + HD + S +G + L + +++ ++L + + I RL Sbjct: 649 RLRALGELSSGVAHDFNNLLASILGHVQLLLNEYHDPRLQEGLRAIELAAIDGAATIKRL 708 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWTGEKIDL- 111 + S + G D+ QV+E+ +A+ + ++V E + + Sbjct: 709 QGF-----AQTSQSTPQGAVDLNQVVEESLALTRPRWRDEAQSRGIVIEVRTDLEPLPII 763 Query: 112 --SRERAK-ILLNLFMVAHASLPRGGKVTIS 139 + +++NL + A +LP GG +TI Sbjct: 764 TGDAPALRELIINLVLNAIDALPNGGTITIR 794 >gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1131 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 12/170 (7%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK 65 L S L ++ + + I H+I +P+ AI N+L L L + + + + ++ Sbjct: 904 LRSEKLASVGRMAATIAHEINNPLEAITNTLFLALHAQDLPESAREYLEMADGELRRVAH 963 Query: 66 FMRLAFGY--TGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGE--KIDLSRERA 116 R A G+ + I L + D + R V+ W G+ ++ E Sbjct: 964 ITRQALGFYRESNAPRQIALNAVMDSTLDLLKNRIRTKNVTVEKQWDGDVHAEAVAGEMR 1023 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++ NL + ++ GG + + + +N + + I + F + Sbjct: 1024 QVFSNLLQNSLDAVDEGGAIKVRISTIRNGSAVRVTIADSGKGIEANFRE 1073 >gi|148256630|ref|YP_001241215.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146408803|gb|ABQ37309.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 936 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 13/131 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSAIIRLKFMRLAFGYTG-SVD 78 HD + + I S+ +L E + + LI S+ RL LAF Sbjct: 577 HDFNNILTVITGSIGILAESVADRPELASLAKLIDDSADR-GARLTQQLLAFARKQPLQP 635 Query: 79 SLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131 + I + + D + +R+ + + A ++NL + A ++P Sbjct: 636 ADIDVNALLVETADLLRPTLGEQIEIERILADDPCTALADPDQLATAIVNLALNARDAMP 695 Query: 132 RGGKVTISVQD 142 +GGK+T+ + Sbjct: 696 QGGKLTLETAN 706 >gi|299133243|ref|ZP_07026438.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298593380|gb|EFI53580.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 441 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYTGS 76 H++ +PI A+ E LD + ++ + AI L R G S Sbjct: 223 HELRTPITALSIQAENLDATALPEDARSRVEALKSGAIRTKHLLEQLLAMARQENGA--S 280 Query: 77 VDSLIGLGD-IEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKILLNLFMVAHASL-- 130 ++ I +G+ + + + I R ++ GE I + E+ I + L + ++ Sbjct: 281 LNQKIEIGEIAKTAVINLIESSNRKEIDLGLEQGEPIQVCAEKITIEVLLRNIIDNAIKY 340 Query: 131 -PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 P+GGK+ I ++ + + S++ G E Sbjct: 341 TPKGGKIDIRLRRKNDLAVISVEDTGPGIVDDEL 374 >gi|153003758|ref|YP_001378083.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027331|gb|ABS25099.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 458 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 21/219 (9%) Query: 11 SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRL-- 64 + +L AL + I H++ +P+ ++ L L G+ + E +Q++R L Sbjct: 234 AEELTAL-SAEIAHELKNPLASVK-GLAGLLAPGLPEGKAVERLQVLRREVDRMQAILDE 291 Query: 65 --KFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRER 115 F R LA G L GL + + +A ++ V + E + R+ Sbjct: 292 FLNFSRPLVPLALGDA----ELGGLCAEVAALHEGMARERDVAIVVRAEGVSARCDPRKV 347 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 +IL+NL A + P +V + ++ P + + Sbjct: 348 KQILINLVQNALDASPARAQVEVEASLDPGGGARVRVLDRGRGVDPSLADALFSPGATTK 407 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA ++ L+ +L Sbjct: 408 PRGSGLGLTIARALARQHGGELVLAPRPGGGTAAELVLP 446 >gi|149915166|ref|ZP_01903694.1| PAS/PAC sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b] gi|149810887|gb|EDM70726.1| PAS/PAC sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b] Length = 669 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 20/185 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77 L S I HD + + I ++LEL + E ++I + +A + F R T + Sbjct: 291 LASGIAHDSNNLLTVILSNLELALARTDDPEARRMIGTAVNAAEVNAGFNRRLLSLTCTR 350 Query: 78 DSLIGL---GDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKI--------LLNLFM 124 + G + + A+ R+ ++ E + LLNL + Sbjct: 351 GDTAAVLLIGAHLDATQPLLSHAIGDRISLTIAPEDGLWP---VRADPGDLDSALLNLAL 407 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDI 181 A ++ GG ++++ ++ + + ++ G AR + + + + + + Sbjct: 408 NARDAMQDGGALSVTARNVALDARHAARM-GPQAREGDFVCIKMRDSGTGMSDEVVAQAM 466 Query: 182 QFYYV 186 + ++ Sbjct: 467 EPFFT 471 >gi|126732983|ref|ZP_01748743.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Sagittula stellata E-37] gi|126706555|gb|EBA05632.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Sagittula stellata E-37] Length = 640 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 26/170 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII----RLKFMR 68 + + + H+I +P+ I +L++L D + LI L+F R Sbjct: 421 ITAGVAHEINNPVAVIQGNLDVLRETLGDAAQPVQTEIDLIDGQVGRINAIVGKLLQFAR 480 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSR------ERAKI 118 D+ V+ D + + + R + E + R E ++ Sbjct: 481 -----PDDFSGTERAVDLAPVVRDCLVLVEHVLTRADIRVETELDEAPRVAIGGGEMQQV 535 Query: 119 LLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQ 166 ++NL + A ++ G + T++ + +L++ P+K Sbjct: 536 VINLVVNAVHAMEHSGTIFLTLNAEPRDGRPGAALRVRDTGPGVPDKLLD 585 >gi|73541976|ref|YP_296496.1| osmosensitive K+ channel signal transduction histidine kinase [Ralstonia eutropha JMP134] gi|72119389|gb|AAZ61652.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor:UspA [Ralstonia eutropha JMP134] Length = 951 Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 18/222 (8%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55 +A+ ++ S L + L + + HD+ +P+ ++ E L + + +R Sbjct: 697 VAQRALLSMESERLRSSLLAAVSHDLRTPLTSLIGMAETLQRGDPPLAPRVADTVSAMRD 756 Query: 56 SSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108 + L RL ++ + RV V+ + Sbjct: 757 QARRMSTMVVNLLDMARLQGRDVRMQKEWQSFEELVGAALGALRDALVGHRVAVADLHKM 816 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162 + + ++L NL A P G ++ I + +E ++ +G + Sbjct: 817 PLVECDAVLMDRVLCNLLENAAKYTPAGTEIRIRAEVVDDEVRLVVEDDGPGVPPGSERQ 876 Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 F + G ES + + + R+ E + D Sbjct: 877 IFEKFTRGERESVTTGVGLGLAVCDAIVQAHGGRIWVEPVRD 918 >gi|307543661|ref|YP_003896140.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307215685|emb|CBV40955.1| integral membrane sensor signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 697 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 23/181 (12%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVM----QLIRLSSMSAII- 62 S L A+ + + + H+I +P+ I +L++ +G + + LI Sbjct: 471 SEKLAAVGEITAGVAHEINNPVAVIQGNLDVARQSLGSRVDEVATEFDLIDDQVHRISAI 530 Query: 63 ---RLKFMRLAFG-YTGSVDSLIGLG--DIEQVIEDFIAVDKRVQV---SWTGEKIDLSR 113 L+F R G ++GS + L+ D V+ ++ V V + I + R Sbjct: 531 ISKLLQFARP--GEFSGSANRLVPAEVIDDCLVLTRHLSSKAGVTVERDDRSMASILVER 588 Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN---LARFPEKFTQIVD 169 + +++NL + A ++P GG +T+ +D E + + I PE +I D Sbjct: 589 TELQQVIINLVVNAIHAMPEGGTLTLETEDRDVEGVPGVAIIVTDTGRGMMPEVLKRIFD 648 Query: 170 G 170 Sbjct: 649 P 649 >gi|306843983|ref|ZP_07476578.1| Nitrogen regulation protein ntrB [Brucella sp. BO1] gi|306275738|gb|EFM57462.1| Nitrogen regulation protein ntrB [Brucella sp. BO1] Length = 383 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 30/214 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 R A V+ L ++ + + A R + + R ++ LNL Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252 Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177 A ++ GG++ +S + L++ G R P +F +G V + Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQDML 309 Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 H + + L+ +II DH ++ Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|302382232|ref|YP_003818055.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192860|gb|ADL00432.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 355 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 15/166 (9%) Query: 18 LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSMS----AIIRLKFMRL 69 L S + H++ P+ AI N L+ L+ I+ + S+ A ++ +R Sbjct: 137 LASMVAHELNQPLSAILNFLDAATTLISRPEIDRAKITKYVESAAGQAERASDVIRRLRT 196 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-SRERA-KILLNL 122 S + +I I + ++ R + V + L R + +++LNL Sbjct: 197 LMSRDTGFHSQANMAEIVDEILPILRINAREVDAILTVRIPPDGCALCDRVQVQQVVLNL 256 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 A + G + + + + + + + + N PE + Sbjct: 257 VRNALDAPSDGQRRRVLISGDQTDQHYRVTVEDNGPGVPEAVAGGL 302 >gi|256061201|ref|ZP_05451353.1| Nitrogen regulation protein ntrB [Brucella neotomae 5K33] gi|261325209|ref|ZP_05964406.1| signal transduction histidine kinase [Brucella neotomae 5K33] gi|261301189|gb|EEY04686.1| signal transduction histidine kinase [Brucella neotomae 5K33] Length = 380 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 30/214 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 R A V+ L ++ + + A R + + R ++ LNL Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252 Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177 A ++ GG++ +S + L++ G R P +F +G V + Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQDML 309 Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 H + + L+ +II DH ++ Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|213967057|ref|ZP_03395207.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385242|ref|ZP_07233660.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063297|ref|ZP_07254838.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130183|ref|ZP_07256173.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928379|gb|EEB61924.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 676 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75 I HD + + I SLEL+ L S+ A + LAF Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371 Query: 76 SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 S+DS + + + +++ + + WT E + LLNL + Sbjct: 372 SLDSKPVEINHLVDAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181 A ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486 Query: 182 QFYYV 186 ++ Sbjct: 487 DPFFT 491 >gi|153009401|ref|YP_001370616.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ochrobactrum anthropi ATCC 49188] gi|151561289|gb|ABS14787.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ochrobactrum anthropi ATCC 49188] Length = 374 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITDETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + ++ A R + + R +I L Sbjct: 194 ---SDERPIERSAVNIHAVLDHVKAIAKNGFARKIRFVEDYDPSLPPVFANRDQLVQIFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 251 NLLKNASEAIGDREGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|119896364|ref|YP_931577.1| putative sensor histidine kinase [Azoarcus sp. BH72] gi|119668777|emb|CAL92690.1| putative sensor histidine kinase [Azoarcus sp. BH72] Length = 728 Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 24/159 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS----AIIRLKFMR 68 L + + H+I +P+ I +LEL+ + + + I L+F R Sbjct: 461 LTAGVAHEINNPVAVIQGNLELVRELLGGDSAPVADELAQIDAQVGRIHGIVTKLLQFAR 520 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGE---KIDLSRERAK-I 118 G D ++ D + + R++V+ + ++++R + + Sbjct: 521 -----PGDFAGYTEQVDASGLVGDCLLLTRHNLSRGRIEVTTALDARGTVEINRGELQQV 575 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 L+NL + A ++P GG++ +S D +G Sbjct: 576 LINLIVNAMQAMPDGGRLRLSTADIDEGGEDDDAGHGAG 614 >gi|86750880|ref|YP_487376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573908|gb|ABD08465.1| multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA [Rhodopseudomonas palustris HaA2] Length = 874 Score = 35.3 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68 MD + L I HD + + AI + + LL+ D Q I +A +R Sbjct: 491 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 550 Query: 69 LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118 LAF ++ LG+ I+ + ++V + W + E+ Sbjct: 551 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKVSLEMQHGRDLWRVKADVSQFEQV-- 608 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++NL + A ++P GGK+ I + L G Sbjct: 609 IVNLAVNARDAMPDGGKLAIRTSNVPAAEAAQLAHKG 645 >gi|260428060|ref|ZP_05782039.1| sensory box sensor histidine kianse/response regulator [Citreicella sp. SE45] gi|260422552|gb|EEX15803.1| sensory box sensor histidine kianse/response regulator [Citreicella sp. SE45] Length = 755 Score = 35.3 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 19/133 (14%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL + G D + I ++ A L F R Sbjct: 394 HDFNNLLTAISGHCDLLLLRHDQGDPDYADLVQINQNANRAAALVGQLLAFSR----KQT 449 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 ++ L D + + ++VQ+S + + + + R+ ++++NL + A Sbjct: 450 LRPEVLDLRDTLSDLTHLLNRLVGEKVQLSLSHDPVLPTIRGDRRQLEQVMMNLVVNARD 509 Query: 129 SLPRGGKVTISVQ 141 ++P GG++ I + Sbjct: 510 AMPDGGEIVIETE 522 >gi|209516225|ref|ZP_03265083.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia sp. H160] gi|209503336|gb|EEA03334.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia sp. H160] Length = 942 Score = 35.3 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 31/237 (13%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQL--- 52 +A++ ++ S L L S I HD+ +P+ AI LL + G + +L Sbjct: 661 IAQDALISMESERLRNSLLSAISHDLRTPLTAIVGFASLLAQPGHGEKAGQPAANELGEE 720 Query: 53 IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTG 106 I +M L +RL G L ++ R + Sbjct: 721 IYDEAMRMTAIVTNLLDMVRLQEGSMRLNRQWSSLEEVIGAALAASRRLLSGRTLYTHVP 780 Query: 107 EKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN-------- 154 + L + A ++L NL A P G VTI+ + +++N Sbjct: 781 TDLPLVQLDAVLMERLLANLLDNAAKYTPAGSPVTINAAAVEENGRRYVRVNVEDNGPGL 840 Query: 155 --GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209 G +R +KFT+ G ES + + + + ++ N L Sbjct: 841 SPGMESRVFDKFTR---GEKESALPGIGLGLAICRAIVEAHGGKISAANRTGPNGTL 894 >gi|37520141|ref|NP_923518.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35211134|dbj|BAC88513.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 370 Score = 35.3 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 3/102 (2%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173 +++ NL A PRGG+VT+ + + +E ++ G + F + Sbjct: 254 RVVANLVGNAINHTPRGGRVTVRLLRAPDEWRLLVEDTGTGIPPTDIRRVFERFYQAENT 313 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + Y + + R+ + L Sbjct: 314 RHVPGTGLGLYLSRQIVEAHGGRIWAANRPGGGCLFGVSLPD 355 >gi|254487190|ref|ZP_05100395.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214044059|gb|EEB84697.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 742 Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 27/196 (13%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + + AI +LL D+ + + I ++ A L F R Sbjct: 381 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 436 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 + + D + + ++V ++ + + I R+ ++L+NL + A Sbjct: 437 LRPETLNMRDTLADLTHLLNRLVGEKVTLTLSHDPILNPIRADKRQLEQVLMNLVVNARD 496 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----F 183 ++P GG++ I + + + P K+ + + I + +Q F Sbjct: 497 AMPSGGEIRICTETVDLTEGLT---RDRVTVPPGKYVTVQVADEGHGISADKLQKVFEPF 553 Query: 184 YYVILLAHENKIRLLP 199 + + L Sbjct: 554 FTTKRTGEGTGLGLST 569 >gi|17987148|ref|NP_539782.1| nitrogen regulation protein NTRB [Brucella melitensis bv. 1 str. 16M] gi|161619070|ref|YP_001592957.1| nitrogen regulation protein ntrB [Brucella canis ATCC 23365] gi|225627590|ref|ZP_03785627.1| Nitrogen regulation protein ntrB [Brucella ceti str. Cudo] gi|225852619|ref|YP_002732852.1| nitrogen regulation protein ntrB [Brucella melitensis ATCC 23457] gi|254701861|ref|ZP_05163689.1| Nitrogen regulation protein ntrB [Brucella suis bv. 5 str. 513] gi|254706697|ref|ZP_05168525.1| Nitrogen regulation protein ntrB [Brucella pinnipedialis M163/99/10] gi|254714193|ref|ZP_05176004.1| Nitrogen regulation protein ntrB [Brucella ceti M644/93/1] gi|254717628|ref|ZP_05179439.1| Nitrogen regulation protein ntrB [Brucella ceti M13/05/1] gi|256044775|ref|ZP_05447679.1| Nitrogen regulation protein ntrB [Brucella melitensis bv. 1 str. Rev.1] gi|256113674|ref|ZP_05454485.1| Nitrogen regulation protein ntrB [Brucella melitensis bv. 3 str. Ether] gi|256159845|ref|ZP_05457578.1| Nitrogen regulation protein ntrB [Brucella ceti M490/95/1] gi|256255091|ref|ZP_05460627.1| Nitrogen regulation protein ntrB [Brucella ceti B1/94] gi|256263889|ref|ZP_05466421.1| NtrB [Brucella melitensis bv. 2 str. 63/9] gi|260168822|ref|ZP_05755633.1| Nitrogen regulation protein ntrB [Brucella sp. F5/99] gi|260565622|ref|ZP_05836106.1| NtrB family protein [Brucella melitensis bv. 1 str. 16M] gi|261219465|ref|ZP_05933746.1| signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261222285|ref|ZP_05936566.1| signal transduction histidine kinase [Brucella ceti B1/94] gi|261314158|ref|ZP_05953355.1| signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261321961|ref|ZP_05961158.1| signal transduction histidine kinase [Brucella ceti M644/93/1] gi|261752424|ref|ZP_05996133.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261758309|ref|ZP_06002018.1| NtrB [Brucella sp. F5/99] gi|265991199|ref|ZP_06103756.1| signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995035|ref|ZP_06107592.1| signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|265998249|ref|ZP_06110806.1| signal transduction histidine kinase [Brucella ceti M490/95/1] gi|17982813|gb|AAL52046.1| nitrogen regulation protein ntrb [Brucella melitensis bv. 1 str. 16M] gi|161335881|gb|ABX62186.1| Nitrogen regulation protein ntrB [Brucella canis ATCC 23365] gi|225617595|gb|EEH14640.1| Nitrogen regulation protein ntrB [Brucella ceti str. Cudo] gi|225640984|gb|ACO00898.1| Nitrogen regulation protein ntrB [Brucella melitensis ATCC 23457] gi|260151690|gb|EEW86784.1| NtrB family protein [Brucella melitensis bv. 1 str. 16M] gi|260920869|gb|EEX87522.1| signal transduction histidine kinase [Brucella ceti B1/94] gi|260924554|gb|EEX91122.1| signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261294651|gb|EEX98147.1| signal transduction histidine kinase [Brucella ceti M644/93/1] gi|261303184|gb|EEY06681.1| signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261738293|gb|EEY26289.1| NtrB [Brucella sp. F5/99] gi|261742177|gb|EEY30103.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|262552717|gb|EEZ08707.1| signal transduction histidine kinase [Brucella ceti M490/95/1] gi|262766148|gb|EEZ11937.1| signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001983|gb|EEZ14558.1| signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263094020|gb|EEZ17954.1| NtrB [Brucella melitensis bv. 2 str. 63/9] gi|326409137|gb|ADZ66202.1| nitrogen regulation protein ntrB [Brucella melitensis M28] gi|326538845|gb|ADZ87060.1| nitrogen regulation protein ntrB [Brucella melitensis M5-90] Length = 380 Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 30/214 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122 R A V+ L ++ + + A R + + R ++ LNL Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252 Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177 A ++ GG++ +S + L++ G R P +F +G V + Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQDML 309 Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 H + + L+ +II DH ++ Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|85703883|ref|ZP_01034986.1| sensor histidine kinase [Roseovarius sp. 217] gi|85671203|gb|EAQ26061.1| sensor histidine kinase [Roseovarius sp. 217] Length = 476 Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 22/210 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73 L S + H+I +P+G + N+ + + + ++R S+ L+ R+ Sbjct: 263 LSSSLAHEINNPLGGLLNATDTIRSYPDRPD---VVRQSADLLDRGLRHLRDVTRVTLDQ 319 Query: 74 TGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNL 122 GL D++ +I+ +A R+ + W + + +I LNL Sbjct: 320 NRIDPESRGLSADDFEDLKLLIQPEVARQ-RLDLDWCVDLAAPTVCSTPAGPVRQIALNL 378 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182 + A A+ + G+V + V + + G + DG + + Sbjct: 379 LLNACAASGQSGRVGLHVSLQADALTLQVTNTGPDMPQAALDRLLADGPLS---PGGGVG 435 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 V LA + DD ++ +L Sbjct: 436 LRLVRELARGLGGCVGHARPDDVTLITVSL 465 >gi|194367304|ref|YP_002029914.1| histidine kinase internal region [Stenotrophomonas maltophilia R551-3] gi|194350108|gb|ACF53231.1| histidine kinase internal region [Stenotrophomonas maltophilia R551-3] Length = 338 Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 66 FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKI---DLSRERAKILL 120 R A G +L ++ + + + + + +R+QV W ++ DL +++L Sbjct: 188 LFRAALGAGEGDSTLRDECELAERYLSIESLRLGERLQVRWQRDEPLPWDLPLP--RLVL 245 Query: 121 -----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175 N + + LP GG + + + NE ++ + P G+ + + Sbjct: 246 QPLVENAVLHGISRLPEGGTIELQLVREGNELQIRVRNPAPDPQAPGLALARGAGHAQHS 305 Query: 176 I 176 I Sbjct: 306 I 306 >gi|28869904|ref|NP_792523.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853149|gb|AAO56218.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 676 Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75 I HD + + I SLEL+ L S+ A + LAF Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371 Query: 76 SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 S+DS + + + +++ + + WT E + LLNL + Sbjct: 372 SLDSKPVEINHLVDAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181 A ++P GG + + + + + F+ N + P + + + + T+ S Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486 Query: 182 QFYYV 186 ++ Sbjct: 487 DPFFT 491 >gi|309781200|ref|ZP_07675937.1| CHASE domain/sensory box histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308920021|gb|EFP65681.1| CHASE domain/sensory box histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 777 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----L 69 I HD+ SP AI +EL LD + + QL + A + R L Sbjct: 560 ISHDMRSPQSAILALIELQRDASRALDREVLLSRIEQLSSRTLELADAFIDLARAESQTL 619 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V ++ D + + V+ RV R + L+NL A Sbjct: 620 KLVDVDLVGLVLDAADEVWPLANRHQVEVRVVADIEAAVRGEPRLLVRALVNLLNNAIKF 679 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 G VT+SV+ + ++ G + R + F ++ +G + + Sbjct: 680 SAAGSMVTVSVEQDEAMFSVAVADQGAGIALADQPRLFQPFHRLHEGA-ANAPAGSGLGL 738 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + + L + Sbjct: 739 VFVKTVVDRHGGRIAVQSTPGLGSTFTLWLPR 770 >gi|241662617|ref|YP_002980977.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia pickettii 12D] gi|240864644|gb|ACS62305.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia pickettii 12D] Length = 777 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----L 69 I HD+ SP AI +EL LD + + QL + A + R L Sbjct: 560 ISHDMRSPQSAILALIELQRDASRALDREVLLSRIEQLSSRTLELADAFIDLARAESQTL 619 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V ++ D + + V+ RV R + L+NL A Sbjct: 620 KLVDVDLVGLVLDAADEVWPLANRHQVEVRVVADIEAAVRGEPRLLVRALVNLLNNAIKF 679 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 G VT+SV+ + ++ G + R + F ++ +G + + Sbjct: 680 SAAGSMVTVSVEQDEAMFSVAVADQGAGIALADQPRLFQPFHRLHEGA-ANAPAGSGLGL 738 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + + L + Sbjct: 739 VFVKTVVDRHGGRIAVQSTPGLGSTFTLWLPR 770 >gi|229590094|ref|YP_002872213.1| putative sensor histidine kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] gi|229361960|emb|CAY48860.1| putative sensor histidine kinase/response regulator fusion protein [Pseudomonas fluorescens SBW25] Length = 831 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 15/147 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75 I HD + + I SL+L+ + R S+ A + LAF Sbjct: 465 IAHDFNNMLTGIIGSLDLMQRYIAAGRSDDIGRFTDAAVSSAHRAAALTHRL-LAFSRRQ 523 Query: 76 SVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKI---LLNLFMVAH 127 S+D + + +ED K ++ + ++ + +++ LLNL + A Sbjct: 524 SLDLQPLNPNQLVASLEDLFRRTKGAHITLNVQLGHDIWPVNTDASQLENALLNLVINAR 583 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKIN 154 ++P GG++ I +S + + Sbjct: 584 DAMPDGGEILIETANSYLDGTDITTLE 610 >gi|172063287|ref|YP_001810938.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171995804|gb|ACB66722.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 663 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 73/218 (33%), Gaps = 21/218 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI----IRLKFMRLA 70 L + + H++ +P+ I+ +E+L + G + + I S+ S L LA Sbjct: 289 LLATVSHELRTPLNVIYGWVEVLRSGEGQGFAHQAIDAIDRSARSLSRMVGDLLDASSLA 348 Query: 71 FGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 G + + L + ++ E A + ++ + ++ L + Sbjct: 349 TGRVRLERTPVDLVRIVQESVREIGETAEANGLDLSTECAMPSCVIAADAERLRQLLSNL 408 Query: 126 AHASL---PRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSH 179 ++ PRGG++ +S+ + S+ G R P F + Sbjct: 409 LSNAIKFTPRGGRIKVSLNPAGARVRLSVADTGQGISAERLPHLFDTFSRPEGAPALPKR 468 Query: 180 DIQFYYVIL--LAHENKIRLLPE-IIDDHNVVLSALLE 214 + I+ +A + + ++ +L Sbjct: 469 GLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 506 >gi|149200017|ref|ZP_01877043.1| Signal transduction histidine kinase [Lentisphaera araneosa HTCC2155] gi|149136890|gb|EDM25317.1| Signal transduction histidine kinase [Lentisphaera araneosa HTCC2155] Length = 467 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 43/223 (19%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV------------------MQLIRLSSMSAIIRLK 65 H++ SP+ AI + EL+ G+ ++ + L+ A Sbjct: 250 HELRSPLAAISSFSELM-LEGMHGDITVKQEASLQRIMANAQNLLDLVNDLVDQAKA--- 305 Query: 66 FMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL--SRERAK 117 GS++ + D++ E+ + A ++V + + DL + Sbjct: 306 -------EAGSLELKLEAKDLKAFCEEVLESVKIEAEKSGLKVIYHASEEDLVCDIHEVR 358 Query: 118 I---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171 + ++NL A +GGK+ + VQ ++ +G + F + G+ Sbjct: 359 LRQVIVNLISNAIKFSKQGGKLELRVQRKGGLAFIEVEDDGIGISPADQRNIFMEFHQGD 418 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + +A + + V L Sbjct: 419 TYQKEKGAGLGLHLSRQIARLHGGDITVVSEKGKGSVFRVQLP 461 >gi|186473562|ref|YP_001860904.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195894|gb|ACC73858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 781 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 23/147 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRLAFGYTG 75 HD + + + +LELLD D + + S A L F R Sbjct: 290 HDFNNVLQILRGNLELLDSRHHRDPWSRDRIYKAIDAVDRGSKLASHLLAFGR----QQP 345 Query: 76 SVDSLIGLGDIEQVIEDFI--AVDKRVQVS-------WTGEKIDLSRERAKILLNLFMVA 126 I L + ++D + A+ + V+V W E +LNL + A Sbjct: 346 LQPVAINLAAALRGMDDLLRRALGETVRVETVVGGGLWNTLVDIHQLENV--ILNLAINA 403 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKI 153 ++P GGK+T+ + ++ ++ + + Sbjct: 404 RDAMPHGGKLTMELSNAMLDDEYVATV 430 >gi|78187032|ref|YP_375075.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166934|gb|ABB24032.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 817 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 22/179 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS-LELLDEVGIEDEV----MQLIRL 55 M + + + ++LV L I HD + + AI +E+L + E ++ I Sbjct: 443 MQEQLNQS-QKLELVGQLAGGIAHDYNNML-AITLGHVEMLLDQVPESHPFFNGLKAILN 500 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKI 109 S+ ++ L F R +++ L + + + A+ + + W Sbjct: 501 STERSVAITSQLLAFAR----KQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPA 556 Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +ILL L + A ++ G +TI+ +S L ++ E+ Sbjct: 557 INSISIDPGQFDQILLILCLNARDAIKENGTITINAGESTTPGYAVLTVSDTGIGINER 615 >gi|238786193|ref|ZP_04630143.1| hypothetical protein yberc0001_38490 [Yersinia bercovieri ATCC 43970] gi|238712910|gb|EEQ04972.1| hypothetical protein yberc0001_38490 [Yersinia bercovieri ATCC 43970] Length = 475 Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 15/149 (10%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83 H++ SP+ AI + ELL E + + L+ R++ + ++S + L Sbjct: 265 HELKSPLAAITGAAELLRESPPPAMAQRFL-LNIEQQSARIQLLVDKMLIQARLESRVDL 323 Query: 84 G----DIEQVIEDFI--------AVDKRVQVSWTGEKIDLSRE--RAKILLNLFMVAHAS 129 ++ +++ + R+++ I + ++ L NL A Sbjct: 324 QLSPLEVSHILQQTFSGKEAQAVSRGIRLRLIGADSAILMGDALLLSQALSNLIDNALDF 383 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158 P GG VT+ + E + +++ +G+ Sbjct: 384 TPVGGDVTLCGERQTTEYLITVEDSGSGI 412 >gi|328543926|ref|YP_004304035.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326413670|gb|ADZ70733.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 379 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 38/220 (17%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM---SAIIRLKFMR 68 L A+L H+I +P+ I + +LL++ E++ +LI + + R++ Sbjct: 146 LAAMLA----HEIKNPLSGIRGAAQLLEQSASEEDRALTRLIMDEADRIVKLVDRMEVF- 200 Query: 69 LAFGYTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119 S + I L ++++ + A KR+ + + R +++ Sbjct: 201 -------SDERPIEREPVNIHVVLDHVKRLADSGFARGKRIVEDYDPSLPPVHANRDQLI 253 Query: 120 ---LNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGN 171 LNL A ++ G G++ I+ S+ P +F + Sbjct: 254 QVFLNLVKNASEAI--GDDPDGEIRITTAFRPG-VRLSVPGTTEKVSLPLEFCVRDNGPG 310 Query: 172 VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 V + H + + + L+ +II DH V+ Sbjct: 311 VPEDLLPHLFEPFITTKPNGSGLGLALVAKIIGDHGGVIE 350 >gi|289624477|ref|ZP_06457431.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487714|ref|ZP_07005755.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157806|gb|EFH98885.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330870201|gb|EGH04910.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 697 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLNL + A ++PRGG++TI + + G+ + Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 Y+ L + + PE+I+ Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502 >gi|229592506|ref|YP_002874625.1| putative phytochrome/sensor histidine kinase [Pseudomonas fluorescens SBW25] gi|229364372|emb|CAY52146.1| putative phytochrome/sensor histidine kinase [Pseudomonas fluorescens SBW25] Length = 747 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 94 IAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 +A++K + +S+ E ++L NL A PR G + IS + E +F Sbjct: 613 LAMEKGIDLSFNAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVF 672 Query: 150 SLKINGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 S++ +G E+ + Y + + +++ E Sbjct: 673 SVRDSGEGIAPEQLPHVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGS 732 Query: 208 VLSALLEK 215 + + Sbjct: 733 EFRFTVPR 740 >gi|256371019|ref|YP_003108843.1| histidine kinase [Acidimicrobium ferrooxidans DSM 10331] gi|256007603|gb|ACU53170.1| histidine kinase [Acidimicrobium ferrooxidans DSM 10331] Length = 347 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 14/148 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 + H++ +P+GAI E L + +L++ + L R+ G Sbjct: 128 VSHELKTPVGAIVLLAEALAQEDEPTTAQRLVQRIVDEGDRLARLVSDLLDLSRIEEGSG 187 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASL 130 + +E V E F +R ++ +R ++ L + ++ Sbjct: 188 VVLAEFDARSLVEAVRERFDETARRADLTLDALVPVTPTMVVGDRWQLESALSNLVDNAI 247 Query: 131 PR---GGKVTISVQDSKNENIFSLKING 155 GG V IS+ S + + +++ G Sbjct: 248 KYSEPGGTVEISLDASDDTIVLAVRDEG 275 >gi|120611204|ref|YP_970882.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589668|gb|ABM33108.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 688 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGY-- 73 I HD + + + L+L+ + + + R S+ A + + LAF Sbjct: 318 IAHDFNNMLQGVVLPLQLIGQRHARGHMDDIPRYVEAGLSSARRAAALTQRL-LAFSRRQ 376 Query: 74 ---TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125 VD+ + ++E ++ + + R+ + W E A +LNL + Sbjct: 377 PLDVRPVDAAASIRNLEPMLRNTCGENTRLDIEIPEDLWPVLTDVHQLESA--VLNLAIN 434 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 A ++P GG++ I+ + ++ L P ++ Sbjct: 435 ARDAMPEGGRLRIAGDNLGGAQALPPQVREALGLPPGDLVRL 476 >gi|71735973|ref|YP_275436.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556526|gb|AAZ35737.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 697 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLNL + A ++PRGG++TI + + G+ + Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 Y+ L + + PE+I+ Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502 >gi|218887238|ref|YP_002436559.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758192|gb|ACL09091.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 729 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 35/98 (35%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 + LLN+F+ A ++P GG++++ + + I + PE I D + Sbjct: 571 QALLNVFLNALEAMPSGGELSVRLAAAPGNRIAVAVRDTGTGIAPEHLATIFDPYFTTKS 630 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V + + + ++ LL Sbjct: 631 QGTGLGLAIVHKIVEAHGGEVSLRSALGQGTEITFLLP 668 >gi|83649282|ref|YP_437717.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83637325|gb|ABC33292.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 479 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 28/219 (12%) Query: 21 RICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA----IIRLKFMRLA 70 + H++ +P+ +I + LL E + EV+ L+ + + L F RL Sbjct: 259 HVSHELKTPLASIREGVALLQEEVVGQISHGQREVLYLVNENGRALQQLIENLLSFNRLN 318 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124 F S + D+ ++E+ + KR + G ++ L+ ER ++ L Sbjct: 319 F----SGQAQKMTFDVSALVEELLHLHWLSLTHKRQIICVGGPQLTLTAERPRLHSALDN 374 Query: 125 VAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNV--ESTI 176 + ++ G + I ++ + ++ F L++ A PE F G+V + Sbjct: 375 LISNAIAYGASEGRIWLEWNIEDDHFILRVTNTGAPIPEAERSRIFEPFYQGSVKRSGAV 434 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I L V + L + Sbjct: 435 KGSGIGLSVARECVQTQGGELKLLTTTGQLVSFAIYLPR 473 >gi|148255093|ref|YP_001239678.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407266|gb|ABQ35772.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 951 Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 13/132 (9%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIR---LSSMSAIIRLKFMRLAFGY-TGSVD 78 HD + + I +L++L G+ E Q LI S+ A ++ + LAF Sbjct: 602 HDFNNLLTPIVGALDMLQRRGVGGEREQRLIAGAVQSADRAKTLVQRL-LAFARRQPLQP 660 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAK------ILLNLFMVAHASLP 131 + LG + + + +A Q+ + DL +A +LNL + A ++P Sbjct: 661 VAVDLGLLVAGMGELVASTTGPQIKVVVDAARDLPPAKADPNQLEMAVLNLAVNARDAMP 720 Query: 132 RGGKVTISVQDS 143 GG + ISV+ + Sbjct: 721 DGGTLRISVRAA 732 >gi|295838625|ref|ZP_06825558.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces sp. SPB74] gi|295827101|gb|EFG65239.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces sp. SPB74] Length = 573 Score = 35.3 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 17/207 (8%) Query: 24 HDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 H++ +P+ AI E+L+E + + ++L+ + + + R G Sbjct: 317 HELRTPLTAITAVTEVLEEEIDTLDPMIEPAVRLVVSETRRLNTLVENLMEVTRFDAGTA 376 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133 V + + D D A V++ E+ +R + ++ + L + +L G Sbjct: 377 RLVCDDVDIADQITACVDARAWLDAVELD--AERGITARVDPRRLDVILANLIGNALKHG 434 Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188 G V +SV+ + ++ +G P F + + + + Sbjct: 435 GSPVRVSVRVEGPSLVIRVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQA 494 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLEK 215 AH + + D V + L + Sbjct: 495 NAHIHGGDITAANSPDGGAVFTLRLPR 521 >gi|149176869|ref|ZP_01855479.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797] gi|148844306|gb|EDL58659.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797] Length = 491 Score = 35.3 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 44/232 (18%) Query: 18 LCSRICHDIISPI-------GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----F 66 L + + H++ +P+ G I + L E + Q I+ + ++ F Sbjct: 261 LAAGVAHELGTPLNVVSGRAGLISSGQ--LSEADVRSSA-QTIQKETERMTAIIRQLLDF 317 Query: 67 MRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDL------SRERAK 117 R TG+ + I L + Q + + A+ V++ + + + + Sbjct: 318 AR----RTGTEQASIDLIRLAQQTCELMQPLAMKAHVELIVSANENLPVNTVGDPGQLQQ 373 Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 ++ NL A ++P GGK+ I+V + ++ L RF + + Sbjct: 374 VITNLISNAIQAIPDGGKIRITVHSEDIQPPAMIESE--LNRFACLEVIDTGTGMTNIET 431 Query: 178 SHDIQFYYVIL---------------LAHENKIRLLPEIIDDHNVVLSALLE 214 H + +Y + E+ + D L Sbjct: 432 EHVFEPFYTTKDVGEGTGLGLSIAYGIVREHGGWIDVASEKDQGTTFRVWLP 483 >gi|77456489|ref|YP_345994.1| osmolarity sensor protein envZ [Pseudomonas fluorescens Pf0-1] gi|77380492|gb|ABA72005.1| osmolarity-sensing histidine-kinase [Pseudomonas fluorescens Pf0-1] Length = 437 Score = 35.3 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 18/211 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74 L+ + + HD+ +P+ + SLEL+ + + M +R L +F LAF Sbjct: 223 ELMLAGVSHDLRTPLTRLRLSLELMGDRTDLTDDM--VRD-IEDMDAILDQF--LAFIRD 277 Query: 75 GSVD--SLIGLGD-IEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAKILLNLFMVAHASL 130 G + + L D + +V + +++V++ + L R K LLN ++ +A Sbjct: 278 GRDESVEEVDLSDLVREVAAPYNQTEEKVRLRLEPIQPFPLRRVSMKRLLN-NLIGNALN 336 Query: 131 PRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQF 183 GG V ++ + L + A + + G+ + Sbjct: 337 HAGGSVDVAAYVSGDTSAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRARGGKGTGLGL 396 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V +A + + + L Sbjct: 397 AIVKRIASMHGGNVELRNRSGGGLEARVRLP 427 >gi|330807932|ref|YP_004352394.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376040|gb|AEA67390.1| Putative Histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 489 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 33/217 (15%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69 + L S I HD+ +PI + +ELL++ ++ + ++L+ A+ +K Sbjct: 286 SQLFSAISHDLRTPITRLRLRVELLEDENLQAKFGRDLDELELL---VKGALQCVK---- 338 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLN 121 + I D+ V++ + + RV + A + + N Sbjct: 339 ----DTDIHENIEPVDLNHVLDCLVEPYLAPNGNGRVTQDGRALAPYPGKPLALKRCIGN 394 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDS 178 L +L G + + D + I + G R + F + Sbjct: 395 LI---DNALKYGQNAHLHIDDDETAFILHVDDEGPGVPEQRLEQVFEPHF--RLAGQQQG 449 Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + +AH + + + + + + ++ L + Sbjct: 450 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPR 486 >gi|319792685|ref|YP_004154325.1| pas/pac sensor signal transduction histidine kinase [Variovorax paradoxus EPS] gi|315595148|gb|ADU36214.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax paradoxus EPS] Length = 375 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 14/177 (7%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLK----F- 66 + + HD+ +P+ AI ++LL E V+ +R S+ A ++ F Sbjct: 154 FAEQMVGIVSHDLRNPLSAILMGVQLLARVEKERRTRVLGHVRDSAERAQRLIEELLDFT 213 Query: 67 -MRLAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 R+ G + + I L ++ D +A R + + + ++ + Sbjct: 214 QARIGKGLSVKLGE-IDLHEVAAHAVDELGLAFPNRKIMHVVRGEGHCIADADRLAQLIG 272 Query: 124 MVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +A + G G I V+ + +L I A P + + + + + Sbjct: 273 NLASNAATYGLPGT-PIIVRTETDGASATLSIENQGAPIPAEMVATLFEPMVRGVGA 328 >gi|310821064|ref|YP_003953422.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309394136|gb|ADO71595.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 748 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 27/162 (16%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK-F 66 L AL + + + H+I +P+GAI + + LD G + E + +I + F Sbjct: 469 RLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVVTAF 528 Query: 67 MRLA------FGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRE 114 + A FG T L ++ I ++ V++ T K+D E Sbjct: 529 LDYARPLKQNFGPT-------DLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAE 581 Query: 115 RAK-ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKIN 154 + K +L+NL A ++ P G++T+ F + Sbjct: 582 QLKQVLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVA 623 >gi|322436097|ref|YP_004218309.1| histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321163824|gb|ADW69529.1| histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 257 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 20/153 (13%) Query: 24 HDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMS----AIIRLKFMRLAFGYTG 75 H+I +P+ AI N + E D+ E + L++ S A L F R G Sbjct: 37 HEINNPLEAITNLAYLAREEADDPEKVREYVSLLQEQLASVVQIAHQTLSFHR---GAAA 93 Query: 76 SVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128 + + +G+I K++++ R A +++ NL + A Sbjct: 94 L--AAVDMGEITDAAVRVYQWKLAAKQIRLLKEIVPDAKVRAHAGELLQVMSNLVVNAID 151 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 +LP G + + V+ + + ++ +G+ P Sbjct: 152 ALPEKGTLRLRVRRCEAQVHLTIADDGHGIPEP 184 >gi|182412287|ref|YP_001817353.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839501|gb|ACB73753.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 642 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMRLAFG 72 I HD + + AI + G + +Q I ++ A +K F R A Sbjct: 276 IAHDF-NNLLAIIHGYSEFCLQGAAEPAVMQKSLQEIHRAAQRASGLVKQILTFSRKA-- 332 Query: 73 YTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLSRERAK-ILLNL 122 + D+ Q+ D +A + + ++ + + + + I+LNL Sbjct: 333 -----EIRYAPVDLNQLARDLVALMSETFPRTITFTLDLAEKLPPLLADQTQVQQIVLNL 387 Query: 123 FMVAHASLPRGGKVTIS 139 + A ++P GG + +S Sbjct: 388 CVNARDAMPDGGSIVVS 404 >gi|330986412|gb|EGH84515.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 697 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLNL + A ++PRGG++TI + + G+ + Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 Y+ L + + PE+I+ Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502 >gi|330888950|gb|EGH21611.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 697 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLNL + A ++PRGG++TI + + G+ + Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 Y+ L + + PE+I+ Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502 >gi|311106449|ref|YP_003979302.1| sensory box protein 6 [Achromobacter xylosoxidans A8] gi|310761138|gb|ADP16587.1| sensory box protein 6 [Achromobacter xylosoxidans A8] Length = 1000 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 20/182 (10%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR---LSSMSAI----IRLKFMRLA- 70 I HD + + I +L L+ G ++ ++ + S+ A L F R Sbjct: 626 IAHDFNNMLQGISGALYLVQRKITAGAPEQALRFVDVAMDSANRAAHLTQRLLTFSRRQP 685 Query: 71 -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 F ++ S++ L + +D R ++ WT E A +LNL + Sbjct: 686 IDPKPFCAASALQSMVALFHRYTGERVALRLDLRQEL-WTVCCDKNQFENA--MLNLVIN 742 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFY 184 A ++P GG +T++ ++ + ++ L+ G + RF E + + +H + Sbjct: 743 ACDAMPNGGTLTVAARNVEPDDPLLLQSVGAHSGRFVEVSVTDEGCGMAPDVLAHAFDPF 802 Query: 185 YV 186 + Sbjct: 803 FT 804 >gi|325109780|ref|YP_004270848.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970048|gb|ADY60826.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 461 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 18/166 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L + + H+I +P+ A+ L+LLDE E++ +I L+ R Sbjct: 236 LAAGLHHEIKNPLAAVTLHLQLLDEELDGCPVSDEAREMLDVINTELARIGGVLESFR-D 294 Query: 71 FGYTGSVD-SLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLS---RERAKI---LL 120 F + + + + ++ + IA RVQ+S L +R ++ L Sbjct: 295 FAAVDRLWLADVNMRELIEQQTRLIAPQAAASRVQISVDSSVRTLPTISGDRTRLEQVLH 354 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 NLF+ A ++ GG++ +S + N + + P+ + Sbjct: 355 NLFVNAIEAMKTGGQLRVSAVVAPASNRLVVTVADTGGGIPDDLKE 400 >gi|257484781|ref|ZP_05638822.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011167|gb|EGH91223.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 697 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLNL + A ++PRGG++TI + + G+ + Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205 Y+ L + + PE+I+ Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502 >gi|254719182|ref|ZP_05180993.1| Nitrogen regulation protein ntrB [Brucella sp. 83/13] gi|265984179|ref|ZP_06096914.1| signal transduction histidine kinase [Brucella sp. 83/13] gi|306838175|ref|ZP_07471031.1| Nitrogen regulation protein ntrB [Brucella sp. NF 2653] gi|264662771|gb|EEZ33032.1| signal transduction histidine kinase [Brucella sp. 83/13] gi|306406765|gb|EFM62988.1| Nitrogen regulation protein ntrB [Brucella sp. NF 2653] Length = 380 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + + A R + + R ++ L Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|298527855|ref|ZP_07015259.1| integral membrane sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511507|gb|EFI35409.1| integral membrane sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 574 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 105 TGEKIDLSRERAKILL-NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARF 160 +I + R++ ++L NL + ++P+GG++ I+ + +++ + + Sbjct: 451 DLPRILMDRKKIHLILDNLISNSMHAMPQGGQIHITAGSSRAQNGQDLVKISLTDTGPGL 510 Query: 161 PEKFTQIV 168 PE+ ++ Sbjct: 511 PEQVLAVL 518 >gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS278] Length = 774 Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 31/203 (15%) Query: 23 CHDIISP----IGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78 CHDI++ + I+ ++LD IE M+L A + +R+ G Sbjct: 580 CHDILTSGQYLLEVIN---DILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKS 636 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI 138 ++ + I R +I++NL A P GG+VT+ Sbjct: 637 LVLD-----------------ADIEGNIPVIADRRATKQIMVNLLSNAVKFTPEGGRVTM 679 Query: 139 SVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 + +++ + + G +LAR F Q+ + + T + LA Sbjct: 680 RSRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQV-ESQMTKTYHGSGLGLAIARSLAQL 738 Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215 + + +H V+ L + Sbjct: 739 HGGSMRLRSRLEHGTVVRVTLPR 761 >gi|330942476|gb|EGH45070.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas syringae pv. pisi str. 1704B] Length = 386 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76 HD+ +P+ AI+ S ELL ++++ Q+++ S A L F R G+ Sbjct: 175 HDLRNPLFAINASAELLLRRPLDEKAQQVVQHILTSGQRASQLVDDVLDFARGRMGH--- 231 Query: 77 VDSLIGLGDI---EQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125 + + + ++ +E I+ +RV E+I ER A++L NL Sbjct: 232 -GIPLSIHEAPGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 288 Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179 ++ G + + V + +F L + PE + I Sbjct: 289 -SNAISHGDAESPVEVTADVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 347 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + Y +A + L + V + + Sbjct: 348 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 382 >gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 996 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 25/224 (11%) Query: 15 VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-------FM 67 A L S + H+I +P+ AI LELL+ + V+ +R + S+ L+ F Sbjct: 506 SAFLAS-MSHEIRTPLNAILGHLELLERLPQAAPVVARVRTVASSSRALLQILNDILDFS 564 Query: 68 RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKR------VQVSWTGEKIDL--SRERAKI 118 ++ G D + Q F+ + +R + + L ++ Sbjct: 565 KVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHTIDAALPRYYLGDPGRIRQM 624 Query: 119 LLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFT-------QIVDG 170 ++NL A RG + +S +++ P K +D Sbjct: 625 VVNLLSNAIKFTDRGSVSIEVSAGKGNPAIPLVIRVTDTGIGIPAKRQARVFDAFDQIDA 684 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + +A + + + + L Sbjct: 685 SITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTVTLP 728 >gi|295690484|ref|YP_003594177.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432387|gb|ADG11559.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 575 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 27/154 (17%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75 HD + + + L+LL+ +L R AI R L F R + Sbjct: 221 HDFNNLLMVASSGLDLLERTSDPARRERL-RDGIRQAIDRGASLTQQLLAFSR----RSP 275 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126 ++ +G + + R V+ W E +D S+ +LN+ + A Sbjct: 276 LKPEVVDIGQRLSGMLAILDRSLREDVTVRMQLPPDLWRVE-VDASQMEV-AVLNIAINA 333 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++P GG +TI ++ + + G++ R Sbjct: 334 RDAMPDGGTITIEARNEPSGRPDGV---GDMVRL 364 >gi|188583305|ref|YP_001926750.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179346803|gb|ACB82215.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 431 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 18/205 (8%) Query: 24 HDIISPIGAIHNSLELLDEVGI---EDEVMQL---IRLSSMSAIIRLKFMRLAFGYTGSV 77 H++ +P+ A+ L+ L + M L +R ++ L+ RL G Sbjct: 225 HELRTPLAAMQIQLDSLGGPAGGGGDARRMALADGLRRANRLVDQLLRLARLDDGAEA-R 283 Query: 78 DSLIGLGDIE-QVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILL-NLFMVAHASL 130 + + LG + + D + + +R ++ T + S + ++L NL A Sbjct: 284 PASVDLGQLLLDCVADHVVLAERKDINLGVHIETPATLHASEDEVRVLFANLVDNALRYT 343 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVI 187 P GG+V + + + + +++ G F + ++ + Sbjct: 344 PSGGQVDVRLLNRNGACVVTVRDTGCGLPPGSEGRLFDRFFRAAPPE-VEGTGLGLAIAR 402 Query: 188 LLAHENKIRLLPEIIDDHNVVLSAL 212 +A N + L E D L+ + Sbjct: 403 RIAERNDLGLTVENRRDGQGTLATV 427 >gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 30/226 (13%) Query: 14 LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA----IIR 63 L A+ H++ +P+ AI E+L + + + I S+ Sbjct: 429 LAAM-----SHELRTPLNAIMGFSEVLLDQHFGPLNDKQQVYVNDILDSARHLLEIINDV 483 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRERA---- 116 L +L G T + + + + I A K + V + + + Sbjct: 484 LDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDVRR 543 Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQ---IVD 169 +I+ NL A P GG + + +D+ S++ G E + V Sbjct: 544 FKQIMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVEDTGIGIAATHAEHIFEPFYQVS 603 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214 GN+ + + L + R+ E + + +L Sbjct: 604 GNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLP 649 >gi|116624045|ref|YP_826201.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227207|gb|ABJ85916.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1210 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 15/162 (9%) Query: 35 NSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDI----EQV 89 E + + + L + + +L LAFG + L ++ + Sbjct: 868 AGKESTSGTSLAAQEIVLAAERAANLTRQL----LAFGRRQVMQPRSLDLTEVVSSLTSM 923 Query: 90 IEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNE 146 ++ + + R+Q+ G + + ++L+NL + A ++P GG++TI + Sbjct: 924 LQRVLGANIRLQLIPHGSPLITRADSGMLDQVLMNLVVNACDAMPDGGQLTIETTERTFT 983 Query: 147 NIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSHDIQFYYV 186 + +I A + T G ++ H + ++ Sbjct: 984 QREARRIPDARAGRYVSLRVTDTGSGISPESL-PHIFEPFFT 1024 >gi|291300709|ref|YP_003511987.1| aminoglycoside phosphotransferase [Stackebrandtia nassauensis DSM 44728] gi|290569929|gb|ADD42894.1| aminoglycoside phosphotransferase [Stackebrandtia nassauensis DSM 44728] Length = 443 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 11/97 (11%) Query: 52 LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111 LI + L RL G D L + A +V W +I Sbjct: 193 LIDARTRRVAAVLDVARL-----GVADRYTDLAAA---TRGWRAGGLDKRVWWRYGEIPA 244 Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148 +R ++ L A LPR G + + + Sbjct: 245 DADRVRLYRLL---AEFCLPRPGTGRVEPRQDGGDVR 278 >gi|254710195|ref|ZP_05172006.1| Nitrogen regulation protein ntrB [Brucella pinnipedialis B2/94] gi|256031689|ref|ZP_05445303.1| Nitrogen regulation protein ntrB [Brucella pinnipedialis M292/94/1] gi|261317753|ref|ZP_05956950.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|265988784|ref|ZP_06101341.1| signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|261296976|gb|EEY00473.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|264660981|gb|EEZ31242.1| signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 380 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + + A R + + R ++ L Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343 >gi|108762754|ref|YP_631541.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108466634|gb|ABF91819.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 747 Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 19/188 (10%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70 L AL + + + H+I +P+GAI + + LD V + E + + + RL + A Sbjct: 468 RLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPVHYQGEDAEFLEVIVEEVN-RLNGVVTA 526 Query: 71 F-GYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLSRERAK-IL 119 F Y + G D+ +V+ + + V++ ++D E+ K +L Sbjct: 527 FLDYARPLKQSFGTTDLNEVVTRTMRLIQNDVPSNLHLAVELDLMLPRVDGDAEQLKQVL 586 Query: 120 LNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178 +NL A +L R G++++ + K E L+ G A F E + S Sbjct: 587 INLVQNAVQALETREGRISVRTE--KPERFGELRSAG--AEFVEVRVSDNGPGIPSDQHP 642 Query: 179 HDIQFYYV 186 H +Y Sbjct: 643 HIFVPFYT 650 >gi|323136256|ref|ZP_08071338.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322398330|gb|EFY00850.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 628 Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 14/144 (9%) Query: 22 ICHDIISPIGAIHNSLELL-------DEVGIE--DEVMQLIRLSSMSAIIRL-KFMRLAF 71 I HD + + I SL +L ++ G + D +Q S+ + RL F R+ Sbjct: 257 IAHDFNNMLAVIVASLNILRRKLDRKEDGGEQMIDSALQS-ADSAAGLVRRLLAFSRIQP 315 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSRERAK-ILLNLFMVAHA 128 +D+ + DI ++++ + + R++ ++ + + LLNL + A Sbjct: 316 LAPTPLDANKFVSDISKMLKRALGENIRLETVLADGLWSTRIDANELESALLNLAVNARD 375 Query: 129 SLPRGGKVTISVQDSKNENIFSLK 152 ++P GG +TI + ++ ++ + Sbjct: 376 AMPNGGTLTIETANRALDDAYAAE 399 >gi|226225802|ref|YP_002759908.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226088993|dbj|BAH37438.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 672 Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 81 IGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI 138 + L + ++ + RV ++ + L E + +LNL A ++P GG +T+ Sbjct: 395 LDLTEPMRLRRSVGSHAVRVATELEPGVQGRGLPGEIREAMLNLVQNAIDAMPEGGTLTV 454 Query: 139 SVQDSKNENIFSLKING 155 + S++ G Sbjct: 455 RCWGEGTDACLSVQDTG 471 >gi|114707286|ref|ZP_01440183.1| sensor kinase [Fulvimarina pelagi HTCC2506] gi|114537167|gb|EAU40294.1| sensor kinase [Fulvimarina pelagi HTCC2506] Length = 841 Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 17/139 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGY-TGS 76 I HD + + I S++ L + + LI+ S+ A ++ + LA+ Sbjct: 472 IAHDFNNVLTVITASVDFLLMNQKPGDPSFQDLLLIKQSANRAASLVRQL-LAYSRRQTM 530 Query: 77 VDSLIGLGDI--------EQVIEDFIAVDKR-VQVSWTGEKIDLSRERAKILLNLFMVAH 127 ++ L D+ +++ D +++R + W E+ + NL A Sbjct: 531 RPKMLNLTDVVADLDLLLKRIAGDKTKLERRHARNLWPVMADIGQFEQV--ITNLVGNAR 588 Query: 128 ASLPRGGKVTISVQDSKNE 146 ++P GG + I ++ + Sbjct: 589 DAMPNGGTIKIETRNVEEG 607 >gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 478 Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 19/178 (10%) Query: 22 ICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFG 72 + HD+ +P+ AI + +LD E ++ + R L R G Sbjct: 248 VSHDLKTPLTAIQGFAQAILDGTAQSPETLRNAATVIYNEASRMYRLVLDLLTLARFDAG 307 Query: 73 YTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128 V + D+ + + F + ++ V E L A +++ L + Sbjct: 308 TADLVFEKVDPQDLLRETVRRFSPLAQKAGVILRLEDASLPVLFADGERLMQALANLMDN 367 Query: 129 SL---PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180 +L P GG + + + + + ++ G E F + GN + D Sbjct: 368 ALKYTPAGGTIVLRGKVEEGHLLLEVQDTGKGISPEEQTRIFERFYRGNPSRSQDGEQ 425 >gi|226226746|ref|YP_002760852.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226089937|dbj|BAH38382.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 862 Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 4/106 (3%) Query: 85 DIEQVIEDFIAVDKRVQVSWTG---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141 DIE+++ + D +QV+ + + ++++NL + A ++P GG +TI Sbjct: 569 DIERMLRRVLGDDVTLQVALDDHLHPVLADPGQIEQVVMNLAVNARDAMPSGGTLTIRTG 628 Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186 + + + F+ +G + G+ + + + ++ Sbjct: 629 NEEVDATFAALHDGASLGPHAVISVSDTGSGMSRETQARIFEPFFT 674 >gi|84625437|ref|YP_452809.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369377|dbj|BAE70535.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 350 Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 66 FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILL-- 120 R A G V +L ++ + + + + + +R+QV W ++ + +++L Sbjct: 201 LFRAALGAGEGVSTLRAECELAERYLAIESLRLGERLQVRWHRQEPLPWKLPMPRLVLQP 260 Query: 121 ---NLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 N + + +P GG + +S++ ++ + Sbjct: 261 LVENAVLHGVSRMPEGGTLYLSLRQRGSQLQIRI 294 >gi|327479681|gb|AEA82991.1| sensory box histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 678 Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIR----LKFM 67 L S + HD + +G I SL LL+ + L R S+ A L F Sbjct: 307 LTSGLAHDFNNLLGGIVGSLGLLERRLDQGRHDDLRRHLANAQSSADRAAALTHRLLAFS 366 Query: 68 R---LAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123 R L T + + D+ ++ I +A + + + D ++ +LLNL Sbjct: 367 RRQPLQMRPTDGNALVRSMRDLLQRTIGPLVAFELMLADDLWLTRCDANQLE-NVLLNLA 425 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKI 153 + A ++P GG++ IS + + ++ + ++ Sbjct: 426 LNARDAMPNGGRLRISTANRELDDAAAARL 455 >gi|94970627|ref|YP_592675.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552677|gb|ABF42601.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 766 Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VDSLIGL----GDIEQVIEDFIA 95 ++ + +V Q+ + +A + + LAF I L D++++++ I Sbjct: 425 NDPELRTDVEQIDEAGARAAALTSQL--LAFSRRQMLQPRTINLNGLVRDLQKMLQRLIG 482 Query: 96 VDKRVQV---SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 + G + +++LNL + A ++PRGG + + ++ + + F+ Sbjct: 483 EHIELTTRAGEGLGAVKADPGQIEQVILNLVVNARDAMPRGGSLVLETRNVQVDEAFA 540 >gi|78221916|ref|YP_383663.1| histidine kinase [Geobacter metallireducens GS-15] gi|78193171|gb|ABB30938.1| histidine kinase [Geobacter metallireducens GS-15] Length = 248 Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 69/213 (32%), Gaps = 18/213 (8%) Query: 18 LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRL 69 + + + H++ +P+ I ++ ++ L E + + V +++ + A L F R Sbjct: 35 MAAGVVHELNTPLSVIVSATQMILREEELPEFVREMVERVNEEAHRLAELTKGVLSFARR 94 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSRERAK-ILLNLF 123 G D+ +G++ + KR + I R K +++NL Sbjct: 95 DSGGRAEADANQVIGEVMTFLR--FEAGKRSIGVIEDLDHRLPFIAADANRVKQVIINLV 152 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDI 181 M A ++ GG + + + + P+ +I + + + Sbjct: 153 MNAFQAMGEGGTLFLRTVQESETAVTVQVADTGPGIPPDAQERIFTPFFTTKEPGEGTGL 212 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + + Sbjct: 213 GLFITRKLMEGIGGAIAVKSVVGEGTTFTLTFP 245 >gi|265754966|ref|ZP_06089880.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234577|gb|EEZ20156.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1417 Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGN 171 KI+ NL A P GGK+ SV + + ++ P + F++ + + Sbjct: 1020 KIVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSS 1079 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DS I + L + +K + + V + L Sbjct: 1080 FSG--DSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLP 1120 >gi|258512962|ref|YP_003189219.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-01] gi|258513223|ref|YP_003189479.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-01] gi|256634865|dbj|BAI00840.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-01] gi|256635126|dbj|BAI01100.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-01] gi|256637920|dbj|BAI03888.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-03] gi|256638181|dbj|BAI04148.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-03] gi|256640974|dbj|BAI06935.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-07] gi|256641235|dbj|BAI07195.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-07] gi|256644029|dbj|BAI09983.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-22] gi|256644290|dbj|BAI10243.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-22] gi|256647084|dbj|BAI13031.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-26] gi|256647345|dbj|BAI13291.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-26] gi|256650137|dbj|BAI16077.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-32] gi|256650398|dbj|BAI16337.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-32] gi|256653128|dbj|BAI19061.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653389|dbj|BAI19321.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656181|dbj|BAI22107.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-12] gi|256656442|dbj|BAI22367.1| two component sensor histidine kinase KdpD [Acetobacter pasteurianus IFO 3283-12] Length = 895 Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 18/172 (10%) Query: 3 KNICFNLSSMDL-VALLCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIRLSSM 58 ++ + L ALL S I HD+ +P+ +I +SLE E E+ +L+ Sbjct: 656 DQARLDVETDKLRGALLTS-ISHDLRTPLASILGATSSLESYGEELDENARKELLSTIHD 714 Query: 59 SAIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEK 108 A +F RL G + +G++ + D ++ + Sbjct: 715 EADRLNRFVANLLDMTRLEAGALQPRKERVDIGEVIASALCRAARLLSDHETEMVIEPDL 774 Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157 L + + L N+ A P G K+ ++ + + + + G Sbjct: 775 PMLLLDDVLLEQALFNILDNAGKYTPVGTKIVVTASVAADTLLIRVTDEGEG 826 >gi|237724524|ref|ZP_04555005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437083|gb|EEO47160.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1417 Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGN 171 KI+ NL A P GGK+ SV + + ++ P + F++ + + Sbjct: 1020 KIVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSS 1079 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DS I + L + +K + + V + L Sbjct: 1080 FSG--DSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLP 1120 >gi|212693766|ref|ZP_03301894.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855] gi|237709290|ref|ZP_04539771.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|212663655|gb|EEB24229.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855] gi|229456675|gb|EEO62396.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1417 Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGN 171 KI+ NL A P GGK+ SV + + ++ P + F++ + + Sbjct: 1020 KIVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSS 1079 Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 DS I + L + +K + + V + L Sbjct: 1080 FSG--DSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLP 1120 >gi|58583632|ref|YP_202648.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188575116|ref|YP_001912045.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428226|gb|AAW77263.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188519568|gb|ACD57513.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 350 Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 66 FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILL-- 120 R A G V +L ++ + + + + + +R+QV W ++ + +++L Sbjct: 201 LFRAALGAGEGVSTLRAECELAERYLAIESLRLGERLQVRWHRQEPLPWKLPMPRLVLQP 260 Query: 121 ---NLFMVAHASLPRGGKVTISVQDSKNENIFSL 151 N + + +P GG + +S++ ++ + Sbjct: 261 LVENAVLHGVSRMPEGGTLYLSLRQRGSQLQIRI 294 >gi|268609372|ref|ZP_06143099.1| two-component sensor histidine kinase [Ruminococcus flavefaciens FD-1] Length = 353 Score = 35.3 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%) Query: 20 SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 S + H+I +PI I NS E+L + + ++ Q S +A RL Sbjct: 139 SNVSHEIKTPIAVIQNSAEMLKKPDLSEDKRQEYVDSITNAAKRL 183 >gi|146339133|ref|YP_001204181.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146191939|emb|CAL75944.1| putative sensor histidine kinase with a Response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 565 Score = 35.3 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 23/177 (12%) Query: 24 HDIISPIGAIHNSLELLD---EVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFG------- 72 HD + + I L++LD + +M +I+ + A + + LAF Sbjct: 202 HDFNNLLMVISGGLDMLDRQADPARRRRLMDGMIQAAQRGASLTRQL--LAFSRRQELKP 259 Query: 73 -YTGSVDSLIGLGDI--EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 + G+ ++ + D + + W E E ++LNL + A + Sbjct: 260 EPVDIARQIGGMRELLDRSLRGDVHVQFEFPEDLWPVEVD--PGELELVVLNLAVNARDA 317 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 +P GG + + N ++ G+ R + + + + ++ Sbjct: 318 MPTGGTIVV--HGENLPNWRDDEVAGDYVRLS---VIDSGTGMTEEVRARVFEPFFT 369 >gi|120611842|ref|YP_971520.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gi|120590306|gb|ABM33746.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] Length = 442 Score = 35.3 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 24/217 (11%) Query: 22 ICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMS-------AIIRLKFMR 68 + HD+ +P+ I + +LL D +++ + + L F Sbjct: 215 VSHDLRNPLTTILLATDLLTRQAASPTPTPPDTAARMLGNITRAGQRARRLIADLLDFTV 274 Query: 69 LAFGYTGSVDSL-IGLGD-IEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 + G SV + L ++IE+ +A R ++S + +I L + Sbjct: 275 VRLGAGLSVSRRPVDLHQLAARIIEELSVAFPGRTIEHTIVGGGEISADPDRIAQLLGNL 334 Query: 126 AHASLPRG---GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSH 179 ++ G VT+S ++ +G+ F +V G + Sbjct: 335 VGNAMAYGTPGSTVTVSTAVESGTARLAVHNHGDPIPRHTLGRLFQPMVRGVAADDTSAR 394 Query: 180 DIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214 + V +A + +++ + DH + Sbjct: 395 SVGLGLFIVRAIAQAHGGQVVVQSSHDHGTEFAFSFP 431 >gi|21244398|ref|NP_643980.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306] gi|21110058|gb|AAM38516.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 578 Score = 35.3 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 69/191 (36%), Gaps = 38/191 (19%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 M + L+S D + S + H++ +P+ A+ N +L++ + + +L++ + +A Sbjct: 192 MQEVALQALASRDAQSHFISTMSHELRTPLNAVINCAQLIETEQMPAQQRELLQSVTANA 251 Query: 61 IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120 + +V++ R+Q+ + K + Sbjct: 252 TAL-------------------RHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAV- 291 Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---------DGN 171 A A+ +G + + V + + + G+ R + + +V G Sbjct: 292 ----CATAASSKGVTLDVRVDSPQAPH-----VMGDEGRIEQVISNLVINAIKFTPAGGT 342 Query: 172 VESTIDSHDIQ 182 V+ ID+ +Q Sbjct: 343 VDLLIDATQVQ 353 >gi|322419476|ref|YP_004198699.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125863|gb|ADW13423.1| integral membrane sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 662 Score = 35.3 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 23/222 (10%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----II 62 L A+ L + + H+I +P+ I + ELL ED E + I Sbjct: 443 KLAAIGELAAGVAHEINNPMAIIRGNTELLQLCVPEDAPNREEVDTIFQQVKRVERIVSN 502 Query: 63 RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRER 115 LKF R + L ++ I + ++ + ++ ++ Sbjct: 503 LLKFAR----REQMEHGDVRLNELLHEIVGQLGHQVSLEGIEVVELYAGEVAVVEGDGDQ 558 Query: 116 AKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVE 173 + + NL + A ++P GG + I + +++ +K++ E Q+ + Sbjct: 559 LRQVFTNLVLNAVQAMPEGGVLCIKSAPVGSGDLYEVKVSDTGVGIELENLRQVFNPFYT 618 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + + E+ + E + S +L + Sbjct: 619 TKANGTGLGLSVSYGIVREHGGCIDVESVPGQGSSFSVILPR 660 >gi|70731912|ref|YP_261654.1| sensor histidine kinase KdpD [Pseudomonas fluorescens Pf-5] gi|68346211|gb|AAY93817.1| sensor histidine kinase KdpD [Pseudomonas fluorescens Pf-5] Length = 890 Score = 35.3 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 4/102 (3%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL----ARFPEKFTQIVDGNV 172 ++L+NL A P G V IS + + I + +G + F G Sbjct: 779 RVLVNLLDNAAKYTPAGTLVQISARQVDQQIILQVSDSGPGCPKGSSPASLFEAFSRGQQ 838 Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ES + + + + R+ + D + L Sbjct: 839 ESAVAGIGLGLALAKRIVEAHGGRIEAQPHADAGLSFVITLP 880 >gi|239996345|ref|ZP_04716869.1| histidine kinase [Alteromonas macleodii ATCC 27126] Length = 593 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 I H+ +PI AI ++LEL+ +E++ +LI+ + + RL Sbjct: 252 ISHEFRAPISAIISALELI--PNMEEQRTRLIQQ-AEQSSYRL 291 >gi|170742982|ref|YP_001771637.1| histidine kinase [Methylobacterium sp. 4-46] gi|168197256|gb|ACA19203.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 544 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134 G V+ + L + + D + V + ++D ++ LLN+ + A ++P GG Sbjct: 247 GLVEGMRDL--ANRTLGDAVTVVTELAPELRNARLDPTQTEV-ALLNVLINARDAMPSGG 303 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 VTI ++ + RF + + + + ++ Sbjct: 304 TVTIRTENREIGPDEIGPGLPPAGRFVAISITDTGTGMPPEVLARVTEPFFT 355 >gi|114765683|ref|ZP_01444782.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Pelagibaca bermudensis HTCC2601] gi|114542005|gb|EAU45039.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Roseovarius sp. HTCC2601] Length = 684 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 30/185 (16%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS------SMSAIIRLKFMRLAFG 72 + HD + + AI SLEL+ + G DE + + + + + RL LAF Sbjct: 325 LAHDFNNLLTAIAGSLELITSRLDEGRTDEAHRFVEAALASTERAATVTQRL----LAFS 380 Query: 73 YTGSV-DSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAK-ILLN 121 S+ + + + + +ED + QVS W + + + LLN Sbjct: 381 RRQSLLPAPTDVPALVRGMEDLVRRAIGPQVSVTTRFATDMW---PAMVDGNQLENALLN 437 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181 + + A ++P GG + I + G + G + + Sbjct: 438 ICLNARDAMPDGGLIEIEAGNETLSAGTEHLAAGAYVKL--SVRDSGSGMTPEQL-AKAF 494 Query: 182 QFYYV 186 Y+ Sbjct: 495 DPYFT 499 >gi|312962944|ref|ZP_07777430.1| multi-sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] gi|311282713|gb|EFQ61308.1| multi-sensor signal transduction histidine kinase [Pseudomonas fluorescens WH6] Length = 747 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 94 IAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 +A++K + +S+ E ++L NL A PR G + IS + E +F Sbjct: 613 LAMEKGIDLSFNAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVF 672 Query: 150 SLKINGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 S++ +G E+ + Y + + +++ E Sbjct: 673 SVRDSGEGIAPEQLPYVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGS 732 Query: 208 VLSALLEK 215 + K Sbjct: 733 EFRFTVPK 740 >gi|83643473|ref|YP_431908.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631516|gb|ABC27483.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 484 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 15/156 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSV 77 I HD+ +P+ + + LELL + + ++ +++ A L+ +R+A +G Sbjct: 253 IAHDLRTPLTRVRSRLELLCQKDLPEDARGVVQEIIGEADQLLQTFNALLRIARIESGGY 312 Query: 78 DSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILL----NLFMVAH 127 + D+ ++ D +A DK +S + + + +L NL A Sbjct: 313 SANFSEVDLHGLVADAVELYEALAADKSQTLSLDLAQGIIVKGDRDLLFQAIANLLDNAI 372 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 P G V + ++ + ++ + S+ G E+ Sbjct: 373 KYTPVNGNVGVRLR-AFDQAVISIWDEGPGISEDER 407 >gi|27375414|ref|NP_766943.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|1834376|emb|CAA70860.1| RagB [Bradyrhizobium japonicum] gi|27348551|dbj|BAC45568.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 474 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 23/161 (14%) Query: 22 ICHDIISPIGAIHNSLE--------LLDEVGIEDEVMQLIRLSSMSAIIRLKFM------ 67 I HD+ +P+ + +LE L D I D+ + I S L+ Sbjct: 242 IAHDLRTPLTRVRLALERGRTHAATLEDLQEITDKAIAGIDQSLAIVTALLRLTEIENNR 301 Query: 68 RLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL----NL 122 R+A FG + L ++ V E IA DKR+ + E+ +L NL Sbjct: 302 RMAGFGEVALDEI---LREVCDVYEP-IAEDKRIALGVVIERNVQVWGDRDLLFEAVANL 357 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A P GG+V ++++ + + G R E+ Sbjct: 358 VDNAVKFTPSGGRVELALEAEDGTALVRVSDTGPGIREQER 398 >gi|90426074|ref|YP_534444.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90108088|gb|ABD90125.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 783 Score = 35.3 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 24 HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGYTGSVDSL 80 HD + + I SL LL + + + +L+ + A L LAF + Sbjct: 425 HDFNNLLAVILGSLSLLKKWLPDDPRTSRLLDGALQGAERGATLTKRLLAF--ARRQELK 482 Query: 81 IGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAKI-LLNLFMVAHASL 130 + +I+++I D + ++ + + E + + + ++ L+NL + A ++ Sbjct: 483 LEAVEIQKLIPDMMDFLRQSLGPNINISIDIPPDVEPVKIDANQLELALMNLAVNARDAM 542 Query: 131 PRGGKVTISVQDSKNENI 148 P GG + I+ ++ + Sbjct: 543 PSGGALVITCRNDGAASS 560 >gi|254465333|ref|ZP_05078744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Rhodobacterales bacterium Y4I] gi|206686241|gb|EDZ46723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Rhodobacterales bacterium Y4I] Length = 771 Score = 34.9 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 74/195 (37%), Gaps = 25/195 (12%) Query: 24 HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77 HD + + AI +LL + G +D LI+ ++ A + + LAF Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAASLVSQL-LAFSRKQTLQ 464 Query: 78 DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130 ++ + D + + ++V ++ + + + S R+ ++L+NL + A ++ Sbjct: 465 PEILDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMKSIRADKRQLEQVLMNLVVNARDAM 524 Query: 131 PRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FY 184 P+GG++ + + + ++ + + + + + I +Q FY Sbjct: 525 PQGGEIRVETEVLALDKPLERDRATVPAG----DWVTVKVSDEGVGIAPDKLQKVFEPFY 580 Query: 185 YVILLAHENKIRLLP 199 + L Sbjct: 581 TTKRTGEGTGLGLST 595 >gi|310818980|ref|YP_003951338.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392052|gb|ADO69511.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 513 Score = 34.9 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 33/226 (14%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIRL 64 L L +++ HD+ +PI A+ + + L E + + L+ + Sbjct: 280 LATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQVERLDRVV 339 Query: 65 -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------- 115 + RL G V+ L D+ +++ED + + + L+R+ Sbjct: 340 STYQRL-----GRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGDHD 394 Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-----KINGNLARFPEKFTQIV 168 A L NL A ++PRGG +T+ + + + G AR E + Sbjct: 395 LLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTRE---RAF 451 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + +V + + + + H +L L Sbjct: 452 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 497 >gi|148654389|ref|YP_001274594.1| histidine kinase [Roseiflexus sp. RS-1] gi|148566499|gb|ABQ88644.1| histidine kinase [Roseiflexus sp. RS-1] Length = 421 Score = 34.9 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 16/212 (7%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGY 73 L + + H+I +P+ AI N+L LL + DE + + + + I ++ M + Sbjct: 208 LTAALAHEINNPLQAIANTLYLLQHRPLSDEKRQRYLGMAQQETERVIASVRRMLDLYRS 267 Query: 74 TGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL---NLFMV 125 +G + L I+Q + V+ + + + +S + NL + Sbjct: 268 SGQGKRPVALHRILDQAIQQASDVLRERGIVVRCLYAPDDLRVSGFAGHLRFACYNLILN 327 Query: 126 AHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQ 182 + ++PRGG +TI QD ++ E ++ D + +++ I+ Sbjct: 328 SAYAMPRGGTLTIRTCWQDDDTAPSVVVEFADTGTLVDEADLPRLFDPDGPVRGEANGIE 387 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + ++ L + DD V+ L Sbjct: 388 LPLSYSIIEQHHGTLTVQCTDDQ-VIFRVCLP 418 >gi|302344083|ref|YP_003808612.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640696|gb|ADK86018.1| integral membrane sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 354 Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAK-ILLNLFMVAHASLPRGGKVT 137 + + + A V + + + R + +LLNL A + PRG +V Sbjct: 208 VEEARSLAS-LFAEQSGVSLELELPPQPVEALIDKGRLRQVLLNLMQNAIQASPRGARVI 266 Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197 +S + + ++ G E +I + + + + + + Sbjct: 267 VSTAREGDFGLITVGDQGCGI-AAEDLARIFNPFFTTKRQGTGLGLAVAQKIVQAHGGGI 325 Query: 198 LPEIIDDHNVVLSALLE 214 + L Sbjct: 326 ESRSAPGQGSSFTVRLP 342 >gi|307726033|ref|YP_003909246.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586558|gb|ADN59955.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 721 Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 17/136 (12%) Query: 22 ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA--IIRLKFMRLAFG-YTG 75 I HD + + AI ++L L+ + G +V+ L+ + A L LAFG Sbjct: 364 IAHDFNNMLQAIMSALSLIRVRLQQGRPTDVVTLVERAEKGAVRAATLTHRLLAFGRQQT 423 Query: 76 SVDSLIGL----GDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVA 126 L+ L D+E +I + V++ W + + L+NL + A Sbjct: 424 LEPRLVSLDAIAHDMEDMIRRVVGSGINVELKLGDGMWLVQCD--PNQMESALVNLCVNA 481 Query: 127 HASLPRGGKVTISVQD 142 ++P GG +TI+ + Sbjct: 482 RDAMPEGGWLTITTSE 497 >gi|182435487|ref|YP_001823206.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776124|ref|ZP_08235389.1| signal transduction histidine kinase regulating citrate/malate metabolism [Streptomyces cf. griseus XylebKG-1] gi|178464003|dbj|BAG18523.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656457|gb|EGE41303.1| signal transduction histidine kinase regulating citrate/malate metabolism [Streptomyces cf. griseus XylebKG-1] Length = 563 Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEK 163 +++ R ++ NL A + ++ + + I ++ +G + Sbjct: 420 PDRVVDPRGLVTVMGNLVDNATDAAAGSERARIEVGLCAEGRTVILEVRDSGPGVPPEQH 479 Query: 164 FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + +G + +H + V LA R+ D V + +L + Sbjct: 480 ASIFTEGWSTKEVPAHGKRGLGLALVRRLAERQGGRVTVSGADGGGAVFTVVLPE 534 >gi|117620003|ref|YP_854673.1| signal transduction histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561410|gb|ABK38358.1| signal transduction histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 471 Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 29/212 (13%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 L S I HD+ +PI + +ELLD+ + + ++L+ A+ +K Sbjct: 274 LFSSISHDLKTPITRLRLRVELLDDEQQIAKFNKDLDELELM---VKGALQTVK------ 324 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA--KILLNLFMV 125 + I DI+ ++E D+R+ + ++ + A + + NL Sbjct: 325 --DTDIHENIEQLDIDAMLEQMAEAMNLHDERLTIEGHCKQPYRGKPLALKRCIGNLV-- 380 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQF 183 + G +V I + D + I + G + F +I + + + + + Sbjct: 381 -DNGIKYGQRVRIIIMDDEEMLILFIMDEGPGLPEDQ-FERIFEPYYRLSTDLAGTGLGL 438 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +AH + L+ E + + L + Sbjct: 439 GIARNIAHAHGGDLVLENRPQGGLQATLSLPR 470 >gi|39995918|ref|NP_951869.1| nitrogen regulation protein NtrY [Geobacter sulfurreducens PCA] gi|39982682|gb|AAR34142.1| nitrogen regulation protein NtrY, putative [Geobacter sulfurreducens PCA] gi|298504932|gb|ADI83655.1| nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 748 Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 23/164 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSMSAIIRL---- 64 + RI H+I +P+ I S + L DE + DE +I S + Sbjct: 533 VARRIAHEIKNPLTPIQLSAQRLRKRYLPRFGDEDRVFDECTAMIVKSVDELKTLVDEFS 592 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAKIL 119 F R+ + S L + + R + L R++ K + Sbjct: 593 NFARM----PAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQLDRDQIKRV 648 Query: 120 L-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 NL A A++ G+V I + + + + P Sbjct: 649 FINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGIPP 692 >gi|239943793|ref|ZP_04695730.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239990246|ref|ZP_04710910.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] Length = 509 Score = 34.9 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 17/207 (8%) Query: 24 HDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74 H++ +P+ AI E+L++ + + L+ + + + R G Sbjct: 283 HELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVSETRRLNDLVENLMEVTRFDAGTA 342 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133 V + + D D A V + E+ ++R + ++ + L + +L G Sbjct: 343 RLVLDDVDVADQVTACIDARAWLDAVHLD--AERGMMARLDPRRLDVILANLIGNALKHG 400 Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188 G V + V+ E + ++ +G P F + + + + + Sbjct: 401 GSPVGVRVRTEGEELVIEVRDHGPGIPEEVLPHVFDRFYKASASRPRSEGSGLGLSIAVE 460 Query: 189 LAHENKIRLLPEIIDDHNVVLSALLEK 215 AH + + D V + L + Sbjct: 461 NAHIHGGDISAANSPDGGAVFTLRLPR 487 >gi|242281125|ref|YP_002993254.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242124019|gb|ACS81715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 791 Score = 34.9 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 17/198 (8%) Query: 4 NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMS 59 + S M+ + L + HD + + I +S+ELL ED + LI +S Sbjct: 410 DQSMQTSKMEAIGQLAGGVAHDFNNMLSGIFSSVELLRRKLPEDPKVRKYLDLIFDASKR 469 Query: 60 AIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---S 112 + L F R + ++++ + ++++ I + + E + + Sbjct: 470 SADLTHKLLSFARKQPAVSTAINAHDSILAAVEILKKTIDRRIDINIISNSEPMMIIGDP 529 Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI----V 168 + +NL + A ++P GG + I + + ++ P F + Sbjct: 530 SMIQSLFINLGINASHAMPDGGTINIECKTVDLDPVYCEVS--PFEVSPGVFLDVEFCDS 587 Query: 169 DGNVESTIDSHDIQFYYV 186 + + H + ++ Sbjct: 588 GTGIPKDVLPHIFEPFFT 605 >gi|162455389|ref|YP_001617756.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161165971|emb|CAN97276.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 506 Score = 34.9 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 27/215 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSS----MSAIIRLKFMRLAFGYT 74 HD+ +P+ A+ S+ L++ G E M L+ L ++ Sbjct: 294 HDLRNPLSALRLSVGFLNDGGPPSEPRVQRTMALVGRQVDRLERMVGDLLDASQIEACKL 353 Query: 75 GSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHAS 129 L + +++ E + V + + + + R + +LN + + Sbjct: 354 DLRVEERDLRELVQEAAELYRPVSPEHPIDLSLPEAPVLVRCDATRIQQVLNNLL--SNA 411 Query: 130 L---PRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHD 180 L P GG++ ++V +++ G +LA E F ++ I Sbjct: 412 LKYSPAGGQIDVAVHGGAGRAEIAVRDRGVGIEAADLAHLFEPFQRL--KASAGAIPGTG 469 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + + RLL E V L + Sbjct: 470 LGLAVAKRIVEAHGGRLLVESEPGAGSVFRVELPR 504 >gi|269957270|ref|YP_003327059.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894] gi|269305951|gb|ACZ31501.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894] Length = 347 Score = 34.9 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 68/178 (38%), Gaps = 17/178 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLA 70 L + + H++ +P+ A+ LE + + G+ + + LS L R+ Sbjct: 118 LIANVSHELRTPVAALQAQLENMVD-GVTEPTPATLELSLAQTERLTRLVTYLLDLSRVE 176 Query: 71 FGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKI---LLNL 122 G + S + +GD+ + ++ + R V T + L + ++ ++NL Sbjct: 177 AGASALTISELAVGDLLEECAQSLSMVEAVKNLRYVVDVTPSDLVLEADAERLRQIVVNL 236 Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180 A P GG++ + ++ + + +G PE ++ + + + Sbjct: 237 LQNAIRHSPPGGEIRLDAYPEGDDVVIEVADDGPGI-APEDRDRVFERFARGKVTASG 293 >gi|197122092|ref|YP_002134043.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196171941|gb|ACG72914.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 844 Score = 34.9 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 16/150 (10%) Query: 22 ICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAI----IRLKFMRLAFGY 73 + H++ +P+ I N++ LL + +I + L R+ FG Sbjct: 477 LSHELRNPLAPIRNAVYLLHHAPPGGPQAERARAVIERQADHLAKLVDDLLDLSRVNFGK 536 Query: 74 TGSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125 +++ ++ + +D + ++ + + + A+I NL Sbjct: 537 IALQRTVLDAREVVRRTCDDLRPLFDERGPALHLDLDDQPVWVDADPTRLAQIAGNLLTN 596 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155 A P GG+V ++V+ + ++ G Sbjct: 597 AAKFTPPGGRVAVTVRAEGGSCVLRVRDTG 626 >gi|115374332|ref|ZP_01461616.1| FrgB [Stigmatella aurantiaca DW4/3-1] gi|115368642|gb|EAU67593.1| FrgB [Stigmatella aurantiaca DW4/3-1] Length = 504 Score = 34.9 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 33/226 (14%) Query: 14 LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIRL 64 L L +++ HD+ +PI A+ + + L E + + L+ + Sbjct: 271 LATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQVERLDRVV 330 Query: 65 -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------- 115 + RL G V+ L D+ +++ED + + + L+R+ Sbjct: 331 STYQRL-----GRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGDHD 385 Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-----KINGNLARFPEKFTQIV 168 A L NL A ++PRGG +T+ + + + G AR E + Sbjct: 386 LLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTRE---RAF 442 Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + + +V + + + + H +L L Sbjct: 443 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 488 >gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 997 Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 10/107 (9%) Query: 86 IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQ 141 ++ + R+ V + ++D R A +++LNL + A ++P GG +T+ Sbjct: 710 ARGMLRWLLGEGVRLVVK-SDPRLDRVRADAGHVEQVILNLAVNARDAMPHGGTLTVGTA 768 Query: 142 D--SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 + S + G R + I + + ++ Sbjct: 769 NVTSDGPSGPGRVPAGRYVRLS---VADTGVGMTEEIQAKIFEPFFT 812 >gi|162449217|ref|YP_001611584.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159799|emb|CAN91104.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 484 Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 29/162 (17%) Query: 19 CSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---- 70 R+ HD++SP+GA+ SL+L DE + ++ L+ R+ Sbjct: 254 AGRVAHDVLSPLGAVALSLDLALRRFDEGDPARKGLE------RGRQAILRVKRMTDGLL 307 Query: 71 -FGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDLSRERAKILLN 121 F G+ ++ +I+D + + ++V + + Sbjct: 308 EFARAGASPEPGARAEVHLIIDDLMVELVPVAVELGAELRVEPFAPCAVAASPGVLTSIL 367 Query: 122 LFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLA 158 ++ +L G V I V D + ++ G Sbjct: 368 ANLI-RNALKYLGDAAVCRVVIRVLDGREAVRIEVEDTGPGV 408 >gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 556 Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 17/152 (11%) Query: 79 SLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL-----SRERAKILLNLFMVAHASL 130 + + + DI Q + IA + +Q+ + + +R +IL+NL A Sbjct: 248 TPVSVHDICQSLRPMIADMAKRAGLQLVYDLDPTVQVMLADARRLRQILINLLSNAIKFT 307 Query: 131 PRGGKVTISVQDS--KNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQ 182 P GGKV + V+ + F++ G + AR E F QI + + + Sbjct: 308 PAGGKVGLEVRGDAERGAVRFTVWDTGIGISAEDAARLFEPFQQIESERQKE-VTGSGLG 366 Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V LA + + E L Sbjct: 367 LALVAKLARLHGGSVSLESEVGVGSRFHVTLP 398 >gi|254474457|ref|ZP_05087843.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. R11] gi|214028700|gb|EEB69535.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. R11] Length = 659 Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 31/208 (14%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAII----RLKFM 67 + + + H+I +P+ I +++++ + + LI + L+F Sbjct: 432 ITAGVAHEINNPVAVIQGNVDVVRMTLPPEAGAEVATELDLIDNQILRISAIVGKLLQFA 491 Query: 68 RLA-FGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDL----SRERAKIL 119 R + FG + + + + + V+ D + + + V E E +++ Sbjct: 492 RPSEFG---TFEESLDMAPVVSDCLVLVDHVVTKQAITVEKDFETSPQVRIDPGELQQVV 548 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179 +NL + A ++ G +T+++++ ++ G + + + Sbjct: 549 INLILNAAQAMGGSGTLTLTLRELDHDG-----APGACLTVAD-----TGPGIAEDVLPS 598 Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNV 207 +Y L + L V Sbjct: 599 VFNPFYTTRLGEGTGLGLSISQTLIQRV 626 >gi|114327402|ref|YP_744559.1| two component system histidine kinase [Granulibacter bethesdensis CGDNIH1] gi|114315576|gb|ABI61636.1| two component system histidine kinase [Granulibacter bethesdensis CGDNIH1] Length = 478 Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 + S I HD+ +PI + E +D+ + ++ + L AFG Sbjct: 271 TFILSAIGHDLRTPITRLKLRAEFIDDEELRRRMIADLDELEEMVSATL-----AFGRDA 325 Query: 76 SVDSLIGLGDIEQVIEDFI--AVDKRV----QVSWTGEKIDLSRERA----KILLNLFMV 125 + + L D+ ++ + + AVD R ++ + G R R + + NL Sbjct: 326 DMQEPMVLLDLPELAKTILDEAVDARPDYTERLHYIGPDHLPVRGRTLPLKRAITNLL-- 383 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + +L GG TI + S + + I P Sbjct: 384 -NNALAYGGSATIRISLS-VNGMVRMDIEDEGPGIPP 418 >gi|78186714|ref|YP_374757.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166616|gb|ABB23714.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 698 Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 22/179 (12%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS-LELLDEVGIEDEV----MQLIRL 55 M + + + ++LV L I HD + + AI +E+L + E ++ I Sbjct: 324 MQEQLNQS-QKLELVGQLAGGIAHDYNNML-AITLGHVEMLLDQVPESHPFFNGLKAILN 381 Query: 56 SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKI 109 S+ ++ L F R +++ L + + + A+ + + W Sbjct: 382 STERSVAITSQLLAFAR----KQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPA 437 Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + +ILL L + A ++ G +TI+ + L ++ + E+ Sbjct: 438 INSISIDPGQFDQILLILCLNARDAIKENGTITINAGEGTTPGYAVLTVSDTGSGINER 496 >gi|254490946|ref|ZP_05104128.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxidans DMS010] gi|224463855|gb|EEF80122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxydans DMS010] Length = 533 Score = 34.9 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 12 MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55 + L +L L + I H+I +P+GAI ++ ELL E D M + Sbjct: 307 LKLASLGRLTASIAHEIRNPLGAISHAGELLAEKQASDPSMSKLTD 352 >gi|163746891|ref|ZP_02154248.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161380005|gb|EDQ04417.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 502 Score = 34.9 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 30/175 (17%) Query: 20 SRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI-------IRLKFMRL 69 S + H++ +P+ +I SLE+L + +L+ +++ +A L F R+ Sbjct: 271 STVSHELRTPLTSIKGSLEMLKSGKIIDLSGAAERLVGMAAKNANILNLLVNDLLDFERI 330 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDL-----SRERAKI 118 TG+++ DI +++D I ++ V+ ++G + L A+I Sbjct: 331 ---DTGNLEVTKRPSDIVGIVKDEIETMKSYDTEQEVEYFYSGVEGPLVAHVDPDRIAQI 387 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQI 167 + NL A P+GGK+ +SV+ + +G + R +KFTQ+ Sbjct: 388 VRNLLSNAVKFSPKGGKIVVSVRKEAQSVRVDVADSGCGISKVDCVRIFDKFTQV 442 >gi|66046584|ref|YP_236425.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63257291|gb|AAY38387.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 646 Score = 34.9 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74 I HD + + I SLELL + +L R S +A + + LAF Sbjct: 280 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQDASKRAASLTHRL--LAFSRR 337 Query: 75 GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 ++D IG+ + I + + I ++ V ID + LLNL + Sbjct: 338 QTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWSTFIDAPQLE-NALLNLCIN 396 Query: 126 AHASLPRGGKVTISVQD 142 A ++PRGG++TI + Sbjct: 397 ARDAMPRGGRITIETAN 413 >gi|116686340|ref|YP_839587.1| periplasmic sensor signal transduction histidine kinase [Burkholderia cenocepacia HI2424] gi|116652055|gb|ABK12694.1| periplasmic sensor signal transduction histidine kinase [Burkholderia cenocepacia HI2424] Length = 425 Score = 34.9 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 22/223 (9%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ + +L S I HD+ +PI + +LL + G + ++ S L F Sbjct: 206 LAVAERERAVMLAS-IAHDLRTPITRMQVRADLLTDRGDREGFLRDTESMSRVITQFLDF 264 Query: 67 MRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 R GS + D D D V + + + Sbjct: 265 AREI--PEGSPQISVDTHCRRDYTDALSPSGD-AHRDALVTLDLHAGPDFML-PAVDIDR 320 Query: 118 ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173 +L NL +L G V I+ + ++ +G P+ V + Sbjct: 321 MLSNLV---ENALTYGEPPVEIATRARGEHYELVVRDHGPGVSEPDLDRVLRPFVRLDPA 377 Query: 174 STIDSHD-IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 SH + V L + L D +V+ K Sbjct: 378 RGGTSHSGLGLAIVHRLVRHHGGTLHMSNAADGGLVIVMRFPK 420 >gi|330880810|gb|EGH14959.1| sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 177 Score = 34.9 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 7/113 (6%) Query: 55 LSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110 S+ A L F R G+VD + +E+++ + ++ V Sbjct: 39 SSANRAAALTQRLLTFARRQSLSVGTVDINCMVRSMEELLRGTVGNHAQLHVELEEGLGA 98 Query: 111 LSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 + + ++ LLNL + A ++P G + + + + G+ R Sbjct: 99 IQTDEHQLENALLNLVINARDAVPVAGLIRVRSHALRLVAQDGVLAAGDYVRL 151 >gi|269216463|ref|ZP_06160317.1| putative sensory transduction histidine kinase [Slackia exigua ATCC 700122] gi|269129992|gb|EEZ61074.1| putative sensory transduction histidine kinase [Slackia exigua ATCC 700122] Length = 528 Score = 34.9 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 15/159 (9%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71 L + + H++ +P+ AI +++E + + E + +L ++ S LK RL Sbjct: 278 LTTDVAHELRTPLMAIQSTVEAIVDGVFEPDAERLGTIDAEVQRLSRMVDALLKLSRLEN 337 Query: 72 GYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDL---SRERAK-ILLNLF 123 T + ++ +G++ +++ E +I+ +Q+ + E + R+ + NL Sbjct: 338 RTTPLNEEVVNVGEMIRLLAMSHEAYISEAG-LQLVYEAEDDVVVYADRDLIRQATANLI 396 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 A P G +T+SV+ S +E + +++ G E Sbjct: 397 SNAVRYTPAPGTITVSVKKSDDEAMIAVQDTGVGLTPEE 435 >gi|222087617|ref|YP_002546154.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221725065|gb|ACM28221.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 452 Score = 34.9 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 22/191 (11%) Query: 42 EVGIEDEVMQLIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAV 96 + DE +Q +R S+ A L R G I L +V+E+ Sbjct: 264 DNARRDEALQALRSSTKQVTRLASQLLTLSRAEPGSRRPRSDTIELAATARRVLENLAEE 323 Query: 97 DKRVQVSWTGEKIDLS------RERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149 R + E + +L+NL A P G+VT+ V ++ + Sbjct: 324 ALRHNIDLGLEAGSTPIHVEGDGMMLREMLVNLVDNALRYTPANGRVTVGVARDGDDAVL 383 Query: 150 SLKINGN------LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 +++ NG A+ E+F +I+ E + I V + + Sbjct: 384 TVEDNGPGIPESERAQVFERFYRIIGTEPEGSGLGLAI----VREVVDGAGGSVTLGDAA 439 Query: 204 DHNVVLSALLE 214 + ++++ L Sbjct: 440 EGGLLVTVRLP 450 >gi|221640765|ref|YP_002527027.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221161546|gb|ACM02526.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 887 Score = 34.9 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%) Query: 4 NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54 + +L L A LL S + HD+ +P+ I + L E G E Q + Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + R L RL G L ++ +A R T Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764 Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 DL ++L+N+ A P G +T++ + + S+ G Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824 Query: 161 PEK 163 ++ Sbjct: 825 ADR 827 >gi|90419214|ref|ZP_01227124.1| PAS sensor histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336151|gb|EAS49892.1| PAS sensor histidine kinase/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 671 Score = 34.9 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 15/190 (7%) Query: 22 ICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSMSAI--IRLKFMRLAFGY-TGS 76 I HD + + A+ SLE+ + VGI+ +Q LI + A L LAF Sbjct: 301 IAHDFNNLLTAVIGSLEMARKRVGIDPPAVQSLIDNALEGARRGASLTQRMLAFARRQDL 360 Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERAKILLNLFMVAHAS 129 + L ++ I F+ ++S + LLNL + A + Sbjct: 361 APRTVDLAELVAGITAFLERSIGPELSIETRFPAGLSPAHIDPNQLETALLNLMVNARDA 420 Query: 130 LPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188 + GG VTI ++ E G R +G T+ F+ Sbjct: 421 MDGGGVVTIEADEAAIEVARPGGLAVGRYVRL--AVIDTGEGMDAETVKRAAEPFFTTKG 478 Query: 189 LAHENKIRLL 198 + + L Sbjct: 479 VGKGTGLGLS 488 >gi|23501996|ref|NP_698123.1| nitrogen regulation protein NtrB [Brucella suis 1330] gi|256369545|ref|YP_003107055.1| nitrogen regulation protein NtrB [Brucella microti CCM 4915] gi|23347947|gb|AAN30038.1| nitrogen regulation protein NtrB [Brucella suis 1330] gi|255999707|gb|ACU48106.1| nitrogen regulation protein NtrB [Brucella microti CCM 4915] Length = 367 Score = 34.9 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72 L S + H+I +P+ I + +LL++ V ED + LI + S + R++ Sbjct: 126 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 180 Query: 73 YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120 S + I L ++ + + A R + + R ++ L Sbjct: 181 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 237 Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175 NL A ++ GG++ +S + L++ G R P +F +G V Sbjct: 238 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 294 Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210 + H + + L+ +II DH ++ Sbjct: 295 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 330 >gi|322417640|ref|YP_004196863.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124027|gb|ADW11587.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 498 Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV--MQLIRLSSMSAIIRLKF------ 66 +LL S I HD+ +P+ AI +L +L+E G + +L+ + A +F Sbjct: 274 SLLNS-ISHDLRTPLTAITGALSAVLEEGGKLNPAARAELLETAREEAARLNRFVGNLLD 332 Query: 67 -MRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKILLNL 122 RL G + D+ + + V V + + + +L L Sbjct: 333 MTRLEAGVLQLKREPCDVQDLVGCALNAVEQRLAGVEVSVRLPRDLPLVPLDFVLMLQVL 392 Query: 123 FMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176 + +L GG + I + + + G + F + V + Sbjct: 393 VNLLDNALKHGGAGGTIEIGARVAGERLALEVADRGPGVPAEDLNRIFEKFYRTPVPEVV 452 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + + + + + + + Sbjct: 453 GGTGLGLSICRGIVEAHGGSIRAQSREGKGLKIVVEMP 490 >gi|160901352|ref|YP_001566934.1| osmosensitive K+ channel signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160366936|gb|ABX38549.1| osmosensitive K+ channel signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 904 Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 17/216 (7%) Query: 1 MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60 +A+ + + L S + HD+ +P+ I + E ++ + A Sbjct: 665 VAQQTQIAMEGERMRNTLLSAVSHDLRTPLTTILGAAEAAQRHVPPGGAADMLEQVRIQA 724 Query: 61 II-------RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112 L RL G + L ++ + A + VS Sbjct: 725 QAMQRLVENLLDMARLQQGGVHLQREWLPLDEVVGSALRQMRARLGQHLVSTDVPASLPL 784 Query: 113 RERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + ++L+NL A P G + IS + E + S++ G + Sbjct: 785 LQLDALLMERVLVNLLDNAAKYTPAGTPLAISARVQDGELLLSVRDGGPGLPSHLPVETL 844 Query: 168 VD----GNVESTIDSHDIQFYYVILLAHENKIRLLP 199 + G EST+ + V + + R+ Sbjct: 845 FEPFTRGTAESTVSGIGLGLALVRSIVEAHGGRIEA 880 >gi|188580835|ref|YP_001924280.1| histidine kinase [Methylobacterium populi BJ001] gi|179344333|gb|ACB79745.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 541 Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 30/171 (17%) Query: 37 LELLDEVGIEDEVMQLIRLSSMSAI---IRLKFMRLAF--------------GYTGSVDS 79 L LL+ ++ M+ + +A +L LAF G S+ Sbjct: 190 LALLEHPSLDVARMRRAGEAVRAATDRAAKLTHQLLAFSRKQRLEGRLLNLNGLVESMGE 249 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 + G + +D + WT +ID ++ LLN+ + A ++P GG VT+ Sbjct: 250 MAG----RTLGDDIVLKSVLAPDLWT-TRIDPTQAEV-ALLNVLLNARDAMPDGGTVTVR 303 Query: 140 VQ----DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 + + ++ ++ G T + + S I S ++ ++ Sbjct: 304 TENLLIEDEDTALYKTVPPGAYVVISVTDTGL---GMPSEILSRVMEPFFT 351 >gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 1301 Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 69/196 (35%), Gaps = 23/196 (11%) Query: 41 DEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIE----- 91 ++ + +++ + + +A + L+ + +A G + D+ ++ Sbjct: 242 EDPTLAPAEKRVLDMVARNARLLLRHVNDLLDIAKLEAGQMRMQYVRTDVTRLCRFALSH 301 Query: 92 -DFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146 D +A ++ + + + + ++LLNL A P G++T+S+ D ++ Sbjct: 302 FDSLAEERAIAFTLEAPAVLWAEIDPEKFRRVLLNLLSNAFKFTPNQGEITVSLIDRGDD 361 Query: 147 NIFSLKINGNLARFPEKFT-------QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP 199 I + NG PE + VDG + + V + + Sbjct: 362 VILRVSDNGPG--IPESMWTAVFERFRQVDGGSDRRHGGTGLGLAIVREFVDLHGGEVSI 419 Query: 200 EIIDDHNVVLSALLEK 215 + + +L K Sbjct: 420 GQASEGGAAFTVVLPK 435 >gi|83312445|ref|YP_422709.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947286|dbj|BAE52150.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 280 Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 8/145 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +PI + E +D+ +++ + L F R + Sbjct: 81 ISHDLKTPITRLRLRAEFMDDDDQRAKMLSDLEEMEAMIASTLAFARD--DAASEPRLRL 138 Query: 82 GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138 L ++ ++ED + R + +R A + L N+ ++ GG + Sbjct: 139 DLAAMLQGMVEDLDDLGARCSYEGPQSLVLEARPAALKRALSNVI---DNAIKYGGSAAV 195 Query: 139 SVQDSKNENIFSLKINGNLARFPEK 163 +++ S E ++ G Sbjct: 196 ALETSGREARITIDDQGPGIPAEAH 220 >gi|85703304|ref|ZP_01034408.1| sensor histidine kinase [Roseovarius sp. 217] gi|85672232|gb|EAQ27089.1| sensor histidine kinase [Roseovarius sp. 217] Length = 428 Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 17/153 (11%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 L+ S + HD+ +P+ + L +LD +E ++R + F+ A G Sbjct: 225 TLMLSGVSHDLRTPLTRLRLGLAMLD----HEEAAPMLRDVVDMERLLDGFLAFARGAHE 280 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKIDLSRERAKILLNLFMVAHA 128 I D ++ + +R QV G + + NL + Sbjct: 281 GEAEPIDPID---LVRQIVEDSQRAQVPVALVETRGEGSIALRPANIRRAVENLI---NN 334 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 ++ G + +SV ++ ++ +G Sbjct: 335 AVRYGSRAEVSVVMTEKSLRIRVEDDGPGIPPD 367 >gi|239813974|ref|YP_002942884.1| histidine kinase [Variovorax paradoxus S110] gi|239800551|gb|ACS17618.1| histidine kinase [Variovorax paradoxus S110] Length = 475 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 21 RICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS----MSAIIRLKFMRLA 70 + H++ +P+ A+ + LL++ + EV Q++ ++ L+F A Sbjct: 259 HVSHELKTPLAALREGVSLLEDGVTGPLNPAQLEVAQILNQNTVSLQGQIEALLRFNAAA 318 Query: 71 FGY---TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127 F L+ L + + + ++V GE I L +RAK+ + + Sbjct: 319 FEARELRRERTDLLPLVEEQIEAQRLQWQAHGLRVHAEGESITLPVDRAKLGTAVANLLS 378 Query: 128 ASL---PRGGKVTISVQDSKNENIFSLK------INGNLARFPEKF 164 ++ RGG ++I V + + G+ R E F Sbjct: 379 NAIRYSARGGVISIVVSGTPTTACIDINDAGPGIAEGDRDRIFEPF 424 >gi|213970405|ref|ZP_03398534.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1] gi|301381188|ref|ZP_07229606.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato Max13] gi|302058545|ref|ZP_07250086.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato K40] gi|302132601|ref|ZP_07258591.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924876|gb|EEB58442.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1] Length = 423 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 13/152 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIR----LKFMRLAF 71 I HD + + + +L+++ G D + S+ A L F R Sbjct: 200 IAHDFNNMLSGVLGALDMIRMRIGAQRFGEVDRYVDAAVSSANRAAALTQRLLTFARRQS 259 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128 G+VD + +E+++ + ++ + + + ++ LLNL + A Sbjct: 260 LSVGTVDINCMVRSMEELLRGTVGNHAQLHIELEEGLSAIQTDEHQLENALLNLVINARD 319 Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 ++P G +++ Q + G+ R Sbjct: 320 AVPVAGLISVRSQALRLVAQEGALAAGDYVRL 351 >gi|254446376|ref|ZP_05059852.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260684|gb|EDY84992.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 527 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLKFMR 68 ++ A + R HD + I I++ EL E G + E M IR ++ A + +R Sbjct: 157 EIAATMTRRFLHDFNNTIAGIYSLSELYAEPGSDPKSTAEAMGHIRDCAVRAQDLTRKIR 216 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS 112 +S LG + + ++F+ K ++ + E + Sbjct: 217 YLTSLEAGQESYFDLGKLLEEQQEFMEALLPKGSEIHFQIEPGEHP 262 >gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1178 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTIS 139 + + E+++ I D + E + + ++L+NL + A ++P GG++T+ Sbjct: 897 VAEAERLLRRLIGEDIELTTVADPELAQVVADPGQAEQVLMNLVVNARDAMPTGGRLTVE 956 Query: 140 VQDSKNENI 148 + + + Sbjct: 957 TSNVERDGA 965 >gi|159899317|ref|YP_001545564.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159892356|gb|ABX05436.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 490 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 19/160 (11%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---IRLK-----FMRL 69 L + + H++ +P+ A+ +LE+L + + +L+ S RL + L Sbjct: 250 LTADVSHELRTPLAAMRGNLEVLRRGAMRNP--ELLNESLSDLEREVARLNRLVNDLLFL 307 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL-SRERAK-ILLN 121 A G + +++ +I + A ++Q+ + + R+R K +LN Sbjct: 308 AQTEAGVQMRSEPV-ELDTLILEVFRELRPLAEHVKLQIGSEDQATVIGDRDRLKQAMLN 366 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 L A P GG VT+S++ E ++ G Sbjct: 367 LAYNAIQHTPEGGAVTLSLERVGREVALRVQDTGEGIPPD 406 >gi|152989700|ref|YP_001347434.1| putative two-component sensor [Pseudomonas aeruginosa PA7] gi|150964858|gb|ABR86883.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 431 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 25/135 (18%) Query: 24 HDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSS---MSAIIRLKFMRLAFGYTGSVD 78 H++ +P+ I +LELLD+ G +Q IR S+ L ++ + Sbjct: 245 HELRTPLAVIGMNLELLDQPGHPPSPHALQRIRRSALDMRQMTETLLWL------SREGG 298 Query: 79 SLIGLGDIE--QVIEDFIAVD------KRVQVSWTGEKIDLSRERAKILL-NLFMVAHAS 129 L G IE +++ED + + + E L + RA+I++ NL + Sbjct: 299 ELRDDGHIEVGRLLEDLLEEQQTLSQRRGLSFQLDVEPHSLPQTRARIIIGNLL---RNA 355 Query: 130 LPRG--GKVTISVQD 142 L G V I V+D Sbjct: 356 LQYSDEGVVEIVVRD 370 >gi|78066345|ref|YP_369114.1| periplasmic sensor signal transduction histidine kinase [Burkholderia sp. 383] gi|77967090|gb|ABB08470.1| periplasmic sensor signal transduction histidine kinase [Burkholderia sp. 383] Length = 461 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 70/206 (33%), Gaps = 27/206 (13%) Query: 24 HDIISPIGAIHNSLEL------LDEVGIEDEVMQL-IRLSSMSAIIRLKFMRLAFGYTGS 76 H++ +P+ A+ E+ L + + + S+ + L+ RL G Sbjct: 241 HELRTPLAALSAQAEVALQADSLADKNDALRRLATGVERSARLSGQLLELARLDAGSRAD 300 Query: 77 VDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR- 132 + L + +I D A +R + E + + + +I + + + +L Sbjct: 301 QHGPVDLSRLVALIASDFDAAAHARRQTMRIAVEPVRVWGDLDEIAIAVRNLIDNALRYG 360 Query: 133 --GGKVTISVQDSKNENIFSLKIN----------GNLARFPEKFTQIVDGNVESTIDSHD 180 GG+V I+ + + +++ G R E+F ++ + Sbjct: 361 RDGGRVEITCDSPADADGGRVRLRIADDGPGVPLGERERIFERFYRVPGTVQPGS----G 416 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHN 206 I V +A + + + N Sbjct: 417 IGLSLVARIAESHGGSVEVAAGIEGN 442 >gi|77460155|ref|YP_349662.1| periplasmic sensor Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384158|gb|ABA75671.1| putative two-component system sensor histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 441 Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 13/153 (8%) Query: 24 HDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGYTGSV 77 H++ SP+ AI L++ + + D+ + + + L R+ + Sbjct: 235 HELRSPLTAIKTHLQVARMTDGSARDQSLARAEEGADRLHRTLEQLLLLARVEGSLSFDD 294 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------RAKILLNLFMVAHASL 130 + ++ A D+R ++ + + L NL A Sbjct: 295 GVQCSAEQVAKLAIQDSASDQRQRIRLHLPEHLSAAPLQMPAVLSIAALRNLLDNALRHT 354 Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 P G V +S++ S N F ++ +G + Sbjct: 355 PTDGAVDLSLETSANRVRFVVRDHGPGIAPDDL 387 >gi|312961364|ref|ZP_07775869.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285022|gb|EFQ63598.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 724 Score = 34.9 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 19/138 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75 I HD + + I SL+L+ ++ R S+ A + LAF Sbjct: 354 IAHDFNNMLTGIIGSLDLMQRYIAAGRSEEIGRFTDAAVSSAHRAAALTHRL-LAFSRRQ 412 Query: 76 SVD-SLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125 S+D + + +ED K + W E A LLNL + Sbjct: 413 SLDLRPLDPNQLVASLEDLFQRTKGAHIHLKVQLGQDIWPVNTDASQLENA--LLNLVIN 470 Query: 126 AHASLPRGGKVTISVQDS 143 A ++P GG++ I +S Sbjct: 471 ARDAMPDGGELLIETANS 488 >gi|325917156|ref|ZP_08179386.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536636|gb|EGD08402.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 763 Score = 34.9 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 17/133 (12%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFMRLAFGYTGS 76 + HD + + + +LEL+ + +L I S+ + L LAF Sbjct: 397 LAHDFNNLLAGVSGALELMTLRMEQQRFAELPRYLGIAQSATTRAAALTHRLLAF--ARR 454 Query: 77 VDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSR--ERAKI---LLNLFMVA 126 L D+ Q+I D + + +R + V +T + +++ LLNL + A Sbjct: 455 QTLLPKPTDVGQLIVDILELVQRTVGPGIHVDYTPNAALWPALVDASQLENALLNLCINA 514 Query: 127 HASLPRGGKVTIS 139 ++P GG++ I Sbjct: 515 RDAMPDGGRLHIE 527 >gi|153003901|ref|YP_001378226.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152027474|gb|ABS25242.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 557 Score = 34.9 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 19/211 (9%) Query: 24 HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAF-GYT 74 HD+ +P+GA+ LL D + I ++ L F F G Sbjct: 329 HDLRNPLGAVRALASLLLRRGDVPASAHASLGEIDRAARRMLEMIGTLLDFTDGRFKGAL 388 Query: 75 GSVDSLIGLGDIEQ-VIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 L ++ Q VI++ A D R V + G A+++ NL A Sbjct: 389 PIAPVPADLHEVCQDVIDELRAADPRRTIQVALEGDGRGTWDPARLAQVVSNLVANALEH 448 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDG-NVESTIDSH--DIQFY 184 RG V ++V+ + +++ G + P F G + + + Y Sbjct: 449 GVRGAPVRVTVRGDHQQVAVTVENQGAIPPELRPVLFEPFCSGSRLRDASHARGLGLGLY 508 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 V L+ + + E + + L + Sbjct: 509 IVDLVVRAHGGSVSFESTAERGTAFTVRLPR 539 >gi|209549360|ref|YP_002281277.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535116|gb|ACI55051.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 701 Score = 34.9 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 13/146 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + I A R + + + GS Sbjct: 492 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 550 Query: 81 IGLG-DIEQVIEDF-----IAVDKR--VQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129 D+ ++ IAV + +++ + +S + A + +LNL + A A+ Sbjct: 551 YPSPVDVGSLLRGMADILEIAVGAKCHIKLELDADLPVVSLDAALLEQSVLNLCLNASAA 610 Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155 +P GG + I + + S+ +G Sbjct: 611 MPLGGIIVIGATATTEILLISVTDSG 636 >gi|168698023|ref|ZP_02730300.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 969 Score = 34.9 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 53/122 (43%), Gaps = 9/122 (7%) Query: 37 LELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDIE----QVIE 91 L+ + + E + ++R + A + + + LAF + + L D+ +++ Sbjct: 625 LDEMPDGDPHRESVGMVRDAGKRAAVLTRQL-LAFSRKQVLQPTTLNLNDLLDGMSRMLA 683 Query: 92 DFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENI 148 I D + V E + + ++ ++NL + A ++P GG++TI + + Sbjct: 684 QLIGADVDLTVRGAPEPWPVRADAGQVEQVVMNLAVNARDAMPTGGRLTIETGNVTLDTG 743 Query: 149 FS 150 ++ Sbjct: 744 YT 745 >gi|90426018|ref|YP_534388.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90108032|gb|ABD90069.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 907 Score = 34.9 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFM----- 67 ALL S I HD+ +P+ A+ + L ++ + + +LI + +F+ Sbjct: 677 ALLTS-ISHDLKTPLAAVLGAASTLRDLSPKLSDAQRAELIGSIVEESERLNRFIANLLD 735 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119 RL G +L LGD+ I VQ+ E L + + + Sbjct: 736 MTRLEAGAVVPNAALHDLGDVVGSALRRAATILAHHNVQLDLEAELPMLQIDAVLFEQAI 795 Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 NL A P G +T+ + + + G + Sbjct: 796 FNLLDNAAKYAPLGTTITVRAARHGDAVLLQIIDEGEGIPPEDL 839 >gi|154245479|ref|YP_001416437.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159564|gb|ABS66780.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 469 Score = 34.9 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 11/133 (8%) Query: 42 EVGIEDEVMQLIRLS----SMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDF--I 94 + +E + ++ S + A L R G D I L V+E + Sbjct: 269 DAAEREEALSGVQESTRRLARLASQLLTLSRSEPGSRRPRDEEIDLSASARLVLEGLVDL 328 Query: 95 AVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150 A+++ + ++ + L+R + ++NL A P GG V +SV+ + + + Sbjct: 329 AIERGIDLALDADAPVLTRGDGAMTREAIVNLVENALRYTPAGGSVAVSVRAEDDWAVLA 388 Query: 151 LKINGNLARFPEK 163 ++ +G E+ Sbjct: 389 VEDSGPGIPPQER 401 >gi|94314246|ref|YP_587455.1| periplasmic sensor signal transduction histidine kinase [Cupriavidus metallidurans CH34] gi|93358098|gb|ABF12186.1| Periplasmic sensor signal transduction histidine kinase [Cupriavidus metallidurans CH34] Length = 480 Score = 34.9 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 71/201 (35%), Gaps = 25/201 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRL--AFGYT 74 H++ SP+ A+ E L+ + + + +R + L+ R A Sbjct: 240 HELRSPMTALSLQAERLERTEMPEAARTRLATLRRGIERSRALLEQLLSLARAQSATAAP 299 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRERAKILLNLFMVAHASL- 130 +S+ +V+ED + + + + + +++ L + ++ Sbjct: 300 APAESISVRHAFRRVLEDLMPLADSRHIDIGAVGDTDAQVPIQEVELITLLKNLVDNAIR 359 Query: 131 --PRGGKVTISVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVESTIDSHDIQ 182 P+ G+V +SV+ S N + +G +R + F +I + + I Sbjct: 360 YTPKHGRVDLSVETSPNAVAMIVTDSGPGISTEERSRIFDPFYRIPGNDAPGSGLGLSI- 418 Query: 183 FYYVILLAHENKIRLLPEIID 203 V ++A + + D Sbjct: 419 ---VRVIAERVGATVEIDYAD 436 >gi|124266107|ref|YP_001020111.1| signal transduction histidine kinase [Methylibium petroleiphilum PM1] gi|124258882|gb|ABM93876.1| signal transduction histidine kinase [Methylibium petroleiphilum PM1] Length = 343 Score = 34.9 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 18/225 (8%) Query: 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMS- 59 +L + L AL + + +CH+I +P+ ++H+ +++L + I ++ Sbjct: 117 DLQTARLAALGFMVAGVCHEITNPLTSLHSIVQILRSEKQPSPALLDKGFDNIAVNVKRI 176 Query: 60 ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRER 115 + +KF R+ + + V+ D + D +Q + + Sbjct: 177 LDISRRLVKFSRVGDEPRYGFAVDEAIEEALYVLRQDDLLRDVELQYLRRDAGLKVFGNT 236 Query: 116 AKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172 +I LNLF+ A ++ G + I +++ + G E +I + Sbjct: 237 GQIREIFLNLFVNAAQAMAGRGTLRIETREAGPMVEVLVGDTGPGV-PAEAVGRIFEPFF 295 Query: 173 ESTIDSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLSALLEK 215 + H I +AHE+ L L + Sbjct: 296 TTKSSMHGTGLGLAISTEIAHEHGGSLSLRHTGSEGATFCVALPR 340 >gi|94971993|ref|YP_594033.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94554044|gb|ABF43959.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 725 Score = 34.9 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 27/234 (11%) Query: 2 AKNICFNLSSMDLVALLCSRICHDIISPIGAIHN--SLE--LLDEVGIEDEVMQLIRLSS 57 K + + DL A S + HD+ +P+ I + L L+ + + +I S+ Sbjct: 497 EKQLQLEQVNRDLEAF-ASSVSHDLRAPVRHIASFAGLLRPLIADEPRARRYLDIIEQSA 555 Query: 58 MSAIIRLK----FMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112 ++ RL G + + L ++ +V + + + ++ W + + Sbjct: 556 GRMNTLIESMLTLSRL--GSGELQKTDVALAELVDEVQTELASEAEGRRIEWRVGDLPVV 613 Query: 113 RERA----KILLNLFMVAHA-SLPR-GGKVTISVQDSKNENIFSLKINGN------LARF 160 R A +++ NL A S PR + + + +++E ++ NG R Sbjct: 614 RGDATLLRQVIHNLLGNAVKYSRPRETAVIEVWAEAAEHEQQIHVRDNGVGFDPECAGRL 673 Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 E F ++ + H + V + + R+ + L Sbjct: 674 FEVFKRLHS---PEEFEGHGVGLASVQRIVTRHGGRVWAAGRPGEGATFTFTLP 724 >gi|241667026|ref|YP_002985110.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862483|gb|ACS60148.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 642 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 23/175 (13%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 I HD + + A+ SLE+L + +D + L+ + A L LAF + + Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLALTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-------------LLNLFMV 125 + D+ ++ + + R T + ++ +LNL + Sbjct: 347 LHMEPIDVSGLVRGMMDMLSRSLGPLTMIETSFP---VRLPTIVTDPNQLEMAILNLVVN 403 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178 A ++P GG++ + + + G R ++ + +E I Sbjct: 404 ARDAMPSGGRIVLRASEESLPSGKGPLSPGRYVRIAVIDEGEGMDAKTLEQAITP 458 >gi|158522748|ref|YP_001530618.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511574|gb|ABW68541.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 749 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 25/165 (15%) Query: 18 LCSRICHDIISPIGAIHNSLELL--------DEVGIED------EVMQLIRLSSMSAIIR 63 + RI H++ +P+ I S + L D+ E+ + + +IR Sbjct: 538 VARRIAHEVKNPLTPISLSAQRLKRKFGPDADDPIFEECIRTILDYVDIIRNLVNEFAAF 597 Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRERAK-I 118 KF + + + I + + + D V + L R++ K Sbjct: 598 AKF------PSAKLGPCDLVQTIRETADLYTEEDSPVTFTIDAPPDLPRLNLDRQQIKQA 651 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 L+NL A ++ G++TI+V+ L E Sbjct: 652 LINLIENAITAMEGAGRITITVRHDPAAMKVVLTFADTGRGLSEA 696 >gi|9857983|gb|AAG00949.1|AF273679_3 FixL [Rhizobium etli CFN 42] Length = 641 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78 + HD + + I +LE++++ + ++R + +A L LAFG Sbjct: 278 LAHDFNNLLTVISGNLEMIEDKLPPGSLRDILREAQAAAQDGAILTGQLLAFGRRQPLNP 337 Query: 79 SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131 LG + D + + +++S + DLS + +LN+ + A ++P Sbjct: 338 KHADLGQLVTGFADLLRRTLGEDIKLSTIIDGSDLSVLVDSSQLQNAILNIALNARDAMP 397 Query: 132 RGGKVTISVQ 141 +GG T ++ Sbjct: 398 KGGSATTTIS 407 >gi|34498561|ref|NP_902776.1| two-component sensor histidine kinase [Chromobacterium violaceum ATCC 12472] gi|34104416|gb|AAQ60774.1| probable two-component sensor histidine kinase [Chromobacterium violaceum ATCC 12472] Length = 485 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 8/146 (5%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 + HD+ PI + LE L+E + + + L ++R+ G +V + Sbjct: 279 VSHDLRLPITRVRLRLEQLEEGSARQAIERDLSEMDQLIGDTLAYLRMGQGNENAVLLNV 338 Query: 82 GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGK--VT 137 G +E VIED A+ V + +R +A + + NL + GG V Sbjct: 339 GAL-LEGVIEDIEALGAEVAYQAEPVRPLYARPQALRRAIANLL---ENARRYGGDGVVE 394 Query: 138 ISVQDSKNENIFSLKINGNLARFPEK 163 +++++ +++ +G + Sbjct: 395 VALRERAGRIEITVRDHGPGIAEADL 420 >gi|271962010|ref|YP_003336206.1| osmosensitive K+ channel signal transduction histidine kinase [Streptosporangium roseum DSM 43021] gi|270505185|gb|ACZ83463.1| osmosensitive K+ channel signal transduction histidine kinase [Streptosporangium roseum DSM 43021] Length = 851 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 18/216 (8%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA-------IIRLK 65 ALL + + HD+ +P+ + ++E L IE ++ +L+ + S L Sbjct: 623 ALLAA-VSHDLRTPLASARLAVESLRGTEIEWSAEDREELLATADESLVKLDRLVANLLD 681 Query: 66 FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121 RL G G + L + I + I+D + RV+ + + ++ + +IL+N Sbjct: 682 MSRLQAGVLGLALQPVALEEVIPRSIDDLGPLRDRVEGDVSVDLPEVVADPVLLERILVN 741 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD- 180 + A P G K ++ + + G + D+H Sbjct: 742 VMSNAVRYSPAGRKALVAGSRHGDYVEIRVVDRGPGIPAEAHDRVFMPFQRLGDRDNHTG 801 Query: 181 --IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + LA L PE + + L Sbjct: 802 VGLGLALSRGLAEAMGGTLTPEETPGGGLTMILTLP 837 >gi|152985251|ref|YP_001346379.1| two-component sensor [Pseudomonas aeruginosa PA7] gi|150960409|gb|ABR82434.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 434 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 21/157 (13%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQ-LIRLSSMSAIIRLKFMRL 69 LL + I HD+ +PI + +E +D D E MQ L+R + R Sbjct: 232 LLAA-ISHDLQTPITRMKLRVEFMDASSDRDKLWNDLEEMQHLVREGVA-------YARS 283 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127 G + + ++ ++ D+ K+VQ+ + +R A ++L+NL Sbjct: 284 MHGSAEASCRVDLDAFLDSLVFDYQDSGKQVQLDGRTAAVIDTRPHALRRVLVNLI---D 340 Query: 128 ASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163 +L G + V+ + + NG E Sbjct: 341 NALKFAGAARLEVERRADGGTRIQVLDNGPGIPPGEL 377 >gi|86158662|ref|YP_465447.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775173|gb|ABC82010.1| periplasmic sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 461 Score = 34.9 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 2/118 (1%) Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNL 157 R+ R + LLNL A + P GG+V + ++ S +E ++ G Sbjct: 331 RLYARGDASLEADPRRLKEALLNLVANAIEATPAGGEVVVEARELSGDEVELVVRDTGRG 390 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + D + + ++ L E + L + Sbjct: 391 M-PPETLRRIGTPFFTTRDDGTGLGVVLARAVIVQHGGTLRYESEPGSGTKVLVTLPR 447 >gi|189426202|ref|YP_001953379.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189422461|gb|ACD96859.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 366 Score = 34.9 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 36/234 (15%) Query: 8 NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---------------EVGIEDEVMQL 52 +L S+ L S + H + +P+ ++ LE L+ V + +++ L Sbjct: 136 SLDSLKGAFL--SLVSHKLKTPLTSLSLGLEELERYASRLHPTEACHLRLVSMREDLEAL 193 Query: 53 IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE---K 108 M++++R+ A G G + L + ++ E V + ++ E Sbjct: 194 --SCLMTSLVRMH---QALGGAGGEPARFDLTEVVKSAAESVQRVSSKRNMTLLLELETS 248 Query: 109 IDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKING------NLAR 159 + R +++ L + + G V I + + +++ +G + + Sbjct: 249 AAVLGNRDRLMFALQQILENAFKFSSDGATVAIRLTRAGGHAEIAIRDSGCGIAEEEMPK 308 Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213 E+F Q+ D + I + + V + ++ + ++ L Sbjct: 309 IFERFYQV-DPDATGQIPGFGLGLFCVREIVRQHGGSIAVNSQLGQGTTVTINL 361 >gi|107028344|ref|YP_625439.1| periplasmic sensor signal transduction histidine kinase [Burkholderia cenocepacia AU 1054] gi|105897508|gb|ABF80466.1| periplasmic sensor signal transduction histidine kinase [Burkholderia cenocepacia AU 1054] Length = 425 Score = 34.9 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 22/223 (9%) Query: 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 ++ + +L S I HD+ +PI + +LL + G + ++ S L F Sbjct: 206 LAVAERERAVMLAS-IAHDLRTPITRMQVRADLLTDRGDREGFLRDTESMSRVITQFLDF 264 Query: 67 MRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117 R GS + D D D V + + + Sbjct: 265 AREI--PEGSPQISVDTHCRRDYTDALSPSGD-AHRDALVTLDLHAGPDFML-PAVDIDR 320 Query: 118 ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173 +L NL +L G V I+ + ++ +G P+ V + Sbjct: 321 MLSNLV---ENALTYGEPPVEIATRARGEHYELVVRDHGPGVSEPDLDRVLRPFVRLDPA 377 Query: 174 STIDSHD-IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 SH + V L + L D +V+ K Sbjct: 378 RGGTSHSGLGLAIVHRLVRHHGGTLHMSNAADGGLVIVMRFPK 420 >gi|332185667|ref|ZP_08387414.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Sphingomonas sp. S17] gi|332014025|gb|EGI56083.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Sphingomonas sp. S17] Length = 440 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 20/149 (13%) Query: 77 VDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRERAKILLNLFMVAH 127 I L D+ + +AV G D R +IL+NL A Sbjct: 291 ASMPIDLADVTRRAAGLLAVRAEAAGVAIRRPGPSEGMGATGDFGRS-LQILINLIGNAL 349 Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDI 181 PRGG+V ++V+ + + G + AR EKF ++ S + + Sbjct: 350 RYSPRGGEVVVTVEREDGWALTRVSDRGKGIEPEDQARIFEKFERV----DPSEPGGNGL 405 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 Y LA L E I + Sbjct: 406 GLYIARRLARAMGGDLSVESIPGEGATFT 434 >gi|220916811|ref|YP_002492115.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954665|gb|ACL65049.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 462 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 2/118 (1%) Query: 99 RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNL 157 R+ R + LLNL A + P GG+V + ++ S ++ ++ G Sbjct: 332 RLYARGDASLEADPRRLKEALLNLVANAIEATPAGGEVVVEARELSGDDIELVVRDTGRG 391 Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 PE +I + D + + ++ L E + L + Sbjct: 392 M-PPETLRRIGTPFFTTRDDGTGLGVVLARAVIVQHGGTLRYESEPGSGTKVLVTLPR 448 >gi|219849406|ref|YP_002463839.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543665|gb|ACL25403.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 794 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 18/138 (13%) Query: 41 DEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 D+V +++E ++++ + L F R S L L ++ + + + Sbjct: 461 DDVEMKNEALKVVLDTCKRGRSITGSLLTFAR----RRDSRRELSDLREVVEGTLTLMEI 516 Query: 97 DKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENI 148 D R Q+ I + + +++ LNL A ++ P+GG +T++++ + Sbjct: 517 DLRKHSVRVVRQIEMVPPTICDAGQISQVFLNLLTNARDAMKPKGGTLTVTLKAEGEWIM 576 Query: 149 FSLKINGNLARFPEKFTQ 166 + G PE + Sbjct: 577 LQVADTGCG--IPEAIRR 592 >gi|295676500|ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295436343|gb|ADG15513.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 657 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 83/210 (39%), Gaps = 25/210 (11%) Query: 22 ICHDI---ISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRL-----KFMRLAFG 72 + H++ ++P+ A + LE++ E+ + +++IR + RL R+A G Sbjct: 298 LSHELRTPLTPVLAGASVLEMIPELPEQARASVRMIRRNVE-LEARLIDDLLDLTRVANG 356 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKI---LLNLFM 124 + + ++ + + + +V+ V + +RA++ L NL Sbjct: 357 KLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVDKRATHHYVLADRARLQQMLWNLIR 416 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184 A P GG + + +D + + S++ G PE+ ++ + E S QF Sbjct: 417 NAAKFTPDGGHIYVRTRDERMQVQISVEDTGIGI-EPEQIGKLFN-AFEQGDQSMTRQFG 474 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + + + D H ++A Sbjct: 475 GLGL-----GLAITKALTDVHGGTVTAQSP 499 >gi|187920085|ref|YP_001889116.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] gi|187718523|gb|ACD19746.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] Length = 375 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 28/222 (12%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67 +L + + HD+ +P+GA+ S E L DE + ++ +R L Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYL-MRTAADEQSATVAARVKNSSLRMARMVDQLLNLA 206 Query: 68 RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125 RL G I L + VI++F + + Q+ + ++ + Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKQIVFASRGNTSGAWDTDLVWQAVSNL 266 Query: 126 AHASLPR---GGKVTISVQDSKNEN---IFSLKINGNLARFPEKFTQI----VDGNVES- 174 +L GG + + V E+ + + FP F G Sbjct: 267 VSNALHHGAPGGDIGVEVDGEAVESVRLKVANRGTIPAEVFPHLFKAFGPNNSGGRSREG 326 Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + H +Q +A + + + V + L + Sbjct: 327 LGLGLHIVQ-----EIARMHGGNVSVNSDEAVGTVFTIELPR 363 >gi|108757728|ref|YP_632419.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108461608|gb|ABF86793.1| sensor histidine kinase / response regulator [Myxococcus xanthus DK 1622] Length = 368 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 28/170 (16%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIED----EVMQLIRLSSMSA- 60 L A+ + + + H+I +P+ A L +L+ + E + L+R Sbjct: 145 KLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRLRRLPDGQQAPLLEPLLLVRDEIRRLD 204 Query: 61 ---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRE 114 L+F R + + + ++ + + D + A ++V + T + + Sbjct: 205 HILEDFLQFAR----PREFRPASVDVNEMLRRVVDLLSGQAASRKVSLEVTPREAPVPSV 260 Query: 115 RA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158 ++L+NL + A + P GG VT+S ++ +G Sbjct: 261 AGEEERLRQVLINLCLNALEATPAGGTVTLSAGHEGGRVWLTVDDSGPGV 310 >gi|77464844|ref|YP_354348.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389262|gb|ABA80447.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 887 Score = 34.9 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%) Query: 4 NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54 + +L L A LL S + HD+ +P+ I + L E G E Q + Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + R L RL G L ++ +A R T Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764 Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 DL ++L+N+ A P G +T++ + + S+ G Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824 Query: 161 PEK 163 ++ Sbjct: 825 ADR 827 >gi|332559742|ref|ZP_08414064.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodobacter sphaeroides WS8N] gi|332277454|gb|EGJ22769.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodobacter sphaeroides WS8N] Length = 887 Score = 34.9 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%) Query: 4 NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54 + +L L A LL S + HD+ +P+ I + L E G E Q + Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + R L RL G L ++ +A R T Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764 Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 DL ++L+N+ A P G +T++ + + S+ G Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824 Query: 161 PEK 163 ++ Sbjct: 825 ADR 827 >gi|170743274|ref|YP_001771929.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197548|gb|ACA19495.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 688 Score = 34.9 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 20/142 (14%) Query: 24 HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74 HD + + A+ SLELL+ +D +L+ + A L F R Sbjct: 334 HDFNNLLMAVLGSLELLEKRLDPQDDLARRLLGNAVQGAQRGAALTQRLLAFAR----RQ 389 Query: 75 GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKI-LLNLFMVAH 127 + + D+ + + + V+ + + + ++ LLNL + A Sbjct: 390 ELRPETVAVADLVEGMRGLLERALGPSVALETRLPADLPPVRIDANQFELALLNLAVNAR 449 Query: 128 ASLPRGGKVTISVQDSKNENIF 149 ++P GG +T+ Sbjct: 450 DAMPTGGTITLEGGSVAAAPGL 471 >gi|77465250|ref|YP_354753.1| periplasmic sensor signal transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389668|gb|ABA80852.1| periplasmic sensor signal transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 464 Score = 34.9 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 21/229 (9%) Query: 1 MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL 55 +A + L ++L + S + HD+ +PI + SLE L+ + ++ I Sbjct: 228 IAGAVNATLDQLELTVESLRQVSSDVAHDLRTPITRLRTSLEPLMLREDLPEDAAADIAS 287 Query: 56 SSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWT 105 + A ++ R+A G D+ ++ +D +A + ++ Sbjct: 288 AVGQADRIVRIFNAVLRIAQIEGGGARPRFARLDLGRLADDLHELLEPVAEEMGHRIDAR 347 Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 E + + +R A+ + NL A P V ++V+ E + +++ +G E Sbjct: 348 IEPVAVEGDRDLLAQAISNLVENAFRHCPPPAHVALTVRREGAEAVVTVEDDGPGIPAAE 407 Query: 163 K---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208 + F + + + V +A + R+ + V Sbjct: 408 REAVFRRFYRLERSRNSEGSGLGLSLVAAVARLHGGRVELHDAEPGLRV 456 >gi|320353194|ref|YP_004194533.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121696|gb|ADW17242.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 654 Score = 34.9 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 12/161 (7%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71 +D ++++ S I HD + + I+ +LE+ V ++ V QL+ S+ + + + +R Sbjct: 286 LDAMSMMASGIAHDFNNLLTIINGNLEMARYVSRDENVSQLLGESAKALNLTAQLIRQFT 345 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDL---SRERAKILLNLF 123 ++ + + ++IE+ +A D R Q+ E++ L ++ +NL Sbjct: 346 TFSDNYLPQKSQVQLRRLIEEVLARDLAPVGIRYQIRADEEELALTLDPDLVRQVFVNLA 405 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKIN----GNLARF 160 A ++ G+V + ++ + + G LAR Sbjct: 406 KNAVDAMGTSGRVEVCIERVDGSDEAARTGQPVPSGELARI 446 >gi|116255237|ref|YP_771070.1| putative two component fused sensor/regulator transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259885|emb|CAK02979.1| putative two component fused sensor/regulator transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 642 Score = 34.9 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 47/228 (20%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78 I HD + + A+ SLE+L + +D + L+ + A L LAF + + Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346 Query: 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-------------LLNLFMV 125 + D+ ++ + + R T + ++ +LNL + Sbjct: 347 LHVEPIDVSGLVRGMMDMLSRSLGPLTAIETSFP---VRLPTILTDPNQLEMAILNLVVN 403 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----HDI 181 A ++P GG++ + + +G + P ++ +I + +D+ I Sbjct: 404 ARDAMPSGGRIVLRASEESLP-------SGKIPLPPGRYVRIAVIDEGEGMDAKTLEQAI 456 Query: 182 QFYYVIL---------------LAHENKIRLLPEIIDDHNVVLSALLE 214 ++ LA ++ RL+ + + Sbjct: 457 TPFFTTKGVGKGTGLGLSMVQGLASQSGGRLMMKSSLGEGTTVELWFP 504 >gi|114799948|ref|YP_760029.1| sensor histidine kinase [Hyphomonas neptunium ATCC 15444] gi|114740122|gb|ABI78247.1| sensor histidine kinase [Hyphomonas neptunium ATCC 15444] Length = 517 Score = 34.9 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 22/179 (12%) Query: 22 ICHDIISPIGAIHNSLEL-----LDEVGIED---EVMQLIRLSSMSAIIRLKFMRLAFGY 73 I HD+ SP+ + N LEL L E + + + + L+ RL G Sbjct: 301 IAHDLRSPLTRLRNRLELALSKPLSEEAANETLGTTLSEVDRVLDTFNAILRLARLDAGS 360 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------KILLNLFM 124 G++ + G E++ E F + +++ + ++R + L NL Sbjct: 361 EGTLARMDLSGLAEELAELFDPACEEASLTFKSQ---IARNLVILGDKDLIGQALANLLD 417 Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183 A P GG ++ + + L + + PE+ V +DS Q Sbjct: 418 NAVKYTPAGGAISFTASRTPEGM-IDLTVIDSGPGIPEEARDKVIERF-HRLDSARTQP 474 >gi|187928036|ref|YP_001898523.1| multi-sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gi|187724926|gb|ACD26091.1| multi-sensor signal transduction histidine kinase [Ralstonia pickettii 12J] Length = 777 Score = 34.9 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 19/212 (8%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLSSMS---AIIRLKFMR-----L 69 I HD+ SP AI +EL + + L+ +LSS + A + R L Sbjct: 560 ISHDMRSPQSAILALIELQRDASRALDREVLLFRIEQLSSRTLELADAFIDLARAESQTL 619 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129 V ++ D + + V+ RV R + L+NL A Sbjct: 620 KLVDVDLVGLVLDAADEVWPLANRHQVEVRVVADIEAAVRGEPRLLVRALVNLLNNAIKF 679 Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183 G VT+SV+ + ++ G + R + F ++ +G + + Sbjct: 680 SAAGSMVTVSVEQDEAMFSVAVADQGAGIALADQPRLFQPFHRLHEGA-ANAPSGSGLGL 738 Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 +V + + R+ + + L + Sbjct: 739 VFVKTVVDRHGGRIAVQSAPGLGSTFTLWLPR 770 >gi|126463686|ref|YP_001044800.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126105350|gb|ABN78028.1| osmosensitive K+ channel signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 887 Score = 34.9 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%) Query: 4 NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54 + +L L A LL S + HD+ +P+ I + L E G E Q + Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704 Query: 55 LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106 + R L RL G L ++ +A R T Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764 Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160 DL ++L+N+ A P G +T++ + + S+ G Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824 Query: 161 PEK 163 ++ Sbjct: 825 ADR 827 >gi|239906645|ref|YP_002953386.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796511|dbj|BAH75500.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1136 Score = 34.9 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 23/158 (14%) Query: 22 ICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAF 71 I HD + + +I NS E L+D + L R + A R L F R + Sbjct: 771 IAHDFNNILTSIINSTELALMDMAPDDPMEDDLRR--VLKAGERGSRLVKQILSFTRPS- 827 Query: 72 GYTGSVDSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126 G + + + +I + + ++ V + + ++ ++NL A Sbjct: 828 -QAGFAPINVADVVNEAAGLIRASLPRNIKIVVETPDAPVACRADPTQLHQIVMNLCTNA 886 Query: 127 HASL-PRGGKVTISVQD---SKNENIFSLKINGNLARF 160 ++ P GG + + + + +++ G AR Sbjct: 887 FQAMRPTGGVLALRLTEDSLDEDQAGQVGTRAGRCARI 924 >gi|94985015|ref|YP_604379.1| histidine kinase [Deinococcus geothermalis DSM 11300] gi|94555296|gb|ABF45210.1| histidine kinase [Deinococcus geothermalis DSM 11300] Length = 388 Score = 34.9 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 31/217 (14%) Query: 24 HDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75 HD+ +PI A+ LE+++E + D++ LI+++ L ++ G Sbjct: 162 HDLKNPIAAVMGLLEVVEEDHRVPDDLRDLIKVAHDETQHLLHLAVNMLDVRKIQAGKMR 221 Query: 76 SVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVA 126 L+ ++ + + R + +LS RA ++L NL A Sbjct: 222 LRPELVFSPMFEEVIEQARGDVGSGLRDRHVRVEVAPNLSPSRADPEILRRVLANLISNA 281 Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI------VDGNVESTID 177 GG + + V + E ++ +G P F + G ++ + Sbjct: 282 MKHTVTGGLIQVRVWQGEGETYVQVRDDGEGIPAEDLPHLFAAFEQSRLTLHGRFDTGMG 341 Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L E+ R+ E + L Sbjct: 342 -----LAFCKLAVEEHGGRIWAESERGKGATFTFTLP 373 >gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 466 Score = 34.5 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 19/173 (10%) Query: 24 HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGSV 77 H++ +P+ AI +L+LL G+ E + S RL + LA G V Sbjct: 256 HELRAPLTAILGNLDLLRRRPGLPPEEQARALEEARSEAERLSRLVADLLSLARADAG-V 314 Query: 78 DSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKILLNLFMVAHASL-- 130 +I D++ V+ + +R+ V E + + +R +I L ++ ++ Sbjct: 315 PLVIKPFDVDAVVLEAFQEARRLARGQELVLDPLEPVHVPGDRDRIKQLLLILLDNAIKY 374 Query: 131 -PRGGKVTISVQDSKNENIFSLKIN----GNLARFPEKFTQIVDGNVESTIDS 178 P GG++T+ ++ + + + A P F + + + D Sbjct: 375 TPAGGRITLGLRGAGDGGAILTVADTGVGIPPADLPHVFERFYRADPARSRDP 427 >gi|116626468|ref|YP_828624.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229630|gb|ABJ88339.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 611 Score = 34.5 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 18/181 (9%) Query: 2 AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-DEVMQLI 53 + I L + D L A+ + S + H++ +P+ AI +E+ L + M++I Sbjct: 381 QRKINRELQTADRLSAISRISSGVAHEVKNPLNAILLHVEVARGKLSHGNTDVAPQMEII 440 Query: 54 RLSS----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK 108 L F R +V + +I ++ A V V E Sbjct: 441 AREILRLDRVVRTFLDFTRPVELKLATVSMRELVQEIVELARPQAAAAGIGVTVRDEAEG 500 Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165 +D+ +R + +LN+ + ++P GG++ +N + G PE Sbjct: 501 VDVRVDRDLFKQAVLNIVVNGMQAMPEGGELRFEATAGENGTELRISDTGTG--IPEALR 558 Query: 166 Q 166 + Sbjct: 559 E 559 >gi|328949556|ref|YP_004366891.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] gi|328449880|gb|AEB10781.1| integral membrane sensor signal transduction histidine kinase [Marinithermus hydrothermalis DSM 14884] Length = 373 Score = 34.5 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 18/214 (8%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL-AFGYT 74 L + I H++ +P+ + + LE L + + E ++ + + +RL + Sbjct: 149 LVADIAHELRTPLTVLKSELEALADGLLSPDPETLERLVEEVDLLARLVGDLRLLSLAEA 208 Query: 75 GSVD---SLIGLGD-IEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125 G ++ + L D + +V E F A K V++ T + + + ++ LLNL Sbjct: 209 GGLELAREDVPLRDLVRRVAEGFAPRAAAKGVRLVVTAAPVTVHADPGRLRQVLLNLLDN 268 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNV--ESTIDSHD 180 A P GG + + V ++ + + G P F + + Sbjct: 269 ALRHTPAGGCIAVGVH-AEGAAVLEVADTGPGIPEAHRPHVFERFYRPDPARSRAFGGSG 327 Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 I V L + R+ + V L Sbjct: 328 IGLAIVKALVEAHGGRVEAMNRPEGGAVFRVRLP 361 >gi|207723119|ref|YP_002253519.1| putative two component transmembrane sensor kinase (partial sequence towards c terminus) protein [Ralstonia solanacearum IPO1609] gi|206588312|emb|CAQ19005.1| putative two component transmembrane sensor kinase (partial sequence towards c terminus) protein [Ralstonia solanacearum IPO1609] Length = 625 Score = 34.5 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 13/144 (9%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81 I HD+ +P+ + E+L + I S ++ LA+ +G ++ Sbjct: 422 IAHDLKTPLSRLRLRAEMLADPKAGAG----IERDVASMSAIVEQF-LAYAQSGDGEARD 476 Query: 82 GLGD--IEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVT 137 D + +++ F + V + + +I++NL + G + Sbjct: 477 VTVDRHLRGLVQPFTEQGRHVALDLRAGDRFRLKPTHLERIVVNLL---DNAFAYGAE-P 532 Query: 138 ISVQDSKNENIFSLKINGNLARFP 161 + + + +E F+L + + A P Sbjct: 533 VRLATAADERGFTLTVEDHGAGIP 556 >gi|303248425|ref|ZP_07334685.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490223|gb|EFL50141.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 314 Score = 34.5 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 29/232 (12%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAI 61 L S L ++ L S I H+I +P+ I L+L E + + + R S Sbjct: 85 LQSQKLASIGELSSGIAHEINNPLAIITQELDLARELLAGGPCLAETDLDDARDSLREIA 144 Query: 62 IRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKI 109 ++ R L F +D ++ +++VIED A + V + Sbjct: 145 SQVDRCRQITHKLLNF--ARKMDPVLQEEALDRVIEDMAILVEREARGRDVAIVRDYASD 202 Query: 110 DLS-RERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164 R +++LNL A + P+GG +T+S + + +++ G+ P Sbjct: 203 LPPVRTDVPLLRQVILNLLTNALHATPKGGAITLSTRRKGKWAVIAVRDTGSGIS-PANM 261 Query: 165 TQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214 +I D + + + L + L Sbjct: 262 EKIFDPFFTTKQPGQGTGLGLSLSHGIVARLGGTLAAVSPPGEGATFTVTLP 313 >gi|219849579|ref|YP_002464012.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543838|gb|ACL25576.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 469 Score = 34.5 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 80/218 (36%), Gaps = 23/218 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS--MSAIIRLKFMRLAFG 72 L + I H++ +P+ I LE + + ++++ L+ + I L LA Sbjct: 230 LTADIAHELRTPLSIIKGRLEGIQDGVYEADDEQIEALLAEVALLERLINDLHL--LALA 287 Query: 73 YTGS----VDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDL-----SRERAKILLN 121 G +++ + + + I F A +++V ++ T + A++L N Sbjct: 288 DAGQLPLYRETVSPVMLVNEAIRSFTQSATERKVALTTTIPSDLPDVDVDPQRIAQVLGN 347 Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV--DGNVESTI 176 L A P GG++ ++V + F ++ G + A P F + D + + Sbjct: 348 LISNALRHTPPGGEINLAVTADADNVTFHVRDTGSGIDSADLPHIFDRFYRSDRSRTRSS 407 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + L + ++ H +S + Sbjct: 408 GGAGLGLAIARRLVEAHGGQIWATSQLGHGTTVSFRVP 445 >gi|91778879|ref|YP_554087.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia xenovorans LB400] gi|91691539|gb|ABE34737.1| response regulator receiver sensor signal transduction histidine kinase [Burkholderia xenovorans LB400] Length = 375 Score = 34.5 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 76/218 (34%), Gaps = 20/218 (9%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67 +L + + HD+ +P+GA+ S E L +++ + + ++ +R L Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADEQSVT-VAARVKNSSLRMARMVDQLLNLA 206 Query: 68 RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125 RL G I L + VI++F + + Q+ + ++ + Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKQIVFASRGNTTGAWDTDLVWQAVSNL 266 Query: 126 AHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD-- 180 +L GG + + V D + + LK+ PE F + + + Sbjct: 267 VSNALHHGAPGGDIGVEV-DGEAVDSVRLKVANRGTIPPEVFPHLFKAFGPNNSGARSRE 325 Query: 181 ---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 + + V +A + + + V + L + Sbjct: 326 GLGLGLHIVQEIARMHGGSVGVHSEEATGTVFTIELPR 363 >gi|163847015|ref|YP_001635059.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524838|ref|YP_002569309.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668304|gb|ABY34670.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448717|gb|ACM52983.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 796 Score = 34.5 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%) Query: 41 DEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96 D+V +++E ++++ + L F R S L L ++ + + Sbjct: 461 DDVEMKNEALKVVLDTCKRGRSITGSLLTFAR----RRDSRRELSDLREVVDGTLTLMEI 516 Query: 97 DKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENI 148 + R Q+ I S + +++ LNL A ++ P+GG +T+S+ Sbjct: 517 ELRKHNIRVVRQIDMVPPTICDSGQISQVFLNLLTNARDAMKPQGGTLTVSLTSDNEWIT 576 Query: 149 FSLKING 155 + G Sbjct: 577 LQVTDTG 583 >gi|325001103|ref|ZP_08122215.1| two-component system sensor kinase [Pseudonocardia sp. P1] Length = 851 Score = 34.5 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 15/213 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRLKFM-- 67 ALL + + HD+ +P+ +I ++ L + G E++ + S+ + + Sbjct: 632 ALLSA-VGHDLRTPLTSIKAAVGSLRDPGLRLPDDDRAELLATVEESADRLSNLVDNLLD 690 Query: 68 --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125 RLA G + + +G ++ + V V+ + D+ + + + V Sbjct: 691 SSRLAAGAVTPLLAPVGYDEVVATALIGLDGAGDVTVAVAEDVPDVVADSGLLERVIANV 750 Query: 126 AHASLPRGGK-VTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDI 181 +L GG+ VT+ + + G R + F + Sbjct: 751 IDNALRHGGRGVTVRASAHSDRVELRVVDRGPGVPRRRMGDLFAAFQRLGDRDATSGLGL 810 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 L L E + + L Sbjct: 811 GLSVAQGLTTAMGGTLTVEDTPGGGLTVVVSLP 843 >gi|254562007|ref|YP_003069102.1| sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens DM4] gi|254269285|emb|CAX25251.1| putative sensor hybrid histidine kinase with two PAS and two response regulator receiver domains [Methylobacterium extorquens DM4] Length = 622 Score = 34.5 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 38/224 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + AI SLEL+ + ++ + ++ A R L F R Sbjct: 269 IAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNATGAAQRGSALTKRLLSFSR----- 323 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK------ILLNL 122 S D+ D +IE A+ V V E D+ +LNL Sbjct: 324 --SNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEP-DMPFALVDPDQLELAVLNL 380 Query: 123 FMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGNLARFPEKFTQIVDGNVE 173 + A ++P GG VTIS + ++ + PE ++ + Sbjct: 381 CINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTGIPPEILERVCEPFFT 440 Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ LA + RL + L + Sbjct: 441 TKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|171060406|ref|YP_001792755.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170777851|gb|ACB35990.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 675 Score = 34.5 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 21/218 (9%) Query: 9 LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSA 60 L S L A L + I H++ +PI I +L++L ++LI Sbjct: 443 LRSEKLAAVGQLTASIAHEVNNPIAVIQGNLDVLRSQLPAATAATVHTELRLIDEQIERM 502 Query: 61 ----IIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGE---KID 110 L+F + A + + + V+ + R+ V + Sbjct: 503 RLIVTQLLQFAKPA--EYAGYIAPVDTARVLDDCLVLVGHLLARTRITVQRDFTATRQPG 560 Query: 111 LSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 ++R + +L+NL + A ++P GG + ++ +D + +++ + E Q+ Sbjct: 561 INRNELQQVLVNLLVNAIHAMPEGGALGLATRDVEPDSVAISVTDSGAGLDVELMDQLFQ 620 Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207 V D + + L L D + Sbjct: 621 PFVTRKKDGTGLGLWISRSLVERYGGDLRAANRSDGVI 658 >gi|156743808|ref|YP_001433937.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235136|gb|ABU59919.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 882 Score = 34.5 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 15/160 (9%) Query: 17 LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAF 71 LL + HD + + AI +L+L L + Q IR + +A + + + A Sbjct: 495 LLAGGVAHDFNNLLMAIMGNLDLALLALPKTSTAFQHIRNAMLATRHAAGLTQQLLAYA- 553 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFM 124 G G + + L I + D + V ++ ++ + + +++LNL + Sbjct: 554 GRGGDRRTDVDLTRIVAGMADMLRVSVGRQTRLELHLDPYLPVFQADPSQIQQVVLNLIL 613 Query: 125 VAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 A +LP GG +++ + + L N R Sbjct: 614 NAADALPAHGGIISVR-TGMRFCDEALLAANRTNERLSPG 652 >gi|331012711|gb|EGH92767.1| sensory box sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 797 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 25/86 (29%) Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LLNL + A ++P GG++TI + I G++AR ++ Sbjct: 542 ALLNLCINARDAMPDGGRITIEADNQ--------WIEGDVARMH---------DMPEG-- 582 Query: 178 SHDIQFYYVILLAHENKIRLLPEIID 203 +Y+ L + + P++I Sbjct: 583 ------HYLSLCVTDTGTGMTPDVIA 602 >gi|302037106|ref|YP_003797428.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300605170|emb|CBK41503.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 657 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 23/201 (11%) Query: 10 SSMDLVALLCSRICHDIISP-IGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68 + LV L I H++ +P IG + L D+ + E RL + A + + Sbjct: 433 EQVKLVGQLAGGILHEVRNPLIGLGSLATHLADQASLPQEARDRCRLIAREAARIDELLE 492 Query: 69 LAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTGEKIDLSRERAKIL- 119 G I + ++ V++D I RV+ S + + RA IL Sbjct: 493 SHLGQLRPRPFDIAVCELPAVLDDTLTLLRPNLIKNHIRVKSSMAPDLPAVDASRAHILQ 552 Query: 120 --LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 LN+ M A ++P GG + +++ ++ G L RF + I ++ Sbjct: 553 VCLNIAMNAIDAMPAGGSLNVTLSPD------VRRVPGVLMRFADSGKGIAGEDLT---- 602 Query: 178 SHDIQFYYVILLAHENKIRLL 198 H + ++ A + L Sbjct: 603 -HIYEPFFTNGKAKGVGLGLT 622 >gi|294010587|ref|YP_003544047.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292673917|dbj|BAI95435.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 687 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 29/184 (15%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----------RLKFMRLAFG 72 HD + + + +LELL ED+ +R ++ +A+ L F R Sbjct: 317 HDFNNLLQIVTGNLELLQRGLNEDQAR--LRRAADNAMAGAERAALLTQRLLAFAR---- 370 Query: 73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLF 123 I + + D + + W E ID+++ LLNL Sbjct: 371 RQPLAPERIDPNRLVSGMSDMLNRTLGETIEVETIQSARIWPIE-IDVNQME-NALLNLA 428 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182 + A ++P GGK+TI V ++ + ++ + + G ++ + SH I+ Sbjct: 429 VNARDAMPDGGKLTIEVANTHIDEDYAAQEAEVSPGQYVLISVSDTGEGMDEEVLSHAIE 488 Query: 183 FYYV 186 ++ Sbjct: 489 PFFT 492 >gi|260459119|ref|ZP_05807374.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259034673|gb|EEW35929.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 858 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 21/141 (14%) Query: 22 ICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 I HD + + AI + +LL + D + I+ ++ A ++ + LAF Sbjct: 486 IAHDFNNVLTAIIMASDLLLTNHRPSDPSFPD--IMNIKQNANRAASLVRQL-LAFSRKQ 542 Query: 76 SVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125 ++ + L D+ ++ + D ++++ W + E+ ++NL + Sbjct: 543 TLRPEVLNLTDVLADLRMLLARLVGNDIKLKIDHGRDLWPVKVDIGQFEQV--VVNLAVN 600 Query: 126 AHASLPRGGKVTISVQDSKNE 146 A ++P GG +T+ ++ E Sbjct: 601 ARDAMPAGGDLTVRTRNVTTE 621 >gi|163851076|ref|YP_001639119.1| histidine kinase [Methylobacterium extorquens PA1] gi|218529906|ref|YP_002420722.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240138210|ref|YP_002962682.1| putative sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens AM1] gi|254560770|ref|YP_003067865.1| sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens DM4] gi|163662681|gb|ABY30048.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218522209|gb|ACK82794.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|240008179|gb|ACS39405.1| putative sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens AM1] gi|254268048|emb|CAX23919.1| putative sensor hybrid histidine kinase with PAS/PAC and response receiver regulator receiver domains [Methylobacterium extorquens DM4] Length = 541 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 30/171 (17%) Query: 37 LELLDEVGIEDEVMQLIRLSSMSAI---IRLKFMRLAF--------------GYTGSVDS 79 L LLD ++ M+ + +A +L LAF G S+ Sbjct: 190 LALLDHPTLDVSRMRRAGEAVRAATDRAAKLTHQLLAFSRKQRLEGRLLNLNGLVESMGE 249 Query: 80 LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139 + G + +D + WT +ID ++ LLN+ + A ++P GG VT+ Sbjct: 250 MAG----RTIGDDVVLKSVLAPDLWT-TRIDPTQAEV-ALLNVLINARDAMPEGGSVTVR 303 Query: 140 VQ----DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186 + + ++ ++ G T G I + ++ ++ Sbjct: 304 TENLLIEDEDTALYKTVPPGAYVVI--SVTDTGTGMPSE-ILARVMEPFFT 351 >gi|86740853|ref|YP_481253.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3] gi|86567715|gb|ABD11524.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3] Length = 670 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 30/189 (15%) Query: 24 HDIISPIGAIHNSLE-LLDEVGIEDEV---MQLIRLSSMSAIIR----LKFMRLAFGYTG 75 HD + +G I E +LD + +D M I ++ A L F R Sbjct: 295 HDFNNLLGVITGYAEIVLDTLPDDDPCRADMDEISRAADQAAGLTRQLLTFSR----QES 350 Query: 76 SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128 S + L + + + + + +++ + + ++++NL + + A Sbjct: 351 SKPETLDLNAVVEGTRNLLRRTIGEDIEIVTLLDPDLHPVTIDPSKIQQVVMNLVVNSRA 410 Query: 129 SLPRGGKVTISV----QDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDS--- 178 ++P GG++T+S +D +G R + + + + Sbjct: 411 AMPDGGRLTLSTANLDRDRGPSPADRPAAHGRPSPEERPKRGWACLAVADTGCGMSPEVI 470 Query: 179 -HDIQFYYV 186 ++ ++ Sbjct: 471 RRAVEPFFT 479 >gi|325293895|ref|YP_004279759.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325061748|gb|ADY65439.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 704 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 14/161 (8%) Query: 22 ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80 + H++ + IG I SL LL+ E G D + I A R + + + GS + Sbjct: 491 VSHEVGNMIGIITGSLGLLERETGFNDRQKRHIAR-IRKAADRGRSLASSMLTIGSQQPI 549 Query: 81 IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129 ++ ++ IAV + +++ ++ + +LNL + A A+ Sbjct: 550 HPSCINVANLLRGMADILEIAVGPKCRIALEIDEDLPSVALDPALLEQSILNLCLNAAAA 609 Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 +P GG ++IS K+ + ++ G PE + + Sbjct: 610 MPDGGLISISAASEKDTLLIAVTDEGVGM-TPEAVDKAFEP 649 >gi|168701012|ref|ZP_02733289.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 659 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 12/143 (8%) Query: 11 SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRL 64 S L AL L I HD + + I EL D + QL+R+++ + + Sbjct: 286 SQRLEALGTLAGGIAHDFNNLLAGIFGFAELAQSADDLGAAREHCGQLVRVATRARELIA 345 Query: 65 KFMRLAFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--- 118 + + A + + ++ ++ + ++V +S + ++ Sbjct: 346 QVLAFARPQPDGREPVSLPAVVRELLPLMRASFSKGIAIEVRLAESGALVSADGGQLHQA 405 Query: 119 LLNLFMVAHASLPRGGKVTISVQ 141 +LNL A ++PRGG++++ V+ Sbjct: 406 VLNLCTNAAQAMPRGGRLSVRVE 428 >gi|115375212|ref|ZP_01462478.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310818911|ref|YP_003951269.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367774|gb|EAU66743.1| histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309391983|gb|ADO69442.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 836 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 83/221 (37%), Gaps = 19/221 (8%) Query: 13 DLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69 AL L + + H++ +P+G I N++ L + + + L+ + + + + + Sbjct: 609 RFAALGELSAIVAHEVRNPLGVIFNAVASLRRLMPSKGDAAMLLDILAEESDRLNRIVGD 668 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSWTGEKIDLSRERAK 117 YT D ++ D+ +VI+D + + ++ V + + + R + Sbjct: 669 LLDYTRPRDPILHPEDLGRVIQDALEAARLQGGPGGQGVSVQIHVEPSIPPVPMDRRLIR 728 Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFP-EKFTQIVDGNVE 173 L+N+ + A ++P GG V ++ + + + + P E ++ + Sbjct: 729 QALVNIIVNAIHAMPHGGVVRVNARREPHAGRDFLRIDVTDQGMGIPAELLHRVFEPFFT 788 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + V + E++ + E + L Sbjct: 789 TKAQGTGLGLAVVKRILEEHRGEIAVEGAQGQGTTFTLRLP 829 >gi|159897381|ref|YP_001543628.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890420|gb|ABX03500.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1055 Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 27/229 (11%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAI-HNSLELL--DEVGIEDEVMQLIRLSSMSAIIR 63 ++S L AL L S + HD + + +I N+ LL ++ + +Q+I ++ + Sbjct: 683 INSEKLRALGQLASGVAHDFNNLLASILGNAQFLLIHEDDADRRDALQVIERAAKDGAVT 742 Query: 64 LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110 ++ F R D ++ L D+ + +F ++ +S Sbjct: 743 VRRIQEFARA---SETIYDDIVDLRDVVNIALEFTRPSWRDKTQQRGIKLDISTHLAAAH 799 Query: 111 LSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 + A++ +NL + A LP+GG +TIS + + F++ NG PE T+I Sbjct: 800 VQGSAAELREVCVNLVVNAIDVLPQGGTITISTGTTGEWSYFTIADNGPGI-APEDRTRI 858 Query: 168 VDGNVESTIDSHDIQFYYVILLA--HENKIRLLPEIIDDHNVVLSALLE 214 + + + L+ ++ +LL E + H LL Sbjct: 859 FEPFFSTKPIGEGTGMGLAVALSIVQRHRGKLLTEDVYPHGARFVVLLP 907 >gi|302340470|ref|YP_003805676.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637655|gb|ADK83082.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 365 Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 30/221 (13%) Query: 20 SRICHDIISPIGAI-------HNSLELLDEVGIEDEVMQLIRLSSMSA----IIRLKFMR 68 S I HD+ SP A+ + ++ L E++ I +S +A L++ R Sbjct: 146 SIIAHDLRSPFTALLGVSQYLRDGIDEL-SPETAKELIGGIHTASKNAFDLLENLLQWSR 204 Query: 69 LAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKI---- 118 + G V + ++ + D I K + V + + A++ Sbjct: 205 VQTGTAVFVPEDV---ELASSVRDNIGLLGVNIAAKELSVENKVPENIRAYADARVVDTV 261 Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVE 173 + NL A PRGG+V + +++ + ++ +G + + Sbjct: 262 IRNLLSNAVKFTPRGGRVELIGEENGKDCRLIVRDSGVGMSEKQLASLFKIDSRQNTKGT 321 Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 + + + L E V + L Sbjct: 322 EQEEGSGLGLILSKEFLDRSNGYLSVESRPGEGSVFTVTLP 362 >gi|258592528|emb|CBE68837.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 781 Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 18/104 (17%) Query: 43 VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRV 100 G + QL A L F R + + L + + D ++ DKR+ Sbjct: 449 EGAGERCAQL-------ANRLLGFAR----GGKHQEMPVDLHTAAREVVDLLSRTIDKRI 497 Query: 101 QVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGGKVTIS 139 ++ + +++LNL + A ++P GG + Sbjct: 498 TITQRLCVEQAVALGDPSQIQQVILNLAVNARDAMPHGGNLHFE 541 >gi|283851427|ref|ZP_06368708.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283573165|gb|EFC21144.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 591 Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 20/163 (12%) Query: 19 CSRICHDIISPI---GAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74 +R+ H+I +P+ G + + L G + + +I + L +R +T Sbjct: 375 AARLSHEIKNPLMLMGGFASQVRRHLPPEGTDAGKLGIIEDEAKRLESLLNEVR---DFT 431 Query: 75 GSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123 I D+ + + E F A V+ + + + A+I LLNL Sbjct: 432 RPQPPRIEPRDLNETVGESLALMAEAFKARGIVVEKRLDPDLPPVPHDEARIKQVLLNLL 491 Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 A ++ GG+++++ + ++ G PE Sbjct: 492 KNAAEAMDSGGRLSVATALADGRVTVAVADTGGG--IPEAVRA 532 >gi|253700882|ref|YP_003022071.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775732|gb|ACT18313.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 692 Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 13/146 (8%) Query: 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSAIIRLKFMRLAFG 72 LL + HD + + I E+L ++ I +S A + + LAF Sbjct: 316 LLAGGVAHDFNNILTVIGGYCEMLKLDLAPGHPLRDKVLQISAASERASNLTRSL-LAFS 374 Query: 73 YTGSVDS-LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFM 124 G V + L + + +E F+ + + +S + + S + ++L+NL Sbjct: 375 RKGEVKAVPTDLNLLLRGVEKFLQRIIGEDITLSTKVPESSIWAVVDSGQIDQVLMNLAA 434 Query: 125 VAHASLPRGGKVTISVQDSKNENIFS 150 A ++P+GG + + ++ + F Sbjct: 435 NARDAMPKGGSLFVELERQDIDAGFV 460 >gi|196229659|ref|ZP_03128523.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196225985|gb|EDY20491.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1055 Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 15/133 (11%) Query: 22 ICHDIISPIGAIH--NSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAF 71 I HD + + AI ++L LL+ + + IR M+A R L F R Sbjct: 688 IAHDFNNLLSAIQMQSAL-LLETAPDDGVTREGIRD-IMTAADRATHLTRQLLTFSRRNV 745 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128 +D +G + +++ + D ++ + + ++L+NL + A Sbjct: 746 KQARDLDLTEVVGAMNKLLLRMLGEDIVLESRFASPLPMVHADPGMVEQVLMNLAINARD 805 Query: 129 SLPRGGKVTISVQ 141 ++P GG++ +++ Sbjct: 806 AMPTGGRLIVTLD 818 >gi|167814380|ref|ZP_02446060.1| sensor histidine kinase [Burkholderia pseudomallei 91] Length = 612 Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91 +D + +++ LI S A+ R++ F R +G + L + Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442 Query: 92 DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + E L + +++ +NL + A S+ G +TI + Sbjct: 443 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203 S+ G + +I D + I + + R+ E Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 561 Query: 204 DHNVVLSALLE 214 L+ L Sbjct: 562 GRGSTLTVTLP 572 >gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] Length = 1062 Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 25/220 (11%) Query: 20 SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLS---SMSAIIRLKFMRL 69 SR+ H++ +P+ A+ +LL + Q++R L RL Sbjct: 695 SRMSHELRTPLNAMIGFAQLLGLDRDPPLAPHQREWSTQMLRAGWHLLAMINDTLDLARL 754 Query: 70 AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLFM 124 G + L + IA V E + + + ++ L Sbjct: 755 ETGAVQLDLRPLDLRSAVGASIEMIATAAERMGVTVDAELAPEALAVLADDTRLKQVLTN 814 Query: 125 VAHASLPR---GGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD-----GNVEST 175 + ++ GG V + +E ++ G PE+ + G +ST Sbjct: 815 LLSNAVKYNRPGGTVVVESLAPDDEHVQLRVRDTGLGM-TPEQVAGLFQPYNRLGREQST 873 Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 I+ I LA L + V + L + Sbjct: 874 IEGTGIGLVISRRLAELMGGTLDGDSTAGSGSVFTLTLPR 913 >gi|182413096|ref|YP_001818162.1| histidine kinase [Opitutus terrae PB90-1] gi|177840310|gb|ACB74562.1| histidine kinase [Opitutus terrae PB90-1] Length = 248 Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 20/210 (9%) Query: 24 HDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLSSMSAIIR-LKFMRLAFGY 73 H++ +P+ ++ ++LL+E E +++IR L+F+ LA G Sbjct: 34 HEVRNPLSSLDVHVQLLEEDLHQLPGGTLPKAAERLEIIRTELKRLDNIVLQFLSLA-GP 92 Query: 74 TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRER-AKILLNLFMV 125 T + +G++ + A + + V ++ R + + L+NL + Sbjct: 93 TTVNRQPVQIGEVIDYVCRLFAPEAATRDIELSAHVDAGLPPLEADRAQLTQALVNLVIN 152 Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184 A ++ R G+V + + ++ +++ + A P+ + + + + + Sbjct: 153 ALQAVERRGRVEVLARRNETPAALVVEVRDSGAGIDPQHAVAMFEPFYTTRDQGTGLGLW 212 Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 V + + R+ V + L Sbjct: 213 IVHQIVSAHGGRVQATNAPAGGAVFTLQLP 242 >gi|119714514|ref|YP_921479.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119535175|gb|ABL79792.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 628 Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 17/159 (10%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------- 65 D + L + + H++ +P+ I +LELL ++ +++ Q + + R++ Sbjct: 401 DYRSQLIATLSHELRTPLTVISGNLELLGDLSLDETA-QHYQEAMTRGTTRMQKVVDDLL 459 Query: 66 -FMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA--- 116 R++ V + L + + D + A +++ + + + Sbjct: 460 LLARVSDPQHPLVQVPVDLNAVTRTTVDLLTAPALAKGLSLRLQHNPREHLVPGDPGELD 519 Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 ++L NL A P GG VT++V+ + + + +G Sbjct: 520 RLLTNLVSNAVKYTPAGGTVTVTVERRGDAAVLEVADDG 558 >gi|20257537|gb|AAM15931.1|AF494454_2 NtrB [Gluconacetobacter diazotrophicus] Length = 384 Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 76/209 (36%), Gaps = 21/209 (10%) Query: 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQ-LIRLSSMSAIIRLKFMRLAFGYTG 75 + + + H++ +P+ I + +LL+ E + + LIR + ++ R+ Sbjct: 140 MAAILAHEVKNPLSGIRGAAQLLESSVAEGDRELAVLIRDEADRIRDLVE--RMEMFSDK 197 Query: 76 SVDSL-----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAH 127 ++ L + + E A + R+ + + R ++LLNL A Sbjct: 198 PLERRPVNIHRVLERVRMLAEQGFAGNIRIVEDYDPSLPPVWGNRDQLVQVLLNLVKNAA 257 Query: 128 ASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDI 181 ++ +GG++T+ + + L + G R + + +I H Sbjct: 258 EAIASDGQGGEITL---GTSYRHGVRLAVPGMEHRVELPLVVSVRDTGPGIPDSIRPHLF 314 Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210 + + + + +DDH V+ Sbjct: 315 EPFLTTKTSGSGLGLPGGQDLDDHGGVIE 343 >gi|17545050|ref|NP_518452.1| C4-dicarboxylate transport sensor kinase transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427340|emb|CAD13859.1| probable c4-dicarboxylate transport sensor kinase transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 665 Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 36/184 (19%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLDEV--GIEDEVMQLIRLSSM-- 58 + + L AL + + I H++ P+ A+ N+ LL+ G + ++ I + Sbjct: 425 VQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADLTERM 484 Query: 59 -SAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110 +LK RLA V + L + ++ +A + + W + Sbjct: 485 GKITAQLKLFAGRSRRRLA-----DVQVRVALDHVLALLRPRLA-EVETALHWRLPEAAC 538 Query: 111 -LSRERAKI---LLNLFMVAHAS-----LPRGGKVTISVQDSKNENI---FSLKINGNLA 158 + + K+ L+NL A + LPR G++ I + + ++ NG Sbjct: 539 VVRADELKLEQVLINLIGNALDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGI 598 Query: 159 RFPE 162 Sbjct: 599 AADA 602 >gi|194336406|ref|YP_002018200.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194308883|gb|ACF43583.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 680 Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 26/172 (15%) Query: 13 DLVAL--LCSRICHDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSSM-----SA 60 L A+ L S + H+I +P+ AI ++E E+E QL+R +A Sbjct: 461 KLSAMGELASGVAHEIRNPLNAIGILAQRLAIE-FSPTADEEEYRQLVRAVVSEVYRVNA 519 Query: 61 IIR--LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWT-GEKIDLS 112 II+ LKF R + + L + + A R ++ G +++ Sbjct: 520 IIQRFLKFAR----PSKLIMIKSDLDEFMLSYRHLLQGEADAKGIRFSLNTDSGAMVNID 575 Query: 113 RERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 E+ + LLNL A + GG++T+S+ +N+ + + G E+ Sbjct: 576 HEQMRQALLNLVQNAVEATEEGGEITVSLFCRENQALIEIVDTGRGIPEKER 627 >gi|315604747|ref|ZP_07879810.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313759|gb|EFU61813.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 480 Score = 34.5 bits (78), Expect = 9.5, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 10/203 (4%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLK-FMRLAFGYTGSVD 78 + H++ +PI + +ELLD D + L+ I +K + LA Sbjct: 266 VSHELRTPITVVRGHMELLDPSDHADVVDTRALVIDELDRMGILVKDLLELARASDAVAP 325 Query: 79 SLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GG 134 + + L + + D A+ R V S + A++ +A ++ G Sbjct: 326 TPVDLAALTDAVVDKASALGDRDWVLDASAHASCSLDSARMTQAWLQLAQNAVQYSAKGT 385 Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAH 191 +V I + + ++ G + + V G + + V +A Sbjct: 386 EVGIGSRVEGDVARMWVRDRGEGIAPQDIERVRGRFVRGVGAERVSGSGLGLSIVESIAR 445 Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214 + RL E + ++ Sbjct: 446 AHGGRLDIESTLGEGSTFTLVIP 468 >gi|262195304|ref|YP_003266513.1| response regulator receiver sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078651|gb|ACY14620.1| response regulator receiver sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 572 Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 20/173 (11%) Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--------AIIRL 64 + +A+L H++ +P+ I +EL++ + D ++ I+ + L Sbjct: 198 EFIAMLA----HELRNPLAPIVIGIELMESQNLTDPLLVRIQETMKRQVEHLTRLVDDLL 253 Query: 65 KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119 R+ G + L I + D A R+ V E I+L + A+I+ Sbjct: 254 DVSRITSGKIELRREMTPLAPIVEQATDAARPALEAQAHRLFVEMPSEPIELYVDAARII 313 Query: 120 LNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 + + + ++ GG++ + ++ + I+ PE +I D Sbjct: 314 QVVANLLNNAVRYTEPGGEIRLRCAREDDDVVSISVIDNGQGIEPEFIERIFD 366 >gi|219852415|ref|YP_002466847.1| PAS/PAC sensor hybrid histidine kinase [Methanosphaerula palustris E1-9c] gi|219546674|gb|ACL17124.1| PAS/PAC sensor hybrid histidine kinase [Methanosphaerula palustris E1-9c] Length = 976 Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 51/139 (36%), Gaps = 7/139 (5%) Query: 83 LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQ 141 L + + + +VS ++ L R++ + L L A ++PRGG +TI + Sbjct: 678 LHEAAENCNGRGSYQIEYRVSDDLPRVFLDRDQIVEALQQLITNAMEAMPRGGTITIVAE 737 Query: 142 -----DSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195 D + E +++ P E +I + N + + + + ++ Sbjct: 738 LCDRTDGEREPQLCIRVIDIGQGIPDENQKKIFELNFTTKDGAAGLGLPLARSVIQKHGG 797 Query: 196 RLLPEIIDDHNVVLSALLE 214 + +++ ++ Sbjct: 798 EIEVSSGPGGGTIVTFMIP 816 >gi|119475917|ref|ZP_01616269.1| sensor histidine kinase [marine gamma proteobacterium HTCC2143] gi|119450544|gb|EAW31778.1| sensor histidine kinase [marine gamma proteobacterium HTCC2143] Length = 445 Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 23/157 (14%) Query: 24 HDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGYTGSVD 78 H++ +P+ A+ L L++E G + + +Q + S L F RL S D Sbjct: 225 HELRTPLAALKVGLHNLIEESGPKSDNLQELEKGVDRMGHSIEQILAFHRL------SPD 278 Query: 79 SLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEKI--DLSRERAKILLNLFMVAHAS 129 + + +Q I D + +R ++ E + +R + L + + Sbjct: 279 RFLASPEVVDIKKIAQQTIVDLYSACERKNLNIAIEGTTVLVEGDRFALATLLKNLVDNA 338 Query: 130 L---PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 + P G + I++ + +++ +G+ + + Sbjct: 339 IKYTPVNGTIVIAIAAMGSVATIAVEDSGSGIKEADL 375 >gi|77458230|ref|YP_347735.1| periplasmic sensor Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382233|gb|ABA73746.1| putative sensor histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 497 Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 16/164 (9%) Query: 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63 +S+ VAL + S + H + +P+ I +S EL E G + + +I Sbjct: 265 ISNETFVALGEMSSAVAHSLRNPLATIRSSAELAQEIASPGAQRNIGDIISQ-VDRMSRW 323 Query: 64 LKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122 ++ + ++ + L +E + F A+ +R V D + L Sbjct: 324 VRELLVSLRPMSDDGEAVDLLAAVEDTLGAFDALIRRNGVEVRFTPQDCP-PVVSQQVLL 382 Query: 123 FMVAHA-------SLPRGGKVTISVQDSK-NENIFSLKINGNLA 158 + ++ ++PRGG +++ ++ ++ + +L G Sbjct: 383 TQILNSLFANALEAMPRGGVLSVEIETAQTGQVRMTLSDTGKGM 426 >gi|209528133|ref|ZP_03276607.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491421|gb|EDZ91802.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 665 Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 14/137 (10%) Query: 18 LCSRICHDI---ISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGY 73 L S I HD+ ++PI A +L + ++++++LI ++ + + + A G+ Sbjct: 298 LASGIAHDLNNILTPILASVQMFQLGLDQEKQNKMLKLIENNTKRGAHLIKQVLSFAKGF 357 Query: 74 TGSVDSLIGLG---DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125 G ++ ++ + + V + WT + +IL+NL + Sbjct: 358 EGKLEIFQVRHLISEVADIARETFPKSINVSTNVSKELWTVYGD--PTQLHQILMNLCVN 415 Query: 126 AHASLPRGGKVTISVQD 142 A ++P GG +++S + Sbjct: 416 ARDAMPGGGNLSLSASN 432 >gi|188579428|ref|YP_001922873.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342926|gb|ACB78338.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1381 Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 38/227 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIR--------LKFMRLAF 71 + HD + + I SLELL + + L R ++ A R L F R Sbjct: 1016 LAHDFNNLLTGISGSLELLQTRMSQGRLTDLDRYINAAQGASKRAAALTHRLLAFSR--- 1072 Query: 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDLSRERAKILLNLFM 124 + + +ED I V + + LLNL + Sbjct: 1073 -RQTLDPKPTDVNALVHGMEDLIRRTVGPAVHIEVVGAAGLWPALVDPPQLENALLNLCI 1131 Query: 125 VAHASLPRGGKVTISVQDSKNENIFS--------------LKINGNLARFPEKFTQIVDG 170 A ++P GG++TI + ++ + + G P+ + D Sbjct: 1132 NARDAMPEGGRITIETANKWLDDRTARERELPPGQYLSLCVTDTGTGM-TPDVIARAFDP 1190 Query: 171 NVESTIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ A ++ ++ + L + Sbjct: 1191 FFTTKPTGQGTGLGLSMIYGFARQSGGQVRIYSEVGQGTTMCIYLPR 1237 >gi|163852260|ref|YP_001640303.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218531018|ref|YP_002421834.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|163663865|gb|ABY31232.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|218523321|gb|ACK83906.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 622 Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 38/224 (16%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73 I HD + + AI SLEL+ + ++ + ++ A R L F R Sbjct: 269 IAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNATGAAQRGSALTKRLLSFSR----- 323 Query: 74 TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK------ILLNL 122 S D+ D +IE A+ V V E D+ +LNL Sbjct: 324 --SNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEP-DMPFALVDPDQLELAVLNL 380 Query: 123 FMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGNLARFPEKFTQIVDGNVE 173 + A ++P GG VTIS + ++ + PE ++ + Sbjct: 381 CINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTGIPPEILERVCEPFFT 440 Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215 + ++ LA + RL + L + Sbjct: 441 TKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484 >gi|21231478|ref|NP_637395.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113153|gb|AAM41319.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 423 Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 24/195 (12%) Query: 24 HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76 HD+ SP+ +I + E+L L IR S L F R G G Sbjct: 187 HDLRSPLQSISMATEMLQLEPQSPRGASLLGHIRTSLTRIGGLVDDVLDFARGRLG--GG 244 Query: 77 VDSLIGLGDI-----EQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNLFMVAHASL 130 + + + D +V+++ + R + ++ + ++ + + Sbjct: 245 IPVTLRVEDALERRLLEVVQEVCSATGRTDLHADIHIGGEIVCDAPRLSQLFANLLSNAA 304 Query: 131 PRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF------ 183 G + ++++ + I L ++ PEK ++ D+ Q Sbjct: 305 VHGTPSIPVTLRAWQAAGILHLSVHNGGVIAPEKRAKLFSPFSRDDDDAP--QPGLGLGL 362 Query: 184 YYVILLAHENKIRLL 198 Y +A ++ RL Sbjct: 363 YIAAEIAKAHEGRLS 377 >gi|239813727|ref|YP_002942637.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110] gi|239800304|gb|ACS17371.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110] Length = 641 Score = 34.5 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 20/168 (11%) Query: 12 MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIR 63 + +A+L H++ +P+ I N+LELL E + + +R + Sbjct: 277 TNFLAMLG----HELRNPLAPISNALELLKREKAESAALVHTRDIIGRQLRQITRLVDDL 332 Query: 64 LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKIDL-----SRER 115 L R+ G + + L D + IE + K + + D S Sbjct: 333 LDVGRITSGKIQLENKPVRLRDAIAEAIEAVRPLIDGKSQTLHLQTQDADPWIAGDSARV 392 Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163 +I+ NL A GG + +S+ + + S++ +G + Sbjct: 393 VQIVSNLVHNAAKFTGNGGNIHVSLSRTAADADISVRDDGPGIPPQDL 440 >gi|312200514|ref|YP_004020575.1| histidine kinase [Frankia sp. EuI1c] gi|311231850|gb|ADP84705.1| histidine kinase [Frankia sp. EuI1c] Length = 486 Score = 34.5 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 14/75 (18%) Query: 77 VDSLIGLGDIEQVIEDFIA---------VDKRVQVS---WTGEKIDLSRERAKILLNLFM 124 +L+G D+ V+ + +A +D R+++ W + D +R + ++NL M Sbjct: 225 QPALVGPIDVNAVLRETVAMLRRPLGARIDLRIELDDALWRV-RADPARLE-QAIVNLAM 282 Query: 125 VAHASLPRGGKVTIS 139 A ++PRGG +T++ Sbjct: 283 NARDAMPRGGTLTVT 297 >gi|237727861|ref|ZP_04558342.1| sensory kinase in two component regulatory system with HydG [Citrobacter sp. 30_2] gi|226910418|gb|EEH96336.1| sensory kinase in two component regulatory system with HydG [Citrobacter sp. 30_2] Length = 493 Score = 34.5 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 37/98 (37%) Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 ++LLNL++ A ++ R G +T+ +S E + + + E+ I + Sbjct: 389 QVLLNLYLNAIHAIGRQGTITVEANESSGERVKIVVTDSGKGIAAEQLEAIFTPYFTTKA 448 Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 D + V + ++ + ++ + L Sbjct: 449 DGTGLGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLP 486 >gi|198284060|ref|YP_002220381.1| integral membrane sensor signal transduction histidine kinase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248581|gb|ACH84174.1| integral membrane sensor signal transduction histidine kinase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 431 Score = 34.5 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%) Query: 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75 +LL + I HD+ SP+ + + ELL + + +++ L LA G Sbjct: 228 SLLLTGISHDLRSPLARLRMAWELLPDNTPQHLREGMLQD-IERMDALLA-QSLALG--R 283 Query: 76 SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPR 132 + + + D+ ++ + A +R W + +R + L + +L Sbjct: 284 GMSAKVVDFDLMVLLAEVGADFEREGGHWQATLPRRYPFRGDREALRRLLSNLLDNALRY 343 Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH------DIQFYYV 186 GG + + K + L++ PE + V D+ + Sbjct: 344 GGG-RVRAEFQKTQGRTQLRLCDEGPGVPEADLETVFEPFIRLDDARGHGEGSGLGLAIA 402 Query: 187 ILLAHENKIRL 197 LA +RL Sbjct: 403 RQLAEAQGMRL 413 >gi|171741318|ref|ZP_02917125.1| hypothetical protein BIFDEN_00397 [Bifidobacterium dentium ATCC 27678] gi|283455322|ref|YP_003359886.1| phosphate regulon sensor protein phoR [Bifidobacterium dentium Bd1] gi|171276932|gb|EDT44593.1| hypothetical protein BIFDEN_00397 [Bifidobacterium dentium ATCC 27678] gi|283101956|gb|ADB09062.1| Phosphate regulon sensor protein phoR [Bifidobacterium dentium Bd1] Length = 456 Score = 34.5 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 57/238 (23%), Gaps = 47/238 (19%) Query: 22 ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------------------LIR-LSSMSAI 61 + H++ +P GAI E + + + + ++ LI + SA Sbjct: 192 VSHELKTPAGAISLLAETIGDAADDPDAVRYFSGRISKESERLTELVHRLIDLQKAQSAA 251 Query: 62 I-----RLKFMRLAFGYTGSVDSLIGLGDI--------------EQVIEDFIAVDKRVQV 102 RL +R+A G I + D A Sbjct: 252 AMLNAERLSVLRIAREAIGENQVKAESKRIGLALSLNGRPVPLRAGMAGDATASSGGEAD 311 Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162 + + + K NL A P V + + + + G P Sbjct: 312 VFVDADHETIKTAVK---NLVENAVNYSPMNTTVAVGIGHEGGKVTIRVVDQGIGIPAPS 368 Query: 163 K---FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 F + D + + + + + L + Sbjct: 369 LDRIFERFYRVDPARSRETGGTGLGLAITKHCVQDCGGTITVWSREGEGSTFTITLPE 426 >gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 523 Score = 34.5 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 13/164 (7%) Query: 64 LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRERA 116 L F R+ G + I L + I+ + Q ++ + R Sbjct: 344 LDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQAKAQNIALDYEIAADLPHLIADHRRI 403 Query: 117 K-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING-----NLARFPEKFTQIVDG 170 + +LLNL A P GG+V I + + + G + +D Sbjct: 404 RQVLLNLLSNAVKFTPDGGEVHIGALVADGAMLLRVTDTGIGIAAENIPLALERFGQIDS 463 Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 ++ + + L + L ++ Sbjct: 464 DLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELGRGTTVTVTFP 507 >gi|53718346|ref|YP_107332.1| putative two-component sensor histidine kinase [Burkholderia pseudomallei K96243] gi|53724710|ref|YP_102089.1| sensor histidine kinase [Burkholderia mallei ATCC 23344] gi|67639305|ref|ZP_00438177.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4] gi|76809692|ref|YP_332335.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei 1710b] gi|121601428|ref|YP_993986.1| sensor histidine kinase [Burkholderia mallei SAVP1] gi|124383665|ref|YP_001028349.1| sensor histidine kinase [Burkholderia mallei NCTC 10229] gi|126450107|ref|YP_001081994.1| sensor histidine kinase [Burkholderia mallei NCTC 10247] gi|126454746|ref|YP_001065038.1| sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|167004167|ref|ZP_02269937.1| sensor histidine kinase [Burkholderia mallei PRL-20] gi|167844431|ref|ZP_02469939.1| sensor histidine kinase [Burkholderia pseudomallei B7210] gi|167901423|ref|ZP_02488628.1| sensor histidine kinase [Burkholderia pseudomallei NCTC 13177] gi|167909663|ref|ZP_02496754.1| sensor histidine kinase [Burkholderia pseudomallei 112] gi|226196660|ref|ZP_03792240.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|237810948|ref|YP_002895399.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|242317400|ref|ZP_04816416.1| sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|254176754|ref|ZP_04883411.1| sensor histidine kinase [Burkholderia mallei ATCC 10399] gi|254181712|ref|ZP_04888309.1| sensor histidine kinase [Burkholderia pseudomallei 1655] gi|254187641|ref|ZP_04894153.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254203771|ref|ZP_04910131.1| sensor histidine kinase [Burkholderia mallei FMH] gi|254208748|ref|ZP_04915096.1| sensor histidine kinase [Burkholderia mallei JHU] gi|254259644|ref|ZP_04950698.1| sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|254360200|ref|ZP_04976470.1| sensor histidine kinase [Burkholderia mallei 2002721280] gi|52208760|emb|CAH34696.1| putative two-component sensor histidine kinase [Burkholderia pseudomallei K96243] gi|52428133|gb|AAU48726.1| sensor histidine kinase [Burkholderia mallei ATCC 23344] gi|76579145|gb|ABA48620.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b] gi|121230238|gb|ABM52756.1| sensor histidine kinase [Burkholderia mallei SAVP1] gi|124291685|gb|ABN00954.1| sensor histidine kinase [Burkholderia mallei NCTC 10229] gi|126228388|gb|ABN91928.1| sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|126242977|gb|ABO06070.1| sensor histidine kinase [Burkholderia mallei NCTC 10247] gi|147745283|gb|EDK52363.1| sensor histidine kinase [Burkholderia mallei FMH] gi|147750624|gb|EDK57693.1| sensor histidine kinase [Burkholderia mallei JHU] gi|148029440|gb|EDK87345.1| sensor histidine kinase [Burkholderia mallei 2002721280] gi|157935321|gb|EDO90991.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|160697795|gb|EDP87765.1| sensor histidine kinase [Burkholderia mallei ATCC 10399] gi|184212250|gb|EDU09293.1| sensor histidine kinase [Burkholderia pseudomallei 1655] gi|225931191|gb|EEH27198.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|237505497|gb|ACQ97815.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|238519841|gb|EEP83307.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4] gi|242140639|gb|EES27041.1| sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|243060436|gb|EES42622.1| sensor histidine kinase [Burkholderia mallei PRL-20] gi|254218333|gb|EET07717.1| sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 627 Score = 34.5 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%) Query: 40 LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91 +D + +++ LI S A+ R++ F R +G + L + Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442 Query: 92 DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145 + + + + + E L + +++ +NL + A S+ G +TI + Sbjct: 443 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502 Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203 S+ G + +I D + I + + R+ E Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 561 Query: 204 DHNVVLSALLE 214 L+ L Sbjct: 562 GRGSTLTVTLP 572 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.150 0.427 Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,816,518,191 Number of Sequences: 14124377 Number of extensions: 149520207 Number of successful extensions: 470560 Number of sequences better than 10.0: 3019 Number of HSP's better than 10.0 without gapping: 483 Number of HSP's successfully gapped in prelim test: 2901 Number of HSP's that attempted gapping in prelim test: 468412 Number of HSP's gapped (non-prelim): 3660 length of query: 215 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 82 effective length of database: 2,964,251,489 effective search space: 243068622098 effective search space used: 243068622098 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 79 (34.9 bits)